AlfalfaGEDB | Msa1040580

M. sativa cultivar zhongmu-4 / Msa1040580

KEGG: K01881
GO: GO:0003674 GO:0003824 GO:0004812 GO:0004827 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006433 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016874 GO:0016875 GO:0017101 GO:0019538 GO:0019752 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0055044 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00587.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040580	AES82285.2	93.573	529	6	3	1	501	88	616	0.0	1010

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040580	sp\|Q9M1R2\|SYPC_ARATH	80.924	498	69	3	29	501	34	530	0.0	833

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040580	G7KUM3	93.573	529	6	3	1	501	88	616	0.0	1010

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0057610	Msa1040580	0.829807	4.186314e-55	-8.615850e-47
Msa0103240	Msa1040580	0.802261	6.099912e-49	-8.615850e-47
Msa0113240	Msa1040580	0.802530	5.371067e-49	-8.615850e-47
Msa0147980	Msa1040580	0.807529	4.835923e-50	-8.615850e-47
Msa0167480	Msa1040580	0.801789	7.628014e-49	-8.615850e-47
Msa0245060	Msa1040580	0.805793	1.124229e-49	-8.615850e-47
Msa0245580	Msa1040580	0.803753	2.999522e-49	-8.615850e-47
Msa0262480	Msa1040580	0.800541	1.373172e-48	-8.615850e-47
Msa0423750	Msa1040580	0.807893	4.047162e-50	-8.615850e-47
Msa0434570	Msa1040580	0.807532	4.827003e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040580	MtrunA17_Chr7g0270811	93.573	529	6	3	1	501	1	529	0.0	1005
Msa1040580	MtrunA17_Chr3g0143341	66.219	521	116	2	41	501	3	523	0.0	712
Msa1040580	MtrunA17_Chr3g0143331	55.188	453	82	7	63	449	7	404	7.03e-161	462
Msa1040580	MtrunA17_Chr3g0096421	72.026	311	71	1	207	501	9	319	7.33e-161	459
Msa1040580	MtrunA17_Chr3g0133261	38.716	483	258	8	49	501	68	542	5.48e-120	362
Msa1040580	MtrunA17_Chr3g0096431	68.707	147	46	0	36	182	4	150	5.61e-71	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1040580	AT3G62120.3	80.924	498	69	3	29	501	21	517	0.0	833
Msa1040580	AT3G62120.2	80.924	498	69	3	29	501	34	530	0.0	833
Msa1040580	AT3G62120.1	80.924	498	69	3	29	501	34	530	0.0	833
Msa1040580	AT5G52520.1	38.114	509	275	7	24	501	44	543	6.63e-123	370
Msa1040580	AT5G10880.1	58.559	222	70	3	302	501	88	309	4.38e-80	252

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Find 134 sgRNAs with CRISPR-Local

Find 392 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGATCTTAGCTCCT+TGG	0.467478	7_1:-77967376	Msa1040580:CDS
AAAGGAGAAGGACCATATCG+AGG	0.654659	7_1:-77970762	Msa1040580:CDS
AAAGGAGGAAGCAGATACAG+AGG	0.626885	7_1:-77969719	Msa1040580:intron
AACACTGGTCGTGGCATACA+AGG	0.530898	7_1:-77968186	Msa1040580:CDS
AAGCTACTAGATCTTGATTG+TGG	0.622664	7_1:-77966110	Msa1040580:exon
AAGGAAGTTAAGAAAGAAAC+TGG	0.304904	7_1:-77971656	Msa1040580:CDS
AAGGAGAAGGACCATATCGA+GGG	0.621782	7_1:-77970761	Msa1040580:CDS
AATAAGAAGGCTGAAAACTT+CGG	0.562437	7_1:-77971620	Msa1040580:CDS
AATGGAGCGTGCAAGAGCGA+TGG	0.607251	7_1:+77971995	None:intergenic
AATGGTCTGGCAGAACTCAT+GGG	0.584270	7_1:-77968085	Msa1040580:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTTCTTCAATTCCTAAT+CGG	-	chr7_1:77966038-77966057	Msa1040580:three_prime_UTR	30.0%
AAGGAAGTTAAGAAAGAAAC+TGG	-	chr7_1:77966291-77966310	Msa1040580:intron	30.0%
AATAAGAAGGCTGAAAACTT+CGG	-	chr7_1:77966327-77966346	Msa1040580:intron	30.0%
TGTTGATCTATACTAAGGTT+CGG	-	chr7_1:77966655-77966674	Msa1040580:intron	30.0%
CAGTATTAGAAACAAACAGA+GGG	+	chr7_1:77967158-77967177	None:intergenic	30.0%
ACAGTATTAGAAACAAACAG+AGG	+	chr7_1:77967159-77967178	None:intergenic	30.0%
ATGTGATTGTTCAACAAGTT+TGG	-	chr7_1:77967237-77967256	Msa1040580:intron	30.0%
TAAATAGTCACAGCAAAATC+AGG	+	chr7_1:77967402-77967421	None:intergenic	30.0%
TAAATCAGATTCTCCAGATT+TGG	+	chr7_1:77967499-77967518	None:intergenic	30.0%
TACATAACAGTTTCACTAGT+TGG	+	chr7_1:77967543-77967562	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	77965882	77972087	77965882	ID=Msa1040580;Name=Msa1040580
chr7_1	mRNA	77965882	77972087	77965882	ID=Msa1040580-mRNA-1;Parent=Msa1040580;Name=Msa1040580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=147\|0.84\|0.85\|1\|0.69\|0.57\|14\|209\|501
chr7_1	exon	77965882	77965904	77965882	ID=Msa1040580-mRNA-1:exon:20720;Parent=Msa1040580-mRNA-1
chr7_1	exon	77965937	77966187	77965937	ID=Msa1040580-mRNA-1:exon:20719;Parent=Msa1040580-mRNA-1
chr7_1	exon	77966686	77966779	77966686	ID=Msa1040580-mRNA-1:exon:20718;Parent=Msa1040580-mRNA-1
chr7_1	exon	77967364	77967582	77967364	ID=Msa1040580-mRNA-1:exon:20717;Parent=Msa1040580-mRNA-1
chr7_1	exon	77967745	77967981	77967745	ID=Msa1040580-mRNA-1:exon:20716;Parent=Msa1040580-mRNA-1
chr7_1	exon	77968068	77968220	77968068	ID=Msa1040580-mRNA-1:exon:20715;Parent=Msa1040580-mRNA-1
chr7_1	exon	77968314	77968436	77968314	ID=Msa1040580-mRNA-1:exon:20714;Parent=Msa1040580-mRNA-1
chr7_1	exon	77969720	77969786	77969720	ID=Msa1040580-mRNA-1:exon:20713;Parent=Msa1040580-mRNA-1
chr7_1	exon	77970326	77970486	77970326	ID=Msa1040580-mRNA-1:exon:20712;Parent=Msa1040580-mRNA-1
chr7_1	exon	77970748	77970864	77970748	ID=Msa1040580-mRNA-1:exon:20711;Parent=Msa1040580-mRNA-1
chr7_1	exon	77971390	77971482	77971390	ID=Msa1040580-mRNA-1:exon:20710;Parent=Msa1040580-mRNA-1
chr7_1	exon	77971604	77971692	77971604	ID=Msa1040580-mRNA-1:exon:20709;Parent=Msa1040580-mRNA-1
chr7_1	exon	77971777	77971889	77971777	ID=Msa1040580-mRNA-1:exon:20708;Parent=Msa1040580-mRNA-1
chr7_1	exon	77971966	77972087	77971966	ID=Msa1040580-mRNA-1:exon:20707;Parent=Msa1040580-mRNA-1
chr7_1	five_prime_UTR	77971966	77972087	77971966	ID=Msa1040580-mRNA-1:five_prime_utr;Parent=Msa1040580-mRNA-1
chr7_1	five_prime_UTR	77971865	77971889	77971865	ID=Msa1040580-mRNA-1:five_prime_utr;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77971777	77971864	77971777	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77971604	77971692	77971604	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77971390	77971482	77971390	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77970748	77970864	77970748	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77970326	77970486	77970326	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77969720	77969786	77969720	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77968314	77968436	77968314	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77968068	77968220	77968068	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77967745	77967981	77967745	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77967364	77967582	77967364	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77966686	77966779	77966686	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	CDS	77966123	77966187	77966123	ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1
chr7_1	three_prime_UTR	77965937	77966122	77965937	ID=Msa1040580-mRNA-1:three_prime_utr;Parent=Msa1040580-mRNA-1
chr7_1	three_prime_UTR	77965882	77965904	77965882	ID=Msa1040580-mRNA-1:three_prime_utr;Parent=Msa1040580-mRNA-1

Gene Sequence

>Msa1040580

ATGGCGGGGACCGATGACCACAAAACACAACAACAATCCGCTGCAAAACCCCAAAAACAACCAAAACAACCAAAACCACAACAGTCAGGTGGTGGAAAGAAGAAGGAAGTTAAGAAAGAAACTGGTTTAGGTTTGACCAATAAGAAGGCTGAAAACTTCGGAGAATGGTATTCCGAGGTTGTTGTGAATGGGGAAATGATTGAGTACTATGATATTTCTGGTTGCTATATTCTCAGACCTTGGTCAATGGCTATTTGGGAGATTATGCAAGCGTTTTTTGATCCAGAAATAAAGAAAATGAAGATCAAGAACTGCTACTTCCCTCTGTTTGTTTCTAATACTGTTCTGGAAAAGGAGAAGGACCATATCGAGGGTTTTGCTCCAGAGGTTGCTTGGGTGACCAAATCTGGAGAATCTGATTTAGAGATTCCTATTGCTATTCGTCCAACTAGTGAAACTGTTATGTATCCTTACTACTCTAAGTGGATAAGGGGACATCGTGACTTACCTTTGAAGCTTAATCAGTGGTGCAATGTTGTTAGATGGGAGAGTCGTGAGTTTCTTTGGCAAGAAGGACACACCGCTTTTGCAACAAAGGAGGAAGCAGATACAGAGGTTCTCGAGATTTTGGAATTATATCGGCGTATCTATGAAGAGTATTTGGCAGTTCCTGTCGTAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTGGACTTTACACTACCAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGCATACAAGGTGCAACTTCTCATTGTTTGGGACAAAATTTTGCTAAAATGTTCGAGATAAACTATGAAAATGAGAAGGGAGAGAAAGCAATGGTCTGGCAGAACTCATGGGCCTATAGTACTCGAACTATTGGGGTGATGGTGATGGTTCATGGTGATGACAAGGGATTGGTGCTGCCACCTAAAGTAGCTTCAGTTCAAGTCATTGTGATTCCTGTGCCCTACAAAGATGCTGATACTCAAGGAATCTTTGATGCCTGTACCGCAACTGTGAATATGTTGTTGGAAGCAGGAATTCGTGCTGAGTCAGATGCCAGAGACAACTATTCTCCTGGATGGAAGTATTCTCAGTGGGAAATGAAAGGTGTCCGTGCTGTTCGTCGTGATAGCGGAGCAAAGATCGACATTGGTAATGATGATTTGGTTGCGGAAATAAAGAAGTTGCTCGATAATATTCAACAGAATTTGTTCGATGTTGCAAAACAAAAACGAGATGCATGTATTCAGATCATACATACATGGGATGAGTTTGTAGGAGCTTTGAATGAAAAAAAGATGATCTTAGCTCCTTGGTGTGACGAGGAGGAGGTGGAAAAAGATGTCAAAGCAAAGACAAAGGGTGAGACAGGAGCTGCAAAGACACTCTGTAGTCCCTTTGATCAGCCTGAACTCCCCGAAGGCACCGTGTGCTTTGCGTCAGGCAAGCCTGCAAAGAAGTGGTCATACTGGGGCAAAAGCTACTAG

Protein sequence

>Msa1040580

MAGTDDHKTQQQSAAKPQKQPKQPKPQQSGGGKKKEVKKETGLGLTNKKAENFGEWYSEVVVNGEMIEYYDISGCYILRPWSMAIWEIMQAFFDPEIKKMKIKNCYFPLFVSNTVLEKEKDHIEGFAPEVAWVTKSGESDLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWESREFLWQEGHTAFATKEEADTEVLEILELYRRIYEEYLAVPVVKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINYENEKGEKAMVWQNSWAYSTRTIGVMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIFDACTATVNMLLEAGIRAESDARDNYSPGWKYSQWEMKGVRAVRRDSGAKIDIGNDDLVAEIKKLLDNIQQNLFDVAKQKRDACIQIIHTWDEFVGALNEKKMILAPWCDEEEVEKDVKAKTKGETGAAKTLCSPFDQPELPEGTVCFASGKPAKKWSYWGKSY*