Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423460 | sp|Q5XEP9|KCS2_ARATH | 56.108 | 483 | 197 | 6 | 2 | 471 | 36 | 516 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423460 | A0A1S2XJT1 | 82.942 | 469 | 79 | 1 | 1 | 468 | 1 | 469 | 0.0 | 808 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000190 | Msa1423460 | 0.800325 | 1.519614e-48 | -8.615850e-47 |
| Msa0006980 | Msa1423460 | 0.802749 | 4.840234e-49 | -8.615850e-47 |
| Msa0015710 | Msa1423460 | 0.811353 | 7.305118e-51 | -8.615850e-47 |
| Msa0016120 | Msa1423460 | 0.802110 | 6.553331e-49 | -8.615850e-47 |
| Msa0017510 | Msa1423460 | 0.808213 | 3.458818e-50 | -8.615850e-47 |
| Msa0019600 | Msa1423460 | 0.850759 | 1.379110e-60 | -8.615850e-47 |
| Msa0050040 | Msa1423460 | 0.808692 | 2.733787e-50 | -8.615850e-47 |
| Msa0055450 | Msa1423460 | 0.802659 | 5.050672e-49 | -8.615850e-47 |
| Msa0102990 | Msa1423460 | 0.808491 | 3.017904e-50 | -8.615850e-47 |
| Msa0111750 | Msa1423460 | 0.807567 | 4.744851e-50 | -8.615850e-47 |
| Msa1374550 | Msa1423460 | 0.848653 | 5.342994e-60 | -8.615850e-47 |
| Msa1379970 | Msa1423460 | 0.850841 | 1.307829e-60 | -8.615850e-47 |
| Msa1394890 | Msa1423460 | 0.834921 | 2.265672e-56 | -8.615850e-47 |
| Msa1406780 | Msa1423460 | 0.855541 | 5.888775e-62 | -8.615850e-47 |
| Msa1420060 | Msa1423460 | 0.819434 | 1.163577e-52 | -8.615850e-47 |
| Msa1421550 | Msa1423460 | 0.876761 | 1.079902e-68 | -8.615850e-47 |
| Msa1423460 | Msa1431850 | 0.861151 | 1.254505e-63 | -8.615850e-47 |
| Msa1423460 | Msa1436570 | 0.807791 | 4.254181e-50 | -8.615850e-47 |
| Msa1423460 | Msa1455320 | 0.815248 | 1.018820e-51 | -8.615850e-47 |
| Msa1423460 | Msa1459530 | 0.823068 | 1.689793e-53 | -8.615850e-47 |
| Msa1423460 | Msa1461060 | 0.834006 | 3.846237e-56 | -8.615850e-47 |
| Msa0641250 | Msa1423460 | 0.837980 | 3.772436e-57 | -8.615850e-47 |
| Msa0669840 | Msa1423460 | 0.862820 | 3.866449e-64 | -8.615850e-47 |
| Msa0680150 | Msa1423460 | 0.801352 | 9.377561e-49 | -8.615850e-47 |
| Msa0739580 | Msa1423460 | 0.849149 | 3.892629e-60 | -8.615850e-47 |
| Msa0751890 | Msa1423460 | 0.807272 | 5.482563e-50 | -8.615850e-47 |
| Msa0764820 | Msa1423460 | 0.815848 | 7.492453e-52 | -8.615850e-47 |
| Msa0770290 | Msa1423460 | 0.819994 | 8.669792e-53 | -8.615850e-47 |
| Msa0782360 | Msa1423460 | 0.820874 | 5.445893e-53 | -8.615850e-47 |
| Msa0823400 | Msa1423460 | 0.802908 | 4.487294e-49 | -8.615850e-47 |
| Msa0828830 | Msa1423460 | 0.818489 | 1.908655e-52 | -8.615850e-47 |
| Msa0831940 | Msa1423460 | 0.804007 | 2.656242e-49 | -8.615850e-47 |
| Msa0124130 | Msa1423460 | 0.829472 | 5.049880e-55 | -8.615850e-47 |
| Msa0141120 | Msa1423460 | 0.838504 | 2.765324e-57 | -8.615850e-47 |
| Msa0149140 | Msa1423460 | 0.828298 | 9.716292e-55 | -8.615850e-47 |
| Msa0156250 | Msa1423460 | 0.840973 | 6.295621e-58 | -8.615850e-47 |
| Msa0157290 | Msa1423460 | 0.809078 | 2.260459e-50 | -8.615850e-47 |
| Msa0158600 | Msa1423460 | 0.812820 | 3.496966e-51 | -8.615850e-47 |
| Msa0185490 | Msa1423460 | 0.997430 | 2.135751e-242 | -8.615850e-47 |
| Msa0197100 | Msa1423460 | 0.827440 | 1.562951e-54 | -8.615850e-47 |
| Msa0197930 | Msa1423460 | 0.811996 | 5.293832e-51 | -8.615850e-47 |
| Msa0203030 | Msa1423460 | 0.803775 | 2.968169e-49 | -8.615850e-47 |
| Msa0212150 | Msa1423460 | 0.829685 | 4.483792e-55 | -8.615850e-47 |
| Msa0219190 | Msa1423460 | 0.802989 | 4.317361e-49 | -8.615850e-47 |
| Msa0221290 | Msa1423460 | 0.812624 | 3.859935e-51 | -8.615850e-47 |
| Msa1228190 | Msa1423460 | 0.849436 | 3.238266e-60 | -8.615850e-47 |
| Msa1271260 | Msa1423460 | 0.815476 | 9.066031e-52 | -8.615850e-47 |
| Msa1294290 | Msa1423460 | 0.857102 | 2.051956e-62 | -8.615850e-47 |
| Msa1305510 | Msa1423460 | 0.843911 | 1.047262e-58 | -8.615850e-47 |
| Msa0375680 | Msa1423460 | 0.818408 | 1.990897e-52 | -8.615850e-47 |
| Msa0392420 | Msa1423460 | 0.862158 | 6.179456e-64 | -8.615850e-47 |
| Msa0392460 | Msa1423460 | 0.861362 | 1.081975e-63 | -8.615850e-47 |
| Msa0392490 | Msa1423460 | 0.872548 | 2.922697e-67 | -8.615850e-47 |
| Msa0406000 | Msa1423460 | 0.882982 | 6.592490e-71 | -8.615850e-47 |
| Msa0415320 | Msa1423460 | 0.812816 | 3.505148e-51 | -8.615850e-47 |
| Msa0417440 | Msa1423460 | 0.805624 | 1.220282e-49 | -8.615850e-47 |
| Msa0424330 | Msa1423460 | 0.843192 | 1.629746e-58 | -8.615850e-47 |
| Msa0424340 | Msa1423460 | 0.823580 | 1.283463e-53 | -8.615850e-47 |
| Msa0424350 | Msa1423460 | 0.849281 | 3.575181e-60 | -8.615850e-47 |
| Msa0451400 | Msa1423460 | 0.880321 | 6.045403e-70 | -8.615850e-47 |
| Msa0996270 | Msa1423460 | 0.800833 | 1.197181e-48 | -8.615850e-47 |
| Msa0999300 | Msa1423460 | 0.855240 | 7.203456e-62 | -8.615850e-47 |
| Msa0999360 | Msa1423460 | 0.809548 | 1.791686e-50 | -8.615850e-47 |
| Msa0999410 | Msa1423460 | 0.805390 | 1.366460e-49 | -8.615850e-47 |
| Msa1001890 | Msa1423460 | 0.841679 | 4.104960e-58 | -8.615850e-47 |
| Msa1016600 | Msa1423460 | 0.816606 | 5.070068e-52 | -8.615850e-47 |
| Msa1037770 | Msa1423460 | 0.804581 | 2.016396e-49 | -8.615850e-47 |
| Msa1037890 | Msa1423460 | 0.816026 | 6.837760e-52 | -8.615850e-47 |
| Msa1037900 | Msa1423460 | 0.849852 | 2.477684e-60 | -8.615850e-47 |
| Msa1037910 | Msa1423460 | 0.822461 | 2.340133e-53 | -8.615850e-47 |
| Msa1041530 | Msa1423460 | 0.831575 | 1.544279e-55 | -8.615850e-47 |
| Msa1081570 | Msa1423460 | 0.831777 | 1.376920e-55 | -8.615850e-47 |
| Msa1084520 | Msa1423460 | 0.820631 | 6.195157e-53 | -8.615850e-47 |
| Msa0239030 | Msa1423460 | 0.824619 | 7.318856e-54 | -8.615850e-47 |
| Msa0252630 | Msa1423460 | 0.808555 | 2.924611e-50 | -8.615850e-47 |
| Msa0252770 | Msa1423460 | 0.836468 | 9.195878e-57 | -8.615850e-47 |
| Msa0276740 | Msa1423460 | 0.816834 | 4.508661e-52 | -8.615850e-47 |
| Msa0289920 | Msa1423460 | 0.813086 | 3.057432e-51 | -8.615850e-47 |
| Msa0298240 | Msa1423460 | 0.814653 | 1.380879e-51 | -8.615850e-47 |
| Msa0306120 | Msa1423460 | 0.822000 | 2.993787e-53 | -8.615850e-47 |
| Msa0316680 | Msa1423460 | 0.820980 | 5.149712e-53 | -8.615850e-47 |
| Msa0317280 | Msa1423460 | 0.801721 | 7.877321e-49 | -8.615850e-47 |
| Msa0317340 | Msa1423460 | 0.804326 | 2.279266e-49 | -8.615850e-47 |
| Msa0329620 | Msa1423460 | 0.837668 | 4.539009e-57 | -8.615850e-47 |
| Msa0343660 | Msa1423460 | 0.813155 | 2.953133e-51 | -8.615850e-47 |
| Msa0344570 | Msa1423460 | 0.859127 | 5.128247e-63 | -8.615850e-47 |
| Msa0359250 | Msa1423460 | 0.897759 | 1.029886e-76 | -8.615850e-47 |
| Msa1125810 | Msa1423460 | 0.805063 | 1.599233e-49 | -8.615850e-47 |
| Msa1127140 | Msa1423460 | 0.839960 | 1.158681e-57 | -8.615850e-47 |
| Msa1129960 | Msa1423460 | 0.837833 | 4.116724e-57 | -8.615850e-47 |
| Msa1129970 | Msa1423460 | 0.826113 | 3.241892e-54 | -8.615850e-47 |
| Msa1130010 | Msa1423460 | 0.808374 | 3.195734e-50 | -8.615850e-47 |
| Msa1145020 | Msa1423460 | 0.806671 | 7.346965e-50 | -8.615850e-47 |
| Msa1166400 | Msa1423460 | 0.828046 | 1.117446e-54 | -8.615850e-47 |
| Msa1169990 | Msa1423460 | 0.802651 | 5.071126e-49 | -8.615850e-47 |
| Msa1171310 | Msa1423460 | 0.801323 | 9.504690e-49 | -8.615850e-47 |
| Msa1201110 | Msa1423460 | 0.833531 | 5.056576e-56 | -8.615850e-47 |
| Msa1201160 | Msa1423460 | 0.867362 | 1.447215e-65 | -8.615850e-47 |
| Msa1218550 | Msa1423460 | 0.810518 | 1.107966e-50 | -8.615850e-47 |
| Msa0487570 | Msa1423460 | 0.866364 | 3.010285e-65 | -8.615850e-47 |
| Msa0487630 | Msa1423460 | 0.878003 | 3.989959e-69 | -8.615850e-47 |
| Msa0492190 | Msa1423460 | 0.861513 | 9.730536e-64 | -8.615850e-47 |
| Msa0515950 | Msa1423460 | 0.825000 | 5.950116e-54 | -8.615850e-47 |
| Msa0527550 | Msa1423460 | 0.815931 | 7.178508e-52 | -8.615850e-47 |
| Msa0534930 | Msa1423460 | 0.867423 | 1.383775e-65 | -8.615850e-47 |
| Msa0535040 | Msa1423460 | 0.861885 | 7.490921e-64 | -8.615850e-47 |
| Msa0537920 | Msa1423460 | 0.813052 | 3.111083e-51 | -8.615850e-47 |
| Msa0538220 | Msa1423460 | 0.805880 | 1.078037e-49 | -8.615850e-47 |
| Msa0591790 | Msa1423460 | 0.877234 | 7.400605e-69 | -8.615850e-47 |
| Msa0594090 | Msa1423460 | 0.848524 | 5.801441e-60 | -8.615850e-47 |
| Msa0844560 | Msa1423460 | 0.806993 | 6.278858e-50 | -8.615850e-47 |
| Msa0860280 | Msa1423460 | 0.836549 | 8.769404e-57 | -8.615850e-47 |
| Msa0867350 | Msa1423460 | 0.828619 | 8.131036e-55 | -8.615850e-47 |
| Msa0880140 | Msa1423460 | 0.812850 | 3.445175e-51 | -8.615850e-47 |
| Msa0880780 | Msa1423460 | 0.804916 | 1.716903e-49 | -8.615850e-47 |
| Msa0896540 | Msa1423460 | 0.809646 | 1.707216e-50 | -8.615850e-47 |
| Msa0898730 | Msa1423460 | 0.837254 | 5.791856e-57 | -8.615850e-47 |
| Msa0929870 | Msa1423460 | 0.841348 | 5.017389e-58 | -8.615850e-47 |
| Msa0936410 | Msa1423460 | 0.835294 | 1.824586e-56 | -8.615850e-47 |
| Msa0944760 | Msa1423460 | 0.995237 | 2.642247e-214 | -8.615850e-47 |
| Msa0944880 | Msa1423460 | 0.951231 | 3.154961e-109 | -8.615850e-47 |
| Msa0961560 | Msa1423460 | 0.810725 | 9.992074e-51 | -8.615850e-47 |
| Msa0973250 | Msa1423460 | 0.820918 | 5.320482e-53 | -8.615850e-47 |
| Msa0979510 | Msa1423460 | 0.801455 | 8.932390e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423460 | MtrunA17_Chr1g0188051 | 58.650 | 474 | 192 | 2 | 2 | 471 | 34 | 507 | 0.0 | 578 |
| Msa1423460 | MtrunA17_Chr1g0166191 | 58.491 | 477 | 188 | 4 | 2 | 471 | 40 | 513 | 0.0 | 571 |
| Msa1423460 | MtrunA17_Chr4g0063011 | 55.672 | 476 | 203 | 4 | 2 | 471 | 22 | 495 | 0.0 | 545 |
| Msa1423460 | MtrunA17_Chr6g0461631 | 96.958 | 263 | 8 | 0 | 217 | 479 | 3 | 265 | 0.0 | 541 |
| Msa1423460 | MtrunA17_Chr6g0480561 | 56.206 | 427 | 185 | 2 | 43 | 468 | 41 | 466 | 1.84e-175 | 501 |
| Msa1423460 | MtrunA17_Chr7g0276251 | 56.595 | 417 | 178 | 2 | 60 | 473 | 115 | 531 | 2.09e-171 | 493 |
| Msa1423460 | MtrunA17_Chr2g0306781 | 63.562 | 365 | 133 | 0 | 107 | 471 | 36 | 400 | 4.09e-171 | 487 |
| Msa1423460 | MtrunA17_Chr4g0035081 | 51.266 | 474 | 224 | 4 | 2 | 470 | 31 | 502 | 2.18e-170 | 489 |
| Msa1423460 | MtrunA17_Chr1g0209881 | 50.816 | 429 | 209 | 2 | 43 | 471 | 65 | 491 | 6.29e-159 | 459 |
| Msa1423460 | MtrunA17_Chr5g0423521 | 46.809 | 470 | 245 | 4 | 6 | 471 | 23 | 491 | 2.26e-154 | 448 |
| Msa1423460 | MtrunA17_Chr3g0136561 | 51.069 | 421 | 196 | 2 | 60 | 470 | 483 | 903 | 2.52e-154 | 461 |
| Msa1423460 | MtrunA17_Chr6g0461621 | 92.140 | 229 | 18 | 0 | 1 | 229 | 1 | 229 | 9.81e-153 | 434 |
| Msa1423460 | MtrunA17_Chr2g0277841 | 48.786 | 412 | 206 | 4 | 63 | 472 | 45 | 453 | 3.90e-140 | 410 |
| Msa1423460 | MtrunA17_Chr7g0250661 | 63.668 | 289 | 105 | 0 | 183 | 471 | 2 | 290 | 9.41e-140 | 403 |
| Msa1423460 | MtrunA17_Chr2g0295781 | 47.317 | 410 | 212 | 3 | 63 | 470 | 44 | 451 | 4.98e-130 | 384 |
| Msa1423460 | MtrunA17_Chr2g0282281 | 46.517 | 402 | 209 | 3 | 62 | 462 | 107 | 503 | 2.76e-127 | 379 |
| Msa1423460 | MtrunA17_Chr7g0276241 | 56.122 | 294 | 122 | 2 | 183 | 474 | 2 | 290 | 8.27e-119 | 350 |
| Msa1423460 | MtrunA17_Chr1g0204301 | 40.441 | 408 | 242 | 1 | 62 | 468 | 77 | 484 | 1.13e-104 | 320 |
| Msa1423460 | MtrunA17_Chr4g0026871 | 60.699 | 229 | 89 | 1 | 245 | 472 | 1 | 229 | 3.95e-100 | 300 |
| Msa1423460 | MtrunA17_Chr4g0030591 | 38.761 | 436 | 238 | 7 | 63 | 478 | 27 | 453 | 5.12e-98 | 303 |
| Msa1423460 | MtrunA17_Chr4g0030601 | 38.208 | 424 | 248 | 6 | 63 | 478 | 27 | 444 | 1.57e-95 | 296 |
| Msa1423460 | MtrunA17_Chr3g0115021 | 40.194 | 413 | 239 | 4 | 60 | 468 | 75 | 483 | 5.38e-95 | 295 |
| Msa1423460 | MtrunA17_Chr3g0115041 | 40.194 | 413 | 239 | 4 | 60 | 468 | 75 | 483 | 5.55e-95 | 295 |
| Msa1423460 | MtrunA17_Chr1g0212951 | 35.683 | 454 | 255 | 8 | 45 | 467 | 4 | 451 | 2.73e-93 | 291 |
| Msa1423460 | MtrunA17_Chr6g0469631 | 41.626 | 406 | 229 | 4 | 67 | 468 | 81 | 482 | 4.73e-93 | 290 |
| Msa1423460 | MtrunA17_Chr4g0030581 | 37.788 | 434 | 244 | 7 | 63 | 478 | 27 | 452 | 1.08e-92 | 289 |
| Msa1423460 | MtrunA17_Chr2g0327721 | 38.515 | 431 | 226 | 10 | 63 | 467 | 27 | 444 | 1.64e-92 | 289 |
| Msa1423460 | MtrunA17_Chr4g0026791 | 60.894 | 179 | 69 | 1 | 245 | 422 | 1 | 179 | 2.93e-74 | 231 |
| Msa1423460 | MtrunA17_Chr4g0026721 | 60.870 | 161 | 63 | 0 | 312 | 472 | 1 | 161 | 1.27e-67 | 214 |
| Msa1423460 | MtrunA17_Chr4g0026861 | 51.445 | 173 | 83 | 1 | 49 | 220 | 43 | 215 | 1.92e-56 | 186 |
| Msa1423460 | MtrunA17_Chr7g0250651 | 41.667 | 156 | 83 | 4 | 2 | 151 | 33 | 186 | 1.61e-29 | 114 |
| Msa1423460 | MtrunA17_Chr4g0026801 | 39.241 | 158 | 90 | 3 | 12 | 163 | 1 | 158 | 2.38e-28 | 110 |
| Msa1423460 | MtrunA17_Chr4g0040421 | 23.462 | 260 | 162 | 8 | 183 | 437 | 152 | 379 | 6.65e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1423460 | AT1G04220.1 | 56.108 | 483 | 197 | 6 | 2 | 471 | 36 | 516 | 0.0 | 560 |
| Msa1423460 | AT2G26640.1 | 56.303 | 476 | 200 | 4 | 2 | 471 | 31 | 504 | 0.0 | 550 |
| Msa1423460 | AT5G43760.1 | 60.369 | 434 | 162 | 4 | 48 | 471 | 88 | 521 | 0.0 | 541 |
| Msa1423460 | AT2G16280.1 | 51.471 | 476 | 220 | 4 | 2 | 470 | 39 | 510 | 2.11e-174 | 500 |
| Msa1423460 | AT1G19440.1 | 51.261 | 476 | 221 | 4 | 2 | 470 | 43 | 514 | 5.00e-174 | 499 |
| Msa1423460 | AT4G34510.1 | 50.844 | 474 | 226 | 5 | 2 | 472 | 18 | 487 | 3.20e-172 | 493 |
| Msa1423460 | AT1G01120.1 | 53.162 | 427 | 190 | 2 | 52 | 468 | 98 | 524 | 1.31e-171 | 493 |
| Msa1423460 | AT2G46720.1 | 50.227 | 440 | 213 | 3 | 32 | 468 | 27 | 463 | 8.64e-165 | 474 |
| Msa1423460 | AT1G25450.1 | 48.529 | 476 | 236 | 4 | 2 | 471 | 15 | 487 | 2.23e-158 | 458 |
| Msa1423460 | AT3G10280.1 | 49.091 | 440 | 211 | 4 | 32 | 468 | 27 | 456 | 2.50e-157 | 454 |
| Msa1423460 | AT4G34250.1 | 48.649 | 481 | 230 | 6 | 6 | 473 | 14 | 490 | 8.10e-157 | 454 |
| Msa1423460 | AT1G68530.1 | 46.751 | 477 | 243 | 5 | 2 | 471 | 20 | 492 | 1.13e-156 | 454 |
| Msa1423460 | AT4G34520.1 | 52.459 | 427 | 190 | 4 | 55 | 470 | 66 | 490 | 2.71e-155 | 451 |
| Msa1423460 | AT2G15090.1 | 52.000 | 425 | 194 | 5 | 55 | 470 | 56 | 479 | 1.68e-154 | 448 |
| Msa1423460 | AT2G26250.1 | 43.976 | 498 | 250 | 2 | 2 | 470 | 53 | 550 | 2.27e-153 | 447 |
| Msa1423460 | AT1G71160.1 | 45.991 | 424 | 227 | 2 | 45 | 468 | 25 | 446 | 6.93e-135 | 397 |
| Msa1423460 | AT5G49070.1 | 45.154 | 423 | 228 | 3 | 51 | 471 | 36 | 456 | 1.14e-124 | 371 |
| Msa1423460 | AT3G52160.1 | 43.373 | 415 | 203 | 3 | 46 | 459 | 66 | 449 | 1.55e-117 | 353 |
| Msa1423460 | AT3G52160.2 | 45.604 | 364 | 167 | 2 | 96 | 459 | 4 | 336 | 8.33e-110 | 329 |
| Msa1423460 | AT2G28630.2 | 38.462 | 429 | 243 | 7 | 68 | 478 | 32 | 457 | 2.58e-100 | 309 |
| Msa1423460 | AT2G28630.1 | 38.462 | 429 | 243 | 7 | 68 | 478 | 32 | 457 | 2.58e-100 | 309 |
| Msa1423460 | AT1G07720.1 | 38.679 | 424 | 238 | 7 | 63 | 467 | 27 | 447 | 2.70e-97 | 301 |
| Msa1423460 | AT5G04530.1 | 40.326 | 429 | 231 | 10 | 56 | 467 | 17 | 437 | 2.97e-97 | 301 |
| Msa1423460 | AT1G07720.2 | 38.679 | 424 | 238 | 7 | 63 | 467 | 70 | 490 | 3.27e-97 | 303 |
| Msa1423460 | AT1G68530.2 | 48.387 | 279 | 142 | 1 | 49 | 327 | 73 | 349 | 5.63e-89 | 277 |
| Msa1423460 | AT5G49070.2 | 41.219 | 279 | 163 | 1 | 51 | 329 | 36 | 313 | 1.54e-65 | 214 |
| Msa1423460 | AT4G34850.2 | 25.306 | 245 | 145 | 9 | 201 | 436 | 91 | 306 | 4.44e-12 | 67.4 |
| Msa1423460 | AT4G34850.1 | 25.306 | 245 | 145 | 9 | 201 | 436 | 164 | 379 | 7.31e-12 | 67.4 |
Find 72 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATATGGCAAATGGCTTT+TGG | 0.246325 | tig0025556:-24354 | Msa1423460:CDS |
| GTTAATCATTATAAACTTAG+AGG | 0.259701 | tig0025556:-27028 | Msa1423460:CDS |
| TTGGATAGAGCAAAACATTT+TGG | 0.264127 | tig0025556:-27313 | Msa1423460:CDS |
| AGCACTAAAGCATATGAGTT+TGG | 0.291741 | tig0025556:+24972 | None:intergenic |
| TCCATTAGTCCTCCCAATTT+CGG | 0.294314 | tig0025556:-24652 | Msa1423460:CDS |
| GGAATTTCTAATAATGCTTC+AGG | 0.313917 | tig0025556:+27214 | None:intergenic |
| TCCGAAATTGGGAGGACTAA+TGG | 0.324601 | tig0025556:+24651 | None:intergenic |
| GTTCAATTCAACTACATAAC+TGG | 0.326614 | tig0025556:+24039 | None:intergenic |
| AGCTAAGGGGAGAGTTAAAA+AGG | 0.330815 | tig0025556:-24382 | Msa1423460:CDS |
| AGATTATTGATTATAATATT+CGG | 0.334053 | tig0025556:-24062 | Msa1423460:three_prime_UTR |
| AAAGTTGAAGCTAAAGATAT+TGG | 0.336152 | tig0025556:-27109 | Msa1423460:CDS |
| TGTGTCTAGAAAGAATAATT+AGG | 0.340619 | tig0025556:-24161 | Msa1423460:three_prime_UTR |
| TTGTTCATTGGCAATGGAAC+AGG | 0.342492 | tig0025556:+24234 | None:intergenic |
| TAACTTTCATGTCATGTTTG+TGG | 0.344699 | tig0025556:-24188 | Msa1423460:three_prime_UTR |
| TAGAAATGCTTCAACATTGT+TGG | 0.353388 | tig0025556:+27583 | None:intergenic |
| AACTTAAAATTCGGCATGTA+TGG | 0.357301 | tig0025556:+24570 | None:intergenic |
| TTAATCATATGTTTGTTCAT+TGG | 0.363214 | tig0025556:+24222 | None:intergenic |
| TTGCACAAAAGAAATGTTGT+TGG | 0.390520 | tig0025556:-27332 | Msa1423460:CDS |
| GATCTATAATCTTAGTGGTA+TGG | 0.390916 | tig0025556:-26996 | Msa1423460:CDS |
| GCACTAAAGCATATGAGTTT+GGG | 0.397910 | tig0025556:+24973 | None:intergenic |
| TACTAATTGTCTCTTTCGAA+TGG | 0.399551 | tig0025556:-24892 | Msa1423460:CDS |
| AATATCTTTAGCTTCAACTT+TGG | 0.416100 | tig0025556:+27111 | None:intergenic |
| TCGAACGCTAACTTAAAATT+CGG | 0.417831 | tig0025556:+24561 | None:intergenic |
| TTAAGGTTAATACTGCTGTT+TGG | 0.420779 | tig0025556:-24323 | Msa1423460:CDS |
| CTATATAGTGTCATTCTTGA+AGG | 0.424575 | tig0025556:+24456 | None:intergenic |
| ATCTATAATCTTAGTGGTAT+GGG | 0.428495 | tig0025556:-26995 | Msa1423460:CDS |
| TTTATCAATATTGATGGTTG+AGG | 0.454477 | tig0025556:+27460 | None:intergenic |
| TGTTGTTGAAAAGGATAGCT+AGG | 0.454589 | tig0025556:+27624 | None:intergenic |
| GTGTGTGAATGTTGTTGAAA+AGG | 0.454604 | tig0025556:+27615 | None:intergenic |
| GGGACATAAAATATGGCAAA+TGG | 0.457927 | tig0025556:-24361 | Msa1423460:CDS |
| ACTAATTGTCTCTTTCGAAT+GGG | 0.459375 | tig0025556:-24891 | Msa1423460:CDS |
| TCATCAAGTGTTAGTCTTGG+TGG | 0.459635 | tig0025556:+27193 | None:intergenic |
| AAATACCTCAAGAAGACGTT+TGG | 0.460466 | tig0025556:+26940 | None:intergenic |
| ACACATCATCAAGTTCTGTT+TGG | 0.465892 | tig0025556:-24425 | Msa1423460:CDS |
| CGATGGATGACTTGAGAGTA+GGG | 0.466110 | tig0025556:+24857 | None:intergenic |
| AGAATGACACTATATAGATA+TGG | 0.470646 | tig0025556:-24450 | Msa1423460:CDS |
| AGTGGTATGGGATGCAGTGC+TGG | 0.470681 | tig0025556:-26983 | Msa1423460:CDS |
| ATATGTTTGTTCATTGGCAA+TGG | 0.471516 | tig0025556:+24228 | None:intergenic |
| GCTTCATCAAGTGTTAGTCT+TGG | 0.477201 | tig0025556:+27190 | None:intergenic |
| TTCGAAAGAGACAATTAGTA+AGG | 0.478311 | tig0025556:+24895 | None:intergenic |
| ATTGTCTTATTGTGAAGCTA+AGG | 0.483820 | tig0025556:-24397 | Msa1423460:CDS |
| CATGAAAATGTAGTAAACTA+AGG | 0.486928 | tig0025556:+27417 | None:intergenic |
| TGTGACATGCAAAATCTACT+AGG | 0.521489 | tig0025556:+27374 | None:intergenic |
| TTTGAGCGGCTACGGTCCGA+TGG | 0.522197 | tig0025556:+24840 | None:intergenic |
| TTGTCTTATTGTGAAGCTAA+GGG | 0.526933 | tig0025556:-24396 | Msa1423460:CDS |
| CCGATGGATGACTTGAGAGT+AGG | 0.528757 | tig0025556:+24856 | None:intergenic |
| CAATTAGTAAGGATCATTGA+AGG | 0.529851 | tig0025556:+24906 | None:intergenic |
| TTAATCATTATAAACTTAGA+GGG | 0.529909 | tig0025556:-27027 | Msa1423460:CDS |
| AGGATCTCATGAATGTTGCT+AGG | 0.531519 | tig0025556:-24707 | Msa1423460:CDS |
| GCGGTAGAGCGGTTCTTGAT+CGG | 0.540567 | tig0025556:-24518 | Msa1423460:CDS |
| AATTGTCTCTTTCGAATGGG+TGG | 0.541404 | tig0025556:-24888 | Msa1423460:CDS |
| TGCTTCAGGAACATAAGTGA+TGG | 0.543655 | tig0025556:+27228 | None:intergenic |
| TAAAGATATTGGAATTCTTG+TGG | 0.557701 | tig0025556:-27098 | Msa1423460:CDS |
| GACTAACACTTGATGAAGCA+AGG | 0.570909 | tig0025556:-27186 | Msa1423460:CDS |
| GGATCTCATGAATGTTGCTA+GGG | 0.577726 | tig0025556:-24706 | Msa1423460:CDS |
| TCTCTTTCGAATGGGTGGAT+CGG | 0.581140 | tig0025556:-24883 | Msa1423460:CDS |
| GTAGTAGCTACATCATGTGT+AGG | 0.584328 | tig0025556:-27514 | Msa1423460:CDS |
| AATTAGTAAGGATCATTGAA+GGG | 0.585870 | tig0025556:+24907 | None:intergenic |
| CAGTGCTGGTGTTATTGCAG+TGG | 0.587920 | tig0025556:-26969 | Msa1423460:CDS |
| TGTTCATTGGCAATGGAACA+GGG | 0.590457 | tig0025556:+24235 | None:intergenic |
| CTTTGCCAAACGTCTTCTTG+AGG | 0.595847 | tig0025556:-26945 | Msa1423460:intron |
| CATGCATACGGGCGGTAGAG+CGG | 0.599254 | tig0025556:-24529 | Msa1423460:CDS |
| GCTTCAGGAACATAAGTGAT+GGG | 0.600651 | tig0025556:+27229 | None:intergenic |
| ACAATAGTATCTGAAAGTGA+TGG | 0.605880 | tig0025556:+27049 | None:intergenic |
| GTTGTTGAAAAGGATAGCTA+GGG | 0.606417 | tig0025556:+27625 | None:intergenic |
| GTATCTGAAAGTGATGGTGT+AGG | 0.606742 | tig0025556:+27055 | None:intergenic |
| ACTCGGTGTTAAACTATCGA+AGG | 0.617292 | tig0025556:-24727 | Msa1423460:CDS |
| TGTCTTATTGTGAAGCTAAG+GGG | 0.629341 | tig0025556:-24395 | Msa1423460:CDS |
| CGTACACACATAACATCGCT+CGG | 0.629342 | tig0025556:-24675 | Msa1423460:CDS |
| CCTACTCTCAAGTCATCCAT+CGG | 0.642889 | tig0025556:-24856 | Msa1423460:CDS |
| CAAATCTCAAGCATATACAA+AGG | 0.644919 | tig0025556:-24936 | Msa1423460:CDS |
| CATTCGTTGCGCACTCACGT+AGG | 0.677333 | tig0025556:-24804 | Msa1423460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAATTATAAAAGAG+TGG | - | tig0025556:25331-25350 | Msa1423460:intron | 10.0% |
| !! | TAAAAAAATTATAAAAGAGT+GGG | - | tig0025556:25332-25351 | Msa1423460:intron | 10.0% |
| !!! | TATTTTTCTTTTTCTTTTTT+TGG | + | tig0025556:25708-25727 | None:intergenic | 10.0% |
| !!! | ATGTATATGTTATTTTTTTT+CGG | + | tig0025556:25885-25904 | None:intergenic | 10.0% |
| !!! | ATTATTTTTGTTTTTTTTGT+TGG | + | tig0025556:26288-26307 | None:intergenic | 10.0% |
| !!! | AGATTATTGATTATAATATT+CGG | - | tig0025556:27574-27593 | Msa1423460:CDS | 10.0% |
| !!! | AATGATTTTATCAATATTGA+TGG | + | tig0025556:24185-24204 | None:intergenic | 15.0% |
| !! | TTAATCATTATAAACTTAGA+GGG | - | tig0025556:24609-24628 | Msa1423460:CDS | 15.0% |
| !!! | AAAGAGTACAAAATTATTTA+AGG | - | tig0025556:24783-24802 | Msa1423460:CDS | 15.0% |
| !! | AAAAAAAAAATGAAAATGTC+TGG | + | tig0025556:24933-24952 | None:intergenic | 15.0% |
| !!! | TATTTTATCTAAAAGGTTAT+TGG | - | tig0025556:25153-25172 | Msa1423460:intron | 15.0% |
| !! | TTATATGAGAAAACAATATA+TGG | + | tig0025556:26121-26140 | None:intergenic | 15.0% |
| !!! | ATATTGTTTTCTCATATAAT+TGG | - | tig0025556:26122-26141 | Msa1423460:intron | 15.0% |
| !!! | TGAAGATATTTTATAATTGA+TGG | - | tig0025556:26403-26422 | Msa1423460:intron | 15.0% |
| !!! | GTTTGTTAAATTTATTTGTA+GGG | + | tig0025556:26557-26576 | None:intergenic | 15.0% |
| !!! | TGTTTGTTAAATTTATTTGT+AGG | + | tig0025556:26558-26577 | None:intergenic | 15.0% |
| !!! | TGATTCATAAGATTTTAGAA+AGG | - | tig0025556:24372-24391 | Msa1423460:CDS | 20.0% |
| !!! | GAATCAAATTTAGTTCTTTT+TGG | - | tig0025556:24476-24495 | Msa1423460:CDS | 20.0% |
| !! | GTTAATCATTATAAACTTAG+AGG | - | tig0025556:24608-24627 | Msa1423460:CDS | 20.0% |
| !!! | ATTTTGATCTATAATCTTAG+TGG | - | tig0025556:24635-24654 | Msa1423460:CDS | 20.0% |
| !!! | ACTATTTTATACTTGTTTGT+TGG | - | tig0025556:24844-24863 | Msa1423460:CDS | 20.0% |
| !! | CCTCTAGTATTAAAATATTT+GGG | + | tig0025556:24982-25001 | None:intergenic | 20.0% |
| !! | ACCTCTAGTATTAAAATATT+TGG | + | tig0025556:24983-25002 | None:intergenic | 20.0% |
| !! | AACTATATGAAATTGATGAA+TGG | + | tig0025556:25215-25234 | None:intergenic | 20.0% |
| !!! | CTGCTATTAATTTTTTTTGA+AGG | + | tig0025556:25277-25296 | None:intergenic | 20.0% |
| !! | GAGATATCAATATGTATTTA+TGG | - | tig0025556:25296-25315 | Msa1423460:intron | 20.0% |
| !! | GTTATTTACATATAGCAAAA+GGG | - | tig0025556:25437-25456 | Msa1423460:intron | 20.0% |
| !!! | ACAAATAAAAAAAGTGTAGT+TGG | - | tig0025556:25575-25594 | Msa1423460:intron | 20.0% |
| !! | AAAATAAAATATGCAAGATC+CGG | - | tig0025556:25839-25858 | Msa1423460:intron | 20.0% |
| !!! | AAGAGTTTTGCTATTTATTA+TGG | - | tig0025556:25943-25962 | Msa1423460:intron | 20.0% |
| !! | TTAAAAATGTTCTCATATAG+TGG | + | tig0025556:26082-26101 | None:intergenic | 20.0% |
| !! | CAGAATCTTTAATTCAATAA+TGG | + | tig0025556:26230-26249 | None:intergenic | 20.0% |
| !! | ATAATCAAGCTTAATTAGTT+AGG | + | tig0025556:26619-26638 | None:intergenic | 20.0% |
| !! | TTAAAAAGGGACATAAAATA+TGG | - | tig0025556:27268-27287 | Msa1423460:CDS | 20.0% |
| !! | TTAATCATATGTTTGTTCAT+TGG | + | tig0025556:27417-27436 | None:intergenic | 20.0% |
| !! | TTTATCAATATTGATGGTTG+AGG | + | tig0025556:24179-24198 | None:intergenic | 25.0% |
| ! | CATGAAAATGTAGTAAACTA+AGG | + | tig0025556:24222-24241 | None:intergenic | 25.0% |
| !! | TCTACTAGGTATATTTTGTT+TGG | + | tig0025556:24251-24270 | None:intergenic | 25.0% |
| !!! | GTGCAAATACAATTGTTTTT+TGG | + | tig0025556:24290-24309 | None:intergenic | 25.0% |
| !! | AATATCTTTAGCTTCAACTT+TGG | + | tig0025556:24528-24547 | None:intergenic | 25.0% |
| ! | AAAGTTGAAGCTAAAGATAT+TGG | - | tig0025556:24527-24546 | Msa1423460:CDS | 25.0% |
| ! | TAAAGATATTGGAATTCTTG+TGG | - | tig0025556:24538-24557 | Msa1423460:CDS | 25.0% |
| ! | ATCTATAATCTTAGTGGTAT+GGG | - | tig0025556:24641-24660 | Msa1423460:CDS | 25.0% |
| !!! | CCCAAATATTTTAATACTAG+AGG | - | tig0025556:24979-24998 | Msa1423460:CDS | 25.0% |
| !!! | CGGTTTTAGTTGTTTTTTTT+TGG | - | tig0025556:25415-25434 | Msa1423460:intron | 25.0% |
| ! | GGTTATTTACATATAGCAAA+AGG | - | tig0025556:25436-25455 | Msa1423460:intron | 25.0% |
| !! | CATTAGCTGTATTAATTTGA+AGG | - | tig0025556:25617-25636 | Msa1423460:intron | 25.0% |
| ! | AAATAAAATATGCAAGATCC+GGG | - | tig0025556:25840-25859 | Msa1423460:intron | 25.0% |
| !!! | ATGTTATTTTTTTTCGGTAG+TGG | + | tig0025556:25879-25898 | None:intergenic | 25.0% |
| !!! | ATACTGGAAGATACTTTTTT+TGG | + | tig0025556:26149-26168 | None:intergenic | 25.0% |
| ! | TATTTATGACATGCAATTAC+AGG | - | tig0025556:26636-26655 | Msa1423460:intron | 25.0% |
| ! | AATTAGTAAGGATCATTGAA+GGG | + | tig0025556:26732-26751 | None:intergenic | 25.0% |
| ! | ATGTGAAAAATTTAGTTGAG+AGG | - | tig0025556:27019-27038 | Msa1423460:CDS | 25.0% |
| ! | AGAATGACACTATATAGATA+TGG | - | tig0025556:27186-27205 | Msa1423460:CDS | 25.0% |
| !!! | CAAGCATTTTTCAATGATTT+AGG | + | tig0025556:27360-27379 | None:intergenic | 25.0% |
| ! | CTAAATCATTGAAAAATGCT+TGG | - | tig0025556:27358-27377 | Msa1423460:CDS | 25.0% |
| ! | TGTGTCTAGAAAGAATAATT+AGG | - | tig0025556:27475-27494 | Msa1423460:CDS | 25.0% |
| TAGAAATGCTTCAACATTGT+TGG | + | tig0025556:24056-24075 | None:intergenic | 30.0% | |
| TTGCACAAAAGAAATGTTGT+TGG | - | tig0025556:24304-24323 | Msa1423460:CDS | 30.0% | |
| ! | TTGGATAGAGCAAAACATTT+TGG | - | tig0025556:24323-24342 | Msa1423460:CDS | 30.0% |
| !! | CATAAGATTTTAGAAAGGTC+AGG | - | tig0025556:24377-24396 | Msa1423460:CDS | 30.0% |
| GGAATTTCTAATAATGCTTC+AGG | + | tig0025556:24425-24444 | None:intergenic | 30.0% | |
| ACAATAGTATCTGAAAGTGA+TGG | + | tig0025556:24590-24609 | None:intergenic | 30.0% | |
| GATCTATAATCTTAGTGGTA+TGG | - | tig0025556:24640-24659 | Msa1423460:CDS | 30.0% | |
| ! | TGATATTGCTTCTTGTTTGT+CGG | - | tig0025556:24820-24839 | Msa1423460:CDS | 30.0% |
| AAAATATTTGGGTCTCTCAA+TGG | + | tig0025556:24971-24990 | None:intergenic | 30.0% | |
| AATAAAATATGCAAGATCCG+GGG | - | tig0025556:25841-25860 | Msa1423460:intron | 30.0% | |
| GTGTGAATTTGTATCATTTG+CGG | + | tig0025556:26009-26028 | None:intergenic | 30.0% | |
| CAAATCTCAAGCATATACAA+AGG | - | tig0025556:26700-26719 | Msa1423460:intron | 30.0% | |
| CAATTAGTAAGGATCATTGA+AGG | + | tig0025556:26733-26752 | None:intergenic | 30.0% | |
| TTCGAAAGAGACAATTAGTA+AGG | + | tig0025556:26744-26763 | None:intergenic | 30.0% | |
| TACTAATTGTCTCTTTCGAA+TGG | - | tig0025556:26744-26763 | Msa1423460:intron | 30.0% | |
| ACTAATTGTCTCTTTCGAAT+GGG | - | tig0025556:26745-26764 | Msa1423460:intron | 30.0% | |
| GAAGACGAAAAAGAAATACT+CGG | - | tig0025556:26892-26911 | Msa1423460:intron | 30.0% | |
| ! | ACTTGAGTTTTTCCGAAATT+GGG | + | tig0025556:26999-27018 | None:intergenic | 30.0% |
| ! | TACTTGAGTTTTTCCGAAAT+TGG | + | tig0025556:27000-27019 | None:intergenic | 30.0% |
| AACTTAAAATTCGGCATGTA+TGG | + | tig0025556:27069-27088 | None:intergenic | 30.0% | |
| TCGAACGCTAACTTAAAATT+CGG | + | tig0025556:27078-27097 | None:intergenic | 30.0% | |
| !! | TGAGCTTGATGATTTTCATA+TGG | - | tig0025556:27155-27174 | Msa1423460:CDS | 30.0% |
| ! | CTATATAGTGTCATTCTTGA+AGG | + | tig0025556:27183-27202 | None:intergenic | 30.0% |
| ! | ATTGTCTTATTGTGAAGCTA+AGG | - | tig0025556:27239-27258 | Msa1423460:CDS | 30.0% |
| ! | TTGTCTTATTGTGAAGCTAA+GGG | - | tig0025556:27240-27259 | Msa1423460:CDS | 30.0% |
| ! | AAAATATGGCAAATGGCTTT+TGG | - | tig0025556:27282-27301 | Msa1423460:CDS | 30.0% |
| TTAAGGTTAATACTGCTGTT+TGG | - | tig0025556:27313-27332 | Msa1423460:CDS | 30.0% | |
| ATCATTGAAAAATGCTTGGA+TGG | - | tig0025556:27362-27381 | Msa1423460:CDS | 30.0% | |
| ATATGTTTGTTCATTGGCAA+TGG | + | tig0025556:27411-27430 | None:intergenic | 30.0% | |
| TAACTTTCATGTCATGTTTG+TGG | - | tig0025556:27448-27467 | Msa1423460:CDS | 30.0% | |
| GTTCAATTCAACTACATAAC+TGG | + | tig0025556:27600-27619 | None:intergenic | 30.0% | |
| GTTGTTGAAAAGGATAGCTA+GGG | + | tig0025556:24014-24033 | None:intergenic | 35.0% | |
| TGTTGTTGAAAAGGATAGCT+AGG | + | tig0025556:24015-24034 | None:intergenic | 35.0% | |
| GTGTGTGAATGTTGTTGAAA+AGG | + | tig0025556:24024-24043 | None:intergenic | 35.0% | |
| TGTGACATGCAAAATCTACT+AGG | + | tig0025556:24265-24284 | None:intergenic | 35.0% | |
| !! | ATTTTAGAAAGGTCAGGTGT+GGG | - | tig0025556:24383-24402 | Msa1423460:CDS | 35.0% |
| AAATACCTCAAGAAGACGTT+TGG | + | tig0025556:24699-24718 | None:intergenic | 35.0% | |
| !!! | TATTTTTTTTCGGTAGTGGC+CGG | + | tig0025556:25875-25894 | None:intergenic | 35.0% |
| TAGTGGTGAAATAGATACAG+TGG | + | tig0025556:26065-26084 | None:intergenic | 35.0% | |
| GTTTCACTGTCAATCATCAT+AGG | - | tig0025556:26203-26222 | Msa1423460:intron | 35.0% | |
| TGTGCTAAGCTCACTTATTA+AGG | + | tig0025556:26531-26550 | None:intergenic | 35.0% | |
| CAAATTACATGTAGCTAGCA+AGG | + | tig0025556:26594-26613 | None:intergenic | 35.0% | |
| GCACTAAAGCATATGAGTTT+GGG | + | tig0025556:26666-26685 | None:intergenic | 35.0% | |
| AGCACTAAAGCATATGAGTT+TGG | + | tig0025556:26667-26686 | None:intergenic | 35.0% | |
| !! | GCATCAACTGATATTTTGAG+CGG | + | tig0025556:26813-26832 | None:intergenic | 35.0% |
| ! | CGATCAATTTTGCATGCATA+CGG | - | tig0025556:27095-27114 | Msa1423460:CDS | 35.0% |
| ! | GATCAATTTTGCATGCATAC+GGG | - | tig0025556:27096-27115 | Msa1423460:CDS | 35.0% |
| ACACATCATCAAGTTCTGTT+TGG | - | tig0025556:27211-27230 | Msa1423460:CDS | 35.0% | |
| ! | TGTCTTATTGTGAAGCTAAG+GGG | - | tig0025556:27241-27260 | Msa1423460:CDS | 35.0% |
| GGGACATAAAATATGGCAAA+TGG | - | tig0025556:27275-27294 | Msa1423460:CDS | 35.0% | |
| GTAGTAGCTACATCATGTGT+AGG | - | tig0025556:24122-24141 | Msa1423460:three_prime_UTR | 40.0% | |
| !! | GATTTTAGAAAGGTCAGGTG+TGG | - | tig0025556:24382-24401 | Msa1423460:CDS | 40.0% |
| GCTTCAGGAACATAAGTGAT+GGG | + | tig0025556:24410-24429 | None:intergenic | 40.0% | |
| TGCTTCAGGAACATAAGTGA+TGG | + | tig0025556:24411-24430 | None:intergenic | 40.0% | |
| !! | TCATCAAGTGTTAGTCTTGG+TGG | + | tig0025556:24446-24465 | None:intergenic | 40.0% |
| ! | GCTTCATCAAGTGTTAGTCT+TGG | + | tig0025556:24449-24468 | None:intergenic | 40.0% |
| GACTAACACTTGATGAAGCA+AGG | - | tig0025556:24450-24469 | Msa1423460:CDS | 40.0% | |
| ! | GTATCTGAAAGTGATGGTGT+AGG | + | tig0025556:24584-24603 | None:intergenic | 40.0% |
| ACCTTAGTCCTACTCAGATA+CGG | + | tig0025556:25391-25410 | None:intergenic | 40.0% | |
| TGAGTAGGACTAAGGTAGTT+CGG | - | tig0025556:25395-25414 | Msa1423460:intron | 40.0% | |
| ! | TGAGTTTAGCTCAGTTGGTT+GGG | - | tig0025556:25807-25826 | Msa1423460:intron | 40.0% |
| !!! | ATTTTTTTTCGGTAGTGGCC+GGG | + | tig0025556:25874-25893 | None:intergenic | 40.0% |
| CTGTGACTGAACACATATAC+TGG | + | tig0025556:26165-26184 | None:intergenic | 40.0% | |
| AATTGTCTCTTTCGAATGGG+TGG | - | tig0025556:26748-26767 | Msa1423460:intron | 40.0% | |
| !! | ACTGATATTTTGAGCGGCTA+CGG | + | tig0025556:26807-26826 | None:intergenic | 40.0% |
| !! | ACTCGGTGTTAAACTATCGA+AGG | - | tig0025556:26909-26928 | Msa1423460:intron | 40.0% |
| AGGATCTCATGAATGTTGCT+AGG | - | tig0025556:26929-26948 | Msa1423460:intron | 40.0% | |
| GGATCTCATGAATGTTGCTA+GGG | - | tig0025556:26930-26949 | Msa1423460:intron | 40.0% | |
| TCCATTAGTCCTCCCAATTT+CGG | - | tig0025556:26984-27003 | Msa1423460:CDS | 40.0% | |
| ! | TGAGTTTTTCCGAAATTGGG+AGG | + | tig0025556:26996-27015 | None:intergenic | 40.0% |
| AGCTAAGGGGAGAGTTAAAA+AGG | - | tig0025556:27254-27273 | Msa1423460:CDS | 40.0% | |
| GCTAAGGGGAGAGTTAAAAA+GGG | - | tig0025556:27255-27274 | Msa1423460:CDS | 40.0% | |
| ! | GGCTTTTGGATCTGGATTTA+AGG | - | tig0025556:27296-27315 | Msa1423460:CDS | 40.0% |
| TGTTCATTGGCAATGGAACA+GGG | + | tig0025556:27404-27423 | None:intergenic | 40.0% | |
| TTGTTCATTGGCAATGGAAC+AGG | + | tig0025556:27405-27424 | None:intergenic | 40.0% | |
| CTTTGCCAAACGTCTTCTTG+AGG | - | tig0025556:24691-24710 | Msa1423460:CDS | 45.0% | |
| CCTTAGTCCTACTCAGATAC+GGG | + | tig0025556:25390-25409 | None:intergenic | 45.0% | |
| ! | GTGAGTTTAGCTCAGTTGGT+TGG | - | tig0025556:25806-25825 | Msa1423460:intron | 45.0% |
| !!! | TTTTTTTTCGGTAGTGGCCG+GGG | + | tig0025556:25873-25892 | None:intergenic | 45.0% |
| TCTCTTTCGAATGGGTGGAT+CGG | - | tig0025556:26753-26772 | Msa1423460:intron | 45.0% | |
| CGATGGATGACTTGAGAGTA+GGG | + | tig0025556:26782-26801 | None:intergenic | 45.0% | |
| CCTACTCTCAAGTCATCCAT+CGG | - | tig0025556:26780-26799 | Msa1423460:intron | 45.0% | |
| CGTACACACATAACATCGCT+CGG | - | tig0025556:26961-26980 | Msa1423460:CDS | 45.0% | |
| TCCGAAATTGGGAGGACTAA+TGG | + | tig0025556:26988-27007 | None:intergenic | 45.0% | |
| ! | CAATTTTGCATGCATACGGG+CGG | - | tig0025556:27099-27118 | Msa1423460:CDS | 45.0% |
| ! | TGGCAAATGGCTTTTGGATC+TGG | - | tig0025556:27288-27307 | Msa1423460:CDS | 45.0% |
| !!! | ATATTTTTATTTTATCTAAA+AGG | - | tig0025556:25146-25165 | Msa1423460:intron | 5.0% |
| !!! | TTTTTTATTTGTATAAATTT+GGG | + | tig0025556:25567-25586 | None:intergenic | 5.0% |
| !!! | TTTTTTTATTTGTATAAATT+TGG | + | tig0025556:25568-25587 | None:intergenic | 5.0% |
| !! | CAGTGCTGGTGTTATTGCAG+TGG | - | tig0025556:24667-24686 | Msa1423460:CDS | 50.0% |
| ACCCTCAAGCTCCAACCTAT+AGG | - | tig0025556:25364-25383 | Msa1423460:intron | 50.0% | |
| ! | GCCTATAGGTTGGAGCTTGA+GGG | + | tig0025556:25368-25387 | None:intergenic | 50.0% |
| TCAGATACGGGCCTATAGGT+TGG | + | tig0025556:25378-25397 | None:intergenic | 50.0% | |
| CTACTCAGATACGGGCCTAT+AGG | + | tig0025556:25382-25401 | None:intergenic | 50.0% | |
| CTATAGGCCCGTATCTGAGT+AGG | - | tig0025556:25380-25399 | Msa1423460:intron | 50.0% | |
| CCCGTATCTGAGTAGGACTA+AGG | - | tig0025556:25387-25406 | Msa1423460:intron | 50.0% | |
| CCAACTGAGCTAAACTCACG+AGG | + | tig0025556:25805-25824 | None:intergenic | 50.0% | |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | - | tig0025556:25802-25821 | Msa1423460:intron | 50.0% |
| CCGATGGATGACTTGAGAGT+AGG | + | tig0025556:26783-26802 | None:intergenic | 50.0% | |
| AGTGGTATGGGATGCAGTGC+TGG | - | tig0025556:24653-24672 | Msa1423460:CDS | 55.0% | |
| ! | GGCCTATAGGTTGGAGCTTG+AGG | + | tig0025556:25369-25388 | None:intergenic | 55.0% |
| AAGATCCGGGGTTCAAACCC+CGG | - | tig0025556:25853-25872 | Msa1423460:intron | 55.0% | |
| CATTCGTTGCGCACTCACGT+AGG | - | tig0025556:26832-26851 | Msa1423460:intron | 55.0% | |
| GCGGTAGAGCGGTTCTTGAT+CGG | - | tig0025556:27118-27137 | Msa1423460:CDS | 55.0% | |
| TTTGAGCGGCTACGGTCCGA+TGG | + | tig0025556:26799-26818 | None:intergenic | 60.0% | |
| CATGCATACGGGCGGTAGAG+CGG | - | tig0025556:27107-27126 | Msa1423460:CDS | 60.0% | |
| AGTGGCCGGGGTTTGAACCC+CGG | + | tig0025556:25861-25880 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025556 | gene | 24006 | 27652 | 24006 | ID=Msa1423460;Name=Msa1423460 |
| tig0025556 | mRNA | 24006 | 27652 | 24006 | ID=Msa1423460-mRNA-1;Parent=Msa1423460;Name=Msa1423460-mRNA-1;_AED=0.01;_eAED=0.01;_QI=53|1|1|1|1|1|2|209|479 |
| tig0025556 | exon | 24006 | 25000 | 24006 | ID=Msa1423460-mRNA-1:exon:3247;Parent=Msa1423460-mRNA-1 |
| tig0025556 | exon | 26946 | 27652 | 26946 | ID=Msa1423460-mRNA-1:exon:3246;Parent=Msa1423460-mRNA-1 |
| tig0025556 | five_prime_UTR | 27600 | 27652 | 27600 | ID=Msa1423460-mRNA-1:five_prime_utr;Parent=Msa1423460-mRNA-1 |
| tig0025556 | CDS | 26946 | 27599 | 26946 | ID=Msa1423460-mRNA-1:cds;Parent=Msa1423460-mRNA-1 |
| tig0025556 | CDS | 24215 | 25000 | 24215 | ID=Msa1423460-mRNA-1:cds;Parent=Msa1423460-mRNA-1 |
| tig0025556 | three_prime_UTR | 24006 | 24214 | 24006 | ID=Msa1423460-mRNA-1:three_prime_utr;Parent=Msa1423460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
