AlfalfaGEDB | Msa0683780

M. sativa cultivar zhongmu-4 / Msa0683780

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683780	XP_024636636.1	100.000	55	0	0	1	55	1	55	3.47e-32	115

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683780	sp\|P0DO45\|ATP6B_ARATH	81.818	55	10	0	1	55	1	55	7.07e-29	99.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683780	G7JTP1	100.000	55	0	0	1	55	1	55	1.66e-32	115

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006880	Msa0683780	0.852455	4.565456e-61	-8.615850e-47
Msa0007850	Msa0683780	0.835006	2.156777e-56	-8.615850e-47
Msa0008090	Msa0683780	0.839205	1.821111e-57	-8.615850e-47
Msa0027580	Msa0683780	0.809534	1.804839e-50	-8.615850e-47
Msa0031510	Msa0683780	0.828224	1.012631e-54	-8.615850e-47
Msa0033880	Msa0683780	0.835152	1.981365e-56	-8.615850e-47
Msa0042280	Msa0683780	0.801636	8.202398e-49	-8.615850e-47
Msa0043860	Msa0683780	0.830684	2.556802e-55	-8.615850e-47
Msa0045730	Msa0683780	0.815947	7.120727e-52	-8.615850e-47
Msa0048180	Msa0683780	0.822912	1.838038e-53	-8.615850e-47

Showing 1 to 10 of 298 entries

Previous1 2 3 4 5…30Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683780	MtrunA17_Chr4g0030851	100.000	55	0	0	1	55	1	55	3.19e-36	115
Msa0683780	MtrunA17_Chr2g0327811	89.091	55	6	0	1	55	1	55	7.42e-32	103

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683780	AT3G46430.1	81.818	55	10	1	55	1	55	7.19e-30	99.4
Msa0683780	AT5G59613.1	81.818	55	10	1	55	1	55	7.19e-30	99.4
Msa0683780	AT5G59613.2	81.818	55	10	1	55	1	55	7.19e-30	99.4

Showing 1 to 3 of 3 entries

Previous1Next

Find 16 sgRNAs with CRISPR-Local

Find 26 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGAGACAGTTCGATCCA+TGG	0.569004	4_4:+46697169	Msa0683780:exon
AAATTCTCTCTTGGTCTTAC+CGG	0.353041	4_4:+46697270	Msa0683780:CDS
AATTCGTTCAGCATCACAAA+AGG	0.536789	4_4:+46697417	Msa0683780:CDS
ACGGCGAATCCAACGAGGAA+TGG	0.540309	4_4:-46697228	None:intergenic
AGAGAGAATGGAAACGTACT+TGG	0.486234	4_4:+46697205	Msa0683780:CDS
CATTCTCTCTTGAAGAAAAC+TGG	0.292105	4_4:-46697192	None:intergenic
CGGTGACGGCGAATCCAACG+AGG	0.732353	4_4:-46697233	None:intergenic
CGTACTTGGCCATTCCTCGT+TGG	0.562709	4_4:+46697219	Msa0683780:CDS
CTCGTTGGATTCGCCGTCAC+CGG	0.441426	4_4:+46697234	Msa0683780:CDS
CTCTTGAAGAAAACTGGCCA+TGG	0.493329	4_4:-46697186	None:intergenic

Showing 1 to 10 of 16 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CAAAAATGGTAGAGTTTAGA+TGG	-	chr4_4:46697050-46697069	None:intergenic	30.0%
TGTAACAAAAACCGTAACTT+TGG	+	chr4_4:46697068-46697087	Msa0683780:five_prime_UTR	30.0%
CATTCTCTCTTGAAGAAAAC+TGG	-	chr4_4:46697195-46697214	None:intergenic	35.0%
TTTGTGATGCTGAACGAATT+TGG	-	chr4_4:46697417-46697436	None:intergenic	35.0%
AATTCGTTCAGCATCACAAA+AGG	+	chr4_4:46697417-46697436	Msa0683780:CDS	35.0%
TCTTCGTCACACCAAAGTTA+CGG	-	chr4_4:46697082-46697101	None:intergenic	40.0%
AAATGAGACAGTTCGATCCA+TGG	+	chr4_4:46697169-46697188	Msa0683780:exon	40.0%
AGAGAGAATGGAAACGTACT+TGG	+	chr4_4:46697205-46697224	Msa0683780:CDS	40.0%
CTTGTCACCAAATTCTCTCT+TGG	+	chr4_4:46697261-46697280	Msa0683780:CDS	40.0%
GGTAAGACCAAGAGAGAATT+TGG	-	chr4_4:46697271-46697290	None:intergenic	40.0%

Showing 1 to 10 of 26 entries

Previous1 2 3Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	46697035	46697442	46697035	ID=Msa0683780;Name=Msa0683780
chr4_4	mRNA	46697035	46697442	46697035	ID=Msa0683780-mRNA-1;Parent=Msa0683780;Name=Msa0683780-mRNA-1;_AED=0.28;_eAED=0.28;_QI=136\|1\|0.5\|1\|1\|1\|2\|0\|55
chr4_4	exon	46697035	46697291	46697035	ID=Msa0683780-mRNA-1:exon:11528;Parent=Msa0683780-mRNA-1
chr4_4	exon	46697396	46697442	46697396	ID=Msa0683780-mRNA-1:exon:11529;Parent=Msa0683780-mRNA-1
chr4_4	five_prime_UTR	46697035	46697170	46697035	ID=Msa0683780-mRNA-1:five_prime_utr;Parent=Msa0683780-mRNA-1
chr4_4	CDS	46697171	46697291	46697171	ID=Msa0683780-mRNA-1:cds;Parent=Msa0683780-mRNA-1
chr4_4	CDS	46697396	46697442	46697396	ID=Msa0683780-mRNA-1:cds;Parent=Msa0683780-mRNA-1

Gene Sequence	>Msa0683780 ATGAGACAGTTCGATCCATGGCCAGTTTTCTTCAAGAGAGAATGGAAACGTACTTGGCCATTCCTCGTTGGATTCGCCGTCACCGGAGCTCTTGTCACCAAATTCTCTCTTGGTCTTACCGAGGAAGATGCTAAGAATTCCAAATTCGTTCAGCATCACAAAAGGTAA
Protein sequence	>Msa0683780 MRQFDPWPVFFKREWKRTWPFLVGFAVTGALVTKFSLGLTEEDAKNSKFVQHHKR*