AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0794730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794730 MtrunA17_Chr5g0396321 98.507 67 1 0 31 97 691 757 9.44e-43 147
Msa0794730 MtrunA17_Chr6g0488821 79.365 63 13 0 32 94 704 766 3.17e-32 117
Msa0794730 MtrunA17_Chr7g0238841 76.190 63 15 0 32 94 450 512 1.57e-29 109
Msa0794730 MtrunA17_Chr6g0486411 75.000 64 15 1 32 94 222 285 3.95e-29 105
Msa0794730 MtrunA17_Chr4g0020031 69.355 62 19 0 32 93 695 756 3.07e-27 103
Msa0794730 MtrunA17_Chr4g0000131 70.968 62 18 0 32 93 694 755 1.17e-26 102
Msa0794730 MtrunA17_Chr4g0000191 67.742 62 20 0 32 93 439 500 2.08e-25 98.2
Msa0794730 MtrunA17_Chr8g0342291 60.317 63 25 0 32 94 537 599 1.85e-24 95.5
Msa0794730 MtrunA17_Chr7g0228111 66.129 62 21 0 32 93 695 756 9.99e-24 93.6
Msa0794730 MtrunA17_Chr6g0488871 72.917 48 13 0 47 94 4 51 2.58e-23 84.7
Msa0794730 MtrunA17_Chr8g0342311 58.730 63 26 0 32 94 454 516 3.46e-23 92.0
Msa0794730 MtrunA17_Chr3g0090601 64.516 62 22 0 32 93 625 686 1.25e-22 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0794730 AT2G07050.2 82.540 63 11 0 32 94 601 663 3.41e-32 118
Msa0794730 AT2G07050.1 82.540 63 11 0 32 94 692 754 3.67e-32 118
Msa0794730 AT3G45130.4 76.190 63 15 0 32 94 692 754 6.89e-32 117
Msa0794730 AT3G45130.1 76.190 63 15 0 32 94 692 754 6.89e-32 117
Msa0794730 AT3G45130.5 76.190 63 15 0 32 94 692 754 6.89e-32 117
Msa0794730 AT3G45130.2 76.190 63 15 0 32 94 692 754 7.33e-32 117
Msa0794730 AT3G45130.3 76.190 63 15 0 32 94 692 754 7.33e-32 117
Msa0794730 AT1G78955.1 75.806 62 15 0 32 93 695 756 6.56e-29 108
Msa0794730 AT1G78955.5 75.806 62 15 0 32 93 520 581 7.03e-29 108
Msa0794730 AT1G78955.4 75.806 62 15 0 32 93 630 691 8.25e-29 108
Msa0794730 AT1G78960.5 67.692 65 21 0 32 96 544 608 6.33e-27 103
Msa0794730 AT1G78960.2 67.692 65 21 0 32 96 695 759 6.44e-27 103
Msa0794730 AT1G78960.1 67.692 65 21 0 32 96 695 759 6.44e-27 103
Msa0794730 AT1G78960.3 67.692 65 21 0 32 96 695 759 6.44e-27 103
Msa0794730 AT1G78950.1 67.742 62 20 0 32 93 695 756 1.59e-24 96.3
Msa0794730 AT1G78950.2 67.742 62 20 0 32 93 704 765 1.59e-24 96.3
Msa0794730 AT1G78970.1 65.079 63 22 0 32 94 692 754 6.65e-24 94.7
Msa0794730 AT1G78970.2 65.079 63 22 0 32 94 692 754 6.65e-24 94.7
Msa0794730 AT1G78970.3 65.079 63 22 0 32 94 692 754 6.65e-24 94.7
Msa0794730 AT1G78500.2 66.667 60 20 0 32 91 701 760 1.52e-22 90.5
Msa0794730 AT1G78500.1 66.667 60 20 0 32 91 701 760 1.52e-22 90.5
Msa0794730 AT4G15370.1 63.333 60 22 0 32 91 695 754 1.25e-21 88.2
Msa0794730 AT4G15370.2 63.333 60 22 0 32 91 692 751 1.33e-21 87.8
Msa0794730 AT3G29255.1 60.000 60 24 0 32 91 641 700 2.67e-20 84.3
Msa0794730 AT1G66960.3 58.333 60 25 0 32 91 695 754 7.10e-20 83.2
Msa0794730 AT1G66960.1 58.333 60 25 0 32 91 695 754 7.10e-20 83.2
Msa0794730 AT1G66960.4 58.333 60 25 0 32 91 695 754 7.10e-20 83.2
Msa0794730 AT1G66960.2 58.333 60 25 0 32 91 704 763 7.18e-20 83.2
Msa0794730 AT4G15340.1 58.621 58 24 0 32 89 700 757 1.39e-19 82.4
Msa0794730 AT5G48010.1 58.621 58 24 0 32 89 692 749 2.07e-19 81.6
Msa0794730 AT5G48010.2 58.621 58 24 0 32 89 700 757 2.11e-19 81.6
Msa0794730 AT5G36150.1 54.839 62 28 0 32 93 695 756 6.09e-19 80.5
Msa0794730 AT5G36150.2 54.839 62 28 0 32 93 695 756 6.09e-19 80.5
Msa0794730 AT5G42600.1 52.459 61 28 1 29 89 693 752 1.16e-15 71.2

Find 49 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCAATCATCGTATTTC+AGG 0.162368 5_3:+6652341 None:intergenic
TCTACCATTTCAGGAAATAA+TGG 0.264459 5_3:-6651993 Msa0794730:intron
AACAGAGTGACTAAATTTAT+AGG 0.317354 5_3:-6651755 Msa0794730:three_prime_UTR
TGTGCTCCTTGTGCTCAAAT+TGG 0.324712 5_3:+6651716 None:intergenic
CTACCATTTCAGGAAATAAT+GGG 0.377145 5_3:-6651992 Msa0794730:intron
GAACCATGGAGGATGGTAAA+AGG 0.379088 5_3:+6651829 None:intergenic
AGTTGTGTATTTGTAGTCAT+TGG 0.382092 5_3:-6651694 Msa0794730:three_prime_UTR
CCTGTTTCATTATATCGAAA+TGG 0.386161 5_3:+6652171 None:intergenic
CTGTTGATTTCACTTTAGAT+AGG 0.394234 5_3:-6651873 Msa0794730:exon
CCATTTCGATATAATGAAAC+AGG 0.397404 5_3:-6652171 Msa0794730:CDS
AAAATATCCTCCCTGTCAAT+TGG 0.404977 5_3:+6651600 None:intergenic
AGTGTCCTCTATTATGTGTT+TGG 0.411221 5_3:-6651476 Msa0794730:three_prime_UTR
ACAGAAACATATTCCCCATA+TGG 0.426625 5_3:-6651931 Msa0794730:CDS
CAGTGGTGTTGGATCTCTCT+TGG 0.433214 5_3:+6652148 None:intergenic
ATTTAGTCACTCTGTTTAGC+AGG 0.433805 5_3:+6651762 None:intergenic
GAAATATGTGGTGGGTCAAA+AGG 0.444489 5_3:-6651640 Msa0794730:three_prime_UTR
GTATTCTCCCAACGCCCATA+TGG 0.453168 5_3:+6651916 None:intergenic
TATTCTCCCAACGCCCATAT+GGG 0.459458 5_3:+6651917 None:intergenic
CTATCTAAAGTGAAATCAAC+AGG 0.464113 5_3:+6651874 None:intergenic
GTCCTCTATTATGTGTTTGG+CGG 0.484806 5_3:-6651473 Msa0794730:three_prime_UTR
ATATTCCCCATATGGGCGTT+GGG 0.489177 5_3:-6651923 Msa0794730:CDS
TTGGTTTGTGAGGAGAAAGT+TGG 0.489942 5_3:-6651570 Msa0794730:three_prime_UTR
TGACTTATGAGTTCGGTGTT+CGG 0.490559 5_3:-6651788 Msa0794730:three_prime_UTR
ATGCTTGATAAATTCTCAAA+TGG 0.493806 5_3:-6652111 Msa0794730:CDS
ATAATAGAGGACACTCTAGT+TGG 0.503188 5_3:+6651484 None:intergenic
CATATTCCCCATATGGGCGT+TGG 0.506392 5_3:-6651924 Msa0794730:CDS
AAGTTTATGACTTATGAGTT+CGG 0.507498 5_3:-6651795 Msa0794730:three_prime_UTR
GCTGCGCGGTGCAGTGGTGT+TGG 0.509005 5_3:+6652137 None:intergenic
ATAAATTCTCAAATGGAGAA+TGG 0.509659 5_3:-6652104 Msa0794730:CDS
CATACAGCTGCGCGGTGCAG+TGG 0.527189 5_3:+6652131 None:intergenic
TTTAAGGTGGTTGGTTTGTG+AGG 0.529431 5_3:-6651580 Msa0794730:three_prime_UTR
CAGAAACATATTCCCCATAT+GGG 0.533568 5_3:-6651930 Msa0794730:CDS
AAAGCAATCATCGTATTTCA+GGG 0.540340 5_3:+6652342 None:intergenic
TTGCATCCAATTTGAGCACA+AGG 0.545698 5_3:-6651722 Msa0794730:three_prime_UTR
TACCGCCAAACACATAATAG+AGG 0.545956 5_3:+6651471 None:intergenic
GAATGGTGACTTTCCGCAAG+AGG 0.565873 5_3:-6652087 Msa0794730:intron
GCCTTCAACAATACCTCTTG+CGG 0.572976 5_3:+6652074 None:intergenic
AAGAAGAGAACCATGGAGGA+TGG 0.589353 5_3:+6651822 None:intergenic
AAAGGTTGAAATAATTCGAA+CGG 0.602830 5_3:+6651847 None:intergenic
ATTCTCCCAACGCCCATATG+GGG 0.616092 5_3:+6651918 None:intergenic
TTTGTTCAATCCAATTGACA+GGG 0.626549 5_3:-6651610 Msa0794730:three_prime_UTR
GTTCAATCCAATTGACAGGG+AGG 0.635827 5_3:-6651607 Msa0794730:three_prime_UTR
ATCAATGTATGAGAAATATG+TGG 0.674004 5_3:-6651652 Msa0794730:three_prime_UTR
AATGTATGAGAAATATGTGG+TGG 0.684248 5_3:-6651649 Msa0794730:three_prime_UTR
ATGTATGAGAAATATGTGGT+GGG 0.691708 5_3:-6651648 Msa0794730:three_prime_UTR
TTTCAAGAAGAGAACCATGG+AGG 0.696454 5_3:+6651818 None:intergenic
AGGTCTGCAATACATGACGA+CGG 0.735163 5_3:+6651894 None:intergenic
GCAATCATCGTATTTCAGGG+TGG 0.742514 5_3:+6652345 None:intergenic
TTATCAAGCATACAGCTGCG+CGG 0.750861 5_3:+6652123 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTAAAATATATACAT+GGG + chr5_3:6651755-6651774 None:intergenic 10.0%
!!! TATAACAGTAAATATTTTTA+TGG - chr5_3:6652254-6652273 Msa0794730:intron 10.0%
!!! ATAACAGTAAATATTTTTAT+GGG - chr5_3:6652255-6652274 Msa0794730:intron 10.0%
!!! ATGATTTAAAATATATACAT+GGG + chr5_3:6651755-6651774 None:intergenic 10.0%
!!! TATAACAGTAAATATTTTTA+TGG - chr5_3:6652254-6652273 Msa0794730:intron 10.0%
!!! ATAACAGTAAATATTTTTAT+GGG - chr5_3:6652255-6652274 Msa0794730:intron 10.0%
!! AAGTAAGTATTCAATTATTT+GGG + chr5_3:6651514-6651533 None:intergenic 15.0%
!!! CATGATTTAAAATATATACA+TGG + chr5_3:6651756-6651775 None:intergenic 15.0%
!! AAGTAAGTATTCAATTATTT+GGG + chr5_3:6651514-6651533 None:intergenic 15.0%
!!! CATGATTTAAAATATATACA+TGG + chr5_3:6651756-6651775 None:intergenic 15.0%
!! CAAGTAAGTATTCAATTATT+TGG + chr5_3:6651515-6651534 None:intergenic 20.0%
!! AAAATATATACATGGGTAAA+GGG + chr5_3:6651748-6651767 None:intergenic 20.0%
!! TAAAATATATACATGGGTAA+AGG + chr5_3:6651749-6651768 None:intergenic 20.0%
!! CAAGTAAGTATTCAATTATT+TGG + chr5_3:6651515-6651534 None:intergenic 20.0%
!! AAAATATATACATGGGTAAA+GGG + chr5_3:6651748-6651767 None:intergenic 20.0%
!! TAAAATATATACATGGGTAA+AGG + chr5_3:6651749-6651768 None:intergenic 20.0%
! CAGAATCAGGATTATATATA+CGG + chr5_3:6651562-6651581 None:intergenic 25.0%
! ATGCTTGATAAATTCTCAAA+TGG - chr5_3:6651665-6651684 Msa0794730:three_prime_UTR 25.0%
! ATAAATTCTCAAATGGAGAA+TGG - chr5_3:6651672-6651691 Msa0794730:three_prime_UTR 25.0%
! AAATATATACATGGGTAAAG+GGG + chr5_3:6651747-6651766 None:intergenic 25.0%
! AAAGGTTGAAATAATTCGAA+CGG + chr5_3:6651932-6651951 None:intergenic 25.0%
! AAGTTTATGACTTATGAGTT+CGG - chr5_3:6651981-6652000 Msa0794730:CDS 25.0%
! AACAGAGTGACTAAATTTAT+AGG - chr5_3:6652021-6652040 Msa0794730:intron 25.0%
! ATCAATGTATGAGAAATATG+TGG - chr5_3:6652124-6652143 Msa0794730:CDS 25.0%
! TATAAAAACTCTGTTTGTAG+CGG - chr5_3:6652326-6652345 Msa0794730:intron 25.0%
! CAGAATCAGGATTATATATA+CGG + chr5_3:6651562-6651581 None:intergenic 25.0%
! ATGCTTGATAAATTCTCAAA+TGG - chr5_3:6651665-6651684 Msa0794730:three_prime_UTR 25.0%
! ATAAATTCTCAAATGGAGAA+TGG - chr5_3:6651672-6651691 Msa0794730:three_prime_UTR 25.0%
! AAATATATACATGGGTAAAG+GGG + chr5_3:6651747-6651766 None:intergenic 25.0%
! AAAGGTTGAAATAATTCGAA+CGG + chr5_3:6651932-6651951 None:intergenic 25.0%
! AAGTTTATGACTTATGAGTT+CGG - chr5_3:6651981-6652000 Msa0794730:CDS 25.0%
! AACAGAGTGACTAAATTTAT+AGG - chr5_3:6652021-6652040 Msa0794730:intron 25.0%
! ATCAATGTATGAGAAATATG+TGG - chr5_3:6652124-6652143 Msa0794730:CDS 25.0%
! TATAAAAACTCTGTTTGTAG+CGG - chr5_3:6652326-6652345 Msa0794730:intron 25.0%
AAAGCAATCATCGTATTTCA+GGG + chr5_3:6651437-6651456 None:intergenic 30.0%
AAAAGCAATCATCGTATTTC+AGG + chr5_3:6651438-6651457 None:intergenic 30.0%
TATTCTTCTACAACAGAATC+AGG + chr5_3:6651575-6651594 None:intergenic 30.0%
CCTGTTTCATTATATCGAAA+TGG + chr5_3:6651608-6651627 None:intergenic 30.0%
CCATTTCGATATAATGAAAC+AGG - chr5_3:6651605-6651624 Msa0794730:three_prime_UTR 30.0%
AATATATACATGGGTAAAGG+GGG + chr5_3:6651746-6651765 None:intergenic 30.0%
TGTTACTATTCTACCATTTC+AGG - chr5_3:6651774-6651793 Msa0794730:three_prime_UTR 30.0%
TCTACCATTTCAGGAAATAA+TGG - chr5_3:6651783-6651802 Msa0794730:three_prime_UTR 30.0%
CTACCATTTCAGGAAATAAT+GGG - chr5_3:6651784-6651803 Msa0794730:three_prime_UTR 30.0%
! CTATCTAAAGTGAAATCAAC+AGG + chr5_3:6651905-6651924 None:intergenic 30.0%
!! CTGTTGATTTCACTTTAGAT+AGG - chr5_3:6651903-6651922 Msa0794730:CDS 30.0%
AGTTGTGTATTTGTAGTCAT+TGG - chr5_3:6652082-6652101 Msa0794730:intron 30.0%
AATGTATGAGAAATATGTGG+TGG - chr5_3:6652127-6652146 Msa0794730:CDS 30.0%
ATGTATGAGAAATATGTGGT+GGG - chr5_3:6652128-6652147 Msa0794730:CDS 30.0%
! TTTTGTTCAATCCAATTGAC+AGG - chr5_3:6652165-6652184 Msa0794730:CDS 30.0%
TTTGTTCAATCCAATTGACA+GGG - chr5_3:6652166-6652185 Msa0794730:CDS 30.0%
AAAGCAATCATCGTATTTCA+GGG + chr5_3:6651437-6651456 None:intergenic 30.0%
AAAAGCAATCATCGTATTTC+AGG + chr5_3:6651438-6651457 None:intergenic 30.0%
TATTCTTCTACAACAGAATC+AGG + chr5_3:6651575-6651594 None:intergenic 30.0%
CCTGTTTCATTATATCGAAA+TGG + chr5_3:6651608-6651627 None:intergenic 30.0%
CCATTTCGATATAATGAAAC+AGG - chr5_3:6651605-6651624 Msa0794730:three_prime_UTR 30.0%
AATATATACATGGGTAAAGG+GGG + chr5_3:6651746-6651765 None:intergenic 30.0%
TGTTACTATTCTACCATTTC+AGG - chr5_3:6651774-6651793 Msa0794730:three_prime_UTR 30.0%
TCTACCATTTCAGGAAATAA+TGG - chr5_3:6651783-6651802 Msa0794730:three_prime_UTR 30.0%
CTACCATTTCAGGAAATAAT+GGG - chr5_3:6651784-6651803 Msa0794730:three_prime_UTR 30.0%
! CTATCTAAAGTGAAATCAAC+AGG + chr5_3:6651905-6651924 None:intergenic 30.0%
!! CTGTTGATTTCACTTTAGAT+AGG - chr5_3:6651903-6651922 Msa0794730:CDS 30.0%
AGTTGTGTATTTGTAGTCAT+TGG - chr5_3:6652082-6652101 Msa0794730:intron 30.0%
AATGTATGAGAAATATGTGG+TGG - chr5_3:6652127-6652146 Msa0794730:CDS 30.0%
ATGTATGAGAAATATGTGGT+GGG - chr5_3:6652128-6652147 Msa0794730:CDS 30.0%
! TTTTGTTCAATCCAATTGAC+AGG - chr5_3:6652165-6652184 Msa0794730:CDS 30.0%
TTTGTTCAATCCAATTGACA+GGG - chr5_3:6652166-6652185 Msa0794730:CDS 30.0%
ACTCCCATTATTTCCTGAAA+TGG + chr5_3:6651790-6651809 None:intergenic 35.0%
ACAGAAACATATTCCCCATA+TGG - chr5_3:6651845-6651864 Msa0794730:three_prime_UTR 35.0%
CAGAAACATATTCCCCATAT+GGG - chr5_3:6651846-6651865 Msa0794730:three_prime_UTR 35.0%
!!! CTTTTTCAAGAAGAGAACCA+TGG + chr5_3:6651964-6651983 None:intergenic 35.0%
ATTTAGTCACTCTGTTTAGC+AGG + chr5_3:6652017-6652036 None:intergenic 35.0%
AAAATATCCTCCCTGTCAAT+TGG + chr5_3:6652179-6652198 None:intergenic 35.0%
! TTGACAGGGAGGATATTTTA+AGG - chr5_3:6652180-6652199 Msa0794730:CDS 35.0%
ATAATAGAGGACACTCTAGT+TGG + chr5_3:6652295-6652314 None:intergenic 35.0%
AGTGTCCTCTATTATGTGTT+TGG - chr5_3:6652300-6652319 Msa0794730:intron 35.0%
ACTCCCATTATTTCCTGAAA+TGG + chr5_3:6651790-6651809 None:intergenic 35.0%
ACAGAAACATATTCCCCATA+TGG - chr5_3:6651845-6651864 Msa0794730:three_prime_UTR 35.0%
CAGAAACATATTCCCCATAT+GGG - chr5_3:6651846-6651865 Msa0794730:three_prime_UTR 35.0%
!!! CTTTTTCAAGAAGAGAACCA+TGG + chr5_3:6651964-6651983 None:intergenic 35.0%
ATTTAGTCACTCTGTTTAGC+AGG + chr5_3:6652017-6652036 None:intergenic 35.0%
AAAATATCCTCCCTGTCAAT+TGG + chr5_3:6652179-6652198 None:intergenic 35.0%
! TTGACAGGGAGGATATTTTA+AGG - chr5_3:6652180-6652199 Msa0794730:CDS 35.0%
ATAATAGAGGACACTCTAGT+TGG + chr5_3:6652295-6652314 None:intergenic 35.0%
AGTGTCCTCTATTATGTGTT+TGG - chr5_3:6652300-6652319 Msa0794730:intron 35.0%
GGGGAGTAAAAACAGAGATA+TGG + chr5_3:6651727-6651746 None:intergenic 40.0%
TTTCAAGAAGAGAACCATGG+AGG + chr5_3:6651961-6651980 None:intergenic 40.0%
!! TGACTTATGAGTTCGGTGTT+CGG - chr5_3:6651988-6652007 Msa0794730:intron 40.0%
TTGCATCCAATTTGAGCACA+AGG - chr5_3:6652054-6652073 Msa0794730:intron 40.0%
!! GAAATATGTGGTGGGTCAAA+AGG - chr5_3:6652136-6652155 Msa0794730:CDS 40.0%
!! ACAGGGAGGATATTTTAAGG+TGG - chr5_3:6652183-6652202 Msa0794730:CDS 40.0%
!!! GGAGGATATTTTAAGGTGGT+TGG - chr5_3:6652187-6652206 Msa0794730:CDS 40.0%
!! TTTAAGGTGGTTGGTTTGTG+AGG - chr5_3:6652196-6652215 Msa0794730:intron 40.0%
!! TTGGTTTGTGAGGAGAAAGT+TGG - chr5_3:6652206-6652225 Msa0794730:intron 40.0%
GTCCTCTATTATGTGTTTGG+CGG - chr5_3:6652303-6652322 Msa0794730:intron 40.0%
TACCGCCAAACACATAATAG+AGG + chr5_3:6652308-6652327 None:intergenic 40.0%
GGGGAGTAAAAACAGAGATA+TGG + chr5_3:6651727-6651746 None:intergenic 40.0%
TTTCAAGAAGAGAACCATGG+AGG + chr5_3:6651961-6651980 None:intergenic 40.0%
!! TGACTTATGAGTTCGGTGTT+CGG - chr5_3:6651988-6652007 Msa0794730:intron 40.0%
TTGCATCCAATTTGAGCACA+AGG - chr5_3:6652054-6652073 Msa0794730:intron 40.0%
!! GAAATATGTGGTGGGTCAAA+AGG - chr5_3:6652136-6652155 Msa0794730:CDS 40.0%
!! ACAGGGAGGATATTTTAAGG+TGG - chr5_3:6652183-6652202 Msa0794730:CDS 40.0%
!!! GGAGGATATTTTAAGGTGGT+TGG - chr5_3:6652187-6652206 Msa0794730:CDS 40.0%
!! TTTAAGGTGGTTGGTTTGTG+AGG - chr5_3:6652196-6652215 Msa0794730:intron 40.0%
!! TTGGTTTGTGAGGAGAAAGT+TGG - chr5_3:6652206-6652225 Msa0794730:intron 40.0%
GTCCTCTATTATGTGTTTGG+CGG - chr5_3:6652303-6652322 Msa0794730:intron 40.0%
TACCGCCAAACACATAATAG+AGG + chr5_3:6652308-6652327 None:intergenic 40.0%
GCAATCATCGTATTTCAGGG+TGG + chr5_3:6651434-6651453 None:intergenic 45.0%
TATAGAAACCCAGAACGCAG+TGG + chr5_3:6651468-6651487 None:intergenic 45.0%
TTATCAAGCATACAGCTGCG+CGG + chr5_3:6651656-6651675 None:intergenic 45.0%
!! TCCGCAAGAGGTATTGTTGA+AGG - chr5_3:6651701-6651720 Msa0794730:three_prime_UTR 45.0%
GCCTTCAACAATACCTCTTG+CGG + chr5_3:6651705-6651724 None:intergenic 45.0%
ATATTCCCCATATGGGCGTT+GGG - chr5_3:6651853-6651872 Msa0794730:three_prime_UTR 45.0%
TATTCTCCCAACGCCCATAT+GGG + chr5_3:6651862-6651881 None:intergenic 45.0%
AGGTCTGCAATACATGACGA+CGG + chr5_3:6651885-6651904 None:intergenic 45.0%
! CAACCTTTTACCATCCTCCA+TGG - chr5_3:6651944-6651963 Msa0794730:CDS 45.0%
GAACCATGGAGGATGGTAAA+AGG + chr5_3:6651950-6651969 None:intergenic 45.0%
AAGAAGAGAACCATGGAGGA+TGG + chr5_3:6651957-6651976 None:intergenic 45.0%
TGTGCTCCTTGTGCTCAAAT+TGG + chr5_3:6652063-6652082 None:intergenic 45.0%
GTTCAATCCAATTGACAGGG+AGG - chr5_3:6652169-6652188 Msa0794730:CDS 45.0%
GCAATCATCGTATTTCAGGG+TGG + chr5_3:6651434-6651453 None:intergenic 45.0%
TATAGAAACCCAGAACGCAG+TGG + chr5_3:6651468-6651487 None:intergenic 45.0%
TTATCAAGCATACAGCTGCG+CGG + chr5_3:6651656-6651675 None:intergenic 45.0%
!! TCCGCAAGAGGTATTGTTGA+AGG - chr5_3:6651701-6651720 Msa0794730:three_prime_UTR 45.0%
GCCTTCAACAATACCTCTTG+CGG + chr5_3:6651705-6651724 None:intergenic 45.0%
ATATTCCCCATATGGGCGTT+GGG - chr5_3:6651853-6651872 Msa0794730:three_prime_UTR 45.0%
TATTCTCCCAACGCCCATAT+GGG + chr5_3:6651862-6651881 None:intergenic 45.0%
AGGTCTGCAATACATGACGA+CGG + chr5_3:6651885-6651904 None:intergenic 45.0%
! CAACCTTTTACCATCCTCCA+TGG - chr5_3:6651944-6651963 Msa0794730:CDS 45.0%
GAACCATGGAGGATGGTAAA+AGG + chr5_3:6651950-6651969 None:intergenic 45.0%
AAGAAGAGAACCATGGAGGA+TGG + chr5_3:6651957-6651976 None:intergenic 45.0%
TGTGCTCCTTGTGCTCAAAT+TGG + chr5_3:6652063-6652082 None:intergenic 45.0%
GTTCAATCCAATTGACAGGG+AGG - chr5_3:6652169-6652188 Msa0794730:CDS 45.0%
TTCTGTTTGCCACTGCGTTC+TGG - chr5_3:6651456-6651475 Msa0794730:three_prime_UTR 50.0%
TCTGTTTGCCACTGCGTTCT+GGG - chr5_3:6651457-6651476 Msa0794730:three_prime_UTR 50.0%
! CAGTGGTGTTGGATCTCTCT+TGG + chr5_3:6651631-6651650 None:intergenic 50.0%
GAATGGTGACTTTCCGCAAG+AGG - chr5_3:6651689-6651708 Msa0794730:three_prime_UTR 50.0%
CATATTCCCCATATGGGCGT+TGG - chr5_3:6651852-6651871 Msa0794730:three_prime_UTR 50.0%
ATTCTCCCAACGCCCATATG+GGG + chr5_3:6651861-6651880 None:intergenic 50.0%
GTATTCTCCCAACGCCCATA+TGG + chr5_3:6651863-6651882 None:intergenic 50.0%
TTCTGTTTGCCACTGCGTTC+TGG - chr5_3:6651456-6651475 Msa0794730:three_prime_UTR 50.0%
TCTGTTTGCCACTGCGTTCT+GGG - chr5_3:6651457-6651476 Msa0794730:three_prime_UTR 50.0%
! CAGTGGTGTTGGATCTCTCT+TGG + chr5_3:6651631-6651650 None:intergenic 50.0%
GAATGGTGACTTTCCGCAAG+AGG - chr5_3:6651689-6651708 Msa0794730:three_prime_UTR 50.0%
CATATTCCCCATATGGGCGT+TGG - chr5_3:6651852-6651871 Msa0794730:three_prime_UTR 50.0%
ATTCTCCCAACGCCCATATG+GGG + chr5_3:6651861-6651880 None:intergenic 50.0%
GTATTCTCCCAACGCCCATA+TGG + chr5_3:6651863-6651882 None:intergenic 50.0%
CATACAGCTGCGCGGTGCAG+TGG + chr5_3:6651648-6651667 None:intergenic 65.0%
CATACAGCTGCGCGGTGCAG+TGG + chr5_3:6651648-6651667 None:intergenic 65.0%
GCTGCGCGGTGCAGTGGTGT+TGG + chr5_3:6651642-6651661 None:intergenic 70.0%
GCTGCGCGGTGCAGTGGTGT+TGG + chr5_3:6651642-6651661 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 6651403 6652395 6651403 ID=Msa0794730;Name=Msa0794730
chr5_3 mRNA 6651403 6652395 6651403 ID=Msa0794730-mRNA-1;Parent=Msa0794730;Name=Msa0794730-mRNA-1;_AED=0.45;_eAED=0.47;_QI=0|0.5|0.33|0.66|1|1|3|486|97
chr5_3 exon 6651403 6652002 6651403 ID=Msa0794730-mRNA-1:exon:2711;Parent=Msa0794730-mRNA-1
chr5_3 exon 6652088 6652210 6652088 ID=Msa0794730-mRNA-1:exon:2710;Parent=Msa0794730-mRNA-1
chr5_3 exon 6652339 6652395 6652339 ID=Msa0794730-mRNA-1:exon:2709;Parent=Msa0794730-mRNA-1
chr5_3 CDS 6652339 6652395 6652339 ID=Msa0794730-mRNA-1:cds;Parent=Msa0794730-mRNA-1
chr5_3 CDS 6652088 6652210 6652088 ID=Msa0794730-mRNA-1:cds;Parent=Msa0794730-mRNA-1
chr5_3 CDS 6651889 6652002 6651889 ID=Msa0794730-mRNA-1:cds;Parent=Msa0794730-mRNA-1
chr5_3 three_prime_UTR 6651403 6651888 6651403 ID=Msa0794730-mRNA-1:three_prime_utr;Parent=Msa0794730-mRNA-1
Gene Sequence

>Msa0794730

ATGGCTCTTTACTTTTCTGTTATGCTTGCCACCCTGAAATACGATGATTGCTTTTCTAAGAATAAAAATGATATCCATTTCGATATAATGAAACAGGCCAAGAGAGATCCAACACCACTGCACCGCGCAGCTGTATGCTTGATAAATTCTCAAATGGAGAATGGTGACTTTCCGCAAGAGGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACTTATGCTGCATACAGAAACATATTCCCCATATGGGCGTTGGGAGAATACCGTCGTCATGTATTGCAGACCTGTTGA

Protein sequence

>Msa0794730

MALYFSVMLATLKYDDCFSKNKNDIHFDIMKQAKRDPTPLHRAAVCLINSQMENGDFPQEEIMGVFNKNCMITYAAYRNIFPIWALGEYRRHVLQTC*