Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465850 | KEH32437.1 | 93.824 | 340 | 19 | 1 | 1 | 340 | 1 | 338 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465850 | A0A072US00 | 93.824 | 340 | 19 | 1 | 1 | 340 | 1 | 338 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa1465850 | 0.814188 | 1.749423e-51 | -8.615850e-47 |
| Msa0014710 | Msa1465850 | 0.824690 | 7.042678e-54 | -8.615850e-47 |
| Msa0023000 | Msa1465850 | 0.801088 | 1.062111e-48 | -8.615850e-47 |
| Msa0032860 | Msa1465850 | 0.830303 | 3.168722e-55 | -8.615850e-47 |
| Msa0032880 | Msa1465850 | 0.801096 | 1.057860e-48 | -8.615850e-47 |
| Msa0061080 | Msa1465850 | 0.815104 | 1.096850e-51 | -8.615850e-47 |
| Msa0065950 | Msa1465850 | 0.811969 | 5.365962e-51 | -8.615850e-47 |
| Msa0078900 | Msa1465850 | 0.802182 | 6.335251e-49 | -8.615850e-47 |
| Msa0085370 | Msa1465850 | 0.815770 | 7.797669e-52 | -8.615850e-47 |
| Msa0089820 | Msa1465850 | 0.802852 | 4.608919e-49 | -8.615850e-47 |
| Msa0105620 | Msa1465850 | 0.810333 | 1.214409e-50 | -8.615850e-47 |
| Msa0112770 | Msa1465850 | 0.821397 | 4.127500e-53 | -8.615850e-47 |
| Msa0114430 | Msa1465850 | 0.802897 | 4.510231e-49 | -8.615850e-47 |
| Msa1345220 | Msa1465850 | 0.804999 | 1.649771e-49 | -8.615850e-47 |
| Msa1357890 | Msa1465850 | 0.807103 | 5.951027e-50 | -8.615850e-47 |
| Msa1398090 | Msa1465850 | 0.801820 | 7.516884e-49 | -8.615850e-47 |
| Msa1400580 | Msa1465850 | 0.801693 | 7.983543e-49 | -8.615850e-47 |
| Msa1403340 | Msa1465850 | 0.807824 | 4.184618e-50 | -8.615850e-47 |
| Msa1410100 | Msa1465850 | 0.809046 | 2.296528e-50 | -8.615850e-47 |
| Msa1444310 | Msa1465850 | 0.802249 | 6.135297e-49 | -8.615850e-47 |
| Msa1458610 | Msa1465850 | 0.801818 | 7.524612e-49 | -8.615850e-47 |
| Msa1461280 | Msa1465850 | 0.804188 | 2.434852e-49 | -8.615850e-47 |
| Msa1465850 | Msa1466540 | 0.800816 | 1.206709e-48 | -8.615850e-47 |
| Msa0603540 | Msa1465850 | 0.801066 | 1.072974e-48 | -8.615850e-47 |
| Msa0609410 | Msa1465850 | -0.804898 | 1.731348e-49 | -8.615850e-47 |
| Msa0610430 | Msa1465850 | 0.801611 | 8.298819e-49 | -8.615850e-47 |
| Msa0657460 | Msa1465850 | -0.800139 | 1.657663e-48 | -8.615850e-47 |
| Msa0663390 | Msa1465850 | 0.804799 | 1.816098e-49 | -8.615850e-47 |
| Msa0673460 | Msa1465850 | 0.800309 | 1.531063e-48 | -8.615850e-47 |
| Msa0679710 | Msa1465850 | 0.802806 | 4.710347e-49 | -8.615850e-47 |
| Msa0687020 | Msa1465850 | 0.806433 | 8.247270e-50 | -8.615850e-47 |
| Msa0698540 | Msa1465850 | 0.809555 | 1.785387e-50 | -8.615850e-47 |
| Msa0716840 | Msa1465850 | 0.830516 | 2.811286e-55 | -8.615850e-47 |
| Msa0721280 | Msa1465850 | 0.801557 | 8.514083e-49 | -8.615850e-47 |
| Msa0722020 | Msa1465850 | 0.814673 | 1.366827e-51 | -8.615850e-47 |
| Msa0726830 | Msa1465850 | 0.807028 | 6.174054e-50 | -8.615850e-47 |
| Msa0747260 | Msa1465850 | 0.825987 | 3.473485e-54 | -8.615850e-47 |
| Msa0747270 | Msa1465850 | 0.818540 | 1.858925e-52 | -8.615850e-47 |
| Msa0765380 | Msa1465850 | 0.801379 | 9.258876e-49 | -8.615850e-47 |
| Msa0769980 | Msa1465850 | 0.805791 | 1.125544e-49 | -8.615850e-47 |
| Msa0777230 | Msa1465850 | 0.809774 | 1.602276e-50 | -8.615850e-47 |
| Msa0784380 | Msa1465850 | 0.839755 | 1.310853e-57 | -8.615850e-47 |
| Msa0820850 | Msa1465850 | 0.827938 | 1.186338e-54 | -8.615850e-47 |
| Msa0840820 | Msa1465850 | 0.800243 | 1.578945e-48 | -8.615850e-47 |
| Msa0144540 | Msa1465850 | 0.801383 | 9.242461e-49 | -8.615850e-47 |
| Msa0157100 | Msa1465850 | 0.801785 | 7.644043e-49 | -8.615850e-47 |
| Msa0159770 | Msa1465850 | 0.818098 | 2.340444e-52 | -8.615850e-47 |
| Msa0171540 | Msa1465850 | 0.812199 | 4.780592e-51 | -8.615850e-47 |
| Msa0178930 | Msa1465850 | 0.802187 | 6.318476e-49 | -8.615850e-47 |
| Msa0187120 | Msa1465850 | 0.804460 | 2.137536e-49 | -8.615850e-47 |
| Msa0187230 | Msa1465850 | 0.808502 | 3.000698e-50 | -8.615850e-47 |
| Msa0187250 | Msa1465850 | 0.834546 | 2.816494e-56 | -8.615850e-47 |
| Msa0189520 | Msa1465850 | 0.827453 | 1.551804e-54 | -8.615850e-47 |
| Msa0197660 | Msa1465850 | 0.808436 | 3.099585e-50 | -8.615850e-47 |
| Msa0217680 | Msa1465850 | 0.804253 | 2.360165e-49 | -8.615850e-47 |
| Msa0222620 | Msa1465850 | 0.833476 | 5.217796e-56 | -8.615850e-47 |
| Msa0229380 | Msa1465850 | 0.809425 | 1.904532e-50 | -8.615850e-47 |
| Msa0233380 | Msa1465850 | 0.805348 | 1.394066e-49 | -8.615850e-47 |
| Msa1236890 | Msa1465850 | 0.804729 | 1.878564e-49 | -8.615850e-47 |
| Msa1247250 | Msa1465850 | 0.801727 | 7.855108e-49 | -8.615850e-47 |
| Msa1254730 | Msa1465850 | 0.818174 | 2.249537e-52 | -8.615850e-47 |
| Msa1267520 | Msa1465850 | 0.803557 | 3.292855e-49 | -8.615850e-47 |
| Msa1284680 | Msa1465850 | 0.812008 | 5.261721e-51 | -8.615850e-47 |
| Msa1295110 | Msa1465850 | 0.800530 | 1.380099e-48 | -8.615850e-47 |
| Msa1298510 | Msa1465850 | 0.821839 | 3.262062e-53 | -8.615850e-47 |
| Msa1299290 | Msa1465850 | -0.808607 | 2.850797e-50 | -8.615850e-47 |
| Msa1302190 | Msa1465850 | -0.803875 | 2.829074e-49 | -8.615850e-47 |
| Msa1305190 | Msa1465850 | 0.809547 | 1.792661e-50 | -8.615850e-47 |
| Msa1305340 | Msa1465850 | 0.807494 | 4.918275e-50 | -8.615850e-47 |
| Msa1305710 | Msa1465850 | 0.800521 | 1.386314e-48 | -8.615850e-47 |
| Msa1306840 | Msa1465850 | 0.811143 | 8.112056e-51 | -8.615850e-47 |
| Msa1332040 | Msa1465850 | -0.800688 | 1.281388e-48 | -8.615850e-47 |
| Msa0369440 | Msa1465850 | 0.814619 | 1.404915e-51 | -8.615850e-47 |
| Msa0387750 | Msa1465850 | 0.805031 | 1.624089e-49 | -8.615850e-47 |
| Msa0392270 | Msa1465850 | 0.801494 | 8.768329e-49 | -8.615850e-47 |
| Msa0402790 | Msa1465850 | 0.806735 | 7.120732e-50 | -8.615850e-47 |
| Msa0405370 | Msa1465850 | 0.807755 | 4.328062e-50 | -8.615850e-47 |
| Msa0412840 | Msa1465850 | 0.809403 | 1.924960e-50 | -8.615850e-47 |
| Msa0419640 | Msa1465850 | -0.804018 | 2.641779e-49 | -8.615850e-47 |
| Msa0433640 | Msa1465850 | 0.801470 | 8.867892e-49 | -8.615850e-47 |
| Msa0442200 | Msa1465850 | 0.816376 | 5.708360e-52 | -8.615850e-47 |
| Msa0457510 | Msa1465850 | 0.808973 | 2.380778e-50 | -8.615850e-47 |
| Msa0473830 | Msa1465850 | -0.810292 | 1.239367e-50 | -8.615850e-47 |
| Msa0477130 | Msa1465850 | -0.800630 | 1.316874e-48 | -8.615850e-47 |
| Msa0481530 | Msa1465850 | 0.804051 | 2.599952e-49 | -8.615850e-47 |
| Msa1003620 | Msa1465850 | 0.800430 | 1.446837e-48 | -8.615850e-47 |
| Msa1014540 | Msa1465850 | 0.803537 | 3.324787e-49 | -8.615850e-47 |
| Msa1021540 | Msa1465850 | 0.803917 | 2.773243e-49 | -8.615850e-47 |
| Msa1046460 | Msa1465850 | 0.804014 | 2.646546e-49 | -8.615850e-47 |
| Msa1051200 | Msa1465850 | 0.804997 | 1.650728e-49 | -8.615850e-47 |
| Msa1053260 | Msa1465850 | 0.800052 | 1.726996e-48 | -8.615850e-47 |
| Msa1054550 | Msa1465850 | 0.820460 | 6.778912e-53 | -8.615850e-47 |
| Msa1075540 | Msa1465850 | 0.809851 | 1.542080e-50 | -8.615850e-47 |
| Msa1077030 | Msa1465850 | 0.804228 | 2.389639e-49 | -8.615850e-47 |
| Msa1082500 | Msa1465850 | 0.820059 | 8.378638e-53 | -8.615850e-47 |
| Msa1085300 | Msa1465850 | 0.802449 | 5.580237e-49 | -8.615850e-47 |
| Msa1091940 | Msa1465850 | 0.804929 | 1.705920e-49 | -8.615850e-47 |
| Msa1093840 | Msa1465850 | 0.803618 | 3.199644e-49 | -8.615850e-47 |
| Msa0239800 | Msa1465850 | 0.817151 | 3.826175e-52 | -8.615850e-47 |
| Msa0241470 | Msa1465850 | 0.801167 | 1.022995e-48 | -8.615850e-47 |
| Msa0255080 | Msa1465850 | 0.812026 | 5.215282e-51 | -8.615850e-47 |
| Msa0259370 | Msa1465850 | 0.811851 | 5.691713e-51 | -8.615850e-47 |
| Msa0264150 | Msa1465850 | 0.805403 | 1.357508e-49 | -8.615850e-47 |
| Msa0271360 | Msa1465850 | 0.841406 | 4.846100e-58 | -8.615850e-47 |
| Msa0271530 | Msa1465850 | 0.833047 | 6.672748e-56 | -8.615850e-47 |
| Msa0279220 | Msa1465850 | 0.806873 | 6.659091e-50 | -8.615850e-47 |
| Msa0298700 | Msa1465850 | 0.802011 | 6.868366e-49 | -8.615850e-47 |
| Msa0309750 | Msa1465850 | 0.805614 | 1.225837e-49 | -8.615850e-47 |
| Msa0309880 | Msa1465850 | 0.818399 | 2.000445e-52 | -8.615850e-47 |
| Msa0317510 | Msa1465850 | 0.814228 | 1.714267e-51 | -8.615850e-47 |
| Msa0319170 | Msa1465850 | 0.805362 | 1.384714e-49 | -8.615850e-47 |
| Msa0326480 | Msa1465850 | 0.808407 | 3.145225e-50 | -8.615850e-47 |
| Msa0326520 | Msa1465850 | 0.801596 | 8.358496e-49 | -8.615850e-47 |
| Msa0336310 | Msa1465850 | 0.805568 | 1.253418e-49 | -8.615850e-47 |
| Msa0336320 | Msa1465850 | 0.806167 | 9.382529e-50 | -8.615850e-47 |
| Msa0339250 | Msa1465850 | 0.806399 | 8.383283e-50 | -8.615850e-47 |
| Msa1116130 | Msa1465850 | -0.800646 | 1.307210e-48 | -8.615850e-47 |
| Msa1137570 | Msa1465850 | 0.820334 | 7.246032e-53 | -8.615850e-47 |
| Msa1143930 | Msa1465850 | -0.803746 | 3.008728e-49 | -8.615850e-47 |
| Msa1183100 | Msa1465850 | -0.800417 | 1.455347e-48 | -8.615850e-47 |
| Msa1190930 | Msa1465850 | 0.804610 | 1.989077e-49 | -8.615850e-47 |
| Msa1193290 | Msa1465850 | 0.811014 | 8.652766e-51 | -8.615850e-47 |
| Msa1199220 | Msa1465850 | 0.819752 | 9.848946e-53 | -8.615850e-47 |
| Msa1207270 | Msa1465850 | 0.806279 | 8.887366e-50 | -8.615850e-47 |
| Msa1210020 | Msa1465850 | 0.820675 | 6.051919e-53 | -8.615850e-47 |
| Msa1211140 | Msa1465850 | -0.810714 | 1.004653e-50 | -8.615850e-47 |
| Msa1216720 | Msa1465850 | 0.817843 | 2.672366e-52 | -8.615850e-47 |
| Msa1217430 | Msa1465850 | -0.800992 | 1.110791e-48 | -8.615850e-47 |
| Msa1217470 | Msa1465850 | 0.802110 | 6.554310e-49 | -8.615850e-47 |
| Msa1218280 | Msa1465850 | -0.800667 | 1.294434e-48 | -8.615850e-47 |
| Msa0484780 | Msa1465850 | 0.814752 | 1.313090e-51 | -8.615850e-47 |
| Msa0485120 | Msa1465850 | 0.801657 | 8.121450e-49 | -8.615850e-47 |
| Msa0488270 | Msa1465850 | 0.807418 | 5.103083e-50 | -8.615850e-47 |
| Msa0518070 | Msa1465850 | -0.811545 | 6.634374e-51 | -8.615850e-47 |
| Msa0519000 | Msa1465850 | 0.806930 | 6.475600e-50 | -8.615850e-47 |
| Msa0521540 | Msa1465850 | 0.800297 | 1.539573e-48 | -8.615850e-47 |
| Msa0555450 | Msa1465850 | 0.812765 | 3.595854e-51 | -8.615850e-47 |
| Msa0571780 | Msa1465850 | 0.816219 | 6.188853e-52 | -8.615850e-47 |
| Msa0575470 | Msa1465850 | 0.808418 | 3.128107e-50 | -8.615850e-47 |
| Msa0577500 | Msa1465850 | 0.813750 | 2.185281e-51 | -8.615850e-47 |
| Msa0585560 | Msa1465850 | 0.805777 | 1.133301e-49 | -8.615850e-47 |
| Msa0592440 | Msa1465850 | 0.808246 | 3.402575e-50 | -8.615850e-47 |
| Msa0849030 | Msa1465850 | 0.806257 | 8.981506e-50 | -8.615850e-47 |
| Msa0860900 | Msa1465850 | -0.810857 | 9.355172e-51 | -8.615850e-47 |
| Msa0861130 | Msa1465850 | 0.825420 | 4.734100e-54 | -8.615850e-47 |
| Msa0863870 | Msa1465850 | 0.805499 | 1.296236e-49 | -8.615850e-47 |
| Msa0864470 | Msa1465850 | -0.802703 | 4.945661e-49 | -8.615850e-47 |
| Msa0869120 | Msa1465850 | 0.809212 | 2.116016e-50 | -8.615850e-47 |
| Msa0876580 | Msa1465850 | 0.805624 | 1.220283e-49 | -8.615850e-47 |
| Msa0890550 | Msa1465850 | 0.808491 | 3.017531e-50 | -8.615850e-47 |
| Msa0909010 | Msa1465850 | 0.801412 | 9.115674e-49 | -8.615850e-47 |
| Msa0930140 | Msa1465850 | 0.803502 | 3.381356e-49 | -8.615850e-47 |
| Msa0942560 | Msa1465850 | -0.809931 | 1.482776e-50 | -8.615850e-47 |
| Msa0962840 | Msa1465850 | 0.805315 | 1.416603e-49 | -8.615850e-47 |
| Msa0970030 | Msa1465850 | 0.800520 | 1.386679e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465850 | MtrunA17_Chr4g0070461 | 76.768 | 297 | 68 | 1 | 41 | 336 | 15 | 311 | 3.09e-171 | 478 |
| Msa1465850 | MtrunA17_Chr8g0355651 | 74.747 | 297 | 74 | 1 | 41 | 336 | 11 | 307 | 3.19e-162 | 455 |
| Msa1465850 | MtrunA17_Chr8g0355671 | 73.737 | 297 | 76 | 2 | 41 | 335 | 11 | 307 | 3.30e-161 | 452 |
| Msa1465850 | MtrunA17_Chr2g0327301 | 66.667 | 297 | 97 | 2 | 41 | 335 | 11 | 307 | 2.87e-144 | 410 |
| Msa1465850 | MtrunA17_Chr4g0043541 | 32.026 | 306 | 181 | 6 | 28 | 316 | 1 | 296 | 2.67e-45 | 156 |
| Msa1465850 | MtrunA17_Chr3g0137871 | 32.759 | 290 | 162 | 8 | 42 | 313 | 7 | 281 | 1.09e-41 | 146 |
| Msa1465850 | MtrunA17_Chr1g0170221 | 30.696 | 316 | 164 | 10 | 46 | 316 | 27 | 332 | 1.20e-36 | 135 |
| Msa1465850 | MtrunA17_Chr1g0204661 | 29.448 | 326 | 165 | 11 | 46 | 316 | 27 | 342 | 1.74e-28 | 113 |
| Msa1465850 | MtrunA17_Chr1g0147031 | 28.992 | 238 | 136 | 8 | 46 | 270 | 27 | 244 | 4.15e-21 | 91.3 |
| Msa1465850 | MtrunA17_Chr4g0070471 | 97.561 | 41 | 1 | 0 | 1 | 41 | 1 | 41 | 2.48e-19 | 84.7 |
| Msa1465850 | MtrunA17_Chr7g0226651 | 26.068 | 234 | 146 | 9 | 41 | 255 | 22 | 247 | 9.96e-19 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465850 | AT1G64870.1 | 32.542 | 295 | 161 | 6 | 47 | 313 | 12 | 296 | 1.07e-43 | 152 |
| Msa1465850 | AT3G45200.1 | 31.788 | 302 | 162 | 8 | 43 | 313 | 8 | 296 | 2.83e-39 | 141 |
| Msa1465850 | AT5G13620.1 | 31.228 | 285 | 177 | 6 | 41 | 316 | 12 | 286 | 9.98e-36 | 132 |
| Msa1465850 | AT1G49290.1 | 29.642 | 307 | 185 | 6 | 41 | 316 | 21 | 327 | 1.96e-35 | 132 |
| Msa1465850 | AT5G11220.1 | 31.136 | 273 | 150 | 8 | 73 | 317 | 1 | 263 | 1.44e-32 | 122 |
| Msa1465850 | AT5G24355.1 | 37.864 | 103 | 51 | 3 | 223 | 312 | 8 | 110 | 2.85e-14 | 68.9 |
Find 68 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGTAGGGTTATGCTTTC+TGG | 0.203600 | tig0045653:-1696 | Msa1465850:CDS |
| GAGACTTCTGGTTCTGGTTC+TGG | 0.206223 | tig0045653:-1672 | Msa1465850:CDS |
| CAAATTCCGTAAAGAAATTC+AGG | 0.216585 | tig0045653:-2950 | Msa1465850:CDS |
| CAGAAGATGATATTGCAATT+AGG | 0.258072 | tig0045653:+2294 | Msa1465850:intergenic |
| GAACACCCTGAATTTCTTTA+CGG | 0.280424 | tig0045653:+2944 | Msa1465850:intergenic |
| TTCGGTTCGTTTGGGATTGC+TGG | 0.281176 | tig0045653:-2041 | Msa1465850:CDS |
| ATGCTTTCTGGAGAGACTTC+TGG | 0.290881 | tig0045653:-1684 | Msa1465850:CDS |
| GAGAAATTTCGTTGTCCATT+AGG | 0.294131 | tig0045653:+2243 | Msa1465850:intergenic |
| TCTGGAGAGACTTCTGGTTC+TGG | 0.303709 | tig0045653:-1678 | Msa1465850:CDS |
| AGAAGATGATATTGCAATTA+GGG | 0.303963 | tig0045653:+2295 | Msa1465850:intergenic |
| AAAAGTGATTGTTCATTTGA+TGG | 0.317301 | tig0045653:+1843 | Msa1465850:intergenic |
| ATGTCATTGATCAAATTAAT+AGG | 0.317845 | tig0045653:+2371 | Msa1465850:intergenic |
| ATCTGCTGTTCGGTTCGTTT+GGG | 0.328045 | tig0045653:-2049 | Msa1465850:CDS |
| GATCTGCTGTTCGGTTCGTT+TGG | 0.336612 | tig0045653:-2050 | Msa1465850:CDS |
| GAAGATTGTATGAGTTCATT+TGG | 0.350296 | tig0045653:-2161 | Msa1465850:CDS |
| TGTAAAGTTCTCTGTCCATT+TGG | 0.373412 | tig0045653:+2510 | Msa1465850:intergenic |
| TCCACTGCTTCAAAGCCTAA+TGG | 0.399611 | tig0045653:-2258 | Msa1465850:CDS |
| GATTGCTTGCTATGTGGCTT+TGG | 0.406196 | tig0045653:-2442 | Msa1465850:CDS |
| GAATCATACCGGCGGATGAT+AGG | 0.408841 | tig0045653:-1977 | Msa1465850:CDS |
| AACTCATCCCACGAAGTTGC+AGG | 0.415261 | tig0045653:+3009 | Msa1465850:intergenic |
| CTACCAGTGTTTGCTCTCTT+CGG | 0.421342 | tig0045653:+1711 | Msa1465850:intergenic |
| TATTCTTCTGTTCCACCAAA+TGG | 0.422830 | tig0045653:-2525 | Msa1465850:CDS |
| ATTGATTGAAAATTTGACTT+TGG | 0.427230 | tig0045653:+1764 | Msa1465850:intergenic |
| CTCGAACTCGAACGTGGAAG+AGG | 0.429346 | tig0045653:-3034 | Msa1465850:CDS |
| ATTTGGTGACATCATGCAAC+AGG | 0.443786 | tig0045653:-2144 | Msa1465850:CDS |
| CTATTCTCAATAAAGAATCT+TGG | 0.450907 | tig0045653:+2221 | Msa1465850:intergenic |
| GCTTGCTATGTGGCTTTGGT+TGG | 0.457925 | tig0045653:-2438 | Msa1465850:CDS |
| CCATTGTTGTTGCTCTGTTG+TGG | 0.461056 | tig0045653:+2008 | Msa1465850:intergenic |
| GAGGGTATCGTGTTGAAGAA+TGG | 0.465093 | tig0045653:-1932 | Msa1465850:CDS |
| GGACCAGTGGATCTGCTGTT+CGG | 0.471536 | tig0045653:-2059 | Msa1465850:CDS |
| AAAGTTCTCTGTCCATTTGG+TGG | 0.471759 | tig0045653:+2513 | Msa1465850:intergenic |
| TCCATTAGGCTTTGAAGCAG+TGG | 0.475063 | tig0045653:+2257 | Msa1465850:intergenic |
| AGGGTATCGTGTTGAAGAAT+GGG | 0.488194 | tig0045653:-1931 | Msa1465850:CDS |
| AATAGTGAGCAAGCGATTGA+AGG | 0.502910 | tig0045653:-2203 | Msa1465850:CDS |
| GAGAAACTTAGCGGAGAGAA+TGG | 0.524208 | tig0045653:-2114 | Msa1465850:CDS |
| GTTTGGTTCGATTGGACCAG+TGG | 0.530146 | tig0045653:-2072 | Msa1465850:CDS |
| TGAGCAAGCGATTGAAGGGA+TGG | 0.539797 | tig0045653:-2198 | Msa1465850:CDS |
| AAGAGGAACCTGCAACTTCG+TGG | 0.540479 | tig0045653:-3017 | Msa1465850:CDS |
| CGAAGAGAGCAAACACTGGT+AGG | 0.541081 | tig0045653:-1710 | Msa1465850:CDS |
| CCATGCGATTGCTTGCTATG+TGG | 0.545108 | tig0045653:-2448 | Msa1465850:CDS |
| CAATCAATGGGAAACATGTG+TGG | 0.545409 | tig0045653:-1749 | Msa1465850:CDS |
| ATAGTGAGCAAGCGATTGAA+GGG | 0.553764 | tig0045653:-2202 | Msa1465850:CDS |
| CTATTGATATGATTCTGAGA+GGG | 0.563731 | tig0045653:-1791 | Msa1465850:CDS |
| AGCAAGCAATCGCATGGAGT+CGG | 0.568061 | tig0045653:+2454 | Msa1465850:intergenic |
| CGTGAGAAAGATTAGTGACA+AGG | 0.571657 | tig0045653:+2483 | Msa1465850:intergenic |
| GGTTCTGGTTCTGGTTCTCG+AGG | 0.573928 | tig0045653:-1663 | Msa1465850:CDS |
| CCACATAGCAAGCAATCGCA+TGG | 0.578819 | tig0045653:+2448 | Msa1465850:intergenic |
| GAACCGAACAGCAGATCCAC+TGG | 0.579087 | tig0045653:+2056 | Msa1465850:intergenic |
| CAGAGCAACAACAATGGAGA+TGG | 0.583391 | tig0045653:-2002 | Msa1465850:CDS |
| GGTGATGTTGAGAAACTTAG+CGG | 0.586804 | tig0045653:-2123 | Msa1465850:CDS |
| AGCAACAACAATGGAGATGG+AGG | 0.586840 | tig0045653:-1999 | Msa1465850:CDS |
| AAATTCCGTAAAGAAATTCA+GGG | 0.598934 | tig0045653:-2949 | Msa1465850:intron |
| GGCTTATGGAGATTGCATTG+AGG | 0.600296 | tig0045653:-1886 | Msa1465850:CDS |
| TATTGATATGATTCTGAGAG+GGG | 0.605977 | tig0045653:-1790 | Msa1465850:CDS |
| TTCGAACTCGAACTCGAACG+TGG | 0.606906 | tig0045653:-3040 | Msa1465850:CDS |
| GAAGAGAGCAAACACTGGTA+GGG | 0.607379 | tig0045653:-1709 | Msa1465850:CDS |
| GAGACAAATCATCGATTCAA+CGG | 0.608578 | tig0045653:+2346 | Msa1465850:intergenic |
| AGAGGAACCTGCAACTTCGT+GGG | 0.608732 | tig0045653:-3016 | Msa1465850:CDS |
| TGGAGATGGAGGAATCATAC+CGG | 0.617997 | tig0045653:-1988 | Msa1465850:CDS |
| AATTTGAGAAATAACTCAGA+AGG | 0.628478 | tig0045653:+2967 | Msa1465850:intergenic |
| AATAATGTCCTATCATCCGC+CGG | 0.632345 | tig0045653:+1969 | Msa1465850:intergenic |
| AATCAATGGGAAACATGTGT+GGG | 0.636822 | tig0045653:-1748 | Msa1465850:CDS |
| AGCAATCGCATGGAGTCGGA+AGG | 0.641433 | tig0045653:+2458 | Msa1465850:intergenic |
| CCACAACAGAGCAACAACAA+TGG | 0.642923 | tig0045653:-2008 | Msa1465850:CDS |
| ACTATTGATATGATTCTGAG+AGG | 0.654499 | tig0045653:-1792 | Msa1465850:CDS |
| GTTCCGAAGAGAGCAAACAC+TGG | 0.665833 | tig0045653:-1714 | Msa1465850:CDS |
| AAACTTAGCGGAGAGAATGG+CGG | 0.683089 | tig0045653:-2111 | Msa1465850:CDS |
| AGATGGAGGAATCATACCGG+CGG | 0.734758 | tig0045653:-1985 | Msa1465850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAGTAATAGAGAAAAATT+GGG | + | tig0045653:1818-1837 | Msa1465850:intergenic | 20.0% |
| !! | TGAAAGTAATAGAGAAAAAT+TGG | + | tig0045653:1819-1838 | Msa1465850:intergenic | 20.0% |
| !! | ATGTCATTGATCAAATTAAT+AGG | + | tig0045653:2336-2355 | Msa1465850:intergenic | 20.0% |
| !!! | AGTTCAAGAATTTTTTACTA+TGG | - | tig0045653:2797-2816 | Msa1465850:intron | 20.0% |
| !!! | ATTGATTGAAAATTTGACTT+TGG | + | tig0045653:2943-2962 | Msa1465850:intergenic | 20.0% |
| !!! | AAAGTCAAATTTTCAATCAA+TGG | - | tig0045653:2942-2961 | Msa1465850:intron | 20.0% |
| !!! | AAGTCAAATTTTCAATCAAT+GGG | - | tig0045653:2943-2962 | Msa1465850:intron | 20.0% |
| !! | GAAAGTAATAGAGAAAAATT+GGG | + | tig0045653:1818-1837 | Msa1465850:intergenic | 20.0% |
| !! | TGAAAGTAATAGAGAAAAAT+TGG | + | tig0045653:1819-1838 | Msa1465850:intergenic | 20.0% |
| !! | ATGTCATTGATCAAATTAAT+AGG | + | tig0045653:2336-2355 | Msa1465850:intergenic | 20.0% |
| !!! | AGTTCAAGAATTTTTTACTA+TGG | - | tig0045653:2797-2816 | Msa1465850:intron | 20.0% |
| !!! | ATTGATTGAAAATTTGACTT+TGG | + | tig0045653:2943-2962 | Msa1465850:intergenic | 20.0% |
| !!! | AAAGTCAAATTTTCAATCAA+TGG | - | tig0045653:2942-2961 | Msa1465850:intron | 20.0% |
| !!! | AAGTCAAATTTTCAATCAAT+GGG | - | tig0045653:2943-2962 | Msa1465850:intron | 20.0% |
| ! | AATTTGAGAAATAACTCAGA+AGG | + | tig0045653:1740-1759 | Msa1465850:intergenic | 25.0% |
| ! | AAATTCCGTAAAGAAATTCA+GGG | - | tig0045653:1755-1774 | Msa1465850:CDS | 25.0% |
| ! | ACATTACATTACATAGTTTC+CGG | - | tig0045653:2085-2104 | Msa1465850:CDS | 25.0% |
| ! | TTGTTTCATGTTTCCTTAAA+CGG | - | tig0045653:2122-2141 | Msa1465850:CDS | 25.0% |
| ! | AGAAGATGATATTGCAATTA+GGG | + | tig0045653:2412-2431 | Msa1465850:intergenic | 25.0% |
| ! | CTATTCTCAATAAAGAATCT+TGG | + | tig0045653:2486-2505 | Msa1465850:intergenic | 25.0% |
| !!! | GAATTTTTTACTATGGCTTA+TGG | - | tig0045653:2804-2823 | Msa1465850:intron | 25.0% |
| ! | AAAAGTGATTGTTCATTTGA+TGG | + | tig0045653:2864-2883 | Msa1465850:intergenic | 25.0% |
| ! | AATTTGAGAAATAACTCAGA+AGG | + | tig0045653:1740-1759 | Msa1465850:intergenic | 25.0% |
| ! | AAATTCCGTAAAGAAATTCA+GGG | - | tig0045653:1755-1774 | Msa1465850:CDS | 25.0% |
| ! | ACATTACATTACATAGTTTC+CGG | - | tig0045653:2085-2104 | Msa1465850:CDS | 25.0% |
| ! | TTGTTTCATGTTTCCTTAAA+CGG | - | tig0045653:2122-2141 | Msa1465850:CDS | 25.0% |
| ! | AGAAGATGATATTGCAATTA+GGG | + | tig0045653:2412-2431 | Msa1465850:intergenic | 25.0% |
| ! | CTATTCTCAATAAAGAATCT+TGG | + | tig0045653:2486-2505 | Msa1465850:intergenic | 25.0% |
| !!! | GAATTTTTTACTATGGCTTA+TGG | - | tig0045653:2804-2823 | Msa1465850:intron | 25.0% |
| ! | AAAAGTGATTGTTCATTTGA+TGG | + | tig0045653:2864-2883 | Msa1465850:intergenic | 25.0% |
| CAAATTCCGTAAAGAAATTC+AGG | - | tig0045653:1754-1773 | Msa1465850:CDS | 30.0% | |
| AGTAATAGAGAAAAATTGGG+AGG | + | tig0045653:1815-1834 | Msa1465850:intergenic | 30.0% | |
| AACAACGTCTGTGTTAATTA+GGG | + | tig0045653:1901-1920 | Msa1465850:intergenic | 30.0% | |
| TAACAACGTCTGTGTTAATT+AGG | + | tig0045653:1902-1921 | Msa1465850:intergenic | 30.0% | |
| !! | TTTTGAGTGAGTTCGTAAAT+GGG | + | tig0045653:1998-2017 | Msa1465850:intergenic | 30.0% |
| !!! | TTTTTGAGTGAGTTCGTAAA+TGG | + | tig0045653:1999-2018 | Msa1465850:intergenic | 30.0% |
| AACAATGCTATGTTCAATTC+CGG | + | tig0045653:2107-2126 | Msa1465850:intergenic | 30.0% | |
| ! | GTTTTCGTAATGTTATCGAA+AGG | - | tig0045653:2298-2317 | Msa1465850:CDS | 30.0% |
| CAGAAGATGATATTGCAATT+AGG | + | tig0045653:2413-2432 | Msa1465850:intergenic | 30.0% | |
| GAAGATTGTATGAGTTCATT+TGG | - | tig0045653:2543-2562 | Msa1465850:intron | 30.0% | |
| !!! | GATTTTTTGTTTGGTTCGAT+TGG | - | tig0045653:2624-2643 | Msa1465850:intron | 30.0% |
| !! | TTATTTGTGACATTTTCGAG+AGG | - | tig0045653:2753-2772 | Msa1465850:intron | 30.0% |
| !! | TATTTGTGACATTTTCGAGA+GGG | - | tig0045653:2754-2773 | Msa1465850:intron | 30.0% |
| ACTATTGATATGATTCTGAG+AGG | - | tig0045653:2912-2931 | Msa1465850:intron | 30.0% | |
| ! | CTATTGATATGATTCTGAGA+GGG | - | tig0045653:2913-2932 | Msa1465850:intron | 30.0% |
| ! | TATTGATATGATTCTGAGAG+GGG | - | tig0045653:2914-2933 | Msa1465850:intron | 30.0% |
| CAAATTCCGTAAAGAAATTC+AGG | - | tig0045653:1754-1773 | Msa1465850:CDS | 30.0% | |
| AGTAATAGAGAAAAATTGGG+AGG | + | tig0045653:1815-1834 | Msa1465850:intergenic | 30.0% | |
| AACAACGTCTGTGTTAATTA+GGG | + | tig0045653:1901-1920 | Msa1465850:intergenic | 30.0% | |
| TAACAACGTCTGTGTTAATT+AGG | + | tig0045653:1902-1921 | Msa1465850:intergenic | 30.0% | |
| !! | TTTTGAGTGAGTTCGTAAAT+GGG | + | tig0045653:1998-2017 | Msa1465850:intergenic | 30.0% |
| !!! | TTTTTGAGTGAGTTCGTAAA+TGG | + | tig0045653:1999-2018 | Msa1465850:intergenic | 30.0% |
| AACAATGCTATGTTCAATTC+CGG | + | tig0045653:2107-2126 | Msa1465850:intergenic | 30.0% | |
| ! | GTTTTCGTAATGTTATCGAA+AGG | - | tig0045653:2298-2317 | Msa1465850:CDS | 30.0% |
| CAGAAGATGATATTGCAATT+AGG | + | tig0045653:2413-2432 | Msa1465850:intergenic | 30.0% | |
| GAAGATTGTATGAGTTCATT+TGG | - | tig0045653:2543-2562 | Msa1465850:intron | 30.0% | |
| !!! | GATTTTTTGTTTGGTTCGAT+TGG | - | tig0045653:2624-2643 | Msa1465850:intron | 30.0% |
| !! | TTATTTGTGACATTTTCGAG+AGG | - | tig0045653:2753-2772 | Msa1465850:intron | 30.0% |
| !! | TATTTGTGACATTTTCGAGA+GGG | - | tig0045653:2754-2773 | Msa1465850:intron | 30.0% |
| ACTATTGATATGATTCTGAG+AGG | - | tig0045653:2912-2931 | Msa1465850:intron | 30.0% | |
| ! | CTATTGATATGATTCTGAGA+GGG | - | tig0045653:2913-2932 | Msa1465850:intron | 30.0% |
| ! | TATTGATATGATTCTGAGAG+GGG | - | tig0045653:2914-2933 | Msa1465850:intron | 30.0% |
| GAACACCCTGAATTTCTTTA+CGG | + | tig0045653:1763-1782 | Msa1465850:intergenic | 35.0% | |
| TATTCTTCTGTTCCACCAAA+TGG | - | tig0045653:2179-2198 | Msa1465850:CDS | 35.0% | |
| TGTAAAGTTCTCTGTCCATT+TGG | + | tig0045653:2197-2216 | Msa1465850:intergenic | 35.0% | |
| !! | GAGACAAATCATCGATTCAA+CGG | + | tig0045653:2361-2380 | Msa1465850:intergenic | 35.0% |
| GAGAAATTTCGTTGTCCATT+AGG | + | tig0045653:2464-2483 | Msa1465850:intergenic | 35.0% | |
| AATCAATGGGAAACATGTGT+GGG | - | tig0045653:2956-2975 | Msa1465850:CDS | 35.0% | |
| GAACACCCTGAATTTCTTTA+CGG | + | tig0045653:1763-1782 | Msa1465850:intergenic | 35.0% | |
| TATTCTTCTGTTCCACCAAA+TGG | - | tig0045653:2179-2198 | Msa1465850:CDS | 35.0% | |
| TGTAAAGTTCTCTGTCCATT+TGG | + | tig0045653:2197-2216 | Msa1465850:intergenic | 35.0% | |
| !! | GAGACAAATCATCGATTCAA+CGG | + | tig0045653:2361-2380 | Msa1465850:intergenic | 35.0% |
| GAGAAATTTCGTTGTCCATT+AGG | + | tig0045653:2464-2483 | Msa1465850:intergenic | 35.0% | |
| AATCAATGGGAAACATGTGT+GGG | - | tig0045653:2956-2975 | Msa1465850:CDS | 35.0% | |
| ! | TGTTCGTGTTGCTCTCAATA+TGG | - | tig0045653:1778-1797 | Msa1465850:CDS | 40.0% |
| TAGTGAAGAGTCACGACTAT+TGG | + | tig0045653:2057-2076 | Msa1465850:intergenic | 40.0% | |
| GAAAGTGGAGAATCCGTTTA+AGG | + | tig0045653:2138-2157 | Msa1465850:intergenic | 40.0% | |
| CGAGAAACAGTGAAAGAAAG+TGG | + | tig0045653:2153-2172 | Msa1465850:intergenic | 40.0% | |
| AAAGTTCTCTGTCCATTTGG+TGG | + | tig0045653:2194-2213 | Msa1465850:intergenic | 40.0% | |
| CGTGAGAAAGATTAGTGACA+AGG | + | tig0045653:2224-2243 | Msa1465850:intergenic | 40.0% | |
| !! | TGGCTTTGGTTGGAAAAAGT+TGG | - | tig0045653:2276-2295 | Msa1465850:CDS | 40.0% |
| AATAGTGAGCAAGCGATTGA+AGG | - | tig0045653:2501-2520 | Msa1465850:CDS | 40.0% | |
| ATAGTGAGCAAGCGATTGAA+GGG | - | tig0045653:2502-2521 | Msa1465850:CDS | 40.0% | |
| ! | ATTTGGTGACATCATGCAAC+AGG | - | tig0045653:2560-2579 | Msa1465850:intron | 40.0% |
| GGTGATGTTGAGAAACTTAG+CGG | - | tig0045653:2581-2600 | Msa1465850:intron | 40.0% | |
| !!! | GAGCACAGCGATTTTTTGTT+TGG | - | tig0045653:2615-2634 | Msa1465850:intron | 40.0% |
| AATAATGTCCTATCATCCGC+CGG | + | tig0045653:2738-2757 | Msa1465850:intergenic | 40.0% | |
| !! | AGGGTATCGTGTTGAAGAAT+GGG | - | tig0045653:2773-2792 | Msa1465850:intron | 40.0% |
| CAATCAATGGGAAACATGTG+TGG | - | tig0045653:2955-2974 | Msa1465850:CDS | 40.0% | |
| ! | TGTTCGTGTTGCTCTCAATA+TGG | - | tig0045653:1778-1797 | Msa1465850:CDS | 40.0% |
| TAGTGAAGAGTCACGACTAT+TGG | + | tig0045653:2057-2076 | Msa1465850:intergenic | 40.0% | |
| GAAAGTGGAGAATCCGTTTA+AGG | + | tig0045653:2138-2157 | Msa1465850:intergenic | 40.0% | |
| CGAGAAACAGTGAAAGAAAG+TGG | + | tig0045653:2153-2172 | Msa1465850:intergenic | 40.0% | |
| AAAGTTCTCTGTCCATTTGG+TGG | + | tig0045653:2194-2213 | Msa1465850:intergenic | 40.0% | |
| CGTGAGAAAGATTAGTGACA+AGG | + | tig0045653:2224-2243 | Msa1465850:intergenic | 40.0% | |
| !! | TGGCTTTGGTTGGAAAAAGT+TGG | - | tig0045653:2276-2295 | Msa1465850:CDS | 40.0% |
| AATAGTGAGCAAGCGATTGA+AGG | - | tig0045653:2501-2520 | Msa1465850:CDS | 40.0% | |
| ATAGTGAGCAAGCGATTGAA+GGG | - | tig0045653:2502-2521 | Msa1465850:CDS | 40.0% | |
| ! | ATTTGGTGACATCATGCAAC+AGG | - | tig0045653:2560-2579 | Msa1465850:intron | 40.0% |
| GGTGATGTTGAGAAACTTAG+CGG | - | tig0045653:2581-2600 | Msa1465850:intron | 40.0% | |
| !!! | GAGCACAGCGATTTTTTGTT+TGG | - | tig0045653:2615-2634 | Msa1465850:intron | 40.0% |
| AATAATGTCCTATCATCCGC+CGG | + | tig0045653:2738-2757 | Msa1465850:intergenic | 40.0% | |
| !! | AGGGTATCGTGTTGAAGAAT+GGG | - | tig0045653:2773-2792 | Msa1465850:intron | 40.0% |
| CAATCAATGGGAAACATGTG+TGG | - | tig0045653:2955-2974 | Msa1465850:CDS | 40.0% | |
| ! | TCGTGTTGCTCTCAATATGG+AGG | - | tig0045653:1781-1800 | Msa1465850:CDS | 45.0% |
| !! | GATTGCTTGCTATGTGGCTT+TGG | - | tig0045653:2262-2281 | Msa1465850:CDS | 45.0% |
| TCCACTGCTTCAAAGCCTAA+TGG | - | tig0045653:2446-2465 | Msa1465850:CDS | 45.0% | |
| !! | TCCATTAGGCTTTGAAGCAG+TGG | + | tig0045653:2450-2469 | Msa1465850:intergenic | 45.0% |
| GAGAAACTTAGCGGAGAGAA+TGG | - | tig0045653:2590-2609 | Msa1465850:intron | 45.0% | |
| AAACTTAGCGGAGAGAATGG+CGG | - | tig0045653:2593-2612 | Msa1465850:intron | 45.0% | |
| ! | ATCTGCTGTTCGGTTCGTTT+GGG | - | tig0045653:2655-2674 | Msa1465850:intron | 45.0% |
| ! | CCATTGTTGTTGCTCTGTTG+TGG | + | tig0045653:2699-2718 | Msa1465850:intergenic | 45.0% |
| CCACAACAGAGCAACAACAA+TGG | - | tig0045653:2696-2715 | Msa1465850:intron | 45.0% | |
| CAGAGCAACAACAATGGAGA+TGG | - | tig0045653:2702-2721 | Msa1465850:intron | 45.0% | |
| AGCAACAACAATGGAGATGG+AGG | - | tig0045653:2705-2724 | Msa1465850:intron | 45.0% | |
| TGGAGATGGAGGAATCATAC+CGG | - | tig0045653:2716-2735 | Msa1465850:intron | 45.0% | |
| !! | GAGGGTATCGTGTTGAAGAA+TGG | - | tig0045653:2772-2791 | Msa1465850:intron | 45.0% |
| GGCTTATGGAGATTGCATTG+AGG | - | tig0045653:2818-2837 | Msa1465850:intron | 45.0% | |
| CTACCAGTGTTTGCTCTCTT+CGG | + | tig0045653:2996-3015 | Msa1465850:intergenic | 45.0% | |
| GAAGAGAGCAAACACTGGTA+GGG | - | tig0045653:2995-3014 | Msa1465850:CDS | 45.0% | |
| ACTGGTAGGGTTATGCTTTC+TGG | - | tig0045653:3008-3027 | Msa1465850:CDS | 45.0% | |
| ! | ATGCTTTCTGGAGAGACTTC+TGG | - | tig0045653:3020-3039 | Msa1465850:CDS | 45.0% |
| ! | TCGTGTTGCTCTCAATATGG+AGG | - | tig0045653:1781-1800 | Msa1465850:CDS | 45.0% |
| !! | GATTGCTTGCTATGTGGCTT+TGG | - | tig0045653:2262-2281 | Msa1465850:CDS | 45.0% |
| TCCACTGCTTCAAAGCCTAA+TGG | - | tig0045653:2446-2465 | Msa1465850:CDS | 45.0% | |
| !! | TCCATTAGGCTTTGAAGCAG+TGG | + | tig0045653:2450-2469 | Msa1465850:intergenic | 45.0% |
| GAGAAACTTAGCGGAGAGAA+TGG | - | tig0045653:2590-2609 | Msa1465850:intron | 45.0% | |
| AAACTTAGCGGAGAGAATGG+CGG | - | tig0045653:2593-2612 | Msa1465850:intron | 45.0% | |
| ! | ATCTGCTGTTCGGTTCGTTT+GGG | - | tig0045653:2655-2674 | Msa1465850:intron | 45.0% |
| ! | CCATTGTTGTTGCTCTGTTG+TGG | + | tig0045653:2699-2718 | Msa1465850:intergenic | 45.0% |
| CCACAACAGAGCAACAACAA+TGG | - | tig0045653:2696-2715 | Msa1465850:intron | 45.0% | |
| CAGAGCAACAACAATGGAGA+TGG | - | tig0045653:2702-2721 | Msa1465850:intron | 45.0% | |
| AGCAACAACAATGGAGATGG+AGG | - | tig0045653:2705-2724 | Msa1465850:intron | 45.0% | |
| TGGAGATGGAGGAATCATAC+CGG | - | tig0045653:2716-2735 | Msa1465850:intron | 45.0% | |
| !! | GAGGGTATCGTGTTGAAGAA+TGG | - | tig0045653:2772-2791 | Msa1465850:intron | 45.0% |
| GGCTTATGGAGATTGCATTG+AGG | - | tig0045653:2818-2837 | Msa1465850:intron | 45.0% | |
| CTACCAGTGTTTGCTCTCTT+CGG | + | tig0045653:2996-3015 | Msa1465850:intergenic | 45.0% | |
| GAAGAGAGCAAACACTGGTA+GGG | - | tig0045653:2995-3014 | Msa1465850:CDS | 45.0% | |
| ACTGGTAGGGTTATGCTTTC+TGG | - | tig0045653:3008-3027 | Msa1465850:CDS | 45.0% | |
| ! | ATGCTTTCTGGAGAGACTTC+TGG | - | tig0045653:3020-3039 | Msa1465850:CDS | 45.0% |
| TTCGAACTCGAACTCGAACG+TGG | - | tig0045653:1664-1683 | Msa1465850:CDS | 50.0% | |
| AAGAGGAACCTGCAACTTCG+TGG | - | tig0045653:1687-1706 | Msa1465850:CDS | 50.0% | |
| AGAGGAACCTGCAACTTCGT+GGG | - | tig0045653:1688-1707 | Msa1465850:CDS | 50.0% | |
| AACTCATCCCACGAAGTTGC+AGG | + | tig0045653:1698-1717 | Msa1465850:intergenic | 50.0% | |
| AGCAAGCAATCGCATGGAGT+CGG | + | tig0045653:2253-2272 | Msa1465850:intergenic | 50.0% | |
| CCACATAGCAAGCAATCGCA+TGG | + | tig0045653:2259-2278 | Msa1465850:intergenic | 50.0% | |
| !! | CCATGCGATTGCTTGCTATG+TGG | - | tig0045653:2256-2275 | Msa1465850:CDS | 50.0% |
| !! | GCTTGCTATGTGGCTTTGGT+TGG | - | tig0045653:2266-2285 | Msa1465850:CDS | 50.0% |
| TGAGCAAGCGATTGAAGGGA+TGG | - | tig0045653:2506-2525 | Msa1465850:CDS | 50.0% | |
| ! | GTTTGGTTCGATTGGACCAG+TGG | - | tig0045653:2632-2651 | Msa1465850:intron | 50.0% |
| ! | GATCTGCTGTTCGGTTCGTT+TGG | - | tig0045653:2654-2673 | Msa1465850:intron | 50.0% |
| ! | TTCGGTTCGTTTGGGATTGC+TGG | - | tig0045653:2663-2682 | Msa1465850:intron | 50.0% |
| AGATGGAGGAATCATACCGG+CGG | - | tig0045653:2719-2738 | Msa1465850:intron | 50.0% | |
| GAATCATACCGGCGGATGAT+AGG | - | tig0045653:2727-2746 | Msa1465850:intron | 50.0% | |
| GTTCCGAAGAGAGCAAACAC+TGG | - | tig0045653:2990-3009 | Msa1465850:CDS | 50.0% | |
| CGAAGAGAGCAAACACTGGT+AGG | - | tig0045653:2994-3013 | Msa1465850:CDS | 50.0% | |
| !! | TCTGGAGAGACTTCTGGTTC+TGG | - | tig0045653:3026-3045 | Msa1465850:CDS | 50.0% |
| !! | GAGACTTCTGGTTCTGGTTC+TGG | - | tig0045653:3032-3051 | Msa1465850:CDS | 50.0% |
| TTCGAACTCGAACTCGAACG+TGG | - | tig0045653:1664-1683 | Msa1465850:CDS | 50.0% | |
| AAGAGGAACCTGCAACTTCG+TGG | - | tig0045653:1687-1706 | Msa1465850:CDS | 50.0% | |
| AGAGGAACCTGCAACTTCGT+GGG | - | tig0045653:1688-1707 | Msa1465850:CDS | 50.0% | |
| AACTCATCCCACGAAGTTGC+AGG | + | tig0045653:1698-1717 | Msa1465850:intergenic | 50.0% | |
| AGCAAGCAATCGCATGGAGT+CGG | + | tig0045653:2253-2272 | Msa1465850:intergenic | 50.0% | |
| CCACATAGCAAGCAATCGCA+TGG | + | tig0045653:2259-2278 | Msa1465850:intergenic | 50.0% | |
| !! | CCATGCGATTGCTTGCTATG+TGG | - | tig0045653:2256-2275 | Msa1465850:CDS | 50.0% |
| !! | GCTTGCTATGTGGCTTTGGT+TGG | - | tig0045653:2266-2285 | Msa1465850:CDS | 50.0% |
| TGAGCAAGCGATTGAAGGGA+TGG | - | tig0045653:2506-2525 | Msa1465850:CDS | 50.0% | |
| ! | GTTTGGTTCGATTGGACCAG+TGG | - | tig0045653:2632-2651 | Msa1465850:intron | 50.0% |
| ! | GATCTGCTGTTCGGTTCGTT+TGG | - | tig0045653:2654-2673 | Msa1465850:intron | 50.0% |
| ! | TTCGGTTCGTTTGGGATTGC+TGG | - | tig0045653:2663-2682 | Msa1465850:intron | 50.0% |
| AGATGGAGGAATCATACCGG+CGG | - | tig0045653:2719-2738 | Msa1465850:intron | 50.0% | |
| GAATCATACCGGCGGATGAT+AGG | - | tig0045653:2727-2746 | Msa1465850:intron | 50.0% | |
| GTTCCGAAGAGAGCAAACAC+TGG | - | tig0045653:2990-3009 | Msa1465850:CDS | 50.0% | |
| CGAAGAGAGCAAACACTGGT+AGG | - | tig0045653:2994-3013 | Msa1465850:CDS | 50.0% | |
| !! | TCTGGAGAGACTTCTGGTTC+TGG | - | tig0045653:3026-3045 | Msa1465850:CDS | 50.0% |
| !! | GAGACTTCTGGTTCTGGTTC+TGG | - | tig0045653:3032-3051 | Msa1465850:CDS | 50.0% |
| CTCGAACTCGAACGTGGAAG+AGG | - | tig0045653:1670-1689 | Msa1465850:CDS | 55.0% | |
| AGCAATCGCATGGAGTCGGA+AGG | + | tig0045653:2249-2268 | Msa1465850:intergenic | 55.0% | |
| GGACCAGTGGATCTGCTGTT+CGG | - | tig0045653:2645-2664 | Msa1465850:intron | 55.0% | |
| GAACCGAACAGCAGATCCAC+TGG | + | tig0045653:2651-2670 | Msa1465850:intergenic | 55.0% | |
| !! | GGTTCTGGTTCTGGTTCTCG+AGG | - | tig0045653:3041-3060 | Msa1465850:CDS | 55.0% |
| CTCGAACTCGAACGTGGAAG+AGG | - | tig0045653:1670-1689 | Msa1465850:CDS | 55.0% | |
| AGCAATCGCATGGAGTCGGA+AGG | + | tig0045653:2249-2268 | Msa1465850:intergenic | 55.0% | |
| GGACCAGTGGATCTGCTGTT+CGG | - | tig0045653:2645-2664 | Msa1465850:intron | 55.0% | |
| GAACCGAACAGCAGATCCAC+TGG | + | tig0045653:2651-2670 | Msa1465850:intergenic | 55.0% | |
| !! | GGTTCTGGTTCTGGTTCTCG+AGG | - | tig0045653:3041-3060 | Msa1465850:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0045653 | gene | 1653 | 3073 | 1653 | ID=Msa1465850;Name=Msa1465850 |
| tig0045653 | mRNA | 1653 | 3073 | 1653 | ID=Msa1465850-mRNA-1;Parent=Msa1465850;Name=Msa1465850-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|0|0|2|0|340 |
| tig0045653 | exon | 2950 | 3073 | 2950 | ID=Msa1465850-mRNA-1:exon:24912;Parent=Msa1465850-mRNA-1 |
| tig0045653 | exon | 1653 | 2551 | 1653 | ID=Msa1465850-mRNA-1:exon:24911;Parent=Msa1465850-mRNA-1 |
| tig0045653 | CDS | 2950 | 3073 | 2950 | ID=Msa1465850-mRNA-1:cds;Parent=Msa1465850-mRNA-1 |
| tig0045653 | CDS | 1653 | 2551 | 1653 | ID=Msa1465850-mRNA-1:cds;Parent=Msa1465850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
