AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1256470


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1256470 MtrunA17_Chr4g0053811 98.750 80 1 0 1 80 1 80 1.76e-54 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1256470 AT2G23090.1 81.818 77 14 0 1 77 1 77 1.45e-43 135

Find 45 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTCCGATAAAGAAATT+AGG 0.147345 8_2:+56479148 Msa1256470:five_prime_UTR
TGCTTCCCACTTCATGCTTC+TGG 0.237957 8_2:-56480978 None:intergenic
GTCAAAGTGTAACTGTTTAA+TGG 0.239196 8_2:+56481149 Msa1256470:three_prime_UTR
CCAAATCACAGTTGCTTCAT+AGG 0.255940 8_2:-56481310 None:intergenic
CAAAACCCTAATTTCTTTAT+CGG 0.268738 8_2:-56479154 None:intergenic
GATACATCAATTTATATATT+CGG 0.281395 8_2:-56479076 None:intergenic
ATACATTATATCATATTATA+TGG 0.295545 8_2:+56481006 Msa1256470:three_prime_UTR
CAAGTGAAGAGATCAGATTT+TGG 0.307415 8_2:-56480939 None:intergenic
ATCCTATGTGTTTGTCTTGT+TGG 0.313725 8_2:+56481056 Msa1256470:three_prime_UTR
ATGTGTTTGTCTTGTTGGTT+AGG 0.319757 8_2:+56481061 Msa1256470:three_prime_UTR
CTCCGAAAGCAACCTAAAAT+TGG 0.328459 8_2:+56481253 Msa1256470:three_prime_UTR
TTCTTCCGATAAAGAAATTA+GGG 0.339605 8_2:+56479149 Msa1256470:five_prime_UTR
AAAATTGGTAAATTATTCAT+TGG 0.362826 8_2:+56481268 Msa1256470:three_prime_UTR
TTCATGCTTCTGGTTTAAGA+TGG 0.414107 8_2:-56480968 None:intergenic
TTGAGGGTCTCTCTCAGCCA+TGG 0.415376 8_2:+56479174 Msa1256470:exon
CAACAGTTTCTCACACTTGA+GGG 0.433341 8_2:-56481116 None:intergenic
TGTGTTTGTCTTGTTGGTTA+GGG 0.470163 8_2:+56481062 Msa1256470:three_prime_UTR
ATTGGTAAATTATTCATTGG+TGG 0.472091 8_2:+56481271 Msa1256470:three_prime_UTR
CCTATGAAGCAACTGTGATT+TGG 0.475024 8_2:+56481310 Msa1256470:three_prime_UTR
TGAGGGTCTCTCTCAGCCAT+GGG 0.480356 8_2:+56479175 Msa1256470:exon
TGTGCGCAAAACGAAAATAA+TGG 0.480751 8_2:-56479116 None:intergenic
TCATGCTTCTGGTTTAAGAT+GGG 0.486977 8_2:-56480967 None:intergenic
AGCAACTGTGATTTGGTGTA+TGG 0.488541 8_2:+56481317 Msa1256470:three_prime_UTR
CTCGAGAAGCAGAAGAATGC+TGG 0.496068 8_2:+56479241 Msa1256470:CDS
CTTAAACCAGAAGCATGAAG+TGG 0.532280 8_2:+56480972 Msa1256470:exon
CAGCATTCTTCTGCTTCTCG+AGG 0.532542 8_2:-56479240 None:intergenic
TCTCTCTCAGCCATGGGTGG+AGG 0.540024 8_2:+56479181 Msa1256470:exon
CTTGCACTTCACTTCTGATG+TGG 0.540448 8_2:-56480895 None:intergenic
TCAACAGTTTCTCACACTTG+AGG 0.541675 8_2:-56481117 None:intergenic
TTGACCGTTACCTCCACCCA+TGG 0.542711 8_2:-56479191 None:intergenic
TCAGCCATGGGTGGAGGTAA+CGG 0.548723 8_2:+56479187 Msa1256470:exon
GGGTCTCTCTCAGCCATGGG+TGG 0.552601 8_2:+56479178 Msa1256470:exon
ATCTTATACCAACGTTAGCA+TGG 0.554816 8_2:-56481352 None:intergenic
CATGCTTCTGGTTTAAGATG+GGG 0.555513 8_2:-56480966 None:intergenic
GGTAAATTATTCATTGGTGG+TGG 0.564852 8_2:+56481274 Msa1256470:three_prime_UTR
AAGCAGAAGAATGCTGGCAA+AGG 0.595797 8_2:+56479247 Msa1256470:CDS
AAGCTAAGATGGCTCGCGAG+AGG 0.616608 8_2:+56479215 Msa1256470:CDS
GTTGGTTAGGGAAAGACACA+AGG 0.618351 8_2:+56481074 Msa1256470:three_prime_UTR
TTAAACCAGAAGCATGAAGT+GGG 0.633169 8_2:+56480973 Msa1256470:exon
CACATCAGAAGTGAAGTGCA+AGG 0.659147 8_2:+56480896 Msa1256470:CDS
GAAGTGCAAGGAGCATGCTG+AGG 0.671964 8_2:+56480908 Msa1256470:CDS
AACCAACAAGACAAACACAT+AGG 0.675032 8_2:-56481058 None:intergenic
TTGGTTAGGGAAAGACACAA+GGG 0.689879 8_2:+56481075 Msa1256470:three_prime_UTR
ACTGTTAGCCATGCTAACGT+TGG 0.709511 8_2:+56481344 Msa1256470:three_prime_UTR
TGGTTAGGGAAAGACACAAG+GGG 0.716480 8_2:+56481076 Msa1256470:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTGTTTCAA+AGG + chr8_2:56479552-56479571 Msa1256470:intron 10.0%
!!! TTTTTTTTTTTTGTTTCAAA+GGG + chr8_2:56479553-56479572 Msa1256470:intron 10.0%
!!! CTATGTTTTATAAATTTTTA+AGG - chr8_2:56480251-56480270 None:intergenic 10.0%
!! TATAAAATTTATCATTACAA+CGG + chr8_2:56480756-56480775 Msa1256470:intron 10.0%
!! ATACATTATATCATATTATA+TGG + chr8_2:56481006-56481025 Msa1256470:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGTTTCAA+AGG + chr8_2:56479552-56479571 Msa1256470:intron 10.0%
!!! TTTTTTTTTTTTGTTTCAAA+GGG + chr8_2:56479553-56479572 Msa1256470:intron 10.0%
!!! CTATGTTTTATAAATTTTTA+AGG - chr8_2:56480251-56480270 None:intergenic 10.0%
!! TATAAAATTTATCATTACAA+CGG + chr8_2:56480756-56480775 Msa1256470:intron 10.0%
!! ATACATTATATCATATTATA+TGG + chr8_2:56481006-56481025 Msa1256470:three_prime_UTR 10.0%
!! GATACATCAATTTATATATT+CGG - chr8_2:56479079-56479098 None:intergenic 15.0%
!! AAACAAATTGATGAAATTAT+TGG - chr8_2:56479531-56479550 None:intergenic 15.0%
!!! AATGAAAATTTACTTTTCAA+GGG - chr8_2:56479740-56479759 None:intergenic 15.0%
!! ATGAAATTGAATAATATCAA+TGG + chr8_2:56480050-56480069 Msa1256470:intron 15.0%
!! TAATATTGTGTTAAAAATCA+TGG + chr8_2:56481182-56481201 Msa1256470:three_prime_UTR 15.0%
!!! ATGAATAATTTACCAATTTT+AGG - chr8_2:56481268-56481287 None:intergenic 15.0%
!! AAAATTGGTAAATTATTCAT+TGG + chr8_2:56481268-56481287 Msa1256470:three_prime_UTR 15.0%
!! GATACATCAATTTATATATT+CGG - chr8_2:56479079-56479098 None:intergenic 15.0%
!! AAACAAATTGATGAAATTAT+TGG - chr8_2:56479531-56479550 None:intergenic 15.0%
!!! AATGAAAATTTACTTTTCAA+GGG - chr8_2:56479740-56479759 None:intergenic 15.0%
!! ATGAAATTGAATAATATCAA+TGG + chr8_2:56480050-56480069 Msa1256470:intron 15.0%
!! TAATATTGTGTTAAAAATCA+TGG + chr8_2:56481182-56481201 Msa1256470:three_prime_UTR 15.0%
!!! ATGAATAATTTACCAATTTT+AGG - chr8_2:56481268-56481287 None:intergenic 15.0%
!! AAAATTGGTAAATTATTCAT+TGG + chr8_2:56481268-56481287 Msa1256470:three_prime_UTR 15.0%
!!! TGATTTTTTCGTTGAAAAAT+TGG + chr8_2:56479311-56479330 Msa1256470:intron 20.0%
!!! GATTTTTTCGTTGAAAAATT+GGG + chr8_2:56479312-56479331 Msa1256470:intron 20.0%
!!! AATTTTTGTTTTGTATATGC+AGG + chr8_2:56479384-56479403 Msa1256470:intron 20.0%
!!! GATTATTAACAGAAGTTTTA+AGG + chr8_2:56479698-56479717 Msa1256470:intron 20.0%
!!! CAATGAAAATTTACTTTTCA+AGG - chr8_2:56479741-56479760 None:intergenic 20.0%
!!! CTTGAAAAGTAAATTTTCAT+TGG + chr8_2:56479739-56479758 Msa1256470:intron 20.0%
!!! TTTTCATTGGTTAAACATTT+TGG + chr8_2:56479752-56479771 Msa1256470:intron 20.0%
!!! TTTCATTGGTTAAACATTTT+GGG + chr8_2:56479753-56479772 Msa1256470:intron 20.0%
!! AATATCAATGGTACTTAATT+TGG + chr8_2:56480062-56480081 Msa1256470:intron 20.0%
!! TTGAATATTAAACCCAAAAA+TGG + chr8_2:56480135-56480154 Msa1256470:intron 20.0%
!!! ACACAAAATTATCCATTTTT+GGG - chr8_2:56480150-56480169 None:intergenic 20.0%
!! CAATAATGAATACTAATGTA+AGG - chr8_2:56480294-56480313 None:intergenic 20.0%
!!! CATATTGAAGAAAACTTTTT+GGG - chr8_2:56480584-56480603 None:intergenic 20.0%
!!! ACATATTGAAGAAAACTTTT+TGG - chr8_2:56480585-56480604 None:intergenic 20.0%
!!! CATATTGAATGAAACTTTTT+GGG - chr8_2:56480685-56480704 None:intergenic 20.0%
!!! ACATATTGAATGAAACTTTT+TGG - chr8_2:56480686-56480705 None:intergenic 20.0%
!! ACAACATTATAATCAGTAAA+GGG - chr8_2:56480829-56480848 None:intergenic 20.0%
!!! TGATTTTTTCGTTGAAAAAT+TGG + chr8_2:56479311-56479330 Msa1256470:intron 20.0%
!!! GATTTTTTCGTTGAAAAATT+GGG + chr8_2:56479312-56479331 Msa1256470:intron 20.0%
!!! AATTTTTGTTTTGTATATGC+AGG + chr8_2:56479384-56479403 Msa1256470:intron 20.0%
!!! GATTATTAACAGAAGTTTTA+AGG + chr8_2:56479698-56479717 Msa1256470:intron 20.0%
!!! CAATGAAAATTTACTTTTCA+AGG - chr8_2:56479741-56479760 None:intergenic 20.0%
!!! CTTGAAAAGTAAATTTTCAT+TGG + chr8_2:56479739-56479758 Msa1256470:intron 20.0%
!!! TTTTCATTGGTTAAACATTT+TGG + chr8_2:56479752-56479771 Msa1256470:intron 20.0%
!!! TTTCATTGGTTAAACATTTT+GGG + chr8_2:56479753-56479772 Msa1256470:intron 20.0%
!! AATATCAATGGTACTTAATT+TGG + chr8_2:56480062-56480081 Msa1256470:intron 20.0%
!! TTGAATATTAAACCCAAAAA+TGG + chr8_2:56480135-56480154 Msa1256470:intron 20.0%
!!! ACACAAAATTATCCATTTTT+GGG - chr8_2:56480150-56480169 None:intergenic 20.0%
!! CAATAATGAATACTAATGTA+AGG - chr8_2:56480294-56480313 None:intergenic 20.0%
!!! CATATTGAAGAAAACTTTTT+GGG - chr8_2:56480584-56480603 None:intergenic 20.0%
!!! ACATATTGAAGAAAACTTTT+TGG - chr8_2:56480585-56480604 None:intergenic 20.0%
!!! CATATTGAATGAAACTTTTT+GGG - chr8_2:56480685-56480704 None:intergenic 20.0%
!!! ACATATTGAATGAAACTTTT+TGG - chr8_2:56480686-56480705 None:intergenic 20.0%
!! ACAACATTATAATCAGTAAA+GGG - chr8_2:56480829-56480848 None:intergenic 20.0%
! TTCTTCCGATAAAGAAATTA+GGG + chr8_2:56479149-56479168 Msa1256470:five_prime_UTR 25.0%
! CAAAACCCTAATTTCTTTAT+CGG - chr8_2:56479157-56479176 None:intergenic 25.0%
!! ATAAAGAAATTAGGGTTTTG+AGG + chr8_2:56479157-56479176 Msa1256470:five_prime_UTR 25.0%
!!! TAAAGAAATTAGGGTTTTGA+GGG + chr8_2:56479158-56479177 Msa1256470:five_prime_UTR 25.0%
! GACAATTCCATTAGAAATTA+GGG + chr8_2:56479286-56479305 Msa1256470:intron 25.0%
! AATCAAACCCTAATTTCTAA+TGG - chr8_2:56479296-56479315 None:intergenic 25.0%
! TTAATTATACGTGTTAGATC+TGG + chr8_2:56479350-56479369 Msa1256470:intron 25.0%
!!! CTTTTTTGTTTTTTTCAAGC+TGG - chr8_2:56479413-56479432 None:intergenic 25.0%
!! TTATAGATCTGAAGTATATG+TGG + chr8_2:56479464-56479483 Msa1256470:intron 25.0%
! CAGAACTATGATTGTAAAAT+TGG + chr8_2:56479661-56479680 Msa1256470:intron 25.0%
!!! ATTAACAGAAGTTTTAAGGA+TGG + chr8_2:56479702-56479721 Msa1256470:intron 25.0%
!!! TATTTTGATTCCATGATGTT+TGG + chr8_2:56479791-56479810 Msa1256470:intron 25.0%
! TACTTGAAATTCGTTATGTT+AGG + chr8_2:56479867-56479886 Msa1256470:intron 25.0%
! ACTTGAAATTCGTTATGTTA+GGG + chr8_2:56479868-56479887 Msa1256470:intron 25.0%
! GAACAAGTTAAAGAATTTGA+GGG + chr8_2:56479952-56479971 Msa1256470:intron 25.0%
!! CACACAAAATTATCCATTTT+TGG - chr8_2:56480151-56480170 None:intergenic 25.0%
!! CAAAAATGGATAATTTTGTG+TGG + chr8_2:56480149-56480168 Msa1256470:intron 25.0%
! TTAAGAAATTCTGACTTCTT+TGG + chr8_2:56480187-56480206 Msa1256470:intron 25.0%
! TTCCCAAACATATTGATATT+TGG + chr8_2:56480320-56480339 Msa1256470:intron 25.0%
! TGCCAAATATCAATATGTTT+GGG - chr8_2:56480325-56480344 None:intergenic 25.0%
! AAGTTTCATTCAATATGTCT+TGG + chr8_2:56480688-56480707 Msa1256470:intron 25.0%
!! TTATCATTACAACGGTTTTA+AGG + chr8_2:56480764-56480783 Msa1256470:intron 25.0%
! CACAACATTATAATCAGTAA+AGG - chr8_2:56480830-56480849 None:intergenic 25.0%
! ATTGGTAAATTATTCATTGG+TGG + chr8_2:56481271-56481290 Msa1256470:three_prime_UTR 25.0%
! TTCTTCCGATAAAGAAATTA+GGG + chr8_2:56479149-56479168 Msa1256470:five_prime_UTR 25.0%
! CAAAACCCTAATTTCTTTAT+CGG - chr8_2:56479157-56479176 None:intergenic 25.0%
!! ATAAAGAAATTAGGGTTTTG+AGG + chr8_2:56479157-56479176 Msa1256470:five_prime_UTR 25.0%
!!! TAAAGAAATTAGGGTTTTGA+GGG + chr8_2:56479158-56479177 Msa1256470:five_prime_UTR 25.0%
! GACAATTCCATTAGAAATTA+GGG + chr8_2:56479286-56479305 Msa1256470:intron 25.0%
! AATCAAACCCTAATTTCTAA+TGG - chr8_2:56479296-56479315 None:intergenic 25.0%
! TTAATTATACGTGTTAGATC+TGG + chr8_2:56479350-56479369 Msa1256470:intron 25.0%
!!! CTTTTTTGTTTTTTTCAAGC+TGG - chr8_2:56479413-56479432 None:intergenic 25.0%
!! TTATAGATCTGAAGTATATG+TGG + chr8_2:56479464-56479483 Msa1256470:intron 25.0%
! CAGAACTATGATTGTAAAAT+TGG + chr8_2:56479661-56479680 Msa1256470:intron 25.0%
!!! ATTAACAGAAGTTTTAAGGA+TGG + chr8_2:56479702-56479721 Msa1256470:intron 25.0%
!!! TATTTTGATTCCATGATGTT+TGG + chr8_2:56479791-56479810 Msa1256470:intron 25.0%
! TACTTGAAATTCGTTATGTT+AGG + chr8_2:56479867-56479886 Msa1256470:intron 25.0%
! ACTTGAAATTCGTTATGTTA+GGG + chr8_2:56479868-56479887 Msa1256470:intron 25.0%
! GAACAAGTTAAAGAATTTGA+GGG + chr8_2:56479952-56479971 Msa1256470:intron 25.0%
!! CACACAAAATTATCCATTTT+TGG - chr8_2:56480151-56480170 None:intergenic 25.0%
!! CAAAAATGGATAATTTTGTG+TGG + chr8_2:56480149-56480168 Msa1256470:intron 25.0%
! TTAAGAAATTCTGACTTCTT+TGG + chr8_2:56480187-56480206 Msa1256470:intron 25.0%
! TTCCCAAACATATTGATATT+TGG + chr8_2:56480320-56480339 Msa1256470:intron 25.0%
! TGCCAAATATCAATATGTTT+GGG - chr8_2:56480325-56480344 None:intergenic 25.0%
! AAGTTTCATTCAATATGTCT+TGG + chr8_2:56480688-56480707 Msa1256470:intron 25.0%
!! TTATCATTACAACGGTTTTA+AGG + chr8_2:56480764-56480783 Msa1256470:intron 25.0%
! CACAACATTATAATCAGTAA+AGG - chr8_2:56480830-56480849 None:intergenic 25.0%
! ATTGGTAAATTATTCATTGG+TGG + chr8_2:56481271-56481290 Msa1256470:three_prime_UTR 25.0%
CTTCTTCCGATAAAGAAATT+AGG + chr8_2:56479148-56479167 Msa1256470:five_prime_UTR 30.0%
ATTTCTAATGGAATTGTCGA+GGG - chr8_2:56479284-56479303 None:intergenic 30.0%
AATTTCTAATGGAATTGTCG+AGG - chr8_2:56479285-56479304 None:intergenic 30.0%
CGACAATTCCATTAGAAATT+AGG + chr8_2:56479285-56479304 Msa1256470:intron 30.0%
AAAGCAATCTTGATTATACC+TGG - chr8_2:56479446-56479465 None:intergenic 30.0%
! TTGGCTTATGAGCATTTTAA+CGG + chr8_2:56479810-56479829 Msa1256470:intron 30.0%
ATAAAGGGAAAGGAATCTAA+TGG + chr8_2:56479910-56479929 Msa1256470:intron 30.0%
TAAAGGGAAAGGAATCTAAT+GGG + chr8_2:56479911-56479930 Msa1256470:intron 30.0%
CGAACAAGTTAAAGAATTTG+AGG + chr8_2:56479951-56479970 Msa1256470:intron 30.0%
GATCAAACTGCAAAAATGTA+TGG - chr8_2:56480002-56480021 None:intergenic 30.0%
CTATTGTTAAGTTTCTACAG+AGG - chr8_2:56480111-56480130 None:intergenic 30.0%
GTGCCAAATATCAATATGTT+TGG - chr8_2:56480326-56480345 None:intergenic 30.0%
ACATATTGATATTTGGCACT+TGG + chr8_2:56480327-56480346 Msa1256470:intron 30.0%
TGTAAGTTCATTACGAGTAT+TGG + chr8_2:56480429-56480448 Msa1256470:intron 30.0%
TAGTCATTGAATATGCACAT+AGG + chr8_2:56480723-56480742 Msa1256470:intron 30.0%
! AAGTGAAGAGATCAGATTTT+GGG - chr8_2:56480941-56480960 None:intergenic 30.0%
GTCAAAGTGTAACTGTTTAA+TGG + chr8_2:56481149-56481168 Msa1256470:three_prime_UTR 30.0%
!!! TACCAATTTTAGGTTGCTTT+CGG - chr8_2:56481258-56481277 None:intergenic 30.0%
CTTCTTCCGATAAAGAAATT+AGG + chr8_2:56479148-56479167 Msa1256470:five_prime_UTR 30.0%
ATTTCTAATGGAATTGTCGA+GGG - chr8_2:56479284-56479303 None:intergenic 30.0%
AATTTCTAATGGAATTGTCG+AGG - chr8_2:56479285-56479304 None:intergenic 30.0%
CGACAATTCCATTAGAAATT+AGG + chr8_2:56479285-56479304 Msa1256470:intron 30.0%
AAAGCAATCTTGATTATACC+TGG - chr8_2:56479446-56479465 None:intergenic 30.0%
! TTGGCTTATGAGCATTTTAA+CGG + chr8_2:56479810-56479829 Msa1256470:intron 30.0%
ATAAAGGGAAAGGAATCTAA+TGG + chr8_2:56479910-56479929 Msa1256470:intron 30.0%
TAAAGGGAAAGGAATCTAAT+GGG + chr8_2:56479911-56479930 Msa1256470:intron 30.0%
CGAACAAGTTAAAGAATTTG+AGG + chr8_2:56479951-56479970 Msa1256470:intron 30.0%
GATCAAACTGCAAAAATGTA+TGG - chr8_2:56480002-56480021 None:intergenic 30.0%
CTATTGTTAAGTTTCTACAG+AGG - chr8_2:56480111-56480130 None:intergenic 30.0%
GTGCCAAATATCAATATGTT+TGG - chr8_2:56480326-56480345 None:intergenic 30.0%
ACATATTGATATTTGGCACT+TGG + chr8_2:56480327-56480346 Msa1256470:intron 30.0%
TGTAAGTTCATTACGAGTAT+TGG + chr8_2:56480429-56480448 Msa1256470:intron 30.0%
TAGTCATTGAATATGCACAT+AGG + chr8_2:56480723-56480742 Msa1256470:intron 30.0%
! AAGTGAAGAGATCAGATTTT+GGG - chr8_2:56480941-56480960 None:intergenic 30.0%
GTCAAAGTGTAACTGTTTAA+TGG + chr8_2:56481149-56481168 Msa1256470:three_prime_UTR 30.0%
!!! TACCAATTTTAGGTTGCTTT+CGG - chr8_2:56481258-56481277 None:intergenic 30.0%
TGTGCGCAAAACGAAAATAA+TGG - chr8_2:56479119-56479138 None:intergenic 35.0%
TAACGGTCAAAAAGCTAAGA+TGG + chr8_2:56479204-56479223 Msa1256470:CDS 35.0%
CAAAAAAGCTATGTCAATCC+AGG + chr8_2:56479425-56479444 Msa1256470:CDS 35.0%
!! ACAATCATAGTTCTGAACAG+AGG - chr8_2:56479656-56479675 None:intergenic 35.0%
AATTCGTTATGTTAGGGAGT+TGG + chr8_2:56479874-56479893 Msa1256470:intron 35.0%
ATTCGTTATGTTAGGGAGTT+GGG + chr8_2:56479875-56479894 Msa1256470:intron 35.0%
! TGGGTTGGGAGAAAATATAA+AGG + chr8_2:56479894-56479913 Msa1256470:intron 35.0%
GGGTTGGGAGAAAATATAAA+GGG + chr8_2:56479895-56479914 Msa1256470:intron 35.0%
GGGAGAAAATATAAAGGGAA+AGG + chr8_2:56479900-56479919 Msa1256470:intron 35.0%
! TAAGTTTCTACAGAGGCTTT+TGG - chr8_2:56480104-56480123 None:intergenic 35.0%
GAAATTCTGACTTCTTTGGT+TGG + chr8_2:56480191-56480210 Msa1256470:intron 35.0%
CACAGTATGTAAGTTCCTTT+CGG + chr8_2:56480380-56480399 Msa1256470:intron 35.0%
! GTTTGACAAGTTCTGTTTTG+AGG + chr8_2:56480506-56480525 Msa1256470:intron 35.0%
! TGCATTGCTGTAGTATTGAA+TGG + chr8_2:56480801-56480820 Msa1256470:intron 35.0%
! CAAGTGAAGAGATCAGATTT+TGG - chr8_2:56480942-56480961 None:intergenic 35.0%
!! TCATGCTTCTGGTTTAAGAT+GGG - chr8_2:56480970-56480989 None:intergenic 35.0%
!! TTCATGCTTCTGGTTTAAGA+TGG - chr8_2:56480971-56480990 None:intergenic 35.0%
! TTAAACCAGAAGCATGAAGT+GGG + chr8_2:56480973-56480992 Msa1256470:exon 35.0%
ATCCTATGTGTTTGTCTTGT+TGG + chr8_2:56481056-56481075 Msa1256470:three_prime_UTR 35.0%
AACCAACAAGACAAACACAT+AGG - chr8_2:56481061-56481080 None:intergenic 35.0%
! ATGTGTTTGTCTTGTTGGTT+AGG + chr8_2:56481061-56481080 Msa1256470:three_prime_UTR 35.0%
! TGTGTTTGTCTTGTTGGTTA+GGG + chr8_2:56481062-56481081 Msa1256470:three_prime_UTR 35.0%
GGTAAATTATTCATTGGTGG+TGG + chr8_2:56481274-56481293 Msa1256470:three_prime_UTR 35.0%
ATCTTATACCAACGTTAGCA+TGG - chr8_2:56481355-56481374 None:intergenic 35.0%
TGTGCGCAAAACGAAAATAA+TGG - chr8_2:56479119-56479138 None:intergenic 35.0%
TAACGGTCAAAAAGCTAAGA+TGG + chr8_2:56479204-56479223 Msa1256470:CDS 35.0%
CAAAAAAGCTATGTCAATCC+AGG + chr8_2:56479425-56479444 Msa1256470:CDS 35.0%
!! ACAATCATAGTTCTGAACAG+AGG - chr8_2:56479656-56479675 None:intergenic 35.0%
AATTCGTTATGTTAGGGAGT+TGG + chr8_2:56479874-56479893 Msa1256470:intron 35.0%
ATTCGTTATGTTAGGGAGTT+GGG + chr8_2:56479875-56479894 Msa1256470:intron 35.0%
! TGGGTTGGGAGAAAATATAA+AGG + chr8_2:56479894-56479913 Msa1256470:intron 35.0%
GGGTTGGGAGAAAATATAAA+GGG + chr8_2:56479895-56479914 Msa1256470:intron 35.0%
GGGAGAAAATATAAAGGGAA+AGG + chr8_2:56479900-56479919 Msa1256470:intron 35.0%
! TAAGTTTCTACAGAGGCTTT+TGG - chr8_2:56480104-56480123 None:intergenic 35.0%
GAAATTCTGACTTCTTTGGT+TGG + chr8_2:56480191-56480210 Msa1256470:intron 35.0%
CACAGTATGTAAGTTCCTTT+CGG + chr8_2:56480380-56480399 Msa1256470:intron 35.0%
! GTTTGACAAGTTCTGTTTTG+AGG + chr8_2:56480506-56480525 Msa1256470:intron 35.0%
! TGCATTGCTGTAGTATTGAA+TGG + chr8_2:56480801-56480820 Msa1256470:intron 35.0%
! CAAGTGAAGAGATCAGATTT+TGG - chr8_2:56480942-56480961 None:intergenic 35.0%
!! TCATGCTTCTGGTTTAAGAT+GGG - chr8_2:56480970-56480989 None:intergenic 35.0%
!! TTCATGCTTCTGGTTTAAGA+TGG - chr8_2:56480971-56480990 None:intergenic 35.0%
! TTAAACCAGAAGCATGAAGT+GGG + chr8_2:56480973-56480992 Msa1256470:exon 35.0%
ATCCTATGTGTTTGTCTTGT+TGG + chr8_2:56481056-56481075 Msa1256470:three_prime_UTR 35.0%
AACCAACAAGACAAACACAT+AGG - chr8_2:56481061-56481080 None:intergenic 35.0%
! ATGTGTTTGTCTTGTTGGTT+AGG + chr8_2:56481061-56481080 Msa1256470:three_prime_UTR 35.0%
! TGTGTTTGTCTTGTTGGTTA+GGG + chr8_2:56481062-56481081 Msa1256470:three_prime_UTR 35.0%
GGTAAATTATTCATTGGTGG+TGG + chr8_2:56481274-56481293 Msa1256470:three_prime_UTR 35.0%
ATCTTATACCAACGTTAGCA+TGG - chr8_2:56481355-56481374 None:intergenic 35.0%
TAATGGAATTGTCGAGGGAA+TGG - chr8_2:56479279-56479298 None:intergenic 40.0%
GTTTCAAAGGGTTCTCTGTT+TGG + chr8_2:56479565-56479584 Msa1256470:intron 40.0%
TGTTTGGATCCCCTTGATTT+GGG + chr8_2:56479581-56479600 Msa1256470:intron 40.0%
AAAACTGAGCCCCAAATCAA+GGG - chr8_2:56479594-56479613 None:intergenic 40.0%
TAAAACTGAGCCCCAAATCA+AGG - chr8_2:56479595-56479614 None:intergenic 40.0%
TGCTCATAAGCCAAACATCA+TGG - chr8_2:56479804-56479823 None:intergenic 40.0%
!! GCTTATGAGCATTTTAACGG+AGG + chr8_2:56479813-56479832 Msa1256470:intron 40.0%
TTATGTTAGGGAGTTGGGTT+GGG + chr8_2:56479880-56479899 Msa1256470:intron 40.0%
! CTTCTTTGGTTGGCGTATTT+TGG + chr8_2:56480201-56480220 Msa1256470:intron 40.0%
AGCAACATACAGACTGTAGT+TGG + chr8_2:56480484-56480503 Msa1256470:intron 40.0%
GCATTATGCAGTTTACACGA+TGG - chr8_2:56480551-56480570 None:intergenic 40.0%
GTACTATGCAGTTTACACAG+TGG - chr8_2:56480655-56480674 None:intergenic 40.0%
! TGATTGATGATTGCAGTGCA+AGG + chr8_2:56480848-56480867 Msa1256470:intron 40.0%
!! CATGCTTCTGGTTTAAGATG+GGG - chr8_2:56480969-56480988 None:intergenic 40.0%
! CTTAAACCAGAAGCATGAAG+TGG + chr8_2:56480972-56480991 Msa1256470:exon 40.0%
TTGGTTAGGGAAAGACACAA+GGG + chr8_2:56481075-56481094 Msa1256470:three_prime_UTR 40.0%
CAACAGTTTCTCACACTTGA+GGG - chr8_2:56481119-56481138 None:intergenic 40.0%
TCAACAGTTTCTCACACTTG+AGG - chr8_2:56481120-56481139 None:intergenic 40.0%
CTCCGAAAGCAACCTAAAAT+TGG + chr8_2:56481253-56481272 Msa1256470:three_prime_UTR 40.0%
CCAAATCACAGTTGCTTCAT+AGG - chr8_2:56481313-56481332 None:intergenic 40.0%
CCTATGAAGCAACTGTGATT+TGG + chr8_2:56481310-56481329 Msa1256470:three_prime_UTR 40.0%
!! AGCAACTGTGATTTGGTGTA+TGG + chr8_2:56481317-56481336 Msa1256470:three_prime_UTR 40.0%
TAATGGAATTGTCGAGGGAA+TGG - chr8_2:56479279-56479298 None:intergenic 40.0%
GTTTCAAAGGGTTCTCTGTT+TGG + chr8_2:56479565-56479584 Msa1256470:intron 40.0%
TGTTTGGATCCCCTTGATTT+GGG + chr8_2:56479581-56479600 Msa1256470:intron 40.0%
AAAACTGAGCCCCAAATCAA+GGG - chr8_2:56479594-56479613 None:intergenic 40.0%
TAAAACTGAGCCCCAAATCA+AGG - chr8_2:56479595-56479614 None:intergenic 40.0%
TGCTCATAAGCCAAACATCA+TGG - chr8_2:56479804-56479823 None:intergenic 40.0%
!! GCTTATGAGCATTTTAACGG+AGG + chr8_2:56479813-56479832 Msa1256470:intron 40.0%
TTATGTTAGGGAGTTGGGTT+GGG + chr8_2:56479880-56479899 Msa1256470:intron 40.0%
! CTTCTTTGGTTGGCGTATTT+TGG + chr8_2:56480201-56480220 Msa1256470:intron 40.0%
AGCAACATACAGACTGTAGT+TGG + chr8_2:56480484-56480503 Msa1256470:intron 40.0%
GCATTATGCAGTTTACACGA+TGG - chr8_2:56480551-56480570 None:intergenic 40.0%
GTACTATGCAGTTTACACAG+TGG - chr8_2:56480655-56480674 None:intergenic 40.0%
! TGATTGATGATTGCAGTGCA+AGG + chr8_2:56480848-56480867 Msa1256470:intron 40.0%
!! CATGCTTCTGGTTTAAGATG+GGG - chr8_2:56480969-56480988 None:intergenic 40.0%
! CTTAAACCAGAAGCATGAAG+TGG + chr8_2:56480972-56480991 Msa1256470:exon 40.0%
TTGGTTAGGGAAAGACACAA+GGG + chr8_2:56481075-56481094 Msa1256470:three_prime_UTR 40.0%
CAACAGTTTCTCACACTTGA+GGG - chr8_2:56481119-56481138 None:intergenic 40.0%
TCAACAGTTTCTCACACTTG+AGG - chr8_2:56481120-56481139 None:intergenic 40.0%
CTCCGAAAGCAACCTAAAAT+TGG + chr8_2:56481253-56481272 Msa1256470:three_prime_UTR 40.0%
CCAAATCACAGTTGCTTCAT+AGG - chr8_2:56481313-56481332 None:intergenic 40.0%
CCTATGAAGCAACTGTGATT+TGG + chr8_2:56481310-56481329 Msa1256470:three_prime_UTR 40.0%
!! AGCAACTGTGATTTGGTGTA+TGG + chr8_2:56481317-56481336 Msa1256470:three_prime_UTR 40.0%
AAGCAGAAGAATGCTGGCAA+AGG + chr8_2:56479247-56479266 Msa1256470:CDS 45.0%
CTGTTTGGATCCCCTTGATT+TGG + chr8_2:56479580-56479599 Msa1256470:intron 45.0%
! GTTTGGATCCCCTTGATTTG+GGG + chr8_2:56479582-56479601 Msa1256470:intron 45.0%
AAACTGAGCCCCAAATCAAG+GGG - chr8_2:56479593-56479612 None:intergenic 45.0%
GTTATGTTAGGGAGTTGGGT+TGG + chr8_2:56479879-56479898 Msa1256470:intron 45.0%
TGTAAGTTCCTTTCGGTGAC+TGG + chr8_2:56480387-56480406 Msa1256470:intron 45.0%
ATAAAGAGCCAGTCACCGAA+AGG - chr8_2:56480398-56480417 None:intergenic 45.0%
CTTGCACTTCACTTCTGATG+TGG - chr8_2:56480898-56480917 None:intergenic 45.0%
CACATCAGAAGTGAAGTGCA+AGG + chr8_2:56480896-56480915 Msa1256470:CDS 45.0%
!! GAGATCAGATTTTGGGTGTC+TGG - chr8_2:56480934-56480953 None:intergenic 45.0%
GTTGGTTAGGGAAAGACACA+AGG + chr8_2:56481074-56481093 Msa1256470:three_prime_UTR 45.0%
TGGTTAGGGAAAGACACAAG+GGG + chr8_2:56481076-56481095 Msa1256470:three_prime_UTR 45.0%
ACTGTTAGCCATGCTAACGT+TGG + chr8_2:56481344-56481363 Msa1256470:three_prime_UTR 45.0%
AAGCAGAAGAATGCTGGCAA+AGG + chr8_2:56479247-56479266 Msa1256470:CDS 45.0%
CTGTTTGGATCCCCTTGATT+TGG + chr8_2:56479580-56479599 Msa1256470:intron 45.0%
! GTTTGGATCCCCTTGATTTG+GGG + chr8_2:56479582-56479601 Msa1256470:intron 45.0%
AAACTGAGCCCCAAATCAAG+GGG - chr8_2:56479593-56479612 None:intergenic 45.0%
GTTATGTTAGGGAGTTGGGT+TGG + chr8_2:56479879-56479898 Msa1256470:intron 45.0%
TGTAAGTTCCTTTCGGTGAC+TGG + chr8_2:56480387-56480406 Msa1256470:intron 45.0%
ATAAAGAGCCAGTCACCGAA+AGG - chr8_2:56480398-56480417 None:intergenic 45.0%
CTTGCACTTCACTTCTGATG+TGG - chr8_2:56480898-56480917 None:intergenic 45.0%
CACATCAGAAGTGAAGTGCA+AGG + chr8_2:56480896-56480915 Msa1256470:CDS 45.0%
!! GAGATCAGATTTTGGGTGTC+TGG - chr8_2:56480934-56480953 None:intergenic 45.0%
GTTGGTTAGGGAAAGACACA+AGG + chr8_2:56481074-56481093 Msa1256470:three_prime_UTR 45.0%
TGGTTAGGGAAAGACACAAG+GGG + chr8_2:56481076-56481095 Msa1256470:three_prime_UTR 45.0%
ACTGTTAGCCATGCTAACGT+TGG + chr8_2:56481344-56481363 Msa1256470:three_prime_UTR 45.0%
!!! TATGTTTTATAAATTTTTAA+GGG - chr8_2:56480250-56480269 None:intergenic 5.0%
!!! TATGTTTTATAAATTTTTAA+GGG - chr8_2:56480250-56480269 None:intergenic 5.0%
CAGCATTCTTCTGCTTCTCG+AGG - chr8_2:56479243-56479262 None:intergenic 50.0%
CTCGAGAAGCAGAAGAATGC+TGG + chr8_2:56479241-56479260 Msa1256470:CDS 50.0%
TGCTTCCCACTTCATGCTTC+TGG - chr8_2:56480981-56481000 None:intergenic 50.0%
CAGCATTCTTCTGCTTCTCG+AGG - chr8_2:56479243-56479262 None:intergenic 50.0%
CTCGAGAAGCAGAAGAATGC+TGG + chr8_2:56479241-56479260 Msa1256470:CDS 50.0%
TGCTTCCCACTTCATGCTTC+TGG - chr8_2:56480981-56481000 None:intergenic 50.0%
TTGAGGGTCTCTCTCAGCCA+TGG + chr8_2:56479174-56479193 Msa1256470:exon 55.0%
TGAGGGTCTCTCTCAGCCAT+GGG + chr8_2:56479175-56479194 Msa1256470:exon 55.0%
TCAGCCATGGGTGGAGGTAA+CGG + chr8_2:56479187-56479206 Msa1256470:exon 55.0%
TTGACCGTTACCTCCACCCA+TGG - chr8_2:56479194-56479213 None:intergenic 55.0%
AAGCTAAGATGGCTCGCGAG+AGG + chr8_2:56479215-56479234 Msa1256470:CDS 55.0%
! GAAGTGCAAGGAGCATGCTG+AGG + chr8_2:56480908-56480927 Msa1256470:CDS 55.0%
TTGAGGGTCTCTCTCAGCCA+TGG + chr8_2:56479174-56479193 Msa1256470:exon 55.0%
TGAGGGTCTCTCTCAGCCAT+GGG + chr8_2:56479175-56479194 Msa1256470:exon 55.0%
TCAGCCATGGGTGGAGGTAA+CGG + chr8_2:56479187-56479206 Msa1256470:exon 55.0%
TTGACCGTTACCTCCACCCA+TGG - chr8_2:56479194-56479213 None:intergenic 55.0%
AAGCTAAGATGGCTCGCGAG+AGG + chr8_2:56479215-56479234 Msa1256470:CDS 55.0%
! GAAGTGCAAGGAGCATGCTG+AGG + chr8_2:56480908-56480927 Msa1256470:CDS 55.0%
TCTCTCTCAGCCATGGGTGG+AGG + chr8_2:56479181-56479200 Msa1256470:exon 60.0%
TCTCTCTCAGCCATGGGTGG+AGG + chr8_2:56479181-56479200 Msa1256470:exon 60.0%
GGGTCTCTCTCAGCCATGGG+TGG + chr8_2:56479178-56479197 Msa1256470:exon 65.0%
GGGTCTCTCTCAGCCATGGG+TGG + chr8_2:56479178-56479197 Msa1256470:exon 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 56479008 56481389 56479008 ID=Msa1256470;Name=Msa1256470
chr8_2 mRNA 56479008 56481389 56479008 ID=Msa1256470-mRNA-1;Parent=Msa1256470;Name=Msa1256470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=185|1|1|1|1|1|3|400|80
chr8_2 exon 56479008 56479268 56479008 ID=Msa1256470-mRNA-1:exon:17411;Parent=Msa1256470-mRNA-1
chr8_2 exon 56479406 56479446 56479406 ID=Msa1256470-mRNA-1:exon:17412;Parent=Msa1256470-mRNA-1
chr8_2 exon 56480864 56481389 56480864 ID=Msa1256470-mRNA-1:exon:17413;Parent=Msa1256470-mRNA-1
chr8_2 five_prime_UTR 56479008 56479192 56479008 ID=Msa1256470-mRNA-1:five_prime_utr;Parent=Msa1256470-mRNA-1
chr8_2 CDS 56479193 56479268 56479193 ID=Msa1256470-mRNA-1:cds;Parent=Msa1256470-mRNA-1
chr8_2 CDS 56479406 56479446 56479406 ID=Msa1256470-mRNA-1:cds;Parent=Msa1256470-mRNA-1
chr8_2 CDS 56480864 56480989 56480864 ID=Msa1256470-mRNA-1:cds;Parent=Msa1256470-mRNA-1
chr8_2 three_prime_UTR 56480990 56481389 56480990 ID=Msa1256470-mRNA-1:three_prime_utr;Parent=Msa1256470-mRNA-1
Gene Sequence

>Msa1256470

ATGGGTGGAGGTAACGGTCAAAAAGCTAAGATGGCTCGCGAGAGGAACCTCGAGAAGCAGAAGAATGCTGGCAAAGGAAGCCAGCTTGAAAAAAACAAAAAAGCTATGTCAATCCAGTGCAAGGTGTGCATGCAAACATTTATCTGCACCACATCAGAAGTGAAGTGCAAGGAGCATGCTGAGGCCAGACACCCAAAATCTGATCTCTTCACTTGTTTTCCCCATCTTAAACCAGAAGCATGA

Protein sequence

>Msa1256470

MGGGNGQKAKMARERNLEKQKNAGKGSQLEKNKKAMSIQCKVCMQTFICTTSEVKCKEHAEARHPKSDLFTCFPHLKPEA*