Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040580 | AES82285.2 | 93.573 | 529 | 6 | 3 | 1 | 501 | 88 | 616 | 0.0 | 1010 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040580 | sp|Q9M1R2|SYPC_ARATH | 80.924 | 498 | 69 | 3 | 29 | 501 | 34 | 530 | 0.0 | 833 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040580 | G7KUM3 | 93.573 | 529 | 6 | 3 | 1 | 501 | 88 | 616 | 0.0 | 1010 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0057610 | Msa1040580 | 0.829807 | 4.186314e-55 | -8.615850e-47 |
| Msa0103240 | Msa1040580 | 0.802261 | 6.099912e-49 | -8.615850e-47 |
| Msa0113240 | Msa1040580 | 0.802530 | 5.371067e-49 | -8.615850e-47 |
| Msa0628420 | Msa1040580 | 0.809267 | 2.059356e-50 | -8.615850e-47 |
| Msa0633570 | Msa1040580 | 0.824225 | 9.057307e-54 | -8.615850e-47 |
| Msa0654870 | Msa1040580 | 0.811988 | 5.314104e-51 | -8.615850e-47 |
| Msa0659990 | Msa1040580 | 0.805544 | 1.268501e-49 | -8.615850e-47 |
| Msa0683780 | Msa1040580 | 0.825935 | 3.572413e-54 | -8.615850e-47 |
| Msa0705000 | Msa1040580 | 0.817258 | 3.620344e-52 | -8.615850e-47 |
| Msa0705040 | Msa1040580 | 0.809364 | 1.963056e-50 | -8.615850e-47 |
| Msa0745200 | Msa1040580 | 0.804241 | 2.373850e-49 | -8.615850e-47 |
| Msa0785130 | Msa1040580 | 0.813425 | 2.576067e-51 | -8.615850e-47 |
| Msa0819540 | Msa1040580 | 0.841952 | 3.477401e-58 | -8.615850e-47 |
| Msa0147980 | Msa1040580 | 0.807529 | 4.835923e-50 | -8.615850e-47 |
| Msa0167480 | Msa1040580 | 0.801789 | 7.628014e-49 | -8.615850e-47 |
| Msa0423750 | Msa1040580 | 0.807893 | 4.047162e-50 | -8.615850e-47 |
| Msa0434570 | Msa1040580 | 0.807532 | 4.827003e-50 | -8.615850e-47 |
| Msa0434770 | Msa1040580 | 0.807369 | 5.228885e-50 | -8.615850e-47 |
| Msa0478580 | Msa1040580 | 0.803798 | 2.934843e-49 | -8.615850e-47 |
| Msa1040580 | Msa1070390 | 0.811216 | 7.821523e-51 | -8.615850e-47 |
| Msa1040580 | Msa1166870 | 0.808779 | 2.619007e-50 | -8.615850e-47 |
| Msa1040580 | Msa1206650 | 0.801824 | 7.501900e-49 | -8.615850e-47 |
| Msa1040580 | Msa1208020 | 0.811055 | 8.475904e-51 | -8.615850e-47 |
| Msa1040580 | Msa1225660 | 0.807688 | 4.472166e-50 | -8.615850e-47 |
| Msa1040580 | Msa1230580 | 0.800991 | 1.111608e-48 | -8.615850e-47 |
| Msa1040580 | Msa1256770 | 0.821143 | 4.721202e-53 | -8.615850e-47 |
| Msa1040580 | Msa1329540 | 0.805681 | 1.187081e-49 | -8.615850e-47 |
| Msa1040580 | Msa1331250 | 0.809037 | 2.306640e-50 | -8.615850e-47 |
| Msa1040580 | Msa1411950 | 0.811141 | 8.122287e-51 | -8.615850e-47 |
| Msa1040580 | Msa1413180 | 0.814047 | 1.879112e-51 | -8.615850e-47 |
| Msa1040580 | Msa1429500 | 0.812649 | 3.811357e-51 | -8.615850e-47 |
| Msa1040580 | Msa1438050 | 0.801807 | 7.564657e-49 | -8.615850e-47 |
| Msa1040580 | Msa1442850 | 0.800317 | 1.525697e-48 | -8.615850e-47 |
| Msa0245060 | Msa1040580 | 0.805793 | 1.124229e-49 | -8.615850e-47 |
| Msa0245580 | Msa1040580 | 0.803753 | 2.999522e-49 | -8.615850e-47 |
| Msa0262480 | Msa1040580 | 0.800541 | 1.373172e-48 | -8.615850e-47 |
| Msa0527150 | Msa1040580 | 0.815391 | 9.470552e-52 | -8.615850e-47 |
| Msa0534750 | Msa1040580 | 0.833709 | 4.564060e-56 | -8.615850e-47 |
| Msa0561430 | Msa1040580 | 0.817849 | 2.663371e-52 | -8.615850e-47 |
| Msa0593700 | Msa1040580 | 0.828602 | 8.207541e-55 | -8.615850e-47 |
| Msa0943170 | Msa1040580 | 0.813622 | 2.332105e-51 | -8.615850e-47 |
| Msa0963020 | Msa1040580 | 0.808801 | 2.590111e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040580 | MtrunA17_Chr7g0270811 | 93.573 | 529 | 6 | 3 | 1 | 501 | 1 | 529 | 0.0 | 1005 |
| Msa1040580 | MtrunA17_Chr3g0143341 | 66.219 | 521 | 116 | 2 | 41 | 501 | 3 | 523 | 0.0 | 712 |
| Msa1040580 | MtrunA17_Chr3g0143331 | 55.188 | 453 | 82 | 7 | 63 | 449 | 7 | 404 | 7.03e-161 | 462 |
| Msa1040580 | MtrunA17_Chr3g0096421 | 72.026 | 311 | 71 | 1 | 207 | 501 | 9 | 319 | 7.33e-161 | 459 |
| Msa1040580 | MtrunA17_Chr3g0133261 | 38.716 | 483 | 258 | 8 | 49 | 501 | 68 | 542 | 5.48e-120 | 362 |
| Msa1040580 | MtrunA17_Chr3g0096431 | 68.707 | 147 | 46 | 0 | 36 | 182 | 4 | 150 | 5.61e-71 | 223 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1040580 | AT3G62120.3 | 80.924 | 498 | 69 | 3 | 29 | 501 | 21 | 517 | 0.0 | 833 |
| Msa1040580 | AT3G62120.2 | 80.924 | 498 | 69 | 3 | 29 | 501 | 34 | 530 | 0.0 | 833 |
| Msa1040580 | AT3G62120.1 | 80.924 | 498 | 69 | 3 | 29 | 501 | 34 | 530 | 0.0 | 833 |
| Msa1040580 | AT5G52520.1 | 38.114 | 509 | 275 | 7 | 24 | 501 | 44 | 543 | 6.63e-123 | 370 |
| Msa1040580 | AT5G10880.1 | 58.559 | 222 | 70 | 3 | 302 | 501 | 88 | 309 | 4.38e-80 | 252 |
Find 134 sgRNAs with CRISPR-Local
Find 392 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTTGGTCAATGGCTATT+TGG | 0.152091 | 7_1:-77971402 | Msa1040580:CDS |
| GTTTCAGGTTCTCGAGATTT+TGG | 0.186097 | 7_1:-77968421 | Msa1040580:intron |
| ATTGAGTACTATGATATTTC+TGG | 0.186757 | 7_1:-77971439 | Msa1040580:CDS |
| GAAGCTAGTTCACCATTTAA+TGG | 0.214540 | 7_1:-77966079 | Msa1040580:three_prime_UTR |
| CAGTATGACCACTTCTTTGC+AGG | 0.254878 | 7_1:+77966139 | None:intergenic |
| GTTTGTTTCTAATACTGTTC+TGG | 0.275959 | 7_1:-77970786 | Msa1040580:CDS |
| TAACCTGACTGTTGTGGTTT+TGG | 0.279993 | 7_1:+77971773 | None:intergenic |
| AGGTGCAACTTCTCATTGTT+TGG | 0.296531 | 7_1:-77968166 | Msa1040580:CDS |
| AAGGAAGTTAAGAAAGAAAC+TGG | 0.304904 | 7_1:-77971656 | Msa1040580:CDS |
| TAAATCAGATTCTCCAGATT+TGG | 0.310695 | 7_1:+77970451 | None:intergenic |
| TGCCCATTACCCAGGTTGCT+TGG | 0.318400 | 7_1:-77970478 | Msa1040580:intron |
| GTAGGAGTCGTGAGTTTCTT+TGG | 0.319999 | 7_1:-77969768 | Msa1040580:intron |
| ACCTTGGTCAATGGCTATTT+GGG | 0.328192 | 7_1:-77971401 | Msa1040580:CDS |
| CTGCAAAGAAGTGGTCATAC+TGG | 0.344091 | 7_1:-77966138 | Msa1040580:CDS |
| CGACATTGGTAATGATGATT+TGG | 0.345632 | 7_1:-77967525 | Msa1040580:CDS |
| GTTAAGAAAGAAACTGGTTT+AGG | 0.347730 | 7_1:-77971650 | Msa1040580:CDS |
| TCAGTCAAGGCACCATTAAA+TGG | 0.350221 | 7_1:+77966067 | None:intergenic |
| ACTTGAACTGAAGCTACTTT+AGG | 0.353590 | 7_1:+77967908 | None:intergenic |
| TACATAACAGTTTCACTAGT+TGG | 0.356914 | 7_1:+77970407 | None:intergenic |
| GCGTATCTATGAAGAGTATT+TGG | 0.357332 | 7_1:-77968388 | Msa1040580:CDS |
| GTTGCTTGGGTGACCAAATC+TGG | 0.358966 | 7_1:-77970464 | Msa1040580:CDS |
| GCCCATTACCCAGGTTGCTT+GGG | 0.361494 | 7_1:-77970477 | Msa1040580:intron |
| CTTATACCTTCGGGGAGTTC+AGG | 0.364150 | 7_1:+77966679 | None:intergenic |
| GGGGTGATGGTGATGGTTCA+TGG | 0.366349 | 7_1:-77967956 | Msa1040580:CDS |
| CTTACTACTCTAAGTGGATA+AGG | 0.369921 | 7_1:-77970382 | Msa1040580:CDS |
| TTGAGTATCAGCATCTTTGT+AGG | 0.389350 | 7_1:+77967868 | None:intergenic |
| TTCTAATACTGTTCTGGAAA+AGG | 0.393006 | 7_1:-77970780 | Msa1040580:CDS |
| GGTGCAACTTCTCATTGTTT+GGG | 0.396799 | 7_1:-77968165 | Msa1040580:CDS |
| GCAAAGACAAAGGGTGAGAC+AGG | 0.405111 | 7_1:-77966736 | Msa1040580:CDS |
| GGAAAGAAGGCGAGAGAGAA+TGG | 0.410760 | 7_1:+77971977 | None:intergenic |
| TGTATGCCACGACCAGTGTT+TGG | 0.417316 | 7_1:+77968189 | None:intergenic |
| TTACTACTCTAAGTGGATAA+GGG | 0.421374 | 7_1:-77970381 | Msa1040580:CDS |
| GCTTACAGTTCGAGTACTAT+AGG | 0.427959 | 7_1:+77968062 | None:intergenic |
| TGTAGGTGGTGGAAAGAAGA+AGG | 0.433758 | 7_1:-77971675 | Msa1040580:intron |
| TGGTGCCTTGACTGAATTTG+TGG | 0.435348 | 7_1:-77966059 | Msa1040580:three_prime_UTR |
| CGTGAGTTTCTTTGGCAAGA+AGG | 0.437042 | 7_1:-77969760 | Msa1040580:CDS |
| AGTGGTGCAATGTTGTTAGA+TGG | 0.437519 | 7_1:-77970328 | Msa1040580:CDS |
| ACCTTGTTGTGTTGGAAAGA+AGG | 0.446489 | 7_1:+77971964 | None:intergenic |
| CTAGTTGGACGAATAGCAAT+AGG | 0.448569 | 7_1:+77970422 | None:intergenic |
| AGTGAGCTTGAGAAGTTTGC+TGG | 0.448820 | 7_1:-77968339 | Msa1040580:CDS |
| GTTGCTATATTCTCAGACCT+TGG | 0.452794 | 7_1:-77971417 | Msa1040580:CDS |
| TCGTCATCCTTCACAATGGC+GGG | 0.453103 | 7_1:-77971857 | Msa1040580:exon |
| TCTGTAATCTCTAGCTAGCT+AGG | 0.454726 | 7_1:+77972051 | None:intergenic |
| TTGGCAGTTCCTGTCGTAAA+GGG | 0.457079 | 7_1:-77968369 | Msa1040580:CDS |
| CAATGGTCTGGCAGAACTCA+TGG | 0.460207 | 7_1:-77968086 | Msa1040580:CDS |
| CTGGAGCAAAACCCTCGATA+TGG | 0.461189 | 7_1:+77970750 | None:intergenic |
| CGCAACTGTGAATATGTTGT+TGG | 0.465083 | 7_1:-77967825 | Msa1040580:CDS |
| CATACATGGGATGAGTTTGT+AGG | 0.465123 | 7_1:-77967413 | Msa1040580:CDS |
| AAAAGATGATCTTAGCTCCT+TGG | 0.467478 | 7_1:-77967376 | Msa1040580:CDS |
| GCCAGAGACAACTATTCTCC+TGG | 0.468582 | 7_1:-77967776 | Msa1040580:CDS |
| CTTATCCACTTAGAGTAGTA+AGG | 0.470822 | 7_1:+77970383 | None:intergenic |
| TGCAAAGAAGTGGTCATACT+GGG | 0.472500 | 7_1:-77966137 | Msa1040580:CDS |
| TTTAGGTTTGACCAATAAGA+AGG | 0.475575 | 7_1:-77971633 | Msa1040580:CDS |
| GGCACCGTGTGCTTTGCGTC+AGG | 0.478750 | 7_1:-77966166 | Msa1040580:CDS |
| AGGGAGAGAAAGCAATGGTC+TGG | 0.482327 | 7_1:-77968098 | Msa1040580:CDS |
| TTCCTCCTTTGTTGCAAAAG+CGG | 0.484735 | 7_1:+77969732 | None:intergenic |
| CATATTCACAGTTGCGGTAC+AGG | 0.488743 | 7_1:+77967832 | None:intergenic |
| CACCACTGATTAAGCTTCAA+AGG | 0.494982 | 7_1:+77970344 | None:intergenic |
| AGGCTGAAAACTTCGGAGAA+TGG | 0.496139 | 7_1:-77971613 | Msa1040580:CDS |
| CTCGTCATCCTTCACAATGG+CGG | 0.504304 | 7_1:-77971858 | Msa1040580:exon |
| TCCAGGAGAATAGTTGTCTC+TGG | 0.507302 | 7_1:+77967775 | None:intergenic |
| CTGTAATCTCTAGCTAGCTA+GGG | 0.507578 | 7_1:+77972052 | None:intergenic |
| GTGAATATGTTGTTGGAAGC+AGG | 0.507911 | 7_1:-77967818 | Msa1040580:CDS |
| GATGTCAAAGCAAAGACAAA+GGG | 0.512905 | 7_1:-77966745 | Msa1040580:CDS |
| TATTCTCAGACCTTGGTCAA+TGG | 0.514429 | 7_1:-77971410 | Msa1040580:CDS |
| ATCGGTCCCCGCCATTGTGA+AGG | 0.522242 | 7_1:+77971850 | None:intergenic |
| TTTGGCAGTTCCTGTCGTAA+AGG | 0.524309 | 7_1:-77968370 | Msa1040580:CDS |
| CAACCAAAACCACAACAGTC+AGG | 0.526539 | 7_1:-77971776 | Msa1040580:intron |
| AGAGAGAGAATCTCCTCTTA+CGG | 0.530261 | 7_1:-77972024 | Msa1040580:five_prime_UTR |
| CACTGAGAATACTTCCATCC+AGG | 0.530398 | 7_1:+77967758 | None:intergenic |
| AACACTGGTCGTGGCATACA+AGG | 0.530898 | 7_1:-77968186 | Msa1040580:CDS |
| GGGAGTTCAGGCTGATCAAA+GGG | 0.531805 | 7_1:+77966691 | None:intergenic |
| GCGTGCAAGAGCGATGGTGC+CGG | 0.533896 | 7_1:+77972001 | None:intergenic |
| GATAAACTATGAAAATGAGA+AGG | 0.535170 | 7_1:-77968118 | Msa1040580:CDS |
| TTTATTCCAAACACTGGTCG+TGG | 0.535309 | 7_1:-77968195 | Msa1040580:CDS |
| TACTGTTCTGGAAAAGGAGA+AGG | 0.537973 | 7_1:-77970774 | Msa1040580:CDS |
| TGAGTATCAGCATCTTTGTA+GGG | 0.539042 | 7_1:+77967869 | None:intergenic |
| TGGTAATGATGATTTGGTTG+CGG | 0.557487 | 7_1:-77967519 | Msa1040580:CDS |
| TGTATCCTTACTACTCTAAG+TGG | 0.558724 | 7_1:-77970388 | Msa1040580:CDS |
| TTTACAGGTTGTTGTGAATG+GGG | 0.561335 | 7_1:-77971467 | Msa1040580:intron |
| TCAGCATCTTTGTAGGGCAC+AGG | 0.562164 | 7_1:+77967875 | None:intergenic |
| AATAAGAAGGCTGAAAACTT+CGG | 0.562437 | 7_1:-77971620 | Msa1040580:CDS |
| GTATTCAGATCATACATACA+TGG | 0.562724 | 7_1:-77967427 | Msa1040580:CDS |
| ACGGTGTTACCTTGTTGTGT+TGG | 0.565907 | 7_1:+77971956 | None:intergenic |
| CTTGCCTGACGCAAAGCACA+CGG | 0.565951 | 7_1:+77966162 | None:intergenic |
| GGGGAGTTCAGGCTGATCAA+AGG | 0.569175 | 7_1:+77966690 | None:intergenic |
| AGAGAATCTCCTCTTACGGC+CGG | 0.571878 | 7_1:-77972020 | Msa1040580:five_prime_UTR |
| CAGGCATTTATTCCAAACAC+TGG | 0.574214 | 7_1:-77968201 | Msa1040580:CDS |
| TGAACTGAAGCTACTTTAGG+TGG | 0.574866 | 7_1:+77967911 | None:intergenic |
| ACAGATTGGGGTGATGGTGA+TGG | 0.576038 | 7_1:-77967963 | Msa1040580:intron |
| GCCTTCTTTCCAACACAACA+AGG | 0.579588 | 7_1:-77971965 | Msa1040580:intron |
| CTTAGCTCCTTGGTGTGACG+AGG | 0.580104 | 7_1:-77967366 | Msa1040580:CDS |
| GAGACAACTATTCTCCTGGA+TGG | 0.582790 | 7_1:-77967772 | Msa1040580:CDS |
| TACCTTTGAAGCTTAATCAG+TGG | 0.584262 | 7_1:-77970346 | Msa1040580:CDS |
| AATGGTCTGGCAGAACTCAT+GGG | 0.584270 | 7_1:-77968085 | Msa1040580:CDS |
| TCATGGTGATGACAAGGGAT+TGG | 0.590460 | 7_1:-77967939 | Msa1040580:CDS |
| TATTCTCAGTGGGAAATGAA+AGG | 0.590826 | 7_1:-77967746 | Msa1040580:CDS |
| AGCTCCTTGGTGTGACGAGG+AGG | 0.591730 | 7_1:-77967363 | Msa1040580:intron |
| CGTGCTGTTCGTCGTGATAG+CGG | 0.597820 | 7_1:-77967557 | Msa1040580:CDS |
| TACTACTCTAAGTGGATAAG+GGG | 0.599458 | 7_1:-77970380 | Msa1040580:CDS |
| ATAAACTATGAAAATGAGAA+GGG | 0.599751 | 7_1:-77968117 | Msa1040580:CDS |
| CGTCATCCTTCACAATGGCG+GGG | 0.607064 | 7_1:-77971856 | Msa1040580:exon |
| AATGGAGCGTGCAAGAGCGA+TGG | 0.607251 | 7_1:+77971995 | None:intergenic |
| GTGGTGCAATGTTGTTAGAT+GGG | 0.608044 | 7_1:-77970327 | Msa1040580:CDS |
| AGATGTCAAAGCAAAGACAA+AGG | 0.609358 | 7_1:-77966746 | Msa1040580:CDS |
| GAGCTTGAGAAGTTTGCTGG+TGG | 0.612213 | 7_1:-77968336 | Msa1040580:CDS |
| AGCGGAGCAAAGATCGACAT+TGG | 0.614104 | 7_1:-77967539 | Msa1040580:CDS |
| TGGATGGAAGTATTCTCAGT+GGG | 0.614599 | 7_1:-77967756 | Msa1040580:CDS |
| CAACAACATATTCACAGTTG+CGG | 0.617944 | 7_1:+77967826 | None:intergenic |
| AAGGAGAAGGACCATATCGA+GGG | 0.621782 | 7_1:-77970761 | Msa1040580:CDS |
| AAGCTACTAGATCTTGATTG+TGG | 0.622664 | 7_1:-77966110 | Msa1040580:exon |
| CAGGCAAGCCTGCAAAGAAG+TGG | 0.622850 | 7_1:-77966147 | Msa1040580:CDS |
| TACAAAGATGCTGATACTCA+AGG | 0.623688 | 7_1:-77967866 | Msa1040580:CDS |
| ACTTTACACTACCAGTGTTG+AGG | 0.626381 | 7_1:-77968313 | Msa1040580:intron |
| AAAGGAGGAAGCAGATACAG+AGG | 0.626885 | 7_1:-77969719 | Msa1040580:intron |
| TATTCAGATCATACATACAT+GGG | 0.628286 | 7_1:-77967426 | Msa1040580:CDS |
| GTGAAATAACCTGACTGTTG+TGG | 0.629761 | 7_1:+77971767 | None:intergenic |
| CAGTATTAGAAACAAACAGA+GGG | 0.633054 | 7_1:+77970792 | None:intergenic |
| TCAGACACACACCTCAACAC+TGG | 0.635226 | 7_1:+77968302 | None:intergenic |
| GAATAATGCTTATACCTTCG+GGG | 0.644071 | 7_1:+77966671 | None:intergenic |
| CGCTATCACGACGAACAGCA+CGG | 0.644527 | 7_1:+77967558 | None:intergenic |
| AAAGGAGAAGGACCATATCG+AGG | 0.654659 | 7_1:-77970762 | Msa1040580:CDS |
| ATAATCCACAAATTCAGTCA+AGG | 0.654878 | 7_1:+77966054 | None:intergenic |
| GATCAGCCTGAACTCCCCGA+AGG | 0.665254 | 7_1:-77966685 | Msa1040580:intron |
| TCCCAAATAGCCATTGACCA+AGG | 0.672878 | 7_1:+77971400 | None:intergenic |
| GATGGTTCATGGTGATGACA+AGG | 0.675247 | 7_1:-77967945 | Msa1040580:CDS |
| TGAGAAGGGAGAGAAAGCAA+TGG | 0.680929 | 7_1:-77968103 | Msa1040580:CDS |
| CTTCGGAGAATGGTATTCCG+AGG | 0.682280 | 7_1:-77971603 | Msa1040580:intron |
| CATACCTCCTCGTCACACCA+AGG | 0.697417 | 7_1:+77967359 | None:intergenic |
| GTGCTCGTCATCCTTCACAA+TGG | 0.698351 | 7_1:-77971861 | Msa1040580:exon |
| ACAGTATTAGAAACAAACAG+AGG | 0.698430 | 7_1:+77970791 | None:intergenic |
| GCAAAGAAGTGGTCATACTG+GGG | 0.701004 | 7_1:-77966136 | Msa1040580:CDS |
| CTGGATGGAAGTATTCTCAG+TGG | 0.701549 | 7_1:-77967757 | Msa1040580:CDS |
| ATGGTTCATGGTGATGACAA+GGG | 0.721801 | 7_1:-77967944 | Msa1040580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTAATAGCTAATTTA+TGG | + | chr7_1:77969087-77969106 | None:intergenic | 10.0% |
| !! | AAAATTAAATGAGATTTATT+CGG | + | chr7_1:77970361-77970380 | None:intergenic | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTAAC+TGG | + | chr7_1:77970898-77970917 | None:intergenic | 10.0% |
| !!! | CCATAAAACAAATATTTTTA+AGG | + | chr7_1:77967320-77967339 | None:intergenic | 15.0% |
| !!! | CCTTAAAAATATTTGTTTTA+TGG | - | chr7_1:77967317-77967336 | Msa1040580:intron | 15.0% |
| !!! | TTTATCCCAATTTTAATTTT+TGG | + | chr7_1:77968796-77968815 | None:intergenic | 15.0% |
| !!! | CAAATACTTAATTTTTCAAA+GGG | + | chr7_1:77969006-77969025 | None:intergenic | 15.0% |
| !!! | TCAAATACTTAATTTTTCAA+AGG | + | chr7_1:77969007-77969026 | None:intergenic | 15.0% |
| !! | ATATCAAAATATTAAGCATA+AGG | + | chr7_1:77971092-77971111 | None:intergenic | 15.0% |
| !! | CGAAAAAATTAGTAAATATT+AGG | - | chr7_1:77971499-77971518 | Msa1040580:intron | 15.0% |
| !!! | AGTTTTACTTTGATTTTATA+CGG | - | chr7_1:77971966-77971985 | Msa1040580:five_prime_UTR | 15.0% |
| !!! | AATTCACCTGATTTATTTTT+AGG | - | chr7_1:77966375-77966394 | Msa1040580:intron | 20.0% |
| !!! | TTTTACTATGTTATCTCAAT+TGG | - | chr7_1:77966866-77966885 | Msa1040580:intron | 20.0% |
| !!! | TATTTTAAAAACAAATGTGC+AGG | - | chr7_1:77967083-77967102 | Msa1040580:intron | 20.0% |
| !!! | ATCTTCATTTTCTTTATTTC+TGG | + | chr7_1:77967120-77967139 | None:intergenic | 20.0% |
| !!! | CTTATACCAATTTTAATTGT+AGG | - | chr7_1:77968161-77968180 | Msa1040580:CDS | 20.0% |
| !! | AGAAAGACAAAAATAAAAAG+AGG | + | chr7_1:77968739-77968758 | None:intergenic | 20.0% |
| !! | ACTTCTCCAAAAATTAAAAT+TGG | - | chr7_1:77968787-77968806 | Msa1040580:intron | 20.0% |
| !! | CTTCTCCAAAAATTAAAATT+GGG | - | chr7_1:77968788-77968807 | Msa1040580:intron | 20.0% |
| !!! | ATTTTTTTCTTCTTCAATTC+TGG | + | chr7_1:77968867-77968886 | None:intergenic | 20.0% |
| !! | AGAATTGAAGAAGAAAAAAA+TGG | - | chr7_1:77968866-77968885 | Msa1040580:intron | 20.0% |
| !! | GAATTGAAGAAGAAAAAAAT+GGG | - | chr7_1:77968867-77968886 | Msa1040580:intron | 20.0% |
| !! | ATAATCAATTTCATTTGTCA+TGG | - | chr7_1:77969058-77969077 | Msa1040580:intron | 20.0% |
| !! | TTAGAAAAATGTACTTTCAA+AGG | + | chr7_1:77969488-77969507 | None:intergenic | 20.0% |
| !! | TTCTAAACTATAATTGTTTC+AGG | - | chr7_1:77969511-77969530 | Msa1040580:intron | 20.0% |
| !! | ATAAACTATGAAAATGAGAA+GGG | - | chr7_1:77969830-77969849 | Msa1040580:intron | 20.0% |
| !! | TAAGTTCATAATAAAACTGA+AGG | - | chr7_1:77971010-77971029 | Msa1040580:intron | 20.0% |
| !! | TGGCTATGTATTTAAATTTA+CGG | - | chr7_1:77971122-77971141 | Msa1040580:intron | 20.0% |
| !! | ATGTATTTAAATTTACGGTT+TGG | - | chr7_1:77971127-77971146 | Msa1040580:intron | 20.0% |
| !!! | ACTTAACTAAACATTTTCTT+AGG | + | chr7_1:77971385-77971404 | None:intergenic | 20.0% |
| !! | TTTATGAATGGATTCAGAAA+CGG | + | chr7_1:77966013-77966032 | None:intergenic | 25.0% |
| ! | GAAGAAGAAATGTTTATGAA+TGG | + | chr7_1:77966025-77966044 | None:intergenic | 25.0% |
| ! | GTTTGACCTAAAAATAAATC+AGG | + | chr7_1:77966384-77966403 | None:intergenic | 25.0% |
| !! | ATTTTCATTTATGAGTAGTG+TGG | - | chr7_1:77966421-77966440 | Msa1040580:intron | 25.0% |
| !!! | TTGATTTGGATTGATTTTAC+AGG | - | chr7_1:77966465-77966484 | Msa1040580:intron | 25.0% |
| ! | ATTGAGTACTATGATATTTC+TGG | - | chr7_1:77966508-77966527 | Msa1040580:intron | 25.0% |
| ! | TTAGTTGTTGATCTATACTA+AGG | - | chr7_1:77966650-77966669 | Msa1040580:intron | 25.0% |
| ! | AGAAAAAATTGTGCTATAAC+TGG | + | chr7_1:77966744-77966763 | None:intergenic | 25.0% |
| !!! | TGGTTGTGTTTTTAGAATAA+AGG | - | chr7_1:77967257-77967276 | Msa1040580:intron | 25.0% |
| ! | AAAAAATAATGCCTGATGAA+TGG | + | chr7_1:77967663-77967682 | None:intergenic | 25.0% |
| ! | CAAATTGCTATAACAAAGAA+AGG | + | chr7_1:77967707-77967726 | None:intergenic | 25.0% |
| !! | TCTTTGTTATAGCAATTTGT+TGG | - | chr7_1:77967708-77967727 | Msa1040580:intron | 25.0% |
| ! | TCAACTCTCAATTTCTTATT+TGG | - | chr7_1:77967814-77967833 | Msa1040580:CDS | 25.0% |
| ! | TTATTGGGTGAAATTCATTT+GGG | + | chr7_1:77967903-77967922 | None:intergenic | 25.0% |
| !! | AACAATTATTGTTTCTTGCA+AGG | + | chr7_1:77968038-77968057 | None:intergenic | 25.0% |
| !! | TTCCATCAAATAGTTATTTC+AGG | - | chr7_1:77968253-77968272 | Msa1040580:intron | 25.0% |
| ! | TTCCTGAAATAACTATTTGA+TGG | + | chr7_1:77968258-77968277 | None:intergenic | 25.0% |
| !! | CTGCATTAATTTTTCATCTT+TGG | - | chr7_1:77968310-77968329 | Msa1040580:intron | 25.0% |
| ! | TAAAGCACAAGATATATGAA+AGG | + | chr7_1:77968347-77968366 | None:intergenic | 25.0% |
| ! | ATTGGGATAAACTTTCAAAT+TGG | - | chr7_1:77968805-77968824 | Msa1040580:intron | 25.0% |
| !! | AAAAACCATTGTTATTGATC+TGG | - | chr7_1:77968949-77968968 | Msa1040580:intron | 25.0% |
| ! | TATTAAAATACCTTCTCTTG+TGG | - | chr7_1:77969356-77969375 | Msa1040580:intron | 25.0% |
| !!! | TCGAGATTTTGGAATTATAT+CGG | - | chr7_1:77969537-77969556 | Msa1040580:intron | 25.0% |
| !! | TTTTCTGTATCATAAACACT+TGG | - | chr7_1:77969692-77969711 | Msa1040580:intron | 25.0% |
| ! | GATAAACTATGAAAATGAGA+AGG | - | chr7_1:77969829-77969848 | Msa1040580:intron | 25.0% |
| !!! | AATCTCATTTAATTTTGCAC+AGG | - | chr7_1:77970365-77970384 | Msa1040580:CDS | 25.0% |
| ! | TATTCAGATCATACATACAT+GGG | - | chr7_1:77970521-77970540 | Msa1040580:intron | 25.0% |
| ! | AAGCATACTATCTTAAAATC+TGG | + | chr7_1:77970646-77970665 | None:intergenic | 25.0% |
| !! | TTTTAGGCATTTCATTGTTT+TGG | - | chr7_1:77970677-77970696 | Msa1040580:intron | 25.0% |
| !!! | TTTTAACTGGTAATGAAGAA+AGG | + | chr7_1:77970885-77970904 | None:intergenic | 25.0% |
| ! | TTGAATAATGCTTATACCTT+CGG | + | chr7_1:77971281-77971300 | None:intergenic | 25.0% |
| ! | ACACTTAAGTTATAAAGAGA+CGG | + | chr7_1:77971340-77971359 | None:intergenic | 25.0% |
| ! | TAAAAAACTTTAGTAGAGAG+AGG | - | chr7_1:77971436-77971455 | Msa1040580:CDS | 25.0% |
| ! | AAAAAACTTTAGTAGAGAGA+GGG | - | chr7_1:77971437-77971456 | Msa1040580:CDS | 25.0% |
| ! | TACAATAAGTCAATGAGTAA+AGG | - | chr7_1:77971466-77971485 | Msa1040580:intron | 25.0% |
| ! | ACAATAAGTCAATGAGTAAA+GGG | - | chr7_1:77971467-77971486 | Msa1040580:intron | 25.0% |
| ! | TACAGAGAAATATTCATACA+GGG | + | chr7_1:77971705-77971724 | None:intergenic | 25.0% |
| ! | TTACAGAGAAATATTCATAC+AGG | + | chr7_1:77971706-77971725 | None:intergenic | 25.0% |
| CTTCTTCTTCAATTCCTAAT+CGG | - | chr7_1:77966038-77966057 | Msa1040580:three_prime_UTR | 30.0% | |
| !!! | TGGTTGTTTTGGTTGTTTTT+GGG | + | chr7_1:77966157-77966176 | None:intergenic | 30.0% |
| !!! | TTGGTTGTTTTGGTTGTTTT+TGG | + | chr7_1:77966158-77966177 | None:intergenic | 30.0% |
| AAGGAAGTTAAGAAAGAAAC+TGG | - | chr7_1:77966291-77966310 | Msa1040580:intron | 30.0% | |
| ! | GTTAAGAAAGAAACTGGTTT+AGG | - | chr7_1:77966297-77966316 | Msa1040580:intron | 30.0% |
| ! | TTTAGGTTTGACCAATAAGA+AGG | - | chr7_1:77966314-77966333 | Msa1040580:intron | 30.0% |
| AATAAGAAGGCTGAAAACTT+CGG | - | chr7_1:77966327-77966346 | Msa1040580:intron | 30.0% | |
| !! | GTTGTGTTTGACTTTTGATT+TGG | - | chr7_1:77966451-77966470 | Msa1040580:intron | 30.0% |
| ! | ATTTTACAGGTTGTTGTGAA+TGG | - | chr7_1:77966478-77966497 | Msa1040580:intron | 30.0% |
| ! | TTTTACAGGTTGTTGTGAAT+GGG | - | chr7_1:77966479-77966498 | Msa1040580:intron | 30.0% |
| TGTTGATCTATACTAAGGTT+CGG | - | chr7_1:77966655-77966674 | Msa1040580:intron | 30.0% | |
| !! | AAAACCAATTTTCGAGCTTA+CGG | - | chr7_1:77966684-77966703 | Msa1040580:intron | 30.0% |
| !!! | CTGGTCTATTTTAGTCATAA+GGG | + | chr7_1:77966725-77966744 | None:intergenic | 30.0% |
| !!! | ACTGGTCTATTTTAGTCATA+AGG | + | chr7_1:77966726-77966745 | None:intergenic | 30.0% |
| !! | TAAGAAGCGTTTGAGTTTAT+AGG | - | chr7_1:77966817-77966836 | Msa1040580:intron | 30.0% |
| CAGTATTAGAAACAAACAGA+GGG | + | chr7_1:77967158-77967177 | None:intergenic | 30.0% | |
| ACAGTATTAGAAACAAACAG+AGG | + | chr7_1:77967159-77967178 | None:intergenic | 30.0% | |
| !! | GTTTGTTTCTAATACTGTTC+TGG | - | chr7_1:77967161-77967180 | Msa1040580:intron | 30.0% |
| !! | TTCTAATACTGTTCTGGAAA+AGG | - | chr7_1:77967167-77967186 | Msa1040580:intron | 30.0% |
| ATGTGATTGTTCAACAAGTT+TGG | - | chr7_1:77967237-77967256 | Msa1040580:intron | 30.0% | |
| TAAATAGTCACAGCAAAATC+AGG | + | chr7_1:77967402-77967421 | None:intergenic | 30.0% | |
| TAAATCAGATTCTCCAGATT+TGG | + | chr7_1:77967499-77967518 | None:intergenic | 30.0% | |
| TACATAACAGTTTCACTAGT+TGG | + | chr7_1:77967543-77967562 | None:intergenic | 30.0% | |
| TTACTACTCTAAGTGGATAA+GGG | - | chr7_1:77967566-77967585 | Msa1040580:intron | 30.0% | |
| ATAACAAAGAAAGGAAAGCA+TGG | + | chr7_1:77967698-77967717 | None:intergenic | 30.0% | |
| !! | ATTTTAATACGAGTAGTGCT+AGG | - | chr7_1:77967767-77967786 | Msa1040580:CDS | 30.0% |
| GAAATAGACACTACATAAAG+TGG | + | chr7_1:77967865-77967884 | None:intergenic | 30.0% | |
| TAGTGTCTATTTCGTGATTA+TGG | - | chr7_1:77967872-77967891 | Msa1040580:CDS | 30.0% | |
| CTTATTGGGTGAAATTCATT+TGG | + | chr7_1:77967904-77967923 | None:intergenic | 30.0% | |
| TCATGCACATTTACTTCATA+TGG | - | chr7_1:77968111-77968130 | Msa1040580:CDS | 30.0% | |
| ACGACTCCTACAATTAAAAT+TGG | + | chr7_1:77968170-77968189 | None:intergenic | 30.0% | |
| AAGATATATGAAAGGCCTTA+CGG | + | chr7_1:77968339-77968358 | None:intergenic | 30.0% | |
| ! | AGAGGACTTTTTAAATGAGA+GGG | - | chr7_1:77968522-77968541 | Msa1040580:intron | 30.0% |
| AACCATTAGATCAAATCTAG+TGG | - | chr7_1:77968562-77968581 | Msa1040580:intron | 30.0% | |
| ACCATTAGATCAAATCTAGT+GGG | - | chr7_1:77968563-77968582 | Msa1040580:intron | 30.0% | |
| ! | TTGTCTTTCTAAAAAGTCCT+TGG | - | chr7_1:77968749-77968768 | Msa1040580:intron | 30.0% |
| TTTCTTCTTCAATTCTGGAT+CGG | + | chr7_1:77968862-77968881 | None:intergenic | 30.0% | |
| TTGAGAAAGCAAACTATGAA+TGG | - | chr7_1:77968897-77968916 | Msa1040580:intron | 30.0% | |
| TGAGAAAGCAAACTATGAAT+GGG | - | chr7_1:77968898-77968917 | Msa1040580:intron | 30.0% | |
| ! | ATCTGGAGTTGAAGAAATAA+GGG | - | chr7_1:77968966-77968985 | Msa1040580:intron | 30.0% |
| ! | TGATGATGCATGTTCAAAAT+TGG | - | chr7_1:77969123-77969142 | Msa1040580:intron | 30.0% |
| ATGCATGTTCAAAATTGGAA+TGG | - | chr7_1:77969128-77969147 | Msa1040580:intron | 30.0% | |
| AACCATCAGATCTATATCAA+CGG | + | chr7_1:77969221-77969240 | None:intergenic | 30.0% | |
| AAAGGATAGAAAATCTGTGT+GGG | + | chr7_1:77969470-77969489 | None:intergenic | 30.0% | |
| ! | TTTTGATGTAAAATCTTCCC+AGG | - | chr7_1:77969727-77969746 | Msa1040580:CDS | 30.0% |
| ! | TGCTTATTTGCTAAATCCTT+GGG | + | chr7_1:77970252-77970271 | None:intergenic | 30.0% |
| TTTCTGCAAATTAGTGCAAT+AGG | + | chr7_1:77970290-77970309 | None:intergenic | 30.0% | |
| GTATTCAGATCATACATACA+TGG | - | chr7_1:77970520-77970539 | Msa1040580:intron | 30.0% | |
| GAAATGCCTAAAAAAGAACT+TGG | + | chr7_1:77970670-77970689 | None:intergenic | 30.0% | |
| CAGGTGTTTAGAAATAGAAA+GGG | + | chr7_1:77970837-77970856 | None:intergenic | 30.0% | |
| ACAGGTGTTTAGAAATAGAA+AGG | + | chr7_1:77970838-77970857 | None:intergenic | 30.0% | |
| AAAAAAACAACGCATGTGAT+TGG | - | chr7_1:77970909-77970928 | Msa1040580:intron | 30.0% | |
| TGGACTAATCGGATTTATAT+TGG | - | chr7_1:77970929-77970948 | Msa1040580:intron | 30.0% | |
| ATATCATTCAAAGTGCAAGA+TGG | + | chr7_1:77970991-77971010 | None:intergenic | 30.0% | |
| !! | ATTTTGATATGTCTGCTCAT+TGG | - | chr7_1:77971102-77971121 | Msa1040580:intron | 30.0% |
| ! | TTTTCTTGGTAAACTGTTCT+TGG | - | chr7_1:77971152-77971171 | Msa1040580:intron | 30.0% |
| TTCTTGGTTTATAATGCTTC+AGG | - | chr7_1:77971168-77971187 | Msa1040580:intron | 30.0% | |
| TGAATAATGCTTATACCTTC+GGG | + | chr7_1:77971280-77971299 | None:intergenic | 30.0% | |
| AGGTATAAGCATTATTCAAG+TGG | - | chr7_1:77971282-77971301 | Msa1040580:intron | 30.0% | |
| TATAAGCATTATTCAAGTGG+AGG | - | chr7_1:77971285-77971304 | Msa1040580:intron | 30.0% | |
| AATTAACCATAGTATAGAGC+AGG | + | chr7_1:77971673-77971692 | None:intergenic | 30.0% | |
| ACAGAGAAATATTCATACAG+GGG | + | chr7_1:77971704-77971723 | None:intergenic | 30.0% | |
| CTTATTAAGACCTTGTGTTA+TGG | - | chr7_1:77971750-77971769 | Msa1040580:intron | 30.0% | |
| ATAATCCACAAATTCAGTCA+AGG | + | chr7_1:77971896-77971915 | None:intergenic | 30.0% | |
| !! | TTTTGCTGTCCAAATATTGT+TGG | - | chr7_1:77972028-77972047 | Msa1040580:five_prime_UTR | 30.0% |
| TAACATTCTGTTTCAGGATC+AGG | - | chr7_1:77966064-77966083 | Msa1040580:three_prime_UTR | 35.0% | |
| ! | TTGTTGTGTTTTGTGGTCAT+CGG | + | chr7_1:77966118-77966137 | None:intergenic | 35.0% |
| !!! | GGTTGTTTTGGTTGTTTTTG+GGG | + | chr7_1:77966156-77966175 | None:intergenic | 35.0% |
| !!! | TGTTGTGGTTTTGGTTGTTT+TGG | + | chr7_1:77966168-77966187 | None:intergenic | 35.0% |
| TAAGAACGTGAAGGAAGATT+GGG | + | chr7_1:77966209-77966228 | None:intergenic | 35.0% | |
| AAATTGAAACGTGGAAGGAA+TGG | + | chr7_1:77966235-77966254 | None:intergenic | 35.0% | |
| CCTTCCACGTTTCAATTTAA+CGG | - | chr7_1:77966237-77966256 | Msa1040580:intron | 35.0% | |
| !!! | AACGGCCAAAACTTTTTTGT+AGG | - | chr7_1:77966255-77966274 | Msa1040580:intron | 35.0% |
| ! | CACCACCTACAAAAAAGTTT+TGG | + | chr7_1:77966263-77966282 | None:intergenic | 35.0% |
| !!! | CAAAACTTTTTTGTAGGTGG+TGG | - | chr7_1:77966261-77966280 | Msa1040580:intron | 35.0% |
| ! | GAAGTTTTCAGCCTTCTTAT+TGG | + | chr7_1:77966328-77966347 | None:intergenic | 35.0% |
| AGGTGAATTGAATTGTACCT+CGG | + | chr7_1:77966364-77966383 | None:intergenic | 35.0% | |
| TTTACAGGTTGTTGTGAATG+GGG | - | chr7_1:77966480-77966499 | Msa1040580:intron | 35.0% | |
| ! | ATCTATACTAAGGTTCGGTT+TGG | - | chr7_1:77966660-77966679 | Msa1040580:intron | 35.0% |
| ATTTAAATGACTCTCACCTC+TGG | + | chr7_1:77967219-77967238 | None:intergenic | 35.0% | |
| TGTATCCTTACTACTCTAAG+TGG | - | chr7_1:77967559-77967578 | Msa1040580:CDS | 35.0% | |
| CTTATCCACTTAGAGTAGTA+AGG | + | chr7_1:77967567-77967586 | None:intergenic | 35.0% | |
| CTTACTACTCTAAGTGGATA+AGG | - | chr7_1:77967565-77967584 | Msa1040580:intron | 35.0% | |
| TACTACTCTAAGTGGATAAG+GGG | - | chr7_1:77967567-77967586 | Msa1040580:intron | 35.0% | |
| !! | TACCTTTGAAGCTTAATCAG+TGG | - | chr7_1:77967601-77967620 | Msa1040580:intron | 35.0% |
| ! | AGAAAGGAAAGCATGGTTAA+CGG | + | chr7_1:77967691-77967710 | None:intergenic | 35.0% |
| !! | TTATAGCAATTTGTTGGCTG+TGG | - | chr7_1:77967714-77967733 | Msa1040580:intron | 35.0% |
| ! | TCTTATTTGGTGAAATCACG+TGG | - | chr7_1:77967827-77967846 | Msa1040580:CDS | 35.0% |
| ! | CTTATTTGGTGAAATCACGT+GGG | - | chr7_1:77967828-77967847 | Msa1040580:CDS | 35.0% |
| GCAGAATTCACACTCTTATT+GGG | + | chr7_1:77967918-77967937 | None:intergenic | 35.0% | |
| TGCAGAATTCACACTCTTAT+TGG | + | chr7_1:77967919-77967938 | None:intergenic | 35.0% | |
| TGCTTCCTTTATGAATCATC+TGG | - | chr7_1:77967978-77967997 | Msa1040580:intron | 35.0% | |
| CATCACCAGATGATTCATAA+AGG | + | chr7_1:77967986-77968005 | None:intergenic | 35.0% | |
| ! | TGGTGATGATTCTAGTGAAT+TGG | - | chr7_1:77967998-77968017 | Msa1040580:intron | 35.0% |
| ! | GAGAGGACTTTTTAAATGAG+AGG | - | chr7_1:77968521-77968540 | Msa1040580:intron | 35.0% |
| ! | TTTTTAAATGAGAGGGTGAG+AGG | - | chr7_1:77968529-77968548 | Msa1040580:intron | 35.0% |
| ACCCACTAGATTTGATCTAA+TGG | + | chr7_1:77968567-77968586 | None:intergenic | 35.0% | |
| TGCTGGAATAGGAGAAAATT+TGG | + | chr7_1:77968686-77968705 | None:intergenic | 35.0% | |
| !! | TAGAGTTGATGCAGAGAAAA+TGG | + | chr7_1:77968714-77968733 | None:intergenic | 35.0% |
| TTCTTCTTCAATTCTGGATC+GGG | + | chr7_1:77968861-77968880 | None:intergenic | 35.0% | |
| CAACTCCAGATCAATAACAA+TGG | + | chr7_1:77968957-77968976 | None:intergenic | 35.0% | |
| ! | GATCTGGAGTTGAAGAAATA+AGG | - | chr7_1:77968965-77968984 | Msa1040580:intron | 35.0% |
| ! | TCTGGAGTTGAAGAAATAAG+GGG | - | chr7_1:77968967-77968986 | Msa1040580:intron | 35.0% |
| ATCAGATCTATATCAACGGT+TGG | + | chr7_1:77969217-77969236 | None:intergenic | 35.0% | |
| AACCGTTGATATAGATCTGA+TGG | - | chr7_1:77969216-77969235 | Msa1040580:intron | 35.0% | |
| !! | GAGGAGTATTTATTGTGAGA+GGG | + | chr7_1:77969261-77969280 | None:intergenic | 35.0% |
| !! | AGAGGAGTATTTATTGTGAG+AGG | + | chr7_1:77969262-77969281 | None:intergenic | 35.0% |
| CAAAGGATAGAAAATCTGTG+TGG | + | chr7_1:77969471-77969490 | None:intergenic | 35.0% | |
| !! | GCGTATCTATGAAGAGTATT+TGG | - | chr7_1:77969559-77969578 | Msa1040580:intron | 35.0% |
| TGATACAGAAAACTTGACGA+TGG | + | chr7_1:77969684-77969703 | None:intergenic | 35.0% | |
| ! | AGTGTTTGGAATAAATGCCT+GGG | + | chr7_1:77969747-77969766 | None:intergenic | 35.0% |
| !!! | TTTGCGCTTTTTCAACAGAT+TGG | - | chr7_1:77969970-77969989 | Msa1040580:intron | 35.0% |
| !!! | TTGCGCTTTTTCAACAGATT+GGG | - | chr7_1:77969971-77969990 | Msa1040580:intron | 35.0% |
| ! | ACTTGAACTGAAGCTACTTT+AGG | + | chr7_1:77970042-77970061 | None:intergenic | 35.0% |
| TGAGTATCAGCATCTTTGTA+GGG | + | chr7_1:77970081-77970100 | None:intergenic | 35.0% | |
| TTGAGTATCAGCATCTTTGT+AGG | + | chr7_1:77970082-77970101 | None:intergenic | 35.0% | |
| TACAAAGATGCTGATACTCA+AGG | - | chr7_1:77970081-77970100 | Msa1040580:intron | 35.0% | |
| CAACAACATATTCACAGTTG+CGG | + | chr7_1:77970124-77970143 | None:intergenic | 35.0% | |
| TATTCTCAGTGGGAAATGAA+AGG | - | chr7_1:77970201-77970220 | Msa1040580:intron | 35.0% | |
| !! | AAATGAAAGGTGTTCCTCTA+AGG | - | chr7_1:77970214-77970233 | Msa1040580:intron | 35.0% |
| ! | GTTCCTCTAAGGATTGAAAT+CGG | - | chr7_1:77970225-77970244 | Msa1040580:intron | 35.0% |
| ! | TTCCTCTAAGGATTGAAATC+GGG | - | chr7_1:77970226-77970245 | Msa1040580:intron | 35.0% |
| ! | CTGCTTATTTGCTAAATCCT+TGG | + | chr7_1:77970253-77970272 | None:intergenic | 35.0% |
| CAAGGATTTAGCAAATAAGC+AGG | - | chr7_1:77970251-77970270 | Msa1040580:intron | 35.0% | |
| !! | CGACATTGGTAATGATGATT+TGG | - | chr7_1:77970422-77970441 | Msa1040580:CDS | 35.0% |
| !! | TGGTAATGATGATTTGGTTG+CGG | - | chr7_1:77970428-77970447 | Msa1040580:CDS | 35.0% |
| AAAAGATGATCTTAGCTCCT+TGG | - | chr7_1:77970571-77970590 | Msa1040580:intron | 35.0% | |
| !!! | TGCTTGCCAAGTTCTTTTTT+AGG | - | chr7_1:77970661-77970680 | Msa1040580:intron | 35.0% |
| AAAGGGTTTACTTACCAACT+GGG | + | chr7_1:77970820-77970839 | None:intergenic | 35.0% | |
| !!! | TTTACGGTTTGGTGTTTTCT+TGG | - | chr7_1:77971138-77971157 | Msa1040580:intron | 35.0% |
| TTGGTTTATAATGCTTCAGG+AGG | - | chr7_1:77971171-77971190 | Msa1040580:intron | 35.0% | |
| AGATGTCAAAGCAAAGACAA+AGG | - | chr7_1:77971201-77971220 | Msa1040580:intron | 35.0% | |
| GATGTCAAAGCAAAGACAAA+GGG | - | chr7_1:77971202-77971221 | Msa1040580:intron | 35.0% | |
| GAATAATGCTTATACCTTCG+GGG | + | chr7_1:77971279-77971298 | None:intergenic | 35.0% | |
| CTTAAGTTATAAAGAGACGG+AGG | + | chr7_1:77971337-77971356 | None:intergenic | 35.0% | |
| TGCTTACGATACATATGAGA+CGG | - | chr7_1:77971589-77971608 | Msa1040580:intron | 35.0% | |
| TATGAACCTGCTCTATACTA+TGG | - | chr7_1:77971664-77971683 | Msa1040580:CDS | 35.0% | |
| CAGAGAAATATTCATACAGG+GGG | + | chr7_1:77971703-77971722 | None:intergenic | 35.0% | |
| CCTATAAAGTCCATAACACA+AGG | + | chr7_1:77971763-77971782 | None:intergenic | 35.0% | |
| CCTTGTGTTATGGACTTTAT+AGG | - | chr7_1:77971760-77971779 | Msa1040580:intron | 35.0% | |
| AAGCTACTAGATCTTGATTG+TGG | - | chr7_1:77971837-77971856 | Msa1040580:CDS | 35.0% | |
| GAAGCTAGTTCACCATTTAA+TGG | - | chr7_1:77971868-77971887 | Msa1040580:five_prime_UTR | 35.0% | |
| GCTATACTGCCAACAATATT+TGG | + | chr7_1:77972040-77972059 | None:intergenic | 35.0% | |
| CTGTAATCTCTAGCTAGCTA+GGG | + | chr7_1:77965898-77965917 | None:intergenic | 40.0% | |
| TCTGTAATCTCTAGCTAGCT+AGG | + | chr7_1:77965899-77965918 | None:intergenic | 40.0% | |
| AGAGAGAGAATCTCCTCTTA+CGG | - | chr7_1:77965923-77965942 | Msa1040580:intron | 40.0% | |
| ! | ACCTTGTTGTGTTGGAAAGA+AGG | + | chr7_1:77965986-77966005 | None:intergenic | 40.0% |
| CTTCTTCAATTCCTAATCGG+TGG | - | chr7_1:77966041-77966060 | Msa1040580:three_prime_UTR | 40.0% | |
| ! | ACAGAATGTTACCACCGATT+AGG | + | chr7_1:77966055-77966074 | None:intergenic | 40.0% |
| !! | CGGATTGTTGTTGTGTTTTG+TGG | + | chr7_1:77966125-77966144 | None:intergenic | 40.0% |
| !!! | TTGTTTTTGGGGTTTTGCAG+CGG | + | chr7_1:77966145-77966164 | None:intergenic | 40.0% |
| ! | TAACCTGACTGTTGTGGTTT+TGG | + | chr7_1:77966177-77966196 | None:intergenic | 40.0% |
| GTGAAATAACCTGACTGTTG+TGG | + | chr7_1:77966183-77966202 | None:intergenic | 40.0% | |
| CTAAGAACGTGAAGGAAGAT+TGG | + | chr7_1:77966210-77966229 | None:intergenic | 40.0% | |
| GAATGGTACTAAGAACGTGA+AGG | + | chr7_1:77966218-77966237 | None:intergenic | 40.0% | |
| CCGTTAAATTGAAACGTGGA+AGG | + | chr7_1:77966240-77966259 | None:intergenic | 40.0% | |
| TTGGCCGTTAAATTGAAACG+TGG | + | chr7_1:77966244-77966263 | None:intergenic | 40.0% | |
| !!! | GGCCAAAACTTTTTTGTAGG+TGG | - | chr7_1:77966258-77966277 | Msa1040580:intron | 40.0% |
| GTTGCTATATTCTCAGACCT+TGG | - | chr7_1:77966530-77966549 | Msa1040580:intron | 40.0% | |
| TATTCTCAGACCTTGGTCAA+TGG | - | chr7_1:77966537-77966556 | Msa1040580:intron | 40.0% | |
| ACCTTGGTCAATGGCTATTT+GGG | - | chr7_1:77966546-77966565 | Msa1040580:intron | 40.0% | |
| ATCCATGTCTGACTAAGCTT+AGG | + | chr7_1:77967007-77967026 | None:intergenic | 40.0% | |
| !! | TACTGTTCTGGAAAAGGAGA+AGG | - | chr7_1:77967173-77967192 | Msa1040580:intron | 40.0% |
| CTAGTTGGACGAATAGCAAT+AGG | + | chr7_1:77967528-77967547 | None:intergenic | 40.0% | |
| ! | CACCACTGATTAAGCTTCAA+AGG | + | chr7_1:77967606-77967625 | None:intergenic | 40.0% |
| AGTGGTGCAATGTTGTTAGA+TGG | - | chr7_1:77967619-77967638 | Msa1040580:intron | 40.0% | |
| GTGGTGCAATGTTGTTAGAT+GGG | - | chr7_1:77967620-77967639 | Msa1040580:intron | 40.0% | |
| TAATGCCTGATGAATGGTGT+GGG | + | chr7_1:77967657-77967676 | None:intergenic | 40.0% | |
| ATAATGCCTGATGAATGGTG+TGG | + | chr7_1:77967658-77967677 | None:intergenic | 40.0% | |
| ! | AAGGAAGCATGCAGAATTCA+AGG | + | chr7_1:77967967-77967986 | None:intergenic | 40.0% |
| ACTTGTGTATAGTCCATCTC+AGG | - | chr7_1:77968135-77968154 | Msa1040580:CDS | 40.0% | |
| CTTGTGTATAGTCCATCTCA+GGG | - | chr7_1:77968136-77968155 | Msa1040580:CDS | 40.0% | |
| TTGGTATAAGTACCCTGAGA+TGG | + | chr7_1:77968151-77968170 | None:intergenic | 40.0% | |
| TTCCTCCTTTGTTGCAAAAG+CGG | + | chr7_1:77968218-77968237 | None:intergenic | 40.0% | |
| TTTCATCTTTGGTCTCCGTA+AGG | - | chr7_1:77968321-77968340 | Msa1040580:CDS | 40.0% | |
| !! | GAGAGAGCATTTCAAATGAG+AGG | - | chr7_1:77968504-77968523 | Msa1040580:intron | 40.0% |
| ACGTAACTGAGAGAGAAGAA+AGG | + | chr7_1:77968635-77968654 | None:intergenic | 40.0% | |
| !! | AAATGGCTTTGTGCTGGAAT+AGG | + | chr7_1:77968697-77968716 | None:intergenic | 40.0% |
| GTAGTGTGATTCAAAAGCCA+AGG | + | chr7_1:77968769-77968788 | None:intergenic | 40.0% | |
| TCTTACCGAAAACCCATTCA+TGG | - | chr7_1:77968832-77968851 | Msa1040580:intron | 40.0% | |
| ! | TATGAATGGGTTTCGACTTG+TGG | - | chr7_1:77968911-77968930 | Msa1040580:intron | 40.0% |
| TGTTCAAAATTGGAATGGCG+TGG | - | chr7_1:77969133-77969152 | Msa1040580:intron | 40.0% | |
| ATTTATTGTGAGAGGGTGAG+AGG | + | chr7_1:77969254-77969273 | None:intergenic | 40.0% | |
| ATGCATGCTCATGAAGCAAA+GGG | + | chr7_1:77969417-77969436 | None:intergenic | 40.0% | |
| AATGCATGCTCATGAAGCAA+AGG | + | chr7_1:77969418-77969437 | None:intergenic | 40.0% | |
| !!! | GTTTCAGGTTCTCGAGATTT+TGG | - | chr7_1:77969526-77969545 | Msa1040580:intron | 40.0% |
| ! | CTTTTCTTACCCTTTACGAC+AGG | + | chr7_1:77969590-77969609 | None:intergenic | 40.0% |
| ACTTTACACTACCAGTGTTG+AGG | - | chr7_1:77969634-77969653 | Msa1040580:intron | 40.0% | |
| ! | CAGTGTTTGGAATAAATGCC+TGG | + | chr7_1:77969748-77969767 | None:intergenic | 40.0% |
| CAGGCATTTATTCCAAACAC+TGG | - | chr7_1:77969746-77969765 | Msa1040580:CDS | 40.0% | |
| TTTATTCCAAACACTGGTCG+TGG | - | chr7_1:77969752-77969771 | Msa1040580:CDS | 40.0% | |
| AGGTGCAACTTCTCATTGTT+TGG | - | chr7_1:77969781-77969800 | Msa1040580:intron | 40.0% | |
| GGTGCAACTTCTCATTGTTT+GGG | - | chr7_1:77969782-77969801 | Msa1040580:intron | 40.0% | |
| GCTTACAGTTCGAGTACTAT+AGG | + | chr7_1:77969888-77969907 | None:intergenic | 40.0% | |
| !!! | TGCGCTTTTTCAACAGATTG+GGG | - | chr7_1:77969972-77969991 | Msa1040580:intron | 40.0% |
| ! | TTTTCAACAGATTGGGGTGA+TGG | - | chr7_1:77969978-77969997 | Msa1040580:intron | 40.0% |
| ! | ATGGTTCATGGTGATGACAA+GGG | - | chr7_1:77970003-77970022 | Msa1040580:intron | 40.0% |
| ! | TGAACTGAAGCTACTTTAGG+TGG | + | chr7_1:77970039-77970058 | None:intergenic | 40.0% |
| CGCAACTGTGAATATGTTGT+TGG | - | chr7_1:77970122-77970141 | Msa1040580:intron | 40.0% | |
| GTGAATATGTTGTTGGAAGC+AGG | - | chr7_1:77970129-77970148 | Msa1040580:intron | 40.0% | |
| !! | TGGATGGAAGTATTCTCAGT+GGG | - | chr7_1:77970191-77970210 | Msa1040580:intron | 40.0% |
| CATACATGGGATGAGTTTGT+AGG | - | chr7_1:77970534-77970553 | Msa1040580:intron | 40.0% | |
| AGAGAGTGACACGATTATAG+AGG | + | chr7_1:77970711-77970730 | None:intergenic | 40.0% | |
| GAAAGGGTTTACTTACCAAC+TGG | + | chr7_1:77970821-77970840 | None:intergenic | 40.0% | |
| !! | TGTCTGTTGGTTTCTGTATC+AGG | - | chr7_1:77970859-77970878 | Msa1040580:intron | 40.0% |
| ACGCATGTGATTGGACTAAT+CGG | - | chr7_1:77970918-77970937 | Msa1040580:intron | 40.0% | |
| CATTCAAAGTGCAAGATGGA+AGG | + | chr7_1:77970987-77971006 | None:intergenic | 40.0% | |
| GTTTATAATGCTTCAGGAGG+TGG | - | chr7_1:77971174-77971193 | Msa1040580:intron | 40.0% | |
| AGTTATAAAGAGACGGAGGT+AGG | + | chr7_1:77971333-77971352 | None:intergenic | 40.0% | |
| !! | TGTCTCATTTGAGTTGTGCA+TGG | - | chr7_1:77971357-77971376 | Msa1040580:intron | 40.0% |
| AACTTTAGTAGAGAGAGGGT+TGG | - | chr7_1:77971441-77971460 | Msa1040580:CDS | 40.0% | |
| ACTTTAGTAGAGAGAGGGTT+GGG | - | chr7_1:77971442-77971461 | Msa1040580:CDS | 40.0% | |
| TGCAAAGAAGTGGTCATACT+GGG | - | chr7_1:77971810-77971829 | Msa1040580:CDS | 40.0% | |
| ! | TCAGTCAAGGCACCATTAAA+TGG | + | chr7_1:77971883-77971902 | None:intergenic | 40.0% |
| GCCTTCTTTCCAACACAACA+AGG | - | chr7_1:77965982-77966001 | Msa1040580:three_prime_UTR | 45.0% | |
| !! | ACGGTGTTACCTTGTTGTGT+TGG | + | chr7_1:77965994-77966013 | None:intergenic | 45.0% |
| CGGTGGTAACATTCTGTTTC+AGG | - | chr7_1:77966058-77966077 | Msa1040580:three_prime_UTR | 45.0% | |
| CAACCAAAACCACAACAGTC+AGG | - | chr7_1:77966171-77966190 | Msa1040580:intron | 45.0% | |
| !! | TGTAGGTGGTGGAAAGAAGA+AGG | - | chr7_1:77966272-77966291 | Msa1040580:intron | 45.0% |
| AGGCTGAAAACTTCGGAGAA+TGG | - | chr7_1:77966334-77966353 | Msa1040580:intron | 45.0% | |
| GACCTTGGTCAATGGCTATT+TGG | - | chr7_1:77966545-77966564 | Msa1040580:intron | 45.0% | |
| TCCCAAATAGCCATTGACCA+AGG | + | chr7_1:77966550-77966569 | None:intergenic | 45.0% | |
| TGCACCGTAAGCTCGAAAAT+TGG | + | chr7_1:77966691-77966710 | None:intergenic | 45.0% | |
| AGCCTAAGCTTAGTCAGACA+TGG | - | chr7_1:77967002-77967021 | Msa1040580:intron | 45.0% | |
| AAAGGAGAAGGACCATATCG+AGG | - | chr7_1:77967185-77967204 | Msa1040580:intron | 45.0% | |
| AAGGAGAAGGACCATATCGA+GGG | - | chr7_1:77967186-77967205 | Msa1040580:intron | 45.0% | |
| ATGCTGCTGATAGAAGGACT+AGG | + | chr7_1:77967344-77967363 | None:intergenic | 45.0% | |
| CATAGCATGCTGCTGATAGA+AGG | + | chr7_1:77967350-77967369 | None:intergenic | 45.0% | |
| AAATGTCTTGCCCATTACCC+AGG | - | chr7_1:77967461-77967480 | Msa1040580:CDS | 45.0% | |
| TTTCTTGCAAGGCAGCTTCA+CGG | + | chr7_1:77968027-77968046 | None:intergenic | 45.0% | |
| GTAGGAGTCGTGAGTTTCTT+TGG | - | chr7_1:77968179-77968198 | Msa1040580:CDS | 45.0% | |
| CGTGAGTTTCTTTGGCAAGA+AGG | - | chr7_1:77968187-77968206 | Msa1040580:CDS | 45.0% | |
| !! | ACACACCGCTTTTGCAACAA+AGG | - | chr7_1:77968210-77968229 | Msa1040580:intron | 45.0% |
| AAAGGAGGAAGCAGATACAG+AGG | - | chr7_1:77968228-77968247 | Msa1040580:intron | 45.0% | |
| ! | GAAAGGAAGAGAGGTGCATA+CGG | + | chr7_1:77968618-77968637 | None:intergenic | 45.0% |
| GAGAGAGAAGAAAGGAAGAG+AGG | + | chr7_1:77968627-77968646 | None:intergenic | 45.0% | |
| !! | CAGAGAAAATGGCTTTGTGC+TGG | + | chr7_1:77968703-77968722 | None:intergenic | 45.0% |
| !! | GGAAGCCATGAATGGGTTTT+CGG | + | chr7_1:77968840-77968859 | None:intergenic | 45.0% |
| AATGGCGTGGAGAATATGTC+AGG | - | chr7_1:77969146-77969165 | Msa1040580:intron | 45.0% | |
| CGTGGAGAATATGTCAGGAA+GGG | - | chr7_1:77969151-77969170 | Msa1040580:intron | 45.0% | |
| GAGAGGACATATCAAGTGAG+AGG | + | chr7_1:77969280-77969299 | None:intergenic | 45.0% | |
| CACTACACAACCACAAGAGA+AGG | + | chr7_1:77969369-77969388 | None:intergenic | 45.0% | |
| TGCATGCTCATGAAGCAAAG+GGG | + | chr7_1:77969416-77969435 | None:intergenic | 45.0% | |
| GGATAGAAAATCTGTGTGGG+TGG | + | chr7_1:77969467-77969486 | None:intergenic | 45.0% | |
| TTTGGCAGTTCCTGTCGTAA+AGG | - | chr7_1:77969577-77969596 | Msa1040580:intron | 45.0% | |
| TTGGCAGTTCCTGTCGTAAA+GGG | - | chr7_1:77969578-77969597 | Msa1040580:intron | 45.0% | |
| AGTGAGCTTGAGAAGTTTGC+TGG | - | chr7_1:77969608-77969627 | Msa1040580:intron | 45.0% | |
| TGAGAAGGGAGAGAAAGCAA+TGG | - | chr7_1:77969844-77969863 | Msa1040580:intron | 45.0% | |
| ! | GATGGTTCATGGTGATGACA+AGG | - | chr7_1:77970002-77970021 | Msa1040580:intron | 45.0% |
| ! | TCATGGTGATGACAAGGGAT+TGG | - | chr7_1:77970008-77970027 | Msa1040580:intron | 45.0% |
| CATATTCACAGTTGCGGTAC+AGG | + | chr7_1:77970118-77970137 | None:intergenic | 45.0% | |
| TCCAGGAGAATAGTTGTCTC+TGG | + | chr7_1:77970175-77970194 | None:intergenic | 45.0% | |
| GAGACAACTATTCTCCTGGA+TGG | - | chr7_1:77970175-77970194 | Msa1040580:intron | 45.0% | |
| CACTGAGAATACTTCCATCC+AGG | + | chr7_1:77970192-77970211 | None:intergenic | 45.0% | |
| !! | CTGGATGGAAGTATTCTCAG+TGG | - | chr7_1:77970190-77970209 | Msa1040580:intron | 45.0% |
| ! | ATCGTGTCACTCTCTGATTG+AGG | - | chr7_1:77970716-77970735 | Msa1040580:intron | 45.0% |
| TCAAAACTGTCCTTCCCAGT+TGG | - | chr7_1:77970803-77970822 | Msa1040580:CDS | 45.0% | |
| GGTTTACTTACCAACTGGGA+AGG | + | chr7_1:77970816-77970835 | None:intergenic | 45.0% | |
| CTAAACACCTGTCTGTCTGT+TGG | - | chr7_1:77970846-77970865 | Msa1040580:intron | 45.0% | |
| ACAGAAACCAACAGACAGAC+AGG | + | chr7_1:77970856-77970875 | None:intergenic | 45.0% | |
| GACACTTAGTGTATGCTTGC+TGG | - | chr7_1:77971559-77971578 | Msa1040580:intron | 45.0% | |
| ! | ACTTAGTGTATGCTTGCTGG+AGG | - | chr7_1:77971562-77971581 | Msa1040580:intron | 45.0% |
| CAGTATGACCACTTCTTTGC+AGG | + | chr7_1:77971811-77971830 | None:intergenic | 45.0% | |
| CTGCAAAGAAGTGGTCATAC+TGG | - | chr7_1:77971809-77971828 | Msa1040580:CDS | 45.0% | |
| GCAAAGAAGTGGTCATACTG+GGG | - | chr7_1:77971811-77971830 | Msa1040580:CDS | 45.0% | |
| TGGTGCCTTGACTGAATTTG+TGG | - | chr7_1:77971888-77971907 | Msa1040580:intron | 45.0% | |
| !! | ATAAATAAATAAATACATTT+GGG | + | chr7_1:77966623-77966642 | None:intergenic | 5.0% |
| !! | AATAAATAAATAAATACATT+TGG | + | chr7_1:77966624-77966643 | None:intergenic | 5.0% |
| !! | ATAATTAGATATAAAATATT+TGG | + | chr7_1:77968066-77968085 | None:intergenic | 5.0% |
| AGAGAATCTCCTCTTACGGC+CGG | - | chr7_1:77965927-77965946 | Msa1040580:intron | 50.0% | |
| GGAAAGAAGGCGAGAGAGAA+TGG | + | chr7_1:77965973-77965992 | None:intergenic | 50.0% | |
| GTGCTCGTCATCCTTCACAA+TGG | - | chr7_1:77966086-77966105 | Msa1040580:three_prime_UTR | 50.0% | |
| CTCGTCATCCTTCACAATGG+CGG | - | chr7_1:77966089-77966108 | Msa1040580:three_prime_UTR | 50.0% | |
| TCGTCATCCTTCACAATGGC+GGG | - | chr7_1:77966090-77966109 | Msa1040580:three_prime_UTR | 50.0% | |
| CTTCGGAGAATGGTATTCCG+AGG | - | chr7_1:77966344-77966363 | Msa1040580:intron | 50.0% | |
| CTGGAGCAAAACCCTCGATA+TGG | + | chr7_1:77967200-77967219 | None:intergenic | 50.0% | |
| ! | TATCGAGGGTTTTGCTCCAG+AGG | - | chr7_1:77967200-77967219 | Msa1040580:intron | 50.0% |
| ACCAGTCAGCATGACATGCA+GGG | + | chr7_1:77967292-77967311 | None:intergenic | 50.0% | |
| AACCAGTCAGCATGACATGC+AGG | + | chr7_1:77967293-77967312 | None:intergenic | 50.0% | |
| CTATCAGCAGCATGCTATGC+TGG | - | chr7_1:77967351-77967370 | Msa1040580:intron | 50.0% | |
| ACCCAAGCAACCTGGGTAAT+GGG | + | chr7_1:77967474-77967493 | None:intergenic | 50.0% | |
| TTTGGTCACCCAAGCAACCT+GGG | + | chr7_1:77967481-77967500 | None:intergenic | 50.0% | |
| ATTTGGTCACCCAAGCAACC+TGG | + | chr7_1:77967482-77967501 | None:intergenic | 50.0% | |
| GTTGCTTGGGTGACCAAATC+TGG | - | chr7_1:77967483-77967502 | Msa1040580:CDS | 50.0% | |
| GCAATCCCACACCATTCATC+AGG | - | chr7_1:77967649-77967668 | Msa1040580:intron | 50.0% | |
| !! | CACCGCTTTTGCAACAAAGG+AGG | - | chr7_1:77968213-77968232 | Msa1040580:intron | 50.0% |
| TGGATCGGGAAGCCATGAAT+GGG | + | chr7_1:77968847-77968866 | None:intergenic | 50.0% | |
| GCGTGGAGAATATGTCAGGA+AGG | - | chr7_1:77969150-77969169 | Msa1040580:intron | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr7_1:77968433-77968452 | None:intergenic | 50.0% | |
| !! | GAGCTTGAGAAGTTTGCTGG+TGG | - | chr7_1:77969611-77969630 | Msa1040580:intron | 50.0% |
| TCAGACACACACCTCAACAC+TGG | + | chr7_1:77969648-77969667 | None:intergenic | 50.0% | |
| TGTATGCCACGACCAGTGTT+TGG | + | chr7_1:77969761-77969780 | None:intergenic | 50.0% | |
| AACACTGGTCGTGGCATACA+AGG | - | chr7_1:77969761-77969780 | Msa1040580:CDS | 50.0% | |
| AGGGAGAGAAAGCAATGGTC+TGG | - | chr7_1:77969849-77969868 | Msa1040580:intron | 50.0% | |
| ! | ACAGATTGGGGTGATGGTGA+TGG | - | chr7_1:77969984-77970003 | Msa1040580:intron | 50.0% |
| TCAGCATCTTTGTAGGGCAC+AGG | + | chr7_1:77970075-77970094 | None:intergenic | 50.0% | |
| GCCAGAGACAACTATTCTCC+TGG | - | chr7_1:77970171-77970190 | Msa1040580:intron | 50.0% | |
| GGCCCGATTTCAATCCTTAG+AGG | + | chr7_1:77970231-77970250 | None:intergenic | 50.0% | |
| AAGGATTGAAATCGGGCCCA+AGG | - | chr7_1:77970233-77970252 | Msa1040580:intron | 50.0% | |
| AGCGGAGCAAAGATCGACAT+TGG | - | chr7_1:77970408-77970427 | Msa1040580:CDS | 50.0% | |
| GCAAAGACAAAGGGTGAGAC+AGG | - | chr7_1:77971211-77971230 | Msa1040580:intron | 50.0% | |
| GGGAGTTCAGGCTGATCAAA+GGG | + | chr7_1:77971259-77971278 | None:intergenic | 50.0% | |
| CTTATACCTTCGGGGAGTTC+AGG | + | chr7_1:77971271-77971290 | None:intergenic | 50.0% | |
| AATGGAGCGTGCAAGAGCGA+TGG | + | chr7_1:77965955-77965974 | None:intergenic | 55.0% | |
| CGTCATCCTTCACAATGGCG+GGG | - | chr7_1:77966091-77966110 | Msa1040580:three_prime_UTR | 55.0% | |
| TCCCTGCATGTCATGCTGAC+TGG | - | chr7_1:77967288-77967307 | Msa1040580:intron | 55.0% | |
| TGCCCATTACCCAGGTTGCT+TGG | - | chr7_1:77967469-77967488 | Msa1040580:CDS | 55.0% | |
| GCCCATTACCCAGGTTGCTT+GGG | - | chr7_1:77967470-77967489 | Msa1040580:CDS | 55.0% | |
| CACCCAAGCAACCTGGGTAA+TGG | + | chr7_1:77967475-77967494 | None:intergenic | 55.0% | |
| CTGGATCGGGAAGCCATGAA+TGG | + | chr7_1:77968848-77968867 | None:intergenic | 55.0% | |
| !! | GGGGTGATGGTGATGGTTCA+TGG | - | chr7_1:77969991-77970010 | Msa1040580:intron | 55.0% |
| CGCTATCACGACGAACAGCA+CGG | + | chr7_1:77970392-77970411 | None:intergenic | 55.0% | |
| ! | CGTGCTGTTCGTCGTGATAG+CGG | - | chr7_1:77970390-77970409 | Msa1040580:CDS | 55.0% |
| ! | CTTAGCTCCTTGGTGTGACG+AGG | - | chr7_1:77970581-77970600 | Msa1040580:intron | 55.0% |
| CATACCTCCTCGTCACACCA+AGG | + | chr7_1:77970591-77970610 | None:intergenic | 55.0% | |
| GGGGAGTTCAGGCTGATCAA+AGG | + | chr7_1:77971260-77971279 | None:intergenic | 55.0% | |
| CTTGCCTGACGCAAAGCACA+CGG | + | chr7_1:77971788-77971807 | None:intergenic | 55.0% | |
| CAGGCAAGCCTGCAAAGAAG+TGG | - | chr7_1:77971800-77971819 | Msa1040580:CDS | 55.0% | |
| ATCGGTCCCCGCCATTGTGA+AGG | + | chr7_1:77966100-77966119 | None:intergenic | 60.0% | |
| ! | AGCTCCTTGGTGTGACGAGG+AGG | - | chr7_1:77970584-77970603 | Msa1040580:intron | 60.0% |
| GATCAGCCTGAACTCCCCGA+AGG | - | chr7_1:77971262-77971281 | Msa1040580:intron | 60.0% | |
| GCGTGCAAGAGCGATGGTGC+CGG | + | chr7_1:77965949-77965968 | None:intergenic | 65.0% | |
| GGCACCGTGTGCTTTGCGTC+AGG | - | chr7_1:77971781-77971800 | Msa1040580:CDS | 65.0% | |
| !! | GCGATGGTGCCGGCCGTAAG+AGG | + | chr7_1:77965939-77965958 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 77965882 | 77972087 | 77965882 | ID=Msa1040580;Name=Msa1040580 |
| chr7_1 | mRNA | 77965882 | 77972087 | 77965882 | ID=Msa1040580-mRNA-1;Parent=Msa1040580;Name=Msa1040580-mRNA-1;_AED=0.14;_eAED=0.14;_QI=147|0.84|0.85|1|0.69|0.57|14|209|501 |
| chr7_1 | exon | 77965882 | 77965904 | 77965882 | ID=Msa1040580-mRNA-1:exon:20720;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77965937 | 77966187 | 77965937 | ID=Msa1040580-mRNA-1:exon:20719;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77966686 | 77966779 | 77966686 | ID=Msa1040580-mRNA-1:exon:20718;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77967364 | 77967582 | 77967364 | ID=Msa1040580-mRNA-1:exon:20717;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77967745 | 77967981 | 77967745 | ID=Msa1040580-mRNA-1:exon:20716;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77968068 | 77968220 | 77968068 | ID=Msa1040580-mRNA-1:exon:20715;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77968314 | 77968436 | 77968314 | ID=Msa1040580-mRNA-1:exon:20714;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77969720 | 77969786 | 77969720 | ID=Msa1040580-mRNA-1:exon:20713;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77970326 | 77970486 | 77970326 | ID=Msa1040580-mRNA-1:exon:20712;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77970748 | 77970864 | 77970748 | ID=Msa1040580-mRNA-1:exon:20711;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77971390 | 77971482 | 77971390 | ID=Msa1040580-mRNA-1:exon:20710;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77971604 | 77971692 | 77971604 | ID=Msa1040580-mRNA-1:exon:20709;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77971777 | 77971889 | 77971777 | ID=Msa1040580-mRNA-1:exon:20708;Parent=Msa1040580-mRNA-1 |
| chr7_1 | exon | 77971966 | 77972087 | 77971966 | ID=Msa1040580-mRNA-1:exon:20707;Parent=Msa1040580-mRNA-1 |
| chr7_1 | five_prime_UTR | 77971966 | 77972087 | 77971966 | ID=Msa1040580-mRNA-1:five_prime_utr;Parent=Msa1040580-mRNA-1 |
| chr7_1 | five_prime_UTR | 77971865 | 77971889 | 77971865 | ID=Msa1040580-mRNA-1:five_prime_utr;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77971777 | 77971864 | 77971777 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77971604 | 77971692 | 77971604 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77971390 | 77971482 | 77971390 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77970748 | 77970864 | 77970748 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77970326 | 77970486 | 77970326 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77969720 | 77969786 | 77969720 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77968314 | 77968436 | 77968314 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77968068 | 77968220 | 77968068 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77967745 | 77967981 | 77967745 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77967364 | 77967582 | 77967364 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77966686 | 77966779 | 77966686 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | CDS | 77966123 | 77966187 | 77966123 | ID=Msa1040580-mRNA-1:cds;Parent=Msa1040580-mRNA-1 |
| chr7_1 | three_prime_UTR | 77965937 | 77966122 | 77965937 | ID=Msa1040580-mRNA-1:three_prime_utr;Parent=Msa1040580-mRNA-1 |
| chr7_1 | three_prime_UTR | 77965882 | 77965904 | 77965882 | ID=Msa1040580-mRNA-1:three_prime_utr;Parent=Msa1040580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
