AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750170 MtrunA17_Chr5g0396321 98.507 67 1 0 31 97 691 757 9.44e-43 147
Msa0750170 MtrunA17_Chr6g0488821 79.365 63 13 0 32 94 704 766 3.17e-32 117
Msa0750170 MtrunA17_Chr7g0238841 76.190 63 15 0 32 94 450 512 1.57e-29 109
Msa0750170 MtrunA17_Chr6g0486411 75.000 64 15 1 32 94 222 285 3.95e-29 105
Msa0750170 MtrunA17_Chr4g0020031 69.355 62 19 0 32 93 695 756 3.07e-27 103
Msa0750170 MtrunA17_Chr4g0000131 70.968 62 18 0 32 93 694 755 1.17e-26 102
Msa0750170 MtrunA17_Chr4g0000191 67.742 62 20 0 32 93 439 500 2.08e-25 98.2
Msa0750170 MtrunA17_Chr8g0342291 60.317 63 25 0 32 94 537 599 1.85e-24 95.5
Msa0750170 MtrunA17_Chr7g0228111 66.129 62 21 0 32 93 695 756 9.99e-24 93.6
Msa0750170 MtrunA17_Chr6g0488871 72.917 48 13 0 47 94 4 51 2.58e-23 84.7
Msa0750170 MtrunA17_Chr8g0342311 58.730 63 26 0 32 94 454 516 3.46e-23 92.0
Msa0750170 MtrunA17_Chr3g0090601 64.516 62 22 0 32 93 625 686 1.25e-22 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750170 AT2G07050.2 82.540 63 11 0 32 94 601 663 3.41e-32 118
Msa0750170 AT2G07050.1 82.540 63 11 0 32 94 692 754 3.67e-32 118
Msa0750170 AT3G45130.4 76.190 63 15 0 32 94 692 754 6.89e-32 117
Msa0750170 AT3G45130.1 76.190 63 15 0 32 94 692 754 6.89e-32 117
Msa0750170 AT3G45130.5 76.190 63 15 0 32 94 692 754 6.89e-32 117
Msa0750170 AT3G45130.2 76.190 63 15 0 32 94 692 754 7.33e-32 117
Msa0750170 AT3G45130.3 76.190 63 15 0 32 94 692 754 7.33e-32 117
Msa0750170 AT1G78955.1 75.806 62 15 0 32 93 695 756 6.56e-29 108
Msa0750170 AT1G78955.5 75.806 62 15 0 32 93 520 581 7.03e-29 108
Msa0750170 AT1G78955.4 75.806 62 15 0 32 93 630 691 8.25e-29 108
Msa0750170 AT1G78960.5 67.692 65 21 0 32 96 544 608 6.33e-27 103
Msa0750170 AT1G78960.2 67.692 65 21 0 32 96 695 759 6.44e-27 103
Msa0750170 AT1G78960.1 67.692 65 21 0 32 96 695 759 6.44e-27 103
Msa0750170 AT1G78960.3 67.692 65 21 0 32 96 695 759 6.44e-27 103
Msa0750170 AT1G78950.1 67.742 62 20 0 32 93 695 756 1.59e-24 96.3
Msa0750170 AT1G78950.2 67.742 62 20 0 32 93 704 765 1.59e-24 96.3
Msa0750170 AT1G78970.1 65.079 63 22 0 32 94 692 754 6.65e-24 94.7
Msa0750170 AT1G78970.2 65.079 63 22 0 32 94 692 754 6.65e-24 94.7
Msa0750170 AT1G78970.3 65.079 63 22 0 32 94 692 754 6.65e-24 94.7
Msa0750170 AT1G78500.2 66.667 60 20 0 32 91 701 760 1.52e-22 90.5
Msa0750170 AT1G78500.1 66.667 60 20 0 32 91 701 760 1.52e-22 90.5
Msa0750170 AT4G15370.1 63.333 60 22 0 32 91 695 754 1.25e-21 88.2
Msa0750170 AT4G15370.2 63.333 60 22 0 32 91 692 751 1.33e-21 87.8
Msa0750170 AT3G29255.1 60.000 60 24 0 32 91 641 700 2.67e-20 84.3
Msa0750170 AT1G66960.3 58.333 60 25 0 32 91 695 754 7.10e-20 83.2
Msa0750170 AT1G66960.1 58.333 60 25 0 32 91 695 754 7.10e-20 83.2
Msa0750170 AT1G66960.4 58.333 60 25 0 32 91 695 754 7.10e-20 83.2
Msa0750170 AT1G66960.2 58.333 60 25 0 32 91 704 763 7.18e-20 83.2
Msa0750170 AT4G15340.1 58.621 58 24 0 32 89 700 757 1.39e-19 82.4
Msa0750170 AT5G48010.1 58.621 58 24 0 32 89 692 749 2.07e-19 81.6
Msa0750170 AT5G48010.2 58.621 58 24 0 32 89 700 757 2.11e-19 81.6
Msa0750170 AT5G36150.1 54.839 62 28 0 32 93 695 756 6.09e-19 80.5
Msa0750170 AT5G36150.2 54.839 62 28 0 32 93 695 756 6.09e-19 80.5
Msa0750170 AT5G42600.1 52.459 61 28 1 29 89 693 752 1.16e-15 71.2

Find 49 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAAGCAATCATCGTATTTC+AGG 0.162368 5_2:-3574462 None:intergenic
TCTACCATTTCAGGAAATAA+TGG 0.264459 5_2:+3574810 Msa0750170:intron
AACAGAGTGACTAAATTTAT+AGG 0.317354 5_2:+3575048 Msa0750170:three_prime_UTR
TGTGCTCCTTGTGCTCAAAT+TGG 0.324712 5_2:-3575087 None:intergenic
CTACCATTTCAGGAAATAAT+GGG 0.377145 5_2:+3574811 Msa0750170:intron
GAACCATGGAGGATGGTAAA+AGG 0.379088 5_2:-3574974 None:intergenic
AGTTGTGTATTTGTAGTCAT+TGG 0.382092 5_2:+3575109 Msa0750170:three_prime_UTR
CCTGTTTCATTATATCGAAA+TGG 0.386161 5_2:-3574632 None:intergenic
CTGTTGATTTCACTTTAGAT+AGG 0.394234 5_2:+3574930 Msa0750170:exon
CCATTTCGATATAATGAAAC+AGG 0.397404 5_2:+3574632 Msa0750170:CDS
AAAATATCCTCCCTGTCAAT+TGG 0.404977 5_2:-3575203 None:intergenic
AGTGTCCTCTATTATGTGTT+TGG 0.411221 5_2:+3575327 Msa0750170:three_prime_UTR
ACAGAAACATATTCCCCATA+TGG 0.426625 5_2:+3574872 Msa0750170:CDS
CAGTGGTGTTGGATCTCTCT+TGG 0.433214 5_2:-3574655 None:intergenic
ATTTAGTCACTCTGTTTAGC+AGG 0.433805 5_2:-3575041 None:intergenic
GAAATATGTGGTGGGTCAAA+AGG 0.444489 5_2:+3575163 Msa0750170:three_prime_UTR
GTATTCTCCCAACGCCCATA+TGG 0.453168 5_2:-3574887 None:intergenic
TATTCTCCCAACGCCCATAT+GGG 0.459458 5_2:-3574886 None:intergenic
CTATCTAAAGTGAAATCAAC+AGG 0.464113 5_2:-3574929 None:intergenic
GTCCTCTATTATGTGTTTGG+CGG 0.484806 5_2:+3575330 Msa0750170:three_prime_UTR
ATATTCCCCATATGGGCGTT+GGG 0.489177 5_2:+3574880 Msa0750170:CDS
TTGGTTTGTGAGGAGAAAGT+TGG 0.489942 5_2:+3575233 Msa0750170:three_prime_UTR
TGACTTATGAGTTCGGTGTT+CGG 0.490559 5_2:+3575015 Msa0750170:three_prime_UTR
ATGCTTGATAAATTCTCAAA+TGG 0.493806 5_2:+3574692 Msa0750170:CDS
ATAATAGAGGACACTCTAGT+TGG 0.503188 5_2:-3575319 None:intergenic
CATATTCCCCATATGGGCGT+TGG 0.506392 5_2:+3574879 Msa0750170:CDS
AAGTTTATGACTTATGAGTT+CGG 0.507498 5_2:+3575008 Msa0750170:three_prime_UTR
GCTGCGCGGTGCAGTGGTGT+TGG 0.509005 5_2:-3574666 None:intergenic
ATAAATTCTCAAATGGAGAA+TGG 0.509659 5_2:+3574699 Msa0750170:CDS
CATACAGCTGCGCGGTGCAG+TGG 0.527189 5_2:-3574672 None:intergenic
TTTAAGGTGGTTGGTTTGTG+AGG 0.529431 5_2:+3575223 Msa0750170:three_prime_UTR
CAGAAACATATTCCCCATAT+GGG 0.533568 5_2:+3574873 Msa0750170:CDS
AAAGCAATCATCGTATTTCA+GGG 0.540340 5_2:-3574461 None:intergenic
TTGCATCCAATTTGAGCACA+AGG 0.545698 5_2:+3575081 Msa0750170:three_prime_UTR
TACCGCCAAACACATAATAG+AGG 0.545956 5_2:-3575332 None:intergenic
GAATGGTGACTTTCCGCAAG+AGG 0.565873 5_2:+3574716 Msa0750170:CDS
GCCTTCAACAATACCTCTTG+CGG 0.572976 5_2:-3574729 None:intergenic
AAGAAGAGAACCATGGAGGA+TGG 0.589353 5_2:-3574981 None:intergenic
AAAGGTTGAAATAATTCGAA+CGG 0.602830 5_2:-3574956 None:intergenic
ATTCTCCCAACGCCCATATG+GGG 0.616092 5_2:-3574885 None:intergenic
TTTGTTCAATCCAATTGACA+GGG 0.626549 5_2:+3575193 Msa0750170:three_prime_UTR
GTTCAATCCAATTGACAGGG+AGG 0.635827 5_2:+3575196 Msa0750170:three_prime_UTR
ATCAATGTATGAGAAATATG+TGG 0.674004 5_2:+3575151 Msa0750170:three_prime_UTR
AATGTATGAGAAATATGTGG+TGG 0.684248 5_2:+3575154 Msa0750170:three_prime_UTR
ATGTATGAGAAATATGTGGT+GGG 0.691708 5_2:+3575155 Msa0750170:three_prime_UTR
TTTCAAGAAGAGAACCATGG+AGG 0.696454 5_2:-3574985 None:intergenic
AGGTCTGCAATACATGACGA+CGG 0.735163 5_2:-3574909 None:intergenic
GCAATCATCGTATTTCAGGG+TGG 0.742514 5_2:-3574458 None:intergenic
TTATCAAGCATACAGCTGCG+CGG 0.750861 5_2:-3574680 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGATTTAAAATATATACAT+GGG - chr5_2:3574782-3574801 None:intergenic 10.0%
!!! TATAACAGTAAATATTTTTA+TGG + chr5_2:3575281-3575300 Msa0750170:three_prime_UTR 10.0%
!!! ATAACAGTAAATATTTTTAT+GGG + chr5_2:3575282-3575301 Msa0750170:three_prime_UTR 10.0%
!!! ATGATTTAAAATATATACAT+GGG - chr5_2:3574782-3574801 None:intergenic 10.0%
!!! TATAACAGTAAATATTTTTA+TGG + chr5_2:3575281-3575300 Msa0750170:three_prime_UTR 10.0%
!!! ATAACAGTAAATATTTTTAT+GGG + chr5_2:3575282-3575301 Msa0750170:three_prime_UTR 10.0%
!! AAGTAAGTATTCAATTATTT+GGG - chr5_2:3574541-3574560 None:intergenic 15.0%
!!! CATGATTTAAAATATATACA+TGG - chr5_2:3574783-3574802 None:intergenic 15.0%
!! AAGTAAGTATTCAATTATTT+GGG - chr5_2:3574541-3574560 None:intergenic 15.0%
!!! CATGATTTAAAATATATACA+TGG - chr5_2:3574783-3574802 None:intergenic 15.0%
!! CAAGTAAGTATTCAATTATT+TGG - chr5_2:3574542-3574561 None:intergenic 20.0%
!! AAAATATATACATGGGTAAA+GGG - chr5_2:3574775-3574794 None:intergenic 20.0%
!! TAAAATATATACATGGGTAA+AGG - chr5_2:3574776-3574795 None:intergenic 20.0%
!! CAAGTAAGTATTCAATTATT+TGG - chr5_2:3574542-3574561 None:intergenic 20.0%
!! AAAATATATACATGGGTAAA+GGG - chr5_2:3574775-3574794 None:intergenic 20.0%
!! TAAAATATATACATGGGTAA+AGG - chr5_2:3574776-3574795 None:intergenic 20.0%
! CAGAATCAGGATTATATATA+CGG - chr5_2:3574589-3574608 None:intergenic 25.0%
! ATGCTTGATAAATTCTCAAA+TGG + chr5_2:3574692-3574711 Msa0750170:CDS 25.0%
! ATAAATTCTCAAATGGAGAA+TGG + chr5_2:3574699-3574718 Msa0750170:CDS 25.0%
! AAATATATACATGGGTAAAG+GGG - chr5_2:3574774-3574793 None:intergenic 25.0%
! AAAGGTTGAAATAATTCGAA+CGG - chr5_2:3574959-3574978 None:intergenic 25.0%
! AAGTTTATGACTTATGAGTT+CGG + chr5_2:3575008-3575027 Msa0750170:three_prime_UTR 25.0%
! AACAGAGTGACTAAATTTAT+AGG + chr5_2:3575048-3575067 Msa0750170:three_prime_UTR 25.0%
! ATCAATGTATGAGAAATATG+TGG + chr5_2:3575151-3575170 Msa0750170:three_prime_UTR 25.0%
! TATAAAAACTCTGTTTGTAG+CGG + chr5_2:3575353-3575372 Msa0750170:three_prime_UTR 25.0%
! CAGAATCAGGATTATATATA+CGG - chr5_2:3574589-3574608 None:intergenic 25.0%
! ATGCTTGATAAATTCTCAAA+TGG + chr5_2:3574692-3574711 Msa0750170:CDS 25.0%
! ATAAATTCTCAAATGGAGAA+TGG + chr5_2:3574699-3574718 Msa0750170:CDS 25.0%
! AAATATATACATGGGTAAAG+GGG - chr5_2:3574774-3574793 None:intergenic 25.0%
! AAAGGTTGAAATAATTCGAA+CGG - chr5_2:3574959-3574978 None:intergenic 25.0%
! AAGTTTATGACTTATGAGTT+CGG + chr5_2:3575008-3575027 Msa0750170:three_prime_UTR 25.0%
! AACAGAGTGACTAAATTTAT+AGG + chr5_2:3575048-3575067 Msa0750170:three_prime_UTR 25.0%
! ATCAATGTATGAGAAATATG+TGG + chr5_2:3575151-3575170 Msa0750170:three_prime_UTR 25.0%
! TATAAAAACTCTGTTTGTAG+CGG + chr5_2:3575353-3575372 Msa0750170:three_prime_UTR 25.0%
AAAGCAATCATCGTATTTCA+GGG - chr5_2:3574464-3574483 None:intergenic 30.0%
AAAAGCAATCATCGTATTTC+AGG - chr5_2:3574465-3574484 None:intergenic 30.0%
TATTCTTCTACAACAGAATC+AGG - chr5_2:3574602-3574621 None:intergenic 30.0%
CCTGTTTCATTATATCGAAA+TGG - chr5_2:3574635-3574654 None:intergenic 30.0%
CCATTTCGATATAATGAAAC+AGG + chr5_2:3574632-3574651 Msa0750170:CDS 30.0%
AATATATACATGGGTAAAGG+GGG - chr5_2:3574773-3574792 None:intergenic 30.0%
TGTTACTATTCTACCATTTC+AGG + chr5_2:3574801-3574820 Msa0750170:intron 30.0%
TCTACCATTTCAGGAAATAA+TGG + chr5_2:3574810-3574829 Msa0750170:intron 30.0%
CTACCATTTCAGGAAATAAT+GGG + chr5_2:3574811-3574830 Msa0750170:intron 30.0%
! CTATCTAAAGTGAAATCAAC+AGG - chr5_2:3574932-3574951 None:intergenic 30.0%
!! CTGTTGATTTCACTTTAGAT+AGG + chr5_2:3574930-3574949 Msa0750170:exon 30.0%
AGTTGTGTATTTGTAGTCAT+TGG + chr5_2:3575109-3575128 Msa0750170:three_prime_UTR 30.0%
AATGTATGAGAAATATGTGG+TGG + chr5_2:3575154-3575173 Msa0750170:three_prime_UTR 30.0%
ATGTATGAGAAATATGTGGT+GGG + chr5_2:3575155-3575174 Msa0750170:three_prime_UTR 30.0%
! TTTTGTTCAATCCAATTGAC+AGG + chr5_2:3575192-3575211 Msa0750170:three_prime_UTR 30.0%
TTTGTTCAATCCAATTGACA+GGG + chr5_2:3575193-3575212 Msa0750170:three_prime_UTR 30.0%
AAAGCAATCATCGTATTTCA+GGG - chr5_2:3574464-3574483 None:intergenic 30.0%
AAAAGCAATCATCGTATTTC+AGG - chr5_2:3574465-3574484 None:intergenic 30.0%
TATTCTTCTACAACAGAATC+AGG - chr5_2:3574602-3574621 None:intergenic 30.0%
CCTGTTTCATTATATCGAAA+TGG - chr5_2:3574635-3574654 None:intergenic 30.0%
CCATTTCGATATAATGAAAC+AGG + chr5_2:3574632-3574651 Msa0750170:CDS 30.0%
AATATATACATGGGTAAAGG+GGG - chr5_2:3574773-3574792 None:intergenic 30.0%
TGTTACTATTCTACCATTTC+AGG + chr5_2:3574801-3574820 Msa0750170:intron 30.0%
TCTACCATTTCAGGAAATAA+TGG + chr5_2:3574810-3574829 Msa0750170:intron 30.0%
CTACCATTTCAGGAAATAAT+GGG + chr5_2:3574811-3574830 Msa0750170:intron 30.0%
! CTATCTAAAGTGAAATCAAC+AGG - chr5_2:3574932-3574951 None:intergenic 30.0%
!! CTGTTGATTTCACTTTAGAT+AGG + chr5_2:3574930-3574949 Msa0750170:exon 30.0%
AGTTGTGTATTTGTAGTCAT+TGG + chr5_2:3575109-3575128 Msa0750170:three_prime_UTR 30.0%
AATGTATGAGAAATATGTGG+TGG + chr5_2:3575154-3575173 Msa0750170:three_prime_UTR 30.0%
ATGTATGAGAAATATGTGGT+GGG + chr5_2:3575155-3575174 Msa0750170:three_prime_UTR 30.0%
! TTTTGTTCAATCCAATTGAC+AGG + chr5_2:3575192-3575211 Msa0750170:three_prime_UTR 30.0%
TTTGTTCAATCCAATTGACA+GGG + chr5_2:3575193-3575212 Msa0750170:three_prime_UTR 30.0%
ATATATACATGGGTAAAGGG+GGG - chr5_2:3574772-3574791 None:intergenic 35.0%
ACTCCCATTATTTCCTGAAA+TGG - chr5_2:3574817-3574836 None:intergenic 35.0%
ACAGAAACATATTCCCCATA+TGG + chr5_2:3574872-3574891 Msa0750170:CDS 35.0%
CAGAAACATATTCCCCATAT+GGG + chr5_2:3574873-3574892 Msa0750170:CDS 35.0%
!!! CTTTTTCAAGAAGAGAACCA+TGG - chr5_2:3574991-3575010 None:intergenic 35.0%
ATTTAGTCACTCTGTTTAGC+AGG - chr5_2:3575044-3575063 None:intergenic 35.0%
AAAATATCCTCCCTGTCAAT+TGG - chr5_2:3575206-3575225 None:intergenic 35.0%
! TTGACAGGGAGGATATTTTA+AGG + chr5_2:3575207-3575226 Msa0750170:three_prime_UTR 35.0%
ATAATAGAGGACACTCTAGT+TGG - chr5_2:3575322-3575341 None:intergenic 35.0%
AGTGTCCTCTATTATGTGTT+TGG + chr5_2:3575327-3575346 Msa0750170:three_prime_UTR 35.0%
ATATATACATGGGTAAAGGG+GGG - chr5_2:3574772-3574791 None:intergenic 35.0%
ACTCCCATTATTTCCTGAAA+TGG - chr5_2:3574817-3574836 None:intergenic 35.0%
ACAGAAACATATTCCCCATA+TGG + chr5_2:3574872-3574891 Msa0750170:CDS 35.0%
CAGAAACATATTCCCCATAT+GGG + chr5_2:3574873-3574892 Msa0750170:CDS 35.0%
!!! CTTTTTCAAGAAGAGAACCA+TGG - chr5_2:3574991-3575010 None:intergenic 35.0%
ATTTAGTCACTCTGTTTAGC+AGG - chr5_2:3575044-3575063 None:intergenic 35.0%
AAAATATCCTCCCTGTCAAT+TGG - chr5_2:3575206-3575225 None:intergenic 35.0%
! TTGACAGGGAGGATATTTTA+AGG + chr5_2:3575207-3575226 Msa0750170:three_prime_UTR 35.0%
ATAATAGAGGACACTCTAGT+TGG - chr5_2:3575322-3575341 None:intergenic 35.0%
AGTGTCCTCTATTATGTGTT+TGG + chr5_2:3575327-3575346 Msa0750170:three_prime_UTR 35.0%
TATATACATGGGTAAAGGGG+GGG - chr5_2:3574771-3574790 None:intergenic 40.0%
TTTCAAGAAGAGAACCATGG+AGG - chr5_2:3574988-3575007 None:intergenic 40.0%
!! TGACTTATGAGTTCGGTGTT+CGG + chr5_2:3575015-3575034 Msa0750170:three_prime_UTR 40.0%
TTGCATCCAATTTGAGCACA+AGG + chr5_2:3575081-3575100 Msa0750170:three_prime_UTR 40.0%
!! GAAATATGTGGTGGGTCAAA+AGG + chr5_2:3575163-3575182 Msa0750170:three_prime_UTR 40.0%
!! ACAGGGAGGATATTTTAAGG+TGG + chr5_2:3575210-3575229 Msa0750170:three_prime_UTR 40.0%
!!! GGAGGATATTTTAAGGTGGT+TGG + chr5_2:3575214-3575233 Msa0750170:three_prime_UTR 40.0%
!! TTTAAGGTGGTTGGTTTGTG+AGG + chr5_2:3575223-3575242 Msa0750170:three_prime_UTR 40.0%
!! TTGGTTTGTGAGGAGAAAGT+TGG + chr5_2:3575233-3575252 Msa0750170:three_prime_UTR 40.0%
GTCCTCTATTATGTGTTTGG+CGG + chr5_2:3575330-3575349 Msa0750170:three_prime_UTR 40.0%
TACCGCCAAACACATAATAG+AGG - chr5_2:3575335-3575354 None:intergenic 40.0%
TATATACATGGGTAAAGGGG+GGG - chr5_2:3574771-3574790 None:intergenic 40.0%
TTTCAAGAAGAGAACCATGG+AGG - chr5_2:3574988-3575007 None:intergenic 40.0%
!! TGACTTATGAGTTCGGTGTT+CGG + chr5_2:3575015-3575034 Msa0750170:three_prime_UTR 40.0%
TTGCATCCAATTTGAGCACA+AGG + chr5_2:3575081-3575100 Msa0750170:three_prime_UTR 40.0%
!! GAAATATGTGGTGGGTCAAA+AGG + chr5_2:3575163-3575182 Msa0750170:three_prime_UTR 40.0%
!! ACAGGGAGGATATTTTAAGG+TGG + chr5_2:3575210-3575229 Msa0750170:three_prime_UTR 40.0%
!!! GGAGGATATTTTAAGGTGGT+TGG + chr5_2:3575214-3575233 Msa0750170:three_prime_UTR 40.0%
!! TTTAAGGTGGTTGGTTTGTG+AGG + chr5_2:3575223-3575242 Msa0750170:three_prime_UTR 40.0%
!! TTGGTTTGTGAGGAGAAAGT+TGG + chr5_2:3575233-3575252 Msa0750170:three_prime_UTR 40.0%
GTCCTCTATTATGTGTTTGG+CGG + chr5_2:3575330-3575349 Msa0750170:three_prime_UTR 40.0%
TACCGCCAAACACATAATAG+AGG - chr5_2:3575335-3575354 None:intergenic 40.0%
GCAATCATCGTATTTCAGGG+TGG - chr5_2:3574461-3574480 None:intergenic 45.0%
TATAGAAACCCAGAACGCAG+TGG - chr5_2:3574495-3574514 None:intergenic 45.0%
TTATCAAGCATACAGCTGCG+CGG - chr5_2:3574683-3574702 None:intergenic 45.0%
!! TCCGCAAGAGGTATTGTTGA+AGG + chr5_2:3574728-3574747 Msa0750170:intron 45.0%
GCCTTCAACAATACCTCTTG+CGG - chr5_2:3574732-3574751 None:intergenic 45.0%
GGGGGGTAAAAACAGAGATA+TGG - chr5_2:3574754-3574773 None:intergenic 45.0%
ATATTCCCCATATGGGCGTT+GGG + chr5_2:3574880-3574899 Msa0750170:CDS 45.0%
TATTCTCCCAACGCCCATAT+GGG - chr5_2:3574889-3574908 None:intergenic 45.0%
AGGTCTGCAATACATGACGA+CGG - chr5_2:3574912-3574931 None:intergenic 45.0%
! CAACCTTTTACCATCCTCCA+TGG + chr5_2:3574971-3574990 Msa0750170:three_prime_UTR 45.0%
GAACCATGGAGGATGGTAAA+AGG - chr5_2:3574977-3574996 None:intergenic 45.0%
AAGAAGAGAACCATGGAGGA+TGG - chr5_2:3574984-3575003 None:intergenic 45.0%
TGTGCTCCTTGTGCTCAAAT+TGG - chr5_2:3575090-3575109 None:intergenic 45.0%
GTTCAATCCAATTGACAGGG+AGG + chr5_2:3575196-3575215 Msa0750170:three_prime_UTR 45.0%
GCAATCATCGTATTTCAGGG+TGG - chr5_2:3574461-3574480 None:intergenic 45.0%
TATAGAAACCCAGAACGCAG+TGG - chr5_2:3574495-3574514 None:intergenic 45.0%
TTATCAAGCATACAGCTGCG+CGG - chr5_2:3574683-3574702 None:intergenic 45.0%
!! TCCGCAAGAGGTATTGTTGA+AGG + chr5_2:3574728-3574747 Msa0750170:intron 45.0%
GCCTTCAACAATACCTCTTG+CGG - chr5_2:3574732-3574751 None:intergenic 45.0%
GGGGGGTAAAAACAGAGATA+TGG - chr5_2:3574754-3574773 None:intergenic 45.0%
ATATTCCCCATATGGGCGTT+GGG + chr5_2:3574880-3574899 Msa0750170:CDS 45.0%
TATTCTCCCAACGCCCATAT+GGG - chr5_2:3574889-3574908 None:intergenic 45.0%
AGGTCTGCAATACATGACGA+CGG - chr5_2:3574912-3574931 None:intergenic 45.0%
! CAACCTTTTACCATCCTCCA+TGG + chr5_2:3574971-3574990 Msa0750170:three_prime_UTR 45.0%
GAACCATGGAGGATGGTAAA+AGG - chr5_2:3574977-3574996 None:intergenic 45.0%
AAGAAGAGAACCATGGAGGA+TGG - chr5_2:3574984-3575003 None:intergenic 45.0%
TGTGCTCCTTGTGCTCAAAT+TGG - chr5_2:3575090-3575109 None:intergenic 45.0%
GTTCAATCCAATTGACAGGG+AGG + chr5_2:3575196-3575215 Msa0750170:three_prime_UTR 45.0%
TTCTGTTTGCCACTGCGTTC+TGG + chr5_2:3574483-3574502 Msa0750170:intron 50.0%
TCTGTTTGCCACTGCGTTCT+GGG + chr5_2:3574484-3574503 Msa0750170:intron 50.0%
! CAGTGGTGTTGGATCTCTCT+TGG - chr5_2:3574658-3574677 None:intergenic 50.0%
GAATGGTGACTTTCCGCAAG+AGG + chr5_2:3574716-3574735 Msa0750170:CDS 50.0%
CATATTCCCCATATGGGCGT+TGG + chr5_2:3574879-3574898 Msa0750170:CDS 50.0%
ATTCTCCCAACGCCCATATG+GGG - chr5_2:3574888-3574907 None:intergenic 50.0%
GTATTCTCCCAACGCCCATA+TGG - chr5_2:3574890-3574909 None:intergenic 50.0%
TTCTGTTTGCCACTGCGTTC+TGG + chr5_2:3574483-3574502 Msa0750170:intron 50.0%
TCTGTTTGCCACTGCGTTCT+GGG + chr5_2:3574484-3574503 Msa0750170:intron 50.0%
! CAGTGGTGTTGGATCTCTCT+TGG - chr5_2:3574658-3574677 None:intergenic 50.0%
GAATGGTGACTTTCCGCAAG+AGG + chr5_2:3574716-3574735 Msa0750170:CDS 50.0%
CATATTCCCCATATGGGCGT+TGG + chr5_2:3574879-3574898 Msa0750170:CDS 50.0%
ATTCTCCCAACGCCCATATG+GGG - chr5_2:3574888-3574907 None:intergenic 50.0%
GTATTCTCCCAACGCCCATA+TGG - chr5_2:3574890-3574909 None:intergenic 50.0%
CATACAGCTGCGCGGTGCAG+TGG - chr5_2:3574675-3574694 None:intergenic 65.0%
CATACAGCTGCGCGGTGCAG+TGG - chr5_2:3574675-3574694 None:intergenic 65.0%
GCTGCGCGGTGCAGTGGTGT+TGG - chr5_2:3574669-3574688 None:intergenic 70.0%
GCTGCGCGGTGCAGTGGTGT+TGG - chr5_2:3574669-3574688 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3574430 3575422 3574430 ID=Msa0750170;Name=Msa0750170
chr5_2 mRNA 3574430 3575422 3574430 ID=Msa0750170-mRNA-1;Parent=Msa0750170;Name=Msa0750170-mRNA-1;_AED=0.45;_eAED=0.47;_QI=0|0.5|0.33|0.66|1|1|3|486|97
chr5_2 exon 3574430 3574486 3574430 ID=Msa0750170-mRNA-1:exon:1290;Parent=Msa0750170-mRNA-1
chr5_2 exon 3574615 3574737 3574615 ID=Msa0750170-mRNA-1:exon:1291;Parent=Msa0750170-mRNA-1
chr5_2 exon 3574823 3575422 3574823 ID=Msa0750170-mRNA-1:exon:1292;Parent=Msa0750170-mRNA-1
chr5_2 CDS 3574430 3574486 3574430 ID=Msa0750170-mRNA-1:cds;Parent=Msa0750170-mRNA-1
chr5_2 CDS 3574615 3574737 3574615 ID=Msa0750170-mRNA-1:cds;Parent=Msa0750170-mRNA-1
chr5_2 CDS 3574823 3574936 3574823 ID=Msa0750170-mRNA-1:cds;Parent=Msa0750170-mRNA-1
chr5_2 three_prime_UTR 3574937 3575422 3574937 ID=Msa0750170-mRNA-1:three_prime_utr;Parent=Msa0750170-mRNA-1
Gene Sequence

>Msa0750170

ATGGCTCTTTACTTTTCTGTTATGCTTGCCACCCTGAAATACGATGATTGCTTTTCTAAGAATAAAAATGATATCCATTTCGATATAATGAAACAGGCCAAGAGAGATCCAACACCACTGCACCGCGCAGCTGTATGCTTGATAAATTCTCAAATGGAGAATGGTGACTTTCCGCAAGAGGAAATAATGGGAGTCTTCAACAAGAATTGCATGATCACTTATGCTGCATACAGAAACATATTCCCCATATGGGCGTTGGGAGAATACCGTCGTCATGTATTGCAGACCTGTTGA

Protein sequence

>Msa0750170

MALYFSVMLATLKYDDCFSKNKNDIHFDIMKQAKRDPTPLHRAAVCLINSQMENGDFPQEEIMGVFNKNCMITYAAYRNIFPIWALGEYRRHVLQTC*