AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0765380

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765380 MtrunA17_Chr5g0416481 98.328 299 5 0 1 299 1 299 0.0 608
Msa0765380 MtrunA17_Chr2g0297071 39.560 182 101 3 114 294 135 308 8.98e-34 125
Msa0765380 MtrunA17_Chr1g0204311 75.000 68 17 0 56 123 17 84 3.37e-29 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0765380 AT2G02880.1 57.929 309 109 6 1 289 1 308 3.04e-114 332
Msa0765380 AT5G62270.1 37.433 187 112 2 114 299 199 381 5.07e-25 103
Msa0765380 AT5G62270.2 37.433 187 112 2 114 299 199 381 7.77e-25 103

Find 147 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCTTTGGATCAGTTTA+AGG 0.153210 5_2:-26303677 None:intergenic
TCCTAATGTCATTCATTATA+TGG 0.171102 5_2:-26303742 None:intergenic
TAAGTATATCTTCTTCTCTT+TGG 0.205774 5_2:-26302608 None:intergenic
CTGTGTTGGTGGTGCCAATC+TGG 0.232756 5_2:+26303201 Msa0765380:three_prime_UTR
TTCTATTCTAATTTAACTTC+TGG 0.232921 5_2:-26303399 None:intergenic
CCCTTCCCTCTCTTGGCATT+TGG 0.234727 5_2:-26302867 None:intergenic
TTAAGGACATTAAATTAAAT+TGG 0.238313 5_2:+26303296 Msa0765380:three_prime_UTR
GAAACTTGAGGAGGCGAAAT+TGG 0.248773 5_2:+26298831 Msa0765380:CDS
AACTGAAGGAAGCAAGTTTA+AGG 0.257838 5_2:+26303441 Msa0765380:three_prime_UTR
GAAAGGTGGGATTTATAGTT+TGG 0.258551 5_2:+26298738 Msa0765380:CDS
AAAATATTAAGAAGGATTAT+AGG 0.285810 5_2:+26298761 Msa0765380:CDS
TTAAACTGATCCAAAGCTTT+TGG 0.296668 5_2:+26303679 Msa0765380:three_prime_UTR
AAGTATATCTTCTTCTCTTT+GGG 0.299726 5_2:-26302607 None:intergenic
AAAATCAAGATGGAAATATA+TGG 0.299831 5_2:+26302577 Msa0765380:CDS
TCACATTGTCATTTCCTTCA+TGG 0.302593 5_2:-26303174 None:intergenic
TCCCATGGTGCTCGTGTCTT+TGG 0.306250 5_2:-26298586 None:intergenic
ACGGATTGTTGTTGGGAGTT+TGG 0.339202 5_2:-26298479 None:intergenic
TGTATGAATGCTAGTTAGAT+TGG 0.340226 5_2:+26303355 Msa0765380:three_prime_UTR
TGAAACTGTAGGGTACAAAA+TGG 0.347785 5_2:+26303549 Msa0765380:three_prime_UTR
TCTATTCTAATTTAACTTCT+GGG 0.364297 5_2:-26303398 None:intergenic
ATGTCGCTTTAACACTTAGA+AGG 0.364899 5_2:+26303254 Msa0765380:three_prime_UTR
ATTTGCTCTTAACAGAATCT+TGG 0.365991 5_2:+26303139 Msa0765380:three_prime_UTR
GTGCTCGTGTCTTTGGTGTT+AGG 0.368387 5_2:-26298579 None:intergenic
AAACTTGAGGAGGCGAAATT+GGG 0.372804 5_2:+26298832 Msa0765380:CDS
GAAGTCTTCTCTTCTTTGAA+TGG 0.374215 5_2:-26302933 None:intergenic
CTTCTCTTCTTTGAATGGTT+GGG 0.374760 5_2:-26302928 None:intergenic
AGAAGTTACATGCTGGGCTT+TGG 0.380743 5_2:+26298794 Msa0765380:CDS
ACACATAAAATTAAGCAGTT+TGG 0.382019 5_2:-26303791 None:intergenic
TCTTCTCTTCTTTGAATGGT+TGG 0.391343 5_2:-26302929 None:intergenic
CATTCGTCTTCGCCGCTTCG+AGG 0.392268 5_2:-26298520 None:intergenic
ACATGCTGGGCTTTGGAGTA+AGG 0.392569 5_2:+26298801 Msa0765380:CDS
TGTAGGGTACAAAATGGATT+TGG 0.397122 5_2:+26303555 Msa0765380:three_prime_UTR
AATTGCGTATAGCAAATTTC+AGG 0.398978 5_2:+26302650 Msa0765380:CDS
TGTTGTTGGGAGTTTGGTGG+TGG 0.399502 5_2:-26298473 None:intergenic
GGGGTGTGGTAGTGGTAATG+GGG 0.403563 5_2:+26298855 Msa0765380:CDS
TTCTTTGAATGGTTGGGTAG+AGG 0.407560 5_2:-26302922 None:intergenic
AAAGCTTTGGATCAGTTTAA+GGG 0.411256 5_2:-26303676 None:intergenic
TGGAGGAGATGAATGAGAAT+TGG 0.412030 5_2:+26298665 Msa0765380:CDS
GAAAATATTGCTGCCCAGAT+TGG 0.426421 5_2:-26303215 None:intergenic
TGGAGAAGAGTGATTTGAAT+TGG 0.428996 5_2:-26298453 None:intergenic
CGCGGAGACGAAGGCGTTTG+TGG 0.429453 5_2:+26298645 Msa0765380:CDS
TGGGTGAGGATTTCAAGCTT+TGG 0.430185 5_2:-26303722 None:intergenic
TCTTAACAGAATCTTGGTTA+AGG 0.437011 5_2:+26303145 Msa0765380:three_prime_UTR
TCTTTGAATGGTTGGGTAGA+GGG 0.440125 5_2:-26302921 None:intergenic
ATGTATTTCCACCCATCAAT+TGG 0.442948 5_2:-26302828 None:intergenic
AATGTATTAGGCAAATGCTT+TGG 0.443655 5_2:+26303651 Msa0765380:three_prime_UTR
CCCATATAATGAATGACATT+AGG 0.444766 5_2:+26303741 Msa0765380:three_prime_UTR
CCTAATGTCATTCATTATAT+GGG 0.446129 5_2:-26303741 None:intergenic
ATTGGAATGAGAGGAGGAAA+GGG 0.447716 5_2:+26298683 Msa0765380:CDS
CGTTGTTCAGATCATTATTG+TGG 0.449866 5_2:-26302497 None:intergenic
GTGAGGATGACCAAAAGCTT+TGG 0.451099 5_2:-26303689 None:intergenic
GATATTGTTTCCCACCCATC+AGG 0.452510 5_2:-26302552 None:intergenic
AACACTGCCCTTCCCTCTCT+TGG 0.455080 5_2:-26302874 None:intergenic
GAGGAGGAAAGGGTTGAAGA+AGG 0.457918 5_2:+26298693 Msa0765380:CDS
AGAAGAAGATATACTTATGC+AGG 0.469115 5_2:+26302614 Msa0765380:CDS
GTGAGGATTTCAAGCTTTGG+AGG 0.476965 5_2:-26303719 None:intergenic
TGTGTTGGTGGTGCCAATCT+GGG 0.478282 5_2:+26303202 Msa0765380:three_prime_UTR
TAGTTTGGAAAATATTAAGA+AGG 0.479941 5_2:+26298753 Msa0765380:CDS
GAGAATTGACGGATTGTTGT+TGG 0.486189 5_2:-26298487 None:intergenic
AGCCGGAGGAGGCCAATTGA+TGG 0.487719 5_2:+26302816 Msa0765380:CDS
AGAATTGACGGATTGTTGTT+GGG 0.488814 5_2:-26298486 None:intergenic
TGAATGAGAATTGGAATGAG+AGG 0.489738 5_2:+26298674 Msa0765380:CDS
GTCTTTGGTGTTAGGTCTTG+TGG 0.490061 5_2:-26298571 None:intergenic
GAAATACATGATTGAGGTGG+TGG 0.492359 5_2:+26302842 Msa0765380:CDS
TTCGGAAGAAGTGGCGGACG+CGG 0.493653 5_2:+26298627 Msa0765380:CDS
GTTGTTCAGATCATTATTGT+GGG 0.496230 5_2:-26302496 None:intergenic
CCCCTTGGTAGGAGATAGCC+TGG 0.496275 5_2:+26302975 Msa0765380:exon
CTCGAAGCGGCGAAGACGAA+TGG 0.498375 5_2:+26298521 Msa0765380:CDS
GATTGTTGTTGGGAGTTTGG+TGG 0.499349 5_2:-26298476 None:intergenic
CAACTTTGCCGAGGTGTGAC+CGG 0.499946 5_2:+26303088 Msa0765380:three_prime_UTR
AGGAGGAGAATGTGAAAGGT+GGG 0.500011 5_2:+26298725 Msa0765380:CDS
GTTGAAGAAGGAGAAGGTTG+AGG 0.502124 5_2:+26298705 Msa0765380:CDS
ACCCATCAATTGGCCTCCTC+CGG 0.503862 5_2:-26302818 None:intergenic
TCAAGACACACATATTTAGC+CGG 0.505354 5_2:+26302799 Msa0765380:CDS
AAGACGAATGGAACGAAGCA+TGG 0.512420 5_2:+26298533 Msa0765380:CDS
AATTGGAATGAGAGGAGGAA+AGG 0.513445 5_2:+26298682 Msa0765380:CDS
TCTCGCAAAATAGAAACAAA+AGG 0.514282 5_2:+26303055 Msa0765380:three_prime_UTR
GACCAGGCTATCTCCTACCA+AGG 0.517693 5_2:-26302977 None:intergenic
AAATCAAGATGGAAATATAT+GGG 0.521501 5_2:+26302578 Msa0765380:CDS
GCCGGAGGAGGCCAATTGAT+GGG 0.524719 5_2:+26302817 Msa0765380:CDS
GCACTGAGAAAGAAATAGAA+TGG 0.530490 5_2:+26303594 Msa0765380:three_prime_UTR
GAGGAGGAGAATGTGAAAGG+TGG 0.533233 5_2:+26298724 Msa0765380:CDS
AAGAAACAGAAGTTACATGC+TGG 0.536086 5_2:+26298787 Msa0765380:CDS
AGACGAATGGAACGAAGCAT+GGG 0.537284 5_2:+26298534 Msa0765380:CDS
GAAGAAGGAGAAGGTTGAGG+AGG 0.538173 5_2:+26298708 Msa0765380:CDS
TGTCATTCATTATATGGGTG+AGG 0.538853 5_2:-26303736 None:intergenic
AACTTGAGGAGGCGAAATTG+GGG 0.540273 5_2:+26298833 Msa0765380:CDS
TAAGGAGATTGAGAAACTTG+AGG 0.544087 5_2:+26298819 Msa0765380:CDS
CCAAATGCCAAGAGAGGGAA+GGG 0.544767 5_2:+26302867 Msa0765380:CDS
ATTTGGACCTTTGTATGTGT+TGG 0.545443 5_2:+26303572 Msa0765380:three_prime_UTR
GGTTAAGGTTCAAACCATGA+AGG 0.545596 5_2:+26303160 Msa0765380:three_prime_UTR
GCAGTATGTACAGTGAGTTA+AGG 0.545841 5_2:+26303279 Msa0765380:three_prime_UTR
ACCAAAGACACGAGCACCAT+GGG 0.550429 5_2:+26298585 Msa0765380:CDS
TGTTGTTGTGATTCTTCGAA+AGG 0.551025 5_2:-26298416 None:intergenic
AGGAGACGTGAATTTCGCTT+CGG 0.552773 5_2:+26298609 Msa0765380:CDS
TTCAAGCTTTGGAGGGCTAG+AGG 0.554324 5_2:-26303711 None:intergenic
AACGTATCTTCAAGAGGGAA+AGG 0.555056 5_2:+26303513 Msa0765380:three_prime_UTR
GATTGCGAGATGAGAATTGA+CGG 0.555084 5_2:-26298498 None:intergenic
GAATTTCGCTTCGGAAGAAG+TGG 0.555553 5_2:+26298618 Msa0765380:CDS
GATAAGAGTTACATTCCCCT+TGG 0.562876 5_2:+26302960 Msa0765380:CDS
TGAATGACATTAGGATGCAT+AGG 0.569589 5_2:+26303750 Msa0765380:three_prime_UTR
TGAGGATTTCAAGCTTTGGA+GGG 0.571831 5_2:-26303718 None:intergenic
AGAAACAGAAGTTACATGCT+GGG 0.572363 5_2:+26298788 Msa0765380:CDS
TTTAGATCAAGCACAACTGA+AGG 0.573033 5_2:+26303427 Msa0765380:three_prime_UTR
GTTGAGGAGGAGAATGTGAA+AGG 0.575029 5_2:+26298721 Msa0765380:CDS
CACACATATTTAGCCGGAGG+AGG 0.582454 5_2:+26302805 Msa0765380:CDS
GAAAGGGTTGAAGAAGGAGA+AGG 0.586592 5_2:+26298699 Msa0765380:CDS
AATGTGATGTACTGTGTTGG+TGG 0.588310 5_2:+26303190 Msa0765380:three_prime_UTR
AGAGTTACATTCCCCTTGGT+AGG 0.590750 5_2:+26302964 Msa0765380:CDS
TACTTATGCAGGAATTCGAA+CGG 0.593879 5_2:+26302625 Msa0765380:CDS
CTCAGTGCCAACACATACAA+AGG 0.597180 5_2:-26303579 None:intergenic
ACCAGGCTATCTCCTACCAA+GGG 0.602895 5_2:-26302976 None:intergenic
TTGCCGAGGTGTGACCGGAA+TGG 0.607469 5_2:+26303093 Msa0765380:three_prime_UTR
ACCAAATGCCAAGAGAGGGA+AGG 0.608335 5_2:+26302866 Msa0765380:CDS
AAATTCACGTCTCCTTCCCA+TGG 0.608435 5_2:-26298601 None:intergenic
AGTGGCGGACGCGGAGACGA+AGG 0.608660 5_2:+26298636 Msa0765380:CDS
CTTGAGGAGGCGAAATTGGG+GGG 0.616628 5_2:+26298835 Msa0765380:CDS
TGACATAACGTATCTTCAAG+AGG 0.617237 5_2:+26303507 Msa0765380:three_prime_UTR
CTCTGCAGAGGTCATTGCAG+TGG 0.620641 5_2:+26303017 Msa0765380:three_prime_UTR
CACCAAAGACACGAGCACCA+TGG 0.621256 5_2:+26298584 Msa0765380:CDS
AAGACACGAGCACCATGGGA+AGG 0.621580 5_2:+26298589 Msa0765380:CDS
TTTCGCTTCGGAAGAAGTGG+CGG 0.622582 5_2:+26298621 Msa0765380:CDS
ATACATAAAACTACATGACC+AGG 0.626226 5_2:-26302993 None:intergenic
GTTTGGTCTAATCCTAGTGT+CGG 0.629172 5_2:-26303774 None:intergenic
GTGGGACCAAATGCCAAGAG+AGG 0.630227 5_2:+26302861 Msa0765380:CDS
GACATAACGTATCTTCAAGA+GGG 0.631292 5_2:+26303508 Msa0765380:three_prime_UTR
GCTTTGGAGGGCTAGAGGTG+AGG 0.633112 5_2:-26303706 None:intergenic
CTGCCATTCCGGTCACACCT+CGG 0.639459 5_2:-26303096 None:intergenic
GGAGACGAAGGCGTTTGTGG+AGG 0.642284 5_2:+26298648 Msa0765380:CDS
GACAATGTGATGTACTGTGT+TGG 0.643437 5_2:+26303187 Msa0765380:three_prime_UTR
ACTTGAGGAGGCGAAATTGG+GGG 0.644793 5_2:+26298834 Msa0765380:CDS
ATGAGAATTGGAATGAGAGG+AGG 0.646848 5_2:+26298677 Msa0765380:CDS
GGATGCATAGGACCGACACT+AGG 0.647618 5_2:+26303762 Msa0765380:three_prime_UTR
GTAGAGGGATCAGAGAGACT+TGG 0.651783 5_2:-26302906 None:intergenic
TTGAGGAGGCGAAATTGGGG+GGG 0.653265 5_2:+26298836 Msa0765380:CDS
TGGGACCAAATGCCAAGAGA+GGG 0.653748 5_2:+26302862 Msa0765380:CDS
GGAATGGCAGCTGAAAATCT+CGG 0.657229 5_2:+26303109 Msa0765380:three_prime_UTR
TGATCACTGCAACTTTGCCG+AGG 0.672315 5_2:+26303079 Msa0765380:three_prime_UTR
GGAGGAGGCCAATTGATGGG+TGG 0.673463 5_2:+26302820 Msa0765380:CDS
AGACACACATATTTAGCCGG+AGG 0.692755 5_2:+26302802 Msa0765380:CDS
GGAGATTGAGAAACTTGAGG+AGG 0.693976 5_2:+26298822 Msa0765380:CDS
TCATCTCGCAATCCTCGAAG+CGG 0.702378 5_2:+26298508 Msa0765380:CDS
AAATACATGATTGAGGTGGT+GGG 0.711165 5_2:+26302843 Msa0765380:CDS
CCAGGCTATCTCCTACCAAG+GGG 0.715022 5_2:-26302975 None:intergenic
ACGAAGCATGGGAATCAGCG+TGG 0.715370 5_2:+26298545 Msa0765380:CDS
GTGGAAATACATGATTGAGG+TGG 0.721823 5_2:+26302839 Msa0765380:CDS
TGGGTGGAAATACATGATTG+AGG 0.745836 5_2:+26302836 Msa0765380:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATTAAGAAGGATTAT+AGG + chr5_2:26298761-26298780 Msa0765380:CDS 15.0%
!! TTAAACTATTTATGCAAATA+TGG + chr5_2:26299563-26299582 Msa0765380:intron 15.0%
!! AATAAGATGCTTATAAAAAT+AGG + chr5_2:26300022-26300041 Msa0765380:intron 15.0%
!! ATAAGATGCTTATAAAAATA+GGG + chr5_2:26300023-26300042 Msa0765380:intron 15.0%
!!! TTAATTACTTTAAGCTTTTA+AGG + chr5_2:26302095-26302114 Msa0765380:intron 15.0%
!! TTTCTAAATATTTCAATTAG+CGG + chr5_2:26302272-26302291 Msa0765380:intron 15.0%
!! AAAACAATATAATGCTTAAT+AGG - chr5_2:26302706-26302725 None:intergenic 15.0%
!!! ATTAAGCATTATATTGTTTT+TGG + chr5_2:26302706-26302725 Msa0765380:intron 15.0%
!! TATAAAGTTATAAATGCTAA+AGG - chr5_2:26302752-26302771 None:intergenic 15.0%
!! TTAAGGACATTAAATTAAAT+TGG + chr5_2:26303296-26303315 Msa0765380:three_prime_UTR 15.0%
!!! TGTATATTTTTTTTTTGTCT+TGG + chr5_2:26303811-26303830 Msa0765380:three_prime_UTR 15.0%
!! TAGTTTGGAAAATATTAAGA+AGG + chr5_2:26298753-26298772 Msa0765380:CDS 20.0%
!! ATCAATCAATTAAGAAACTA+TGG - chr5_2:26299589-26299608 None:intergenic 20.0%
!! ATGACATATTTATAAGTCAT+TGG - chr5_2:26299694-26299713 None:intergenic 20.0%
!!! TAGTGGTTTTAATTTATACT+TGG + chr5_2:26300378-26300397 Msa0765380:intron 20.0%
!!! AGTGGATGAAAATTAAATTT+TGG + chr5_2:26300558-26300577 Msa0765380:intron 20.0%
!!! TTTTTTCACTTTAATGTTGA+AGG + chr5_2:26301130-26301149 Msa0765380:intron 20.0%
!!! TTTGTTTCTTTGAATTTTGT+TGG + chr5_2:26302127-26302146 Msa0765380:intron 20.0%
!! AGAAACATTAATATTAAAGC+AGG - chr5_2:26302438-26302457 None:intergenic 20.0%
!! AAAATCAAGATGGAAATATA+TGG + chr5_2:26302577-26302596 Msa0765380:CDS 20.0%
!! AAATCAAGATGGAAATATAT+GGG + chr5_2:26302578-26302597 Msa0765380:CDS 20.0%
!!! TCTATTCTAATTTAACTTCT+GGG - chr5_2:26303401-26303420 None:intergenic 20.0%
!!! TTCTATTCTAATTTAACTTC+TGG - chr5_2:26303402-26303421 None:intergenic 20.0%
!!! TGCATTTTCTTTTGTTATGA+AGG - chr5_2:26298394-26298413 None:intergenic 25.0%
!!! GTTTTATTTTATGCTCTGTT+TGG + chr5_2:26298941-26298960 Msa0765380:intron 25.0%
! TGTGTCAATACTTCATTTAA+AGG - chr5_2:26298974-26298993 None:intergenic 25.0%
!!! GTTGTTTTCATAAGTTATTC+TGG + chr5_2:26299195-26299214 Msa0765380:intron 25.0%
!! GCTGTTTAAGATAGTTTATA+TGG + chr5_2:26299460-26299479 Msa0765380:intron 25.0%
! AAAGTATGATCCAATTTAAG+AGG - chr5_2:26299624-26299643 None:intergenic 25.0%
! CATATTTATAAGTCATTGGA+TGG - chr5_2:26299690-26299709 None:intergenic 25.0%
! TAGCTAATATGGAAACAATT+TGG + chr5_2:26299918-26299937 Msa0765380:intron 25.0%
! GCTTGTATAACAAATACTTA+TGG + chr5_2:26299988-26300007 Msa0765380:intron 25.0%
! ATCAATCAATTAACCAACTA+TGG - chr5_2:26300049-26300068 None:intergenic 25.0%
!!! GCTTAAAATTAAGAGCATTT+AGG - chr5_2:26300233-26300252 None:intergenic 25.0%
! AAATTGAATTCAAAGTGTAG+TGG + chr5_2:26300361-26300380 Msa0765380:intron 25.0%
!! AATCACACACTTGATATTTT+TGG + chr5_2:26300815-26300834 Msa0765380:intron 25.0%
!! TGATGGCATTTAAAATGAAA+AGG - chr5_2:26301292-26301311 None:intergenic 25.0%
! ACCTATCTGTATATATGATA+AGG + chr5_2:26301439-26301458 Msa0765380:intron 25.0%
! ACCTTATCATATATACAGAT+AGG - chr5_2:26301443-26301462 None:intergenic 25.0%
!! TTTTATAACACATCATGTCA+TGG - chr5_2:26301549-26301568 None:intergenic 25.0%
! GTGTTATAAAATATAGACCT+TGG + chr5_2:26301558-26301577 Msa0765380:intron 25.0%
!!! CTCAATTTTAAGGTTAATTC+TGG - chr5_2:26301762-26301781 None:intergenic 25.0%
! CTTAAAATTGAGTCATTACA+GGG + chr5_2:26301770-26301789 Msa0765380:intron 25.0%
! TTAAAATTGAGTCATTACAG+GGG + chr5_2:26301771-26301790 Msa0765380:intron 25.0%
!! GGTATTTTATGATTTTCTCA+CGG + chr5_2:26301793-26301812 Msa0765380:intron 25.0%
! TGATTGAAAGAGAAAGAAAA+GGG - chr5_2:26301882-26301901 None:intergenic 25.0%
! TAAAACAGAAATGAAAACAG+TGG - chr5_2:26302063-26302082 None:intergenic 25.0%
! CAAAATTCAAAGAAACAAAC+AGG - chr5_2:26302126-26302145 None:intergenic 25.0%
! AGCCAAAAAAATAAAGATAG+CGG - chr5_2:26302318-26302337 None:intergenic 25.0%
!!! CTATCTTTATTTTTTTGGCT+CGG + chr5_2:26302318-26302337 Msa0765380:intron 25.0%
!!! ATGTTTTTGAATTCAGAAGT+TGG - chr5_2:26302531-26302550 None:intergenic 25.0%
! ACAATATCGAAAAATCAAGA+TGG + chr5_2:26302567-26302586 Msa0765380:CDS 25.0%
! AAGTATATCTTCTTCTCTTT+GGG - chr5_2:26302610-26302629 None:intergenic 25.0%
! TAAGTATATCTTCTTCTCTT+TGG - chr5_2:26302611-26302630 None:intergenic 25.0%
!!! AATTTAACTTCTGGGTTTTA+GGG - chr5_2:26303393-26303412 None:intergenic 25.0%
!!! TAATTTAACTTCTGGGTTTT+AGG - chr5_2:26303394-26303413 None:intergenic 25.0%
!! AAATGTTTTCATGAAACTGT+AGG + chr5_2:26303538-26303557 Msa0765380:three_prime_UTR 25.0%
!! AATGTTTTCATGAAACTGTA+GGG + chr5_2:26303539-26303558 Msa0765380:three_prime_UTR 25.0%
! CCTAATGTCATTCATTATAT+GGG - chr5_2:26303744-26303763 None:intergenic 25.0%
! TCCTAATGTCATTCATTATA+TGG - chr5_2:26303745-26303764 None:intergenic 25.0%
! ACACATAAAATTAAGCAGTT+TGG - chr5_2:26303794-26303813 None:intergenic 25.0%
! AAGTTATTCTGGAGAGATTA+TGG + chr5_2:26299206-26299225 Msa0765380:intron 30.0%
TTAAATAAGTCAATCCAAGC+AGG + chr5_2:26299317-26299336 Msa0765380:intron 30.0%
ATGATGTGTTCCTCTTAAAT+TGG + chr5_2:26299611-26299630 Msa0765380:intron 30.0%
TCAAATAAGTCAATCCAAAC+CGG + chr5_2:26299767-26299786 Msa0765380:intron 30.0%
! ATTTGGCTTCAGTTTATCTT+TGG + chr5_2:26299935-26299954 Msa0765380:intron 30.0%
TATAAAAATAGGGCCATAGT+TGG + chr5_2:26300033-26300052 Msa0765380:intron 30.0%
ATGATGTGATGCTCTTAAAT+TGG + chr5_2:26300071-26300090 Msa0765380:intron 30.0%
CTTCGGAAAAATATATTGCT+TGG - chr5_2:26300529-26300548 None:intergenic 30.0%
! CAAGCAATATATTTTTCCGA+AGG + chr5_2:26300527-26300546 Msa0765380:intron 30.0%
TCTATTAGTGATCTGTTTCA+AGG - chr5_2:26300593-26300612 None:intergenic 30.0%
TTGAAACAGATCACTAATAG+AGG + chr5_2:26300592-26300611 Msa0765380:intron 30.0%
TGCGAGGAACATTATATATT+TGG + chr5_2:26300893-26300912 Msa0765380:intron 30.0%
CATTATATATTTGGTCGTCT+TGG + chr5_2:26300902-26300921 Msa0765380:intron 30.0%
!!! CTGCTGATATATCTAGTTTT+AGG + chr5_2:26300988-26301007 Msa0765380:intron 30.0%
!!! AACATGCTTTTTTGTGCAAT+TGG + chr5_2:26301041-26301060 Msa0765380:intron 30.0%
!!! ACATGCTTTTTTGTGCAATT+GGG + chr5_2:26301042-26301061 Msa0765380:intron 30.0%
! TTTTTGTGCAATTGGGTTTT+AGG + chr5_2:26301049-26301068 Msa0765380:intron 30.0%
AAAGCATAAACTACAAGATG+AGG - chr5_2:26301231-26301250 None:intergenic 30.0%
!! TATGCTTTTTGTGAAAGTTG+AGG + chr5_2:26301243-26301262 Msa0765380:intron 30.0%
! TTTTTGTGAAAGTTGAGGAT+TGG + chr5_2:26301248-26301267 Msa0765380:intron 30.0%
! AAAATGAAAAGGCATATGCT+AGG - chr5_2:26301281-26301300 None:intergenic 30.0%
TCTATCAGAATGCAATAGAA+AGG - chr5_2:26301321-26301340 None:intergenic 30.0%
ATTCTGATAGATGTTGAGAA+AGG + chr5_2:26301330-26301349 Msa0765380:intron 30.0%
TTCTGATAGATGTTGAGAAA+GGG + chr5_2:26301331-26301350 Msa0765380:intron 30.0%
ACTAGATTAATTTCGATCCA+AGG - chr5_2:26301578-26301597 None:intergenic 30.0%
! CCTGTAATGACTCAATTTTA+AGG - chr5_2:26301772-26301791 None:intergenic 30.0%
CCTTAAAATTGAGTCATTAC+AGG + chr5_2:26301769-26301788 Msa0765380:intron 30.0%
TAAAATTGAGTCATTACAGG+GGG + chr5_2:26301772-26301791 Msa0765380:intron 30.0%
GTGATTGAAAGAGAAAGAAA+AGG - chr5_2:26301883-26301902 None:intergenic 30.0%
GCCAAAAAAATAAAGATAGC+GGG - chr5_2:26302317-26302336 None:intergenic 30.0%
ACATAAACATTACCATCTCA+TGG + chr5_2:26302365-26302384 Msa0765380:intron 30.0%
!! AAAATACTGCAGTTGATAAG+AGG - chr5_2:26302471-26302490 None:intergenic 30.0%
GTTGTTCAGATCATTATTGT+GGG - chr5_2:26302499-26302518 None:intergenic 30.0%
AATTCAAAAACATGCCTGAT+GGG + chr5_2:26302538-26302557 Msa0765380:CDS 30.0%
AGAAGAAGATATACTTATGC+AGG + chr5_2:26302614-26302633 Msa0765380:CDS 30.0%
AATTGCGTATAGCAAATTTC+AGG + chr5_2:26302650-26302669 Msa0765380:CDS 30.0%
ATACATAAAACTACATGACC+AGG - chr5_2:26302996-26303015 None:intergenic 30.0%
TCTCGCAAAATAGAAACAAA+AGG + chr5_2:26303055-26303074 Msa0765380:three_prime_UTR 30.0%
ATTTGCTCTTAACAGAATCT+TGG + chr5_2:26303139-26303158 Msa0765380:three_prime_UTR 30.0%
TCTTAACAGAATCTTGGTTA+AGG + chr5_2:26303145-26303164 Msa0765380:three_prime_UTR 30.0%
TGTATGAATGCTAGTTAGAT+TGG + chr5_2:26303355-26303374 Msa0765380:three_prime_UTR 30.0%
AATGTATTAGGCAAATGCTT+TGG + chr5_2:26303651-26303670 Msa0765380:three_prime_UTR 30.0%
!! AAAGCTTTGGATCAGTTTAA+GGG - chr5_2:26303679-26303698 None:intergenic 30.0%
!! AAAAGCTTTGGATCAGTTTA+AGG - chr5_2:26303680-26303699 None:intergenic 30.0%
! TTAAACTGATCCAAAGCTTT+TGG + chr5_2:26303679-26303698 Msa0765380:three_prime_UTR 30.0%
CCCATATAATGAATGACATT+AGG + chr5_2:26303741-26303760 Msa0765380:three_prime_UTR 30.0%
!!! TTTTTTTGTCTTGGATGTAG+TGG + chr5_2:26303820-26303839 Msa0765380:three_prime_UTR 30.0%
TGTTGTTGTGATTCTTCGAA+AGG - chr5_2:26298419-26298438 None:intergenic 35.0%
TGGAGAAGAGTGATTTGAAT+TGG - chr5_2:26298456-26298475 None:intergenic 35.0%
!! AGAATTGACGGATTGTTGTT+GGG - chr5_2:26298489-26298508 None:intergenic 35.0%
TGAATGAGAATTGGAATGAG+AGG + chr5_2:26298674-26298693 Msa0765380:CDS 35.0%
GAAAGGTGGGATTTATAGTT+TGG + chr5_2:26298738-26298757 Msa0765380:CDS 35.0%
AAGAAACAGAAGTTACATGC+TGG + chr5_2:26298787-26298806 Msa0765380:CDS 35.0%
AGAAACAGAAGTTACATGCT+GGG + chr5_2:26298788-26298807 Msa0765380:CDS 35.0%
TAAGGAGATTGAGAAACTTG+AGG + chr5_2:26298819-26298838 Msa0765380:CDS 35.0%
! AGACCTATTTTGCACCTTAT+AGG + chr5_2:26299096-26299115 Msa0765380:intron 35.0%
TGTCCTATAAGGTGCAAAAT+AGG - chr5_2:26299102-26299121 None:intergenic 35.0%
CTAAGCATGTATGTCCTATA+AGG - chr5_2:26299113-26299132 None:intergenic 35.0%
CTTATAGGACATACATGCTT+AGG + chr5_2:26299111-26299130 Msa0765380:intron 35.0%
!! AACACTTTGTGAGAGTGTTT+AGG + chr5_2:26299378-26299397 Msa0765380:intron 35.0%
! AGAGTGTTTAGTATAGCTCA+CGG + chr5_2:26299839-26299858 Msa0765380:intron 35.0%
GCTCTTGAAGATAGCTAATA+TGG + chr5_2:26299907-26299926 Msa0765380:intron 35.0%
ACTGAAACTTCAGATTGAAG+TGG - chr5_2:26300190-26300209 None:intergenic 35.0%
CACGTATTGTTTGTAACCAA+TGG + chr5_2:26300257-26300276 Msa0765380:intron 35.0%
! CTCGGGTAGAGTTTAAAATT+TGG + chr5_2:26300289-26300308 Msa0765380:intron 35.0%
! GGGTAGAGTTTAAAATTTGG+AGG + chr5_2:26300292-26300311 Msa0765380:intron 35.0%
! TTGGAGGCTTTTAATGTGTT+TGG + chr5_2:26300308-26300327 Msa0765380:intron 35.0%
! CATCAGTTCTAGTTAAGATG+AGG + chr5_2:26300465-26300484 Msa0765380:intron 35.0%
! TTTCCGAAGGTATATTTGAG+TGG + chr5_2:26300540-26300559 Msa0765380:intron 35.0%
CATCCACTCAAATATACCTT+CGG - chr5_2:26300546-26300565 None:intergenic 35.0%
ATTAGTGATCTGTTTCAAGG+TGG - chr5_2:26300590-26300609 None:intergenic 35.0%
ACAGATCACTAATAGAGGAT+AGG + chr5_2:26300597-26300616 Msa0765380:intron 35.0%
TCAATAATCATAGCACGCAA+TGG - chr5_2:26300962-26300981 None:intergenic 35.0%
ACTAGATATATCAGCAGACT+TGG - chr5_2:26300985-26301004 None:intergenic 35.0%
! AACTCTACTAGTGTTGAAGT+TGG + chr5_2:26301084-26301103 Msa0765380:intron 35.0%
TCAGCACTTTCATAACAAAG+TGG - chr5_2:26301191-26301210 None:intergenic 35.0%
! CAATAGAAAGGCAGTATTGA+TGG - chr5_2:26301309-26301328 None:intergenic 35.0%
CTATTTCCAAGTCTTCTCTT+CGG + chr5_2:26301822-26301841 Msa0765380:intron 35.0%
AAAGAGGAGAAACAGAAACA+GGG - chr5_2:26302023-26302042 None:intergenic 35.0%
AAAAGAGGAGAAACAGAAAC+AGG - chr5_2:26302024-26302043 None:intergenic 35.0%
!!! GCCCGCTATCTTTATTTTTT+TGG + chr5_2:26302313-26302332 Msa0765380:intron 35.0%
CGTTGTTCAGATCATTATTG+TGG - chr5_2:26302500-26302519 None:intergenic 35.0%
GAATTCAAAAACATGCCTGA+TGG + chr5_2:26302537-26302556 Msa0765380:CDS 35.0%
TACTTATGCAGGAATTCGAA+CGG + chr5_2:26302625-26302644 Msa0765380:CDS 35.0%
TCAGGTGCTTATTAAAAGAC+AGG + chr5_2:26302668-26302687 Msa0765380:intron 35.0%
TCAAGACACACATATTTAGC+CGG + chr5_2:26302799-26302818 Msa0765380:CDS 35.0%
ATGTATTTCCACCCATCAAT+TGG - chr5_2:26302831-26302850 None:intergenic 35.0%
AAATACATGATTGAGGTGGT+GGG + chr5_2:26302843-26302862 Msa0765380:CDS 35.0%
CTTCTCTTCTTTGAATGGTT+GGG - chr5_2:26302931-26302950 None:intergenic 35.0%
TCTTCTCTTCTTTGAATGGT+TGG - chr5_2:26302932-26302951 None:intergenic 35.0%
GAAGTCTTCTCTTCTTTGAA+TGG - chr5_2:26302936-26302955 None:intergenic 35.0%
! GTTTTATGTATTCTCTGCAG+AGG + chr5_2:26303005-26303024 Msa0765380:three_prime_UTR 35.0%
! TCACATTGTCATTTCCTTCA+TGG - chr5_2:26303177-26303196 None:intergenic 35.0%
!! ATGTCGCTTTAACACTTAGA+AGG + chr5_2:26303254-26303273 Msa0765380:three_prime_UTR 35.0%
TTTAGATCAAGCACAACTGA+AGG + chr5_2:26303427-26303446 Msa0765380:three_prime_UTR 35.0%
AACTGAAGGAAGCAAGTTTA+AGG + chr5_2:26303441-26303460 Msa0765380:three_prime_UTR 35.0%
TGACATAACGTATCTTCAAG+AGG + chr5_2:26303507-26303526 Msa0765380:three_prime_UTR 35.0%
GACATAACGTATCTTCAAGA+GGG + chr5_2:26303508-26303527 Msa0765380:three_prime_UTR 35.0%
TGAAACTGTAGGGTACAAAA+TGG + chr5_2:26303549-26303568 Msa0765380:three_prime_UTR 35.0%
! TGTAGGGTACAAAATGGATT+TGG + chr5_2:26303555-26303574 Msa0765380:three_prime_UTR 35.0%
ATTTGGACCTTTGTATGTGT+TGG + chr5_2:26303572-26303591 Msa0765380:three_prime_UTR 35.0%
GCACTGAGAAAGAAATAGAA+TGG + chr5_2:26303594-26303613 Msa0765380:three_prime_UTR 35.0%
TGTCATTCATTATATGGGTG+AGG - chr5_2:26303739-26303758 None:intergenic 35.0%
TGAATGACATTAGGATGCAT+AGG + chr5_2:26303750-26303769 Msa0765380:three_prime_UTR 35.0%
!! GAGAATTGACGGATTGTTGT+TGG - chr5_2:26298490-26298509 None:intergenic 40.0%
GATTGCGAGATGAGAATTGA+CGG - chr5_2:26298501-26298520 None:intergenic 40.0%
TGGAGGAGATGAATGAGAAT+TGG + chr5_2:26298665-26298684 Msa0765380:CDS 40.0%
ATGAGAATTGGAATGAGAGG+AGG + chr5_2:26298677-26298696 Msa0765380:CDS 40.0%
AATTGGAATGAGAGGAGGAA+AGG + chr5_2:26298682-26298701 Msa0765380:CDS 40.0%
ATTGGAATGAGAGGAGGAAA+GGG + chr5_2:26298683-26298702 Msa0765380:CDS 40.0%
AAACTTGAGGAGGCGAAATT+GGG + chr5_2:26298832-26298851 Msa0765380:CDS 40.0%
!! TGAAGTATTGACACAGACAC+AGG + chr5_2:26298979-26298998 Msa0765380:intron 40.0%
! AGAGTGTTTAGGATAGCTCA+TGG + chr5_2:26299389-26299408 Msa0765380:intron 40.0%
TAGCTCATGGAAACAGCTTA+TGG + chr5_2:26299402-26299421 Msa0765380:intron 40.0%
AGCTCATGGAAACAGCTTAT+GGG + chr5_2:26299403-26299422 Msa0765380:intron 40.0%
! ACAGAAAGAGCTTTATGAGC+CGG - chr5_2:26299789-26299808 None:intergenic 40.0%
CATTGTGTACATGTCATTGC+TGG - chr5_2:26300108-26300127 None:intergenic 40.0%
! AGAGCATTTAGGATCAGCAT+AGG - chr5_2:26300222-26300241 None:intergenic 40.0%
GGTTACAAACAATACGTGCT+GGG - chr5_2:26300255-26300274 None:intergenic 40.0%
TGGTTACAAACAATACGTGC+TGG - chr5_2:26300256-26300275 None:intergenic 40.0%
! AACCAATGGCTTGTGTTTCT+CGG + chr5_2:26300271-26300290 Msa0765380:intron 40.0%
TCATCGCCATCTATAACCTA+GGG - chr5_2:26300644-26300663 None:intergenic 40.0%
TTCATCGCCATCTATAACCT+AGG - chr5_2:26300645-26300664 None:intergenic 40.0%
ATGTTGAGAAAGGGTAGCAA+AGG + chr5_2:26301340-26301359 Msa0765380:intron 40.0%
ACGCACACTGAAATAGATGT+AGG + chr5_2:26301522-26301541 Msa0765380:intron 40.0%
! TTTAGAGGCTATGCCTGTTT+TGG + chr5_2:26301978-26301997 Msa0765380:intron 40.0%
CACGAAACACGAAGAAAAAG+AGG - chr5_2:26302039-26302058 None:intergenic 40.0%
! CTCTTTTTCTTCGTGTTTCG+TGG + chr5_2:26302037-26302056 Msa0765380:intron 40.0%
!! AAATAAAGATAGCGGGCTAC+CGG - chr5_2:26302310-26302329 None:intergenic 40.0%
ATGTTGTCAGTCCTGTATAG+CGG - chr5_2:26302349-26302368 None:intergenic 40.0%
ACAACTATGATGCCATGAGA+TGG - chr5_2:26302380-26302399 None:intergenic 40.0%
!! CTGCAGTTGATAAGAGGATT+AGG - chr5_2:26302465-26302484 None:intergenic 40.0%
TGGGTGGAAATACATGATTG+AGG + chr5_2:26302836-26302855 Msa0765380:CDS 40.0%
GTGGAAATACATGATTGAGG+TGG + chr5_2:26302839-26302858 Msa0765380:CDS 40.0%
GAAATACATGATTGAGGTGG+TGG + chr5_2:26302842-26302861 Msa0765380:CDS 40.0%
TCTTTGAATGGTTGGGTAGA+GGG - chr5_2:26302924-26302943 None:intergenic 40.0%
TTCTTTGAATGGTTGGGTAG+AGG - chr5_2:26302925-26302944 None:intergenic 40.0%
GATAAGAGTTACATTCCCCT+TGG + chr5_2:26302960-26302979 Msa0765380:CDS 40.0%
GGTTAAGGTTCAAACCATGA+AGG + chr5_2:26303160-26303179 Msa0765380:three_prime_UTR 40.0%
GACAATGTGATGTACTGTGT+TGG + chr5_2:26303187-26303206 Msa0765380:three_prime_UTR 40.0%
AATGTGATGTACTGTGTTGG+TGG + chr5_2:26303190-26303209 Msa0765380:three_prime_UTR 40.0%
GAAAATATTGCTGCCCAGAT+TGG - chr5_2:26303218-26303237 None:intergenic 40.0%
GCAGTATGTACAGTGAGTTA+AGG + chr5_2:26303279-26303298 Msa0765380:three_prime_UTR 40.0%
AACGTATCTTCAAGAGGGAA+AGG + chr5_2:26303513-26303532 Msa0765380:three_prime_UTR 40.0%
!! TGAGGATTTCAAGCTTTGGA+GGG - chr5_2:26303721-26303740 None:intergenic 40.0%
GTTTGGTCTAATCCTAGTGT+CGG - chr5_2:26303777-26303796 None:intergenic 40.0%
! GATTGTTGTTGGGAGTTTGG+TGG - chr5_2:26298479-26298498 None:intergenic 45.0%
! ACGGATTGTTGTTGGGAGTT+TGG - chr5_2:26298482-26298501 None:intergenic 45.0%
AAGACGAATGGAACGAAGCA+TGG + chr5_2:26298533-26298552 Msa0765380:CDS 45.0%
AGACGAATGGAACGAAGCAT+GGG + chr5_2:26298534-26298553 Msa0765380:CDS 45.0%
!! GTCTTTGGTGTTAGGTCTTG+TGG - chr5_2:26298574-26298593 None:intergenic 45.0%
AAATTCACGTCTCCTTCCCA+TGG - chr5_2:26298604-26298623 None:intergenic 45.0%
AGGAGACGTGAATTTCGCTT+CGG + chr5_2:26298609-26298628 Msa0765380:CDS 45.0%
GAATTTCGCTTCGGAAGAAG+TGG + chr5_2:26298618-26298637 Msa0765380:CDS 45.0%
GAAAGGGTTGAAGAAGGAGA+AGG + chr5_2:26298699-26298718 Msa0765380:CDS 45.0%
GTTGAAGAAGGAGAAGGTTG+AGG + chr5_2:26298705-26298724 Msa0765380:CDS 45.0%
GTTGAGGAGGAGAATGTGAA+AGG + chr5_2:26298721-26298740 Msa0765380:CDS 45.0%
AGGAGGAGAATGTGAAAGGT+GGG + chr5_2:26298725-26298744 Msa0765380:CDS 45.0%
AGAAGTTACATGCTGGGCTT+TGG + chr5_2:26298794-26298813 Msa0765380:CDS 45.0%
GGAGATTGAGAAACTTGAGG+AGG + chr5_2:26298822-26298841 Msa0765380:CDS 45.0%
GAAACTTGAGGAGGCGAAAT+TGG + chr5_2:26298831-26298850 Msa0765380:CDS 45.0%
AACTTGAGGAGGCGAAATTG+GGG + chr5_2:26298833-26298852 Msa0765380:CDS 45.0%
ATCGCATACGTGTCAGTTTC+TGG - chr5_2:26299663-26299682 None:intergenic 45.0%
! AAGAGCTTTATGAGCCGGTT+TGG - chr5_2:26299784-26299803 None:intergenic 45.0%
TGTGTACATGTCATTGCTGG+TGG - chr5_2:26300105-26300124 None:intergenic 45.0%
GATCGAATGTAACGACACGT+TGG + chr5_2:26300145-26300164 Msa0765380:intron 45.0%
ATGTAACGACACGTTGGTGT+TGG + chr5_2:26300151-26300170 Msa0765380:intron 45.0%
! TGTAACGACACGTTGGTGTT+GGG + chr5_2:26300152-26300171 Msa0765380:intron 45.0%
! ACCAATGGCTTGTGTTTCTC+GGG + chr5_2:26300272-26300291 Msa0765380:intron 45.0%
CCATCTATAACCTAGGGACT+AGG - chr5_2:26300638-26300657 None:intergenic 45.0%
CCTAGTCCCTAGGTTATAGA+TGG + chr5_2:26300635-26300654 Msa0765380:intron 45.0%
ATGTGTAGAGAAGATGTGCG+AGG + chr5_2:26300877-26300896 Msa0765380:intron 45.0%
TGAGAAAGGGTAGCAAAGGT+AGG + chr5_2:26301344-26301363 Msa0765380:intron 45.0%
CGTGTTCCAAAAGCAAGTAG+TGG + chr5_2:26301672-26301691 Msa0765380:intron 45.0%
GTTGCATTCTTGTTGCAGCA+TGG + chr5_2:26301702-26301721 Msa0765380:intron 45.0%
TTCACACCGAAGAGAAGACT+TGG - chr5_2:26301831-26301850 None:intergenic 45.0%
! AAGTCTTCTCTTCGGTGTGA+AGG + chr5_2:26301830-26301849 Msa0765380:intron 45.0%
GGGAAAGTGAAGAGTTGAGA+GGG - chr5_2:26301862-26301881 None:intergenic 45.0%
AGGGAAAGTGAAGAGTTGAG+AGG - chr5_2:26301863-26301882 None:intergenic 45.0%
GCATAGCCTCTAAACAAAGG+AGG - chr5_2:26301972-26301991 None:intergenic 45.0%
CAGGCATAGCCTCTAAACAA+AGG - chr5_2:26301975-26301994 None:intergenic 45.0%
AAACAGAGTGGCTCCAAAAC+AGG - chr5_2:26301994-26302013 None:intergenic 45.0%
!! AATAAAGATAGCGGGCTACC+GGG - chr5_2:26302309-26302328 None:intergenic 45.0%
TCAAAAACATGCCTGATGGG+TGG + chr5_2:26302541-26302560 Msa0765380:CDS 45.0%
! CAAAAACATGCCTGATGGGT+GGG + chr5_2:26302542-26302561 Msa0765380:CDS 45.0%
GATATTGTTTCCCACCCATC+AGG - chr5_2:26302555-26302574 None:intergenic 45.0%
AGACACACATATTTAGCCGG+AGG + chr5_2:26302802-26302821 Msa0765380:CDS 45.0%
AGAGTTACATTCCCCTTGGT+AGG + chr5_2:26302964-26302983 Msa0765380:CDS 45.0%
! GAGATTTTCAGCTGCCATTC+CGG - chr5_2:26303110-26303129 None:intergenic 45.0%
GGAATGGCAGCTGAAAATCT+CGG + chr5_2:26303109-26303128 Msa0765380:three_prime_UTR 45.0%
CTCAGTGCCAACACATACAA+AGG - chr5_2:26303582-26303601 None:intergenic 45.0%
GTGAGGATGACCAAAAGCTT+TGG - chr5_2:26303692-26303711 None:intergenic 45.0%
! GTGAGGATTTCAAGCTTTGG+AGG - chr5_2:26303722-26303741 None:intergenic 45.0%
TGGGTGAGGATTTCAAGCTT+TGG - chr5_2:26303725-26303744 None:intergenic 45.0%
!!! TTTTTTTTTTTTAATGTATT+AGG + chr5_2:26303639-26303658 Msa0765380:three_prime_UTR 5.0%
! TGTTGTTGGGAGTTTGGTGG+TGG - chr5_2:26298476-26298495 None:intergenic 50.0%
TCATCTCGCAATCCTCGAAG+CGG + chr5_2:26298508-26298527 Msa0765380:CDS 50.0%
!! GTGCTCGTGTCTTTGGTGTT+AGG - chr5_2:26298582-26298601 None:intergenic 50.0%
ACCAAAGACACGAGCACCAT+GGG + chr5_2:26298585-26298604 Msa0765380:CDS 50.0%
TTTCGCTTCGGAAGAAGTGG+CGG + chr5_2:26298621-26298640 Msa0765380:CDS 50.0%
GAGGAGGAAAGGGTTGAAGA+AGG + chr5_2:26298693-26298712 Msa0765380:CDS 50.0%
GAAGAAGGAGAAGGTTGAGG+AGG + chr5_2:26298708-26298727 Msa0765380:CDS 50.0%
GAGGAGGAGAATGTGAAAGG+TGG + chr5_2:26298724-26298743 Msa0765380:CDS 50.0%
!! ACATGCTGGGCTTTGGAGTA+AGG + chr5_2:26298801-26298820 Msa0765380:CDS 50.0%
ACTTGAGGAGGCGAAATTGG+GGG + chr5_2:26298834-26298853 Msa0765380:CDS 50.0%
!! AAGAGCTCTAAGAGCCTGCT+TGG - chr5_2:26299334-26299353 None:intergenic 50.0%
!! ACGTTGGTGTTGGGACATGT+CGG + chr5_2:26300161-26300180 Msa0765380:intron 50.0%
ACCCGAGAAACACAAGCCAT+TGG - chr5_2:26300276-26300295 None:intergenic 50.0%
! GAATAGCTTGCCTAGTCCCT+AGG + chr5_2:26300625-26300644 Msa0765380:intron 50.0%
AACGCAACATGGCAGTGTGA+CGG - chr5_2:26301622-26301641 None:intergenic 50.0%
CAAAAGCAAGTAGTGGTCGC+CGG + chr5_2:26301679-26301698 Msa0765380:intron 50.0%
AAAAGCAAGTAGTGGTCGCC+GGG + chr5_2:26301680-26301699 Msa0765380:intron 50.0%
GCTGCAACAAGAATGCAACC+CGG - chr5_2:26301701-26301720 None:intergenic 50.0%
AGTGAAGAGTTGAGAGGGTG+TGG - chr5_2:26301857-26301876 None:intergenic 50.0%
! TGGTTTGCACTTCACAGCAG+AGG - chr5_2:26301905-26301924 None:intergenic 50.0%
TGAAGTGCAAACCAGACGCT+GGG + chr5_2:26301911-26301930 Msa0765380:intron 50.0%
CCTCTAAACAAAGGAGGCGA+TGG - chr5_2:26301966-26301985 None:intergenic 50.0%
! CCATCGCCTCCTTTGTTTAG+AGG + chr5_2:26301963-26301982 Msa0765380:intron 50.0%
ACAGGGAGACAGAAACAGAG+TGG - chr5_2:26302006-26302025 None:intergenic 50.0%
CACACATATTTAGCCGGAGG+AGG + chr5_2:26302805-26302824 Msa0765380:CDS 50.0%
TGGGACCAAATGCCAAGAGA+GGG + chr5_2:26302862-26302881 Msa0765380:CDS 50.0%
ACCAAATGCCAAGAGAGGGA+AGG + chr5_2:26302866-26302885 Msa0765380:CDS 50.0%
CCAAATGCCAAGAGAGGGAA+GGG + chr5_2:26302867-26302886 Msa0765380:CDS 50.0%
GTAGAGGGATCAGAGAGACT+TGG - chr5_2:26302909-26302928 None:intergenic 50.0%
ACCAGGCTATCTCCTACCAA+GGG - chr5_2:26302979-26302998 None:intergenic 50.0%
TGATCACTGCAACTTTGCCG+AGG + chr5_2:26303079-26303098 Msa0765380:three_prime_UTR 50.0%
!! TGTGTTGGTGGTGCCAATCT+GGG + chr5_2:26303202-26303221 Msa0765380:three_prime_UTR 50.0%
!! TTCAAGCTTTGGAGGGCTAG+AGG - chr5_2:26303714-26303733 None:intergenic 50.0%
ACGAAGCATGGGAATCAGCG+TGG + chr5_2:26298545-26298564 Msa0765380:CDS 55.0%
CACCAAAGACACGAGCACCA+TGG + chr5_2:26298584-26298603 Msa0765380:CDS 55.0%
TCCCATGGTGCTCGTGTCTT+TGG - chr5_2:26298589-26298608 None:intergenic 55.0%
AAGACACGAGCACCATGGGA+AGG + chr5_2:26298589-26298608 Msa0765380:CDS 55.0%
CTTGAGGAGGCGAAATTGGG+GGG + chr5_2:26298835-26298854 Msa0765380:CDS 55.0%
TTGAGGAGGCGAAATTGGGG+GGG + chr5_2:26298836-26298855 Msa0765380:CDS 55.0%
! AAATTGGGGGGGTGTGGTAG+TGG + chr5_2:26298847-26298866 Msa0765380:CDS 55.0%
!! GGGGGTGTGGTAGTGGTAAT+GGG + chr5_2:26298854-26298873 Msa0765380:CDS 55.0%
!! GGGGTGTGGTAGTGGTAATG+GGG + chr5_2:26298855-26298874 Msa0765380:CDS 55.0%
ACTGCCATGTTGCGTTGCAG+TGG + chr5_2:26301626-26301645 Msa0765380:intron 55.0%
CTGCCATGTTGCGTTGCAGT+GGG + chr5_2:26301627-26301646 Msa0765380:intron 55.0%
TGGAACACGACACTGTGCGT+GGG - chr5_2:26301661-26301680 None:intergenic 55.0%
TTGGAACACGACACTGTGCG+TGG - chr5_2:26301662-26301681 None:intergenic 55.0%
! CGGCGACCACTACTTGCTTT+TGG - chr5_2:26301681-26301700 None:intergenic 55.0%
GTGAAGTGCAAACCAGACGC+TGG + chr5_2:26301910-26301929 Msa0765380:intron 55.0%
GAAGTGCAAACCAGACGCTG+GGG + chr5_2:26301912-26301931 Msa0765380:intron 55.0%
GCGATGGCAGTGGTTAGAGA+CGG - chr5_2:26301950-26301969 None:intergenic 55.0%
AACAAAGGAGGCGATGGCAG+TGG - chr5_2:26301960-26301979 None:intergenic 55.0%
! GTCAGTCCTGTATAGCGGAG+CGG - chr5_2:26302344-26302363 None:intergenic 55.0%
! ACCCATCAATTGGCCTCCTC+CGG - chr5_2:26302821-26302840 None:intergenic 55.0%
GTGGGACCAAATGCCAAGAG+AGG + chr5_2:26302861-26302880 Msa0765380:CDS 55.0%
CCCTTCCCTCTCTTGGCATT+TGG - chr5_2:26302870-26302889 None:intergenic 55.0%
AACACTGCCCTTCCCTCTCT+TGG - chr5_2:26302877-26302896 None:intergenic 55.0%
CCAGGCTATCTCCTACCAAG+GGG - chr5_2:26302978-26302997 None:intergenic 55.0%
GACCAGGCTATCTCCTACCA+AGG - chr5_2:26302980-26302999 None:intergenic 55.0%
CTCTGCAGAGGTCATTGCAG+TGG + chr5_2:26303017-26303036 Msa0765380:three_prime_UTR 55.0%
CAACTTTGCCGAGGTGTGAC+CGG + chr5_2:26303088-26303107 Msa0765380:three_prime_UTR 55.0%
!! CTGTGTTGGTGGTGCCAATC+TGG + chr5_2:26303201-26303220 Msa0765380:three_prime_UTR 55.0%
GGATGCATAGGACCGACACT+AGG + chr5_2:26303762-26303781 Msa0765380:three_prime_UTR 55.0%
CATTCGTCTTCGCCGCTTCG+AGG - chr5_2:26298523-26298542 None:intergenic 60.0%
CTCGAAGCGGCGAAGACGAA+TGG + chr5_2:26298521-26298540 Msa0765380:CDS 60.0%
!! TTCGGAAGAAGTGGCGGACG+CGG + chr5_2:26298627-26298646 Msa0765380:CDS 60.0%
!! GGAGACGAAGGCGTTTGTGG+AGG + chr5_2:26298648-26298667 Msa0765380:CDS 60.0%
!! GGGGGGTGTGGTAGTGGTAA+TGG + chr5_2:26298853-26298872 Msa0765380:CDS 60.0%
GCAACATGGCAGTGTGACGG+CGG - chr5_2:26301619-26301638 None:intergenic 60.0%
CCACCCACTGCAACGCAACA+TGG - chr5_2:26301633-26301652 None:intergenic 60.0%
CCATGTTGCGTTGCAGTGGG+TGG + chr5_2:26301630-26301649 Msa0765380:intron 60.0%
GAACACGACACTGTGCGTGG+GGG - chr5_2:26301659-26301678 None:intergenic 60.0%
GGAACACGACACTGTGCGTG+GGG - chr5_2:26301660-26301679 None:intergenic 60.0%
GGCAGTGGTTAGAGACGGCT+GGG - chr5_2:26301945-26301964 None:intergenic 60.0%
TGGCAGTGGTTAGAGACGGC+TGG - chr5_2:26301946-26301965 None:intergenic 60.0%
TTAGCGGCCATCCTGCAACC+CGG + chr5_2:26302288-26302307 Msa0765380:intron 60.0%
AGCCGGAGGAGGCCAATTGA+TGG + chr5_2:26302816-26302835 Msa0765380:CDS 60.0%
GCCGGAGGAGGCCAATTGAT+GGG + chr5_2:26302817-26302836 Msa0765380:CDS 60.0%
GGAGGAGGCCAATTGATGGG+TGG + chr5_2:26302820-26302839 Msa0765380:CDS 60.0%
CCCCTTGGTAGGAGATAGCC+TGG + chr5_2:26302975-26302994 Msa0765380:exon 60.0%
TTGCCGAGGTGTGACCGGAA+TGG + chr5_2:26303093-26303112 Msa0765380:three_prime_UTR 60.0%
CTGCCATTCCGGTCACACCT+CGG - chr5_2:26303099-26303118 None:intergenic 60.0%
!! GCTTTGGAGGGCTAGAGGTG+AGG - chr5_2:26303709-26303728 None:intergenic 60.0%
!! CGCGGAGACGAAGGCGTTTG+TGG + chr5_2:26298645-26298664 Msa0765380:CDS 65.0%
GAGGCGAAATTGGGGGGGTG+TGG + chr5_2:26298841-26298860 Msa0765380:CDS 65.0%
!! ATAGCGGGCTACCGGGTTGC+AGG - chr5_2:26302302-26302321 None:intergenic 65.0%
!! AGTGGCGGACGCGGAGACGA+AGG + chr5_2:26298636-26298655 Msa0765380:CDS 70.0%
GGGACTGAGTCCCCAGCGTC+TGG - chr5_2:26301925-26301944 None:intergenic 70.0%
CGGGCTACCGGGTTGCAGGA+TGG - chr5_2:26302298-26302317 None:intergenic 70.0%
GCTCGGCCGCTCCGCTATAC+AGG + chr5_2:26302335-26302354 Msa0765380:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 26298358 26303850 26298358 ID=Msa0765380;Name=Msa0765380
chr5_2 mRNA 26298358 26303850 26298358 ID=Msa0765380-mRNA-1;Parent=Msa0765380;Name=Msa0765380-mRNA-1;_AED=0.03;_eAED=0.03;_QI=51|1|1|1|1|1|3|858|299
chr5_2 exon 26298358 26298914 26298358 ID=Msa0765380-mRNA-1:exon:10450;Parent=Msa0765380-mRNA-1
chr5_2 exon 26302485 26302671 26302485 ID=Msa0765380-mRNA-1:exon:10451;Parent=Msa0765380-mRNA-1
chr5_2 exon 26302786 26303850 26302786 ID=Msa0765380-mRNA-1:exon:10452;Parent=Msa0765380-mRNA-1
chr5_2 five_prime_UTR 26298358 26298408 26298358 ID=Msa0765380-mRNA-1:five_prime_utr;Parent=Msa0765380-mRNA-1
chr5_2 CDS 26298409 26298914 26298409 ID=Msa0765380-mRNA-1:cds;Parent=Msa0765380-mRNA-1
chr5_2 CDS 26302485 26302671 26302485 ID=Msa0765380-mRNA-1:cds;Parent=Msa0765380-mRNA-1
chr5_2 CDS 26302786 26302992 26302786 ID=Msa0765380-mRNA-1:cds;Parent=Msa0765380-mRNA-1
chr5_2 three_prime_UTR 26302993 26303850 26302993 ID=Msa0765380-mRNA-1:three_prime_utr;Parent=Msa0765380-mRNA-1
Gene Sequence

>Msa0765380

ATGCAAACCTTTCGAAGAATCACAACAACAGCAACAAAATCAAACCAATTCAAATCACTCTTCTCCACCACCAAACTCCCAACAACAATCCGTCAATTCTCATCTCGCAATCCTCGAAGCGGCGAAGACGAATGGAACGAAGCATGGGAATCAGCGTGGTTACCACAAGACCTAACACCAAAGACACGAGCACCATGGGAAGGAGACGTGAATTTCGCTTCGGAAGAAGTGGCGGACGCGGAGACGAAGGCGTTTGTGGAGGAGATGAATGAGAATTGGAATGAGAGGAGGAAAGGGTTGAAGAAGGAGAAGGTTGAGGAGGAGAATGTGAAAGGTGGGATTTATAGTTTGGAAAATATTAAGAAGGATTATAGGTTGAAGAAACAGAAGTTACATGCTGGGCTTTGGAGTAAGGAGATTGAGAAACTTGAGGAGGCGAAATTGGGGGGGTGTGGTAGTGGTAATGGGGATGATGATATTCAGAAATTGCTTGATAGTTGTTCTGATATTTTTGACTCCCACAATAATGATCTGAACAACGCAAAAGATCCAACTTCTGAATTCAAAAACATGCCTGATGGGTGGGAAACAATATCGAAAAATCAAGATGGAAATATATGGGAGATGTCCCAAAGAGAAGAAGATATACTTATGCAGGAATTCGAACGGAGAATTGCGTATAGCAAATTTCAGATTGCAAGTTTTATCAAGACACACATATTTAGCCGGAGGAGGCCAATTGATGGGTGGAAATACATGATTGAGGTGGTGGGACCAAATGCCAAGAGAGGGAAGGGCAGTGTTTCTAGAGTACCAAGTCTCTCTGATCCCTCTACCCAACCATTCAAAGAAGAGAAGACTTCAGTTGATAAGAGTTACATTCCCCTTGGTAGGAGATAG
Protein sequence

>Msa0765380

MQTFRRITTTATKSNQFKSLFSTTKLPTTIRQFSSRNPRSGEDEWNEAWESAWLPQDLTPKTRAPWEGDVNFASEEVADAETKAFVEEMNENWNERRKGLKKEKVEEENVKGGIYSLENIKKDYRLKKQKLHAGLWSKEIEKLEEAKLGGCGSGNGDDDIQKLLDSCSDIFDSHNNDLNNAKDPTSEFKNMPDGWETISKNQDGNIWEMSQREEDILMQEFERRIAYSKFQIASFIKTHIFSRRRPIDGWKYMIEVVGPNAKRGKGSVSRVPSLSDPSTQPFKEEKTSVDKSYIPLGRR*