AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1054550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054550 MtrunA17_Chr7g0224841 97.260 73 2 0 1 73 1 73 1.66e-46 142
Msa1054550 MtrunA17_Chr3g0078571 75.676 74 14 2 1 73 1 71 1.00e-32 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054550 AT5G14105.1 63.514 74 25 1 1 72 1 74 7.78e-23 83.2

Find 37 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACAACAATATGAAATTA+TGG 0.248335 7_2:-26431967 Msa1054550:three_prime_UTR
GCGCTGTGGTTCTTCTATTA+AGG 0.278237 7_2:-26436860 Msa1054550:CDS
TTTGACGTTGCGTTTGAAAA+TGG 0.285769 7_2:+26436815 None:intergenic
AACCTTGATATGTTAACTTT+TGG 0.292766 7_2:-26431874 Msa1054550:three_prime_UTR
TCACGAACACCACTGTTCTA+TGG 0.313907 7_2:+26436944 None:intergenic
TGCTGAGAGTGAGAGCCTTC+TGG 0.340121 7_2:-26431901 Msa1054550:three_prime_UTR
TCGTCCTTAGGAGTGTCTTT+TGG 0.371851 7_2:+26432171 None:intergenic
TGAAAAGACTGCAAAGGAAC+TGG 0.397284 7_2:-26432208 Msa1054550:CDS
AATTTCATAATAACCGTTGC+TGG 0.416636 7_2:-26436888 Msa1054550:CDS
GAACAGTGGTGTTCGTGAAT+CGG 0.429289 7_2:-26436939 Msa1054550:five_prime_UTR
CTCCAAAAGTTAACATATCA+AGG 0.451707 7_2:+26431872 None:intergenic
ATCCATCATTAGCCAGTAAG+AGG 0.457307 7_2:+26432078 None:intergenic
ACGTCAAACAAATTCGTCAT+TGG 0.463772 7_2:-26436800 Msa1054550:CDS
CATAAACATTAGTCGTCCTT+AGG 0.467557 7_2:+26432159 None:intergenic
CACCTCTTACTGGCTAATGA+TGG 0.496892 7_2:-26432080 Msa1054550:three_prime_UTR
CGGCGTGTGAAGAGGAGTGA+TGG 0.512808 7_2:-26436919 Msa1054550:exon
TTCTTACTTTGAAGAATTAG+CGG 0.513230 7_2:+26436764 None:intergenic
TATGTTGCTGATAGAGTGAT+GGG 0.513608 7_2:-26432140 Msa1054550:three_prime_UTR
CACTGTTCTATGGTTGCCAA+GGG 0.527243 7_2:+26436954 None:intergenic
TGCAAAGGAACTGGAATCAA+AGG 0.527472 7_2:-26432199 Msa1054550:CDS
TTAAAATTATTCACTAACAA+TGG 0.538428 7_2:+26431986 None:intergenic
CAATGTCTAAATATAAGTCA+TGG 0.542703 7_2:-26432014 Msa1054550:three_prime_UTR
CCACTGTTCTATGGTTGCCA+AGG 0.549480 7_2:+26436953 None:intergenic
TCGTGAATCGGCGTGTGAAG+AGG 0.550664 7_2:-26436927 Msa1054550:five_prime_UTR
ATGCAGATATGCTAAAACCT+AGG 0.557553 7_2:+26431932 None:intergenic
TATGCTAAAACCTAGGACTG+TGG 0.587010 7_2:+26431939 None:intergenic
TTATGTTGCTGATAGAGTGA+TGG 0.608598 7_2:-26432141 Msa1054550:three_prime_UTR
GAAAATTGAAAAGACTGCAA+AGG 0.609181 7_2:-26432214 Msa1054550:CDS
GGCGTGTGAAGAGGAGTGAT+GGG 0.612061 7_2:-26436918 Msa1054550:exon
CACAGCGCTAACACCAGCAA+CGG 0.616070 7_2:+26436875 None:intergenic
TACTCCAAAAGACACTCCTA+AGG 0.618231 7_2:-26432175 Msa1054550:CDS
CGTTGCTGGTGTTAGCGCTG+TGG 0.622803 7_2:-26436874 Msa1054550:CDS
ATATCAAGGTTACAGCCAGA+AGG 0.627148 7_2:+26431886 None:intergenic
TTGCTGATAGAGTGATGGGG+TGG 0.628428 7_2:-26432136 Msa1054550:three_prime_UTR
GACGTTGCGTTTGAAAATGG+AGG 0.631098 7_2:+26436818 None:intergenic
ATGTTGCTGATAGAGTGATG+GGG 0.674013 7_2:-26432139 Msa1054550:three_prime_UTR
CCTTGGCAACCATAGAACAG+TGG 0.741346 7_2:-26436953 Msa1054550:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAACAAAAAATTTCTTT+TGG - chr7_2:26431836-26431855 Msa1054550:three_prime_UTR 10.0%
!!! ATAAGTTTTTTTAAAATACA+AGG - chr7_2:26432722-26432741 Msa1054550:intron 10.0%
!!! TTATTTTTTCTGTTTAAATA+AGG - chr7_2:26434506-26434525 Msa1054550:intron 10.0%
!! TACATTGATAAATTAATTAA+AGG + chr7_2:26436285-26436304 None:intergenic 10.0%
!! AAAAAAACTTATTATCAATC+AGG + chr7_2:26432714-26432733 None:intergenic 15.0%
!! TTATTCCCTATAAATAATAA+CGG + chr7_2:26433081-26433100 None:intergenic 15.0%
!! GTACATTTGAATAAATAAAA+TGG + chr7_2:26434290-26434309 None:intergenic 15.0%
!! GTACATTTGAATAAATAAAA+TGG + chr7_2:26434290-26434309 None:intergenic 15.0%
!!! TTATTTATTGCCATTTTTTA+TGG - chr7_2:26434473-26434492 Msa1054550:intron 15.0%
!!! GTTCATATTAAACTATTTTA+AGG + chr7_2:26435008-26435027 None:intergenic 15.0%
!!! TTTTTCTTCAAATTTTACTA+AGG - chr7_2:26435826-26435845 Msa1054550:intron 15.0%
!! AGATTATAATTTGATGAATT+TGG - chr7_2:26436155-26436174 Msa1054550:intron 15.0%
!! ACTAAATTGCAATATTTAAT+GGG - chr7_2:26436433-26436452 Msa1054550:intron 15.0%
!!! ACTTTTAATTAATTCAAACA+TGG + chr7_2:26436514-26436533 None:intergenic 15.0%
!! TTAAAATTATTCACTAACAA+TGG + chr7_2:26436869-26436888 None:intergenic 15.0%
!! TTAACAACAATATGAAATTA+TGG - chr7_2:26436885-26436904 Msa1054550:CDS 15.0%
!! AAGAAGAGAAAAATAGATAA+GGG + chr7_2:26432115-26432134 None:intergenic 20.0%
!! AAAGAAGAGAAAAATAGATA+AGG + chr7_2:26432116-26432135 None:intergenic 20.0%
!!! TCTATTTTTCTCTTCTTTTT+TGG - chr7_2:26432118-26432137 Msa1054550:three_prime_UTR 20.0%
!! GGAAAATGTAAATAATTGAA+TGG - chr7_2:26433434-26433453 Msa1054550:intron 20.0%
!!! TTATCTAAATCTAGTTCAAA+TGG + chr7_2:26433920-26433939 None:intergenic 20.0%
!!! TTTGCTTTTCAATTTTTTTG+TGG - chr7_2:26434255-26434274 Msa1054550:intron 20.0%
!!! TTTTCAATTTTTTTGTGGAA+TGG - chr7_2:26434260-26434279 Msa1054550:intron 20.0%
!! TTTATTCAAATGTACTACAA+AGG - chr7_2:26434295-26434314 Msa1054550:intron 20.0%
!! TTTATTCAAATGTACTACAA+AGG - chr7_2:26434295-26434314 Msa1054550:intron 20.0%
!! CAAGGTAAAAGAAAAAAATA+AGG + chr7_2:26435089-26435108 None:intergenic 20.0%
!!! TTTGCTTTTCAATATTTTTG+TGG - chr7_2:26435652-26435671 Msa1054550:intron 20.0%
!!! TTTTCAATATTTTTGTGGAA+CGG - chr7_2:26435657-26435676 Msa1054550:intron 20.0%
!! CTTATGACAATAAATAAAAG+AGG + chr7_2:26435793-26435812 None:intergenic 20.0%
!!! CTCTTTTATTTATTGTCATA+AGG - chr7_2:26435791-26435810 Msa1054550:intron 20.0%
!! GACTAAATTGCAATATTTAA+TGG - chr7_2:26436432-26436451 Msa1054550:intron 20.0%
!!! ACTGTTTTTTGTTTTCTTTT+TGG - chr7_2:26436565-26436584 Msa1054550:intron 20.0%
!! TTCTTACTTTGAAGAATTAG+CGG + chr7_2:26432091-26432110 None:intergenic 25.0%
! TATCTGGTCTATAATATTGA+CGG - chr7_2:26432183-26432202 Msa1054550:CDS 25.0%
! GTTGAATTTGTAAAAATGTG+TGG - chr7_2:26432409-26432428 Msa1054550:intron 25.0%
!! TTTAGGATATTCATATTCTC+AGG - chr7_2:26432779-26432798 Msa1054550:intron 25.0%
! TTAGGATATTCATATTCTCA+GGG - chr7_2:26432780-26432799 Msa1054550:intron 25.0%
!! GAATTTAATTGCAAACGTTT+TGG + chr7_2:26433349-26433368 None:intergenic 25.0%
! TGTTGACAGTAGTTATAATT+TGG - chr7_2:26433412-26433431 Msa1054550:intron 25.0%
! GTTGACAGTAGTTATAATTT+GGG - chr7_2:26433413-26433432 Msa1054550:intron 25.0%
!! CACATGAAAAACAAAGTTTT+TGG + chr7_2:26433588-26433607 None:intergenic 25.0%
!!! TTTGTTTTTCATGTGTGATT+AGG - chr7_2:26433593-26433612 Msa1054550:intron 25.0%
!!! TTGTTTTTCATGTGTGATTA+GGG - chr7_2:26433594-26433613 Msa1054550:intron 25.0%
!!! ATGCATAAACTTTTGTTTAC+AGG - chr7_2:26433843-26433862 Msa1054550:intron 25.0%
!! CATATCTTTCATCTATTTCT+TGG + chr7_2:26434016-26434035 None:intergenic 25.0%
! AAAATGGCAATAAATAACAG+AGG + chr7_2:26434470-26434489 None:intergenic 25.0%
!!! ATTTTTTTCAAACAAGCAAG+TGG + chr7_2:26434677-26434696 None:intergenic 25.0%
!! AAAGAGTAGAAAATCCTTTT+GGG + chr7_2:26434866-26434885 None:intergenic 25.0%
!! AAAAGAGTAGAAAATCCTTT+TGG + chr7_2:26434867-26434886 None:intergenic 25.0%
! ATTTATAGTGTAACCATGTA+GGG - chr7_2:26435157-26435176 Msa1054550:intron 25.0%
! TATTTATTGTCATAAGGTCT+AGG - chr7_2:26435797-26435816 Msa1054550:intron 25.0%
! ATTTATTGTCATAAGGTCTA+GGG - chr7_2:26435798-26435817 Msa1054550:intron 25.0%
! TAATTCAATGAGTTAACACT+AGG - chr7_2:26436106-26436125 Msa1054550:intron 25.0%
!!! AAGCTTTATGATTACTTTTG+TGG - chr7_2:26436319-26436338 Msa1054550:intron 25.0%
! TGAACTAAACTCTATTTCAA+CGG + chr7_2:26436371-26436390 None:intergenic 25.0%
! AATATTTAATGGGAGAAGAT+GGG - chr7_2:26436443-26436462 Msa1054550:intron 25.0%
! CAATGTCTAAATATAAGTCA+TGG - chr7_2:26436838-26436857 Msa1054550:CDS 25.0%
!! AACCTTGATATGTTAACTTT+TGG - chr7_2:26436978-26436997 Msa1054550:five_prime_UTR 25.0%
AATTTCATAATAACCGTTGC+TGG - chr7_2:26431964-26431983 Msa1054550:three_prime_UTR 30.0%
TATTGAGTGATTGATGTATC+TGG - chr7_2:26432167-26432186 Msa1054550:CDS 30.0%
GGAAAATGAATCATATCTTG+AGG - chr7_2:26432430-26432449 Msa1054550:intron 30.0%
TCAACACTTACTATATGTTC+TGG + chr7_2:26432674-26432693 None:intergenic 30.0%
AATCTATTAAGCTCTCAAGT+TGG + chr7_2:26432749-26432768 None:intergenic 30.0%
ACTTGAGAGCTTAATAGATT+CGG - chr7_2:26432749-26432768 Msa1054550:intron 30.0%
! ATAGATTCGGGAATCTTTTT+AGG - chr7_2:26432762-26432781 Msa1054550:intron 30.0%
ATAAATAATAACGGCGTGTT+GGG + chr7_2:26433072-26433091 None:intergenic 30.0%
TATAAATAATAACGGCGTGT+TGG + chr7_2:26433073-26433092 None:intergenic 30.0%
AACACGCCGTTATTATTTAT+AGG - chr7_2:26433072-26433091 Msa1054550:intron 30.0%
ACACGCCGTTATTATTTATA+GGG - chr7_2:26433073-26433092 Msa1054550:intron 30.0%
TTGTAAAAAGAGCAAGTATG+TGG + chr7_2:26433552-26433571 None:intergenic 30.0%
AACCAGAGAATTTGTATTAC+TGG - chr7_2:26433637-26433656 Msa1054550:intron 30.0%
TTCCAGTAATACAAATTCTC+TGG + chr7_2:26433642-26433661 None:intergenic 30.0%
! ATGTTTTCATTATCCTCTCA+AGG + chr7_2:26433719-26433738 None:intergenic 30.0%
ATTTATAGTGTAGCCATGTA+AGG - chr7_2:26433768-26433787 Msa1054550:intron 30.0%
TTTATAGTGTAGCCATGTAA+GGG - chr7_2:26433769-26433788 Msa1054550:intron 30.0%
!! GTATACTGCTAATGTTGTTT+TGG - chr7_2:26433813-26433832 Msa1054550:intron 30.0%
GCAACAATTCTTCATATTGA+TGG - chr7_2:26434038-26434057 Msa1054550:intron 30.0%
! AAGACTGTGTTAAGTTTTAC+TGG + chr7_2:26434220-26434239 None:intergenic 30.0%
! ATGTACTACAAAGGTTTTTG+TGG - chr7_2:26434304-26434323 Msa1054550:intron 30.0%
AACAGAAAAAATAAATCCCC+TGG + chr7_2:26434500-26434519 None:intergenic 30.0%
CAATGAGTTAAAATATCGCA+TGG + chr7_2:26434630-26434649 None:intergenic 30.0%
!! TTGGTTATTAGCTTGTTAGT+AGG - chr7_2:26434835-26434854 Msa1054550:intron 30.0%
TAATTCATTGAGTTAACCCT+AGG - chr7_2:26434900-26434919 Msa1054550:intron 30.0%
AATTCATTGAGTTAACCCTA+GGG - chr7_2:26434901-26434920 Msa1054550:intron 30.0%
! TTGTTTTCATCAACTTCTCA+AGG + chr7_2:26435107-26435126 None:intergenic 30.0%
! GTTGATGAAAACAATGAAAG+TGG - chr7_2:26435113-26435132 Msa1054550:intron 30.0%
GATTTATAGTGTAACCATGT+AGG - chr7_2:26435156-26435175 Msa1054550:intron 30.0%
TTTATAGTGTAACCATGTAG+GGG - chr7_2:26435158-26435177 Msa1054550:intron 30.0%
!! TATGCGTAAACTTTTGTTTC+AGG - chr7_2:26435237-26435256 Msa1054550:intron 30.0%
!! ATGCGTAAACTTTTGTTTCA+GGG - chr7_2:26435238-26435257 Msa1054550:intron 30.0%
TGCTAAGTTATAGTAAGAAG+TGG - chr7_2:26435402-26435421 Msa1054550:intron 30.0%
CAAACTTTAATACAGACACT+GGG + chr7_2:26435568-26435587 None:intergenic 30.0%
TCAAACTTTAATACAGACAC+TGG + chr7_2:26435569-26435588 None:intergenic 30.0%
TTTATTGTCATAAGGTCTAG+GGG - chr7_2:26435799-26435818 Msa1054550:intron 30.0%
! GATCATGCAACATTTTTCTA+TGG - chr7_2:26435912-26435931 Msa1054550:intron 30.0%
! TGCAACATTTTTCTATGGAT+TGG - chr7_2:26435917-26435936 Msa1054550:intron 30.0%
!!! CATTTTTCTATGGATTGGTT+TGG - chr7_2:26435922-26435941 Msa1054550:intron 30.0%
AAAACTTCAGACAACATTGT+AGG - chr7_2:26436036-26436055 Msa1054550:intron 30.0%
TCTGAGAGATTTATAGCTTA+TGG + chr7_2:26436138-26436157 None:intergenic 30.0%
CAATATTTAATGGGAGAAGA+TGG - chr7_2:26436442-26436461 Msa1054550:intron 30.0%
GATAATGATTTGAACACAGA+AGG - chr7_2:26436480-26436499 Msa1054550:intron 30.0%
! TGTTTTGTATTGTCTATTGC+AGG - chr7_2:26436616-26436635 Msa1054550:intron 30.0%
GAAAATTGAAAAGACTGCAA+AGG - chr7_2:26436638-26436657 Msa1054550:intron 30.0%
CTCCAAAAGTTAACATATCA+AGG + chr7_2:26436983-26437002 None:intergenic 30.0%
TTTGACGTTGCGTTTGAAAA+TGG + chr7_2:26432040-26432059 None:intergenic 35.0%
ACGTCAAACAAATTCGTCAT+TGG - chr7_2:26432052-26432071 Msa1054550:three_prime_UTR 35.0%
GTGTGTGTGTATGAACTAAA+TGG - chr7_2:26432276-26432295 Msa1054550:intron 35.0%
TAAATGGATAGTGATGTGTC+CGG - chr7_2:26432292-26432311 Msa1054550:intron 35.0%
GATGACGCTTATATAGAGAA+AGG - chr7_2:26432452-26432471 Msa1054550:intron 35.0%
! ACTTACTATATGTTCTGGAC+CGG + chr7_2:26432669-26432688 None:intergenic 35.0%
CTTGAGAGCTTAATAGATTC+GGG - chr7_2:26432750-26432769 Msa1054550:intron 35.0%
!! TGGAAGCATTATACAAAGCT+AGG - chr7_2:26432810-26432829 Msa1054550:intron 35.0%
!! GGAAGCATTATACAAAGCTA+GGG - chr7_2:26432811-26432830 Msa1054550:intron 35.0%
TCTGCCAAGTTTAAGCTTTA+AGG - chr7_2:26433257-26433276 Msa1054550:intron 35.0%
GTCACCTTAAAGCTTAAACT+TGG + chr7_2:26433264-26433283 None:intergenic 35.0%
TTGAATGGAACGAAATGTGT+CGG - chr7_2:26433449-26433468 Msa1054550:intron 35.0%
AATTTGTAGTGCTAGTGATG+TGG - chr7_2:26433503-26433522 Msa1054550:intron 35.0%
AGCAAGTATGTGGTGAAAAA+TGG + chr7_2:26433542-26433561 None:intergenic 35.0%
!!! GGGTTTTAAACCAGTGTAAT+AGG - chr7_2:26433614-26433633 Msa1054550:intron 35.0%
CAAGGAAACGGACAAAAATT+AGG + chr7_2:26433701-26433720 None:intergenic 35.0%
TCATTATCCTCTCAAGGAAA+CGG + chr7_2:26433713-26433732 None:intergenic 35.0%
! CTACAAAGGTTTTTGTGGAA+TGG - chr7_2:26434309-26434328 Msa1054550:intron 35.0%
!!! ATTGCCATTTTTTATGGTCC+AGG - chr7_2:26434479-26434498 Msa1054550:intron 35.0%
!!! TTGCCATTTTTTATGGTCCA+GGG - chr7_2:26434480-26434499 Msa1054550:intron 35.0%
TGTGTGATCAATTAGACTCA+AGG - chr7_2:26434588-26434607 Msa1054550:intron 35.0%
AACTCATTGAGTTTAACCCA+AGG - chr7_2:26434641-26434660 Msa1054550:intron 35.0%
ACTCATTGAGTTTAACCCAA+GGG - chr7_2:26434642-26434661 Msa1054550:intron 35.0%
TTTCAAACAAGCAAGTGGAA+TGG + chr7_2:26434672-26434691 None:intergenic 35.0%
! ATCATGCAACCTTTTCATCT+GGG - chr7_2:26434724-26434743 Msa1054550:intron 35.0%
TTAGCTCAGAGTTGTTGAAT+TGG - chr7_2:26434816-26434835 Msa1054550:intron 35.0%
TTATTTGTTCAGCCAACAAC+AGG + chr7_2:26435270-26435289 None:intergenic 35.0%
! TTGTTGGCTGAACAAATAAC+TGG - chr7_2:26435271-26435290 Msa1054550:intron 35.0%
!! TTTCTATGGATTGGTTTGGA+AGG - chr7_2:26435926-26435945 Msa1054550:intron 35.0%
!! TTCTATGGATTGGTTTGGAA+GGG - chr7_2:26435927-26435946 Msa1054550:intron 35.0%
ACATGCTAATTAGTTCACAC+AGG - chr7_2:26435997-26436016 Msa1054550:intron 35.0%
TGTAGGATTAGACTCAGAAA+AGG - chr7_2:26436053-26436072 Msa1054550:intron 35.0%
CATAAACATTAGTCGTCCTT+AGG + chr7_2:26436696-26436715 None:intergenic 35.0%
TTATGTTGCTGATAGAGTGA+TGG - chr7_2:26436711-26436730 Msa1054550:intron 35.0%
TATGTTGCTGATAGAGTGAT+GGG - chr7_2:26436712-26436731 Msa1054550:intron 35.0%
! TTTTTGTTCTCACCTCTTAC+TGG - chr7_2:26436762-26436781 Msa1054550:intron 35.0%
ATGCAGATATGCTAAAACCT+AGG + chr7_2:26436923-26436942 None:intergenic 35.0%
ACCCAAAACTGAAAAACCCT+TGG - chr7_2:26431882-26431901 Msa1054550:three_prime_UTR 40.0%
!! GCCAAGGGTTTTTCAGTTTT+GGG + chr7_2:26431886-26431905 None:intergenic 40.0%
!! TGCCAAGGGTTTTTCAGTTT+TGG + chr7_2:26431887-26431906 None:intergenic 40.0%
TTGCCTTCATTCATCTCTAC+CGG + chr7_2:26432314-26432333 None:intergenic 40.0%
TAGCACTCCAACACTTAAGT+CGG - chr7_2:26432373-26432392 Msa1054550:intron 40.0%
TTAAGTCGGTGTAGGAAATG+AGG - chr7_2:26432387-26432406 Msa1054550:intron 40.0%
CAGAGTGAGCATAATAACTC+TGG + chr7_2:26432584-26432603 None:intergenic 40.0%
CAGAGTTATTATGCTCACTC+TGG - chr7_2:26432582-26432601 Msa1054550:intron 40.0%
AGTTATTATGCTCACTCTGG+TGG - chr7_2:26432585-26432604 Msa1054550:intron 40.0%
! CATATTCTCAGGGATCGTTT+TGG - chr7_2:26432790-26432809 Msa1054550:intron 40.0%
GCATTATACAAAGCTAGGGA+CGG - chr7_2:26432815-26432834 Msa1054550:intron 40.0%
GATTATCTGTACGCTAGTAG+AGG - chr7_2:26432894-26432913 Msa1054550:intron 40.0%
GATAGTGAGAGGCAACTTAT+AGG - chr7_2:26433027-26433046 Msa1054550:intron 40.0%
CAAGAGACAACTCTCTATGA+GGG + chr7_2:26433125-26433144 None:intergenic 40.0%
CTCATAGAGAGTTGTCTCTT+GGG - chr7_2:26433124-26433143 Msa1054550:intron 40.0%
TCATAGAGAGTTGTCTCTTG+GGG - chr7_2:26433125-26433144 Msa1054550:intron 40.0%
AACTCCATCCAGATCATTAC+AGG + chr7_2:26433154-26433173 None:intergenic 40.0%
TCTGGATGGAGTTATAGCAT+TGG - chr7_2:26433161-26433180 Msa1054550:intron 40.0%
! TGGAGTTATAGCATTGGATC+TGG - chr7_2:26433167-26433186 Msa1054550:intron 40.0%
!! GTTTAAGCTTTAAGGTGACC+CGG - chr7_2:26433265-26433284 Msa1054550:intron 40.0%
!! TTTAAGCTTTAAGGTGACCC+GGG - chr7_2:26433266-26433285 Msa1054550:intron 40.0%
CAACATATTCGTATTGCGTC+TGG + chr7_2:26433397-26433416 None:intergenic 40.0%
! TTCTCTGGTTCCTATTACAC+TGG + chr7_2:26433627-26433646 None:intergenic 40.0%
! TTTTTGTCCGTTTCCTTGAG+AGG - chr7_2:26433703-26433722 Msa1054550:intron 40.0%
TTATTTGTTCAGCCAACCAC+GGG + chr7_2:26433875-26433894 None:intergenic 40.0%
GTTATTTGTTCAGCCAACCA+CGG + chr7_2:26433876-26433895 None:intergenic 40.0%
! TGGTTGGCTGAACAAATAAC+TGG - chr7_2:26433876-26433895 Msa1054550:intron 40.0%
TACATGTGCCAGTATTGTGT+CGG + chr7_2:26434082-26434101 None:intergenic 40.0%
!! CTCTTACAGTGTTGTTTAGC+TGG - chr7_2:26434389-26434408 Msa1054550:intron 40.0%
TAGCTGGAGAATGCAATTGT+TGG - chr7_2:26434405-26434424 Msa1054550:intron 40.0%
!!! TGCCATTTTTTATGGTCCAG+GGG - chr7_2:26434481-26434500 Msa1054550:intron 40.0%
ATCCCCTGGACCATAAAAAA+TGG + chr7_2:26434486-26434505 None:intergenic 40.0%
GGTGCTTCATCATTATCTGA+TGG - chr7_2:26434527-26434546 Msa1054550:intron 40.0%
! GATCATGCAACCTTTTCATC+TGG - chr7_2:26434723-26434742 Msa1054550:intron 40.0%
CAAATCCAACCCAGATGAAA+AGG + chr7_2:26434736-26434755 None:intergenic 40.0%
!! CTTTTCATCTGGGTTGGATT+TGG - chr7_2:26434734-26434753 Msa1054550:intron 40.0%
GTTAGTAGGATAGACCCAAA+AGG - chr7_2:26434849-26434868 Msa1054550:intron 40.0%
AAGTTTGTCAAACAAGCCAG+TGG + chr7_2:26434936-26434955 None:intergenic 40.0%
CACACACAAAAACAGAGCTT+AGG + chr7_2:26434968-26434987 None:intergenic 40.0%
!!! GTGTGCTGCTATTGTTGTTT+TGG - chr7_2:26435208-26435227 Msa1054550:intron 40.0%
TTGGCTGAACAAATAACTGG+AGG - chr7_2:26433879-26433898 Msa1054550:intron 40.0%
AGCAATAGCCCTCATATTGA+TGG - chr7_2:26435438-26435457 Msa1054550:intron 40.0%
CAAAGACGCCATCAATATGA+GGG + chr7_2:26435449-26435468 None:intergenic 40.0%
! GGCGTCTTTGGTTTCTAATA+CGG - chr7_2:26435459-26435478 Msa1054550:intron 40.0%
! GCACTTTCTTTTTATCCCTG+TGG + chr7_2:26435684-26435703 None:intergenic 40.0%
TGAAAAGACTGCAAAGGAAC+TGG - chr7_2:26436644-26436663 Msa1054550:intron 40.0%
TGCAAAGGAACTGGAATCAA+AGG - chr7_2:26436653-26436672 Msa1054550:intron 40.0%
TACTCCAAAAGACACTCCTA+AGG - chr7_2:26436677-26436696 Msa1054550:intron 40.0%
ATGTTGCTGATAGAGTGATG+GGG - chr7_2:26436713-26436732 Msa1054550:intron 40.0%
ATCCATCATTAGCCAGTAAG+AGG + chr7_2:26436777-26436796 None:intergenic 40.0%
! TATGGTTTTTCCACAGTCCT+AGG - chr7_2:26436903-26436922 Msa1054550:CDS 40.0%
TATGCTAAAACCTAGGACTG+TGG + chr7_2:26436916-26436935 None:intergenic 40.0%
ATATCAAGGTTACAGCCAGA+AGG + chr7_2:26436969-26436988 None:intergenic 40.0%
CACTGTTCTATGGTTGCCAA+GGG + chr7_2:26431901-26431920 None:intergenic 45.0%
TCACGAACACCACTGTTCTA+TGG + chr7_2:26431911-26431930 None:intergenic 45.0%
GAACAGTGGTGTTCGTGAAT+CGG - chr7_2:26431913-26431932 Msa1054550:three_prime_UTR 45.0%
GCGCTGTGGTTCTTCTATTA+AGG - chr7_2:26431992-26432011 Msa1054550:three_prime_UTR 45.0%
GACGTTGCGTTTGAAAATGG+AGG + chr7_2:26432037-26432056 None:intergenic 45.0%
TGTCCGGTAGAGATGAATGA+AGG - chr7_2:26432308-26432327 Msa1054550:intron 45.0%
GATGAATGAAGGCAACGTTG+CGG - chr7_2:26432319-26432338 Msa1054550:intron 45.0%
TCCAACACTTAAGTCGGTGT+AGG - chr7_2:26432379-26432398 Msa1054550:intron 45.0%
!! TCCTACACCGACTTAAGTGT+TGG + chr7_2:26432383-26432402 None:intergenic 45.0%
CTAACTGATCCCGTGAAATG+CGG - chr7_2:26432480-26432499 Msa1054550:intron 45.0%
CTATGTCCACGTGTTAGCAT+TGG - chr7_2:26432630-26432649 Msa1054550:intron 45.0%
! TCCACGTGTTAGCATTGGAT+TGG - chr7_2:26432635-26432654 Msa1054550:intron 45.0%
!! CATTGGATTGGCTTTCTAGC+CGG - chr7_2:26432647-26432666 Msa1054550:intron 45.0%
! TACAAAGCTAGGGACGGATT+TGG - chr7_2:26432821-26432840 Msa1054550:intron 45.0%
AGTGAGAGAACGATAGTGAG+AGG - chr7_2:26433016-26433035 Msa1054550:intron 45.0%
ATAATAACGGCGTGTTGGGT+CGG + chr7_2:26433068-26433087 None:intergenic 45.0%
CCAAGAGACAACTCTCTATG+AGG + chr7_2:26433126-26433145 None:intergenic 45.0%
CCTCATAGAGAGTTGTCTCT+TGG - chr7_2:26433123-26433142 Msa1054550:intron 45.0%
GACACCTGTAATGATCTGGA+TGG - chr7_2:26433147-26433166 Msa1054550:intron 45.0%
! AGCATTGGATCTGGACTAGA+CGG - chr7_2:26433176-26433195 Msa1054550:intron 45.0%
TCCTAAGTCCCACTAGATCA+TGG + chr7_2:26433221-26433240 None:intergenic 45.0%
AAACTTGGCAGACCATACCA+TGG + chr7_2:26433249-26433268 None:intergenic 45.0%
GTAAATGTTCTGCCCAATCC+AGG + chr7_2:26433298-26433317 None:intergenic 45.0%
GATTCTCTGCATCCCTTACA+TGG + chr7_2:26433784-26433803 None:intergenic 45.0%
TTGTACTCTGACTCAGACAC+CGG + chr7_2:26434164-26434183 None:intergenic 45.0%
CTGGAGAATGCAATTGTTGG+TGG - chr7_2:26434408-26434427 Msa1054550:intron 45.0%
AAGTGGAATGGTCTTCCCTT+GGG + chr7_2:26434660-26434679 None:intergenic 45.0%
! TGCAACCTTTTCATCTGGGT+TGG - chr7_2:26434728-26434747 Msa1054550:intron 45.0%
! TCATCTGGGTTGGATTTGGA+AGG - chr7_2:26434738-26434757 Msa1054550:intron 45.0%
! CATCTGGGTTGGATTTGGAA+GGG - chr7_2:26434739-26434758 Msa1054550:intron 45.0%
TGTCAAACAAGCCAGTGGAA+TGG + chr7_2:26434931-26434950 None:intergenic 45.0%
TTGTTCAGCCAACAACAGGA+AGG + chr7_2:26435266-26435285 None:intergenic 45.0%
CCAAAGACGCCATCAATATG+AGG + chr7_2:26435450-26435469 None:intergenic 45.0%
!! CCTCATATTGATGGCGTCTT+TGG - chr7_2:26435447-26435466 Msa1054550:intron 45.0%
! ATTTTTGTGGAACGGTCCAC+AGG - chr7_2:26435665-26435684 Msa1054550:intron 45.0%
! TTTTTGTGGAACGGTCCACA+GGG - chr7_2:26435666-26435685 Msa1054550:intron 45.0%
!!! TCGTCCTTAGGAGTGTCTTT+TGG + chr7_2:26436684-26436703 None:intergenic 45.0%
! CACCTCTTACTGGCTAATGA+TGG - chr7_2:26436772-26436791 Msa1054550:CDS 45.0%
CCACTGTTCTATGGTTGCCA+AGG + chr7_2:26431902-26431921 None:intergenic 50.0%
CCTTGGCAACCATAGAACAG+TGG - chr7_2:26431899-26431918 Msa1054550:three_prime_UTR 50.0%
! TGGAGTGCTAACGTGATTGC+AGG + chr7_2:26432363-26432382 None:intergenic 50.0%
! TGATAACGCGCCGCATTTCA+CGG + chr7_2:26432493-26432512 None:intergenic 50.0%
CGCGTTATCAGGAAGCCATT+GGG - chr7_2:26432503-26432522 Msa1054550:intron 50.0%
GCGTTATCAGGAAGCCATTG+GGG - chr7_2:26432504-26432523 Msa1054550:intron 50.0%
CGTTATCAGGAAGCCATTGG+GGG - chr7_2:26432505-26432524 Msa1054550:intron 50.0%
GCCAATCCAATGCTAACACG+TGG + chr7_2:26432639-26432658 None:intergenic 50.0%
! AAAGCTAGGGACGGATTTGG+TGG - chr7_2:26432824-26432843 Msa1054550:intron 50.0%
CTCCAGTGGAGAAGGAATCA+CGG + chr7_2:26432951-26432970 None:intergenic 50.0%
ATTCCTTCTCCACTGGAGGA+AGG - chr7_2:26432953-26432972 Msa1054550:intron 50.0%
TTCCTTCTCCACTGGAGGAA+GGG - chr7_2:26432954-26432973 Msa1054550:intron 50.0%
TAATAACGGCGTGTTGGGTC+GGG + chr7_2:26433067-26433086 None:intergenic 50.0%
TGGGGACACCTGTAATGATC+TGG - chr7_2:26433143-26433162 Msa1054550:intron 50.0%
GCCATGATCTAGTGGGACTT+AGG - chr7_2:26433217-26433236 Msa1054550:intron 50.0%
CTTAGGACGTGTCCATGGTA+TGG - chr7_2:26433234-26433253 Msa1054550:intron 50.0%
TGTTCTGCCCAATCCAGGTT+TGG + chr7_2:26433293-26433312 None:intergenic 50.0%
!! ATGTGTCGGTGTCGTGACAT+TGG - chr7_2:26433463-26433482 Msa1054550:intron 50.0%
TGTTTACAGGATCCTTCCCG+TGG - chr7_2:26433856-26433875 Msa1054550:intron 50.0%
! TGCCAGTATTGTGTCGGTGT+CGG + chr7_2:26434076-26434095 None:intergenic 50.0%
CTACATGTCAGTGTCGTGTC+CGG - chr7_2:26434142-26434161 Msa1054550:intron 50.0%
CAAGTGGAATGGTCTTCCCT+TGG + chr7_2:26434661-26434680 None:intergenic 50.0%
CAGTGGAATGGTCTTCCCTA+GGG + chr7_2:26434919-26434938 None:intergenic 50.0%
TGTAACCATGTAGGGGATGC+AGG - chr7_2:26435165-26435184 Msa1054550:intron 50.0%
GTAACCATGTAGGGGATGCA+GGG - chr7_2:26435166-26435185 Msa1054550:intron 50.0%
TCAGGGATCCTTCCTGTTGT+TGG - chr7_2:26435255-26435274 Msa1054550:intron 50.0%
TAGCTGCAGACTGCAGTTGT+TGG - chr7_2:26435728-26435747 Msa1054550:intron 50.0%
! TTGCTGATAGAGTGATGGGG+TGG - chr7_2:26436716-26436735 Msa1054550:intron 50.0%
TCGTGAATCGGCGTGTGAAG+AGG - chr7_2:26431925-26431944 Msa1054550:three_prime_UTR 55.0%
GGCGTGTGAAGAGGAGTGAT+GGG - chr7_2:26431934-26431953 Msa1054550:three_prime_UTR 55.0%
CACAGCGCTAACACCAGCAA+CGG + chr7_2:26431980-26431999 None:intergenic 55.0%
GAATGAAGGCAACGTTGCGG+TGG - chr7_2:26432322-26432341 Msa1054550:intron 55.0%
GATAACGCGCCGCATTTCAC+GGG + chr7_2:26432492-26432511 None:intergenic 55.0%
GTGAAATGCGGCGCGTTATC+AGG - chr7_2:26432492-26432511 Msa1054550:intron 55.0%
GCGCGTTATCAGGAAGCCAT+TGG - chr7_2:26432502-26432521 Msa1054550:intron 55.0%
TGCATCCTACACCGTACACG+TGG + chr7_2:26432531-26432550 None:intergenic 55.0%
CGTGTACGGTGTAGGATGCA+CGG - chr7_2:26432531-26432550 Msa1054550:intron 55.0%
GTGTACGGTGTAGGATGCAC+GGG - chr7_2:26432532-26432551 Msa1054550:intron 55.0%
TGTACGGTGTAGGATGCACG+GGG - chr7_2:26432533-26432552 Msa1054550:intron 55.0%
! CTGGTGGCGTGTCTTTGATC+CGG - chr7_2:26432601-26432620 Msa1054550:intron 55.0%
CACGTGGACATAGAGTCCAC+CGG + chr7_2:26432623-26432642 None:intergenic 55.0%
!! GGAATCACGGTGGACTACAG+CGG + chr7_2:26432938-26432957 None:intergenic 55.0%
CAGTGGAGAAGGAATCACGG+TGG + chr7_2:26432948-26432967 None:intergenic 55.0%
CACCGTGATTCCTTCTCCAC+TGG - chr7_2:26432946-26432965 Msa1054550:intron 55.0%
CGTGATTCCTTCTCCACTGG+AGG - chr7_2:26432949-26432968 Msa1054550:intron 55.0%
GTAAACCACCCTTCCTCCAG+TGG + chr7_2:26432965-26432984 None:intergenic 55.0%
CATGGCGCGGATCATCAATC+TGG + chr7_2:26433203-26433222 None:intergenic 55.0%
TGATCCGCGCCATGATCTAG+TGG - chr7_2:26433209-26433228 Msa1054550:intron 55.0%
GATCCGCGCCATGATCTAGT+GGG - chr7_2:26433210-26433229 Msa1054550:intron 55.0%
AGTCCCACTAGATCATGGCG+CGG + chr7_2:26433216-26433235 None:intergenic 55.0%
TGGGACTTAGGACGTGTCCA+TGG - chr7_2:26433229-26433248 Msa1054550:intron 55.0%
TACAGGATCCTTCCCGTGGT+TGG - chr7_2:26433860-26433879 Msa1054550:intron 55.0%
TTGTTCAGCCAACCACGGGA+AGG + chr7_2:26433871-26433890 None:intergenic 55.0%
GTCCGACACCGACACAATAC+TGG - chr7_2:26434071-26434090 Msa1054550:intron 55.0%
CCAGTGGAATGGTCTTCCCT+AGG + chr7_2:26434920-26434939 None:intergenic 55.0%
CCTAGGGAAGACCATTCCAC+TGG - chr7_2:26434917-26434936 Msa1054550:intron 55.0%
GATACCCTGCATCCCCTACA+TGG + chr7_2:26435173-26435192 None:intergenic 55.0%
CTGCAGACTGCAGTTGTTGG+TGG - chr7_2:26435731-26435750 Msa1054550:intron 55.0%
TGCTGAGAGTGAGAGCCTTC+TGG - chr7_2:26436951-26436970 Msa1054550:five_prime_UTR 55.0%
CGGCGTGTGAAGAGGAGTGA+TGG - chr7_2:26431933-26431952 Msa1054550:three_prime_UTR 60.0%
! CGTTGCTGGTGTTAGCGCTG+TGG - chr7_2:26431978-26431997 Msa1054550:three_prime_UTR 60.0%
CAACGTTGCGGTGGCGAGAA+CGG - chr7_2:26432331-26432350 Msa1054550:intron 60.0%
GTACGGTGTAGGATGCACGG+GGG - chr7_2:26432534-26432553 Msa1054550:intron 60.0%
! TGCACGGGGGCATGCTTTAG+TGG - chr7_2:26432547-26432566 Msa1054550:intron 60.0%
! GCACGGGGGCATGCTTTAGT+GGG - chr7_2:26432548-26432567 Msa1054550:intron 60.0%
! CACGGGGGCATGCTTTAGTG+GGG - chr7_2:26432549-26432568 Msa1054550:intron 60.0%
GTGGCGTGTCTTTGATCCGG+TGG - chr7_2:26432604-26432623 Msa1054550:intron 60.0%
CACCCTTCCTCCAGTGGAGA+AGG + chr7_2:26432959-26432978 None:intergenic 60.0%
CTTCTCCACTGGAGGAAGGG+TGG - chr7_2:26432957-26432976 Msa1054550:intron 60.0%
ACCCGGGTCCAAACCTGGAT+TGG - chr7_2:26433282-26433301 Msa1054550:intron 60.0%
CCCAATCCAGGTTTGGACCC+GGG + chr7_2:26433286-26433305 None:intergenic 60.0%
CCCGGGTCCAAACCTGGATT+GGG - chr7_2:26433283-26433302 Msa1054550:intron 60.0%
GCCCAATCCAGGTTTGGACC+CGG + chr7_2:26433287-26433306 None:intergenic 60.0%
GTTGCGGTGGCGAGAACGGA+GGG - chr7_2:26432335-26432354 Msa1054550:intron 65.0%
GCCATTGGGGGCCACGTGTA+CGG - chr7_2:26432517-26432536 Msa1054550:intron 65.0%
ACCGTACACGTGGCCCCCAA+TGG + chr7_2:26432521-26432540 None:intergenic 65.0%
! GGGGGCATGCTTTAGTGGGG+TGG - chr7_2:26432552-26432571 Msa1054550:intron 65.0%
AGGTGACCCGGGTCCAAACC+TGG - chr7_2:26433277-26433296 Msa1054550:intron 65.0%
CGTTGCGGTGGCGAGAACGG+AGG - chr7_2:26432334-26432353 Msa1054550:intron 70.0%
GGGGGCCACGTGTACGGTGT+AGG - chr7_2:26432523-26432542 Msa1054550:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 26431829 26437045 26431829 ID=Msa1054550;Name=Msa1054550
chr7_2 mRNA 26431829 26437045 26431829 ID=Msa1054550-mRNA-1;Parent=Msa1054550;Name=Msa1054550-mRNA-1;_AED=0.00;_eAED=0.00;_QI=123|1|1|1|1|1|2|338|73
chr7_2 exon 26431829 26432236 26431829 ID=Msa1054550-mRNA-1:exon:5665;Parent=Msa1054550-mRNA-1
chr7_2 exon 26436771 26437045 26436771 ID=Msa1054550-mRNA-1:exon:5664;Parent=Msa1054550-mRNA-1
chr7_2 five_prime_UTR 26436923 26437045 26436923 ID=Msa1054550-mRNA-1:five_prime_utr;Parent=Msa1054550-mRNA-1
chr7_2 CDS 26436771 26436922 26436771 ID=Msa1054550-mRNA-1:cds;Parent=Msa1054550-mRNA-1
chr7_2 CDS 26432167 26432236 26432167 ID=Msa1054550-mRNA-1:cds;Parent=Msa1054550-mRNA-1
chr7_2 three_prime_UTR 26431829 26432166 26431829 ID=Msa1054550-mRNA-1:three_prime_utr;Parent=Msa1054550-mRNA-1
Gene Sequence

>Msa1054550

ATGGGTTTGACGAATTTCATAATAACCGTTGCTGGTGTTAGCGCTGTGGTTCTTCTATTAAGGAGTGATGTAAAGCAATCTGCCTCCATTTTCAAACGCAACGTCAAACAAATTCGTCATTGGCTTGAAGAAGAAACCGCTAATTCTTCAAAGAAAATTGAAAAGACTGCAAAGGAACTGGAATCAAAGGTTACTCCAAAAGACACTCCTAAGGACGACTAA
Protein sequence

>Msa1054550

MGLTNFIITVAGVSAVVLLLRSDVKQSASIFKRNVKQIRHWLEEETANSSKKIEKTAKELESKVTPKDTPKDD*