AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0485120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485120 MtrunA17_Chr5g0418911 98.907 366 4 0 1 366 1 366 0.0 735
Msa0485120 MtrunA17_Chr1g0212851 36.675 379 190 8 24 366 83 447 1.75e-69 224
Msa0485120 MtrunA17_Chr8g0369371 46.023 176 92 3 22 196 57 230 2.80e-43 150
Msa0485120 MtrunA17_Chr8g0369381 40.816 98 56 1 265 362 61 156 3.19e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0485120 AT1G26520.1 72.853 361 92 2 4 361 13 370 0.0 539
Msa0485120 AT1G15730.1 38.544 371 185 7 24 362 86 445 4.27e-76 242
Msa0485120 AT1G80480.1 37.435 382 197 7 12 362 71 441 5.20e-74 236

Find 90 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTAAAGTAACATGTTAAT+TGG 0.083650 3_4:+2658461 None:intergenic
GTCTTCATCGTGTTCCATTT+TGG 0.184628 3_4:+2664493 None:intergenic
AATAAATTAACACACTAATT+TGG 0.196004 3_4:+2658729 None:intergenic
CACCTTTGGCATCTATTCTT+TGG 0.207860 3_4:-2662950 Msa0485120:CDS
ATTAAAGTAACATGTTAATT+GGG 0.273975 3_4:+2658462 None:intergenic
AATGAGTTTGGTGAGGAAAT+TGG 0.300166 3_4:-2663618 Msa0485120:CDS
CTACGAGTGTGTTAATGTTA+TGG 0.302882 3_4:+2661975 None:intergenic
ACACATCAACTCCTCCAAAA+TGG 0.316843 3_4:-2664507 Msa0485120:exon
TATGGCTAGAGGAGATTCTT+TGG 0.317773 3_4:-2661286 Msa0485120:CDS
TGATGAATTGCATACTTTGC+AGG 0.320221 3_4:-2661204 Msa0485120:intron
ATGAATAAGATAGTATTTAT+AGG 0.327529 3_4:-2658957 Msa0485120:intron
AATTCTTAACAAGGTTGATT+TGG 0.330079 3_4:-2662044 Msa0485120:CDS
TTGGGAGAAGAAATATGATA+TGG 0.330619 3_4:-2661267 Msa0485120:CDS
AACAGAAGATTGTTGAGAAA+TGG 0.344084 3_4:+2664421 None:intergenic
TTTGGCTAATCCAGCACCTT+TGG 0.352272 3_4:-2662964 Msa0485120:CDS
GAGCTTTCAAGCCATTGATT+AGG 0.361287 3_4:+2658831 None:intergenic
AAACAAATACGCAGCCTAAC+AGG 0.366244 3_4:+2658802 None:intergenic
TCTCCAACACCCACTCTTGT+TGG 0.367777 3_4:-2658378 Msa0485120:three_prime_UTR
GCTGTGATATTGAATGAGTT+TGG 0.371555 3_4:-2663630 Msa0485120:CDS
GCTATCTGAAAATATGCTTC+AGG 0.372809 3_4:+2662419 None:intergenic
CGCGTCCTACACTTTGGAAA+TGG 0.373940 3_4:-2658343 Msa0485120:three_prime_UTR
ACTCTCATCACTGGTTATCT+TGG 0.383465 3_4:-2664392 Msa0485120:CDS
AACCATGGCAGACTCGTATA+TGG 0.384207 3_4:-2661304 Msa0485120:intron
CAGTAGCTTCCAGCAATATA+TGG 0.413428 3_4:+2662988 None:intergenic
TTTGGCATCTATTCTTTGGT+TGG 0.414831 3_4:-2662946 Msa0485120:CDS
TTCTCTGCACAAGCTGCTCA+AGG 0.418476 3_4:+2663484 None:intergenic
TAGGCTAGACCATATATTGC+TGG 0.419326 3_4:-2662997 Msa0485120:CDS
AGAATAGATGCCAAAGGTGC+TGG 0.420889 3_4:+2662954 None:intergenic
TTGGTATCTGCAGAAGGCTC+TGG 0.429405 3_4:-2662025 Msa0485120:CDS
AGTGGAAGAAAGAAGAAAAC+AGG 0.433205 3_4:-2658980 Msa0485120:CDS
ATGGCTAGAGGAGATTCTTT+GGG 0.440901 3_4:-2661285 Msa0485120:CDS
TTGCACGGTTAAGCATAGTT+TGG 0.445784 3_4:-2663514 Msa0485120:CDS
ATTGCTGGAAGCTACTGGTT+TGG 0.456630 3_4:-2662982 Msa0485120:CDS
ATCACTGGTTATCTTGGTGC+TGG 0.459836 3_4:-2664386 Msa0485120:CDS
TCCTGTCTCACAGATGCATA+TGG 0.462060 3_4:+2661714 None:intergenic
GAAAGAGCATTGATAAATGA+AGG 0.462576 3_4:-2663591 Msa0485120:CDS
GAAAGCTCTTGCAACCTGTT+AGG 0.464002 3_4:-2658816 Msa0485120:exon
AACTCAACATTGATGAATCA+AGG 0.464542 3_4:+2658491 None:intergenic
AAAGAAGATGTCCTAATCAA+TGG 0.473604 3_4:-2658842 Msa0485120:CDS
CATATATTGCTGGAAGCTAC+TGG 0.474771 3_4:-2662987 Msa0485120:CDS
TGCGTATTTGTTTCCTTGTG+TGG 0.476019 3_4:-2658792 Msa0485120:three_prime_UTR
AGCCACGGTGCTCCTTGAGC+TGG 0.477134 3_4:+2662453 None:intergenic
GTGGTGCAGTTGTTGAAGAA+TGG 0.477782 3_4:-2663563 Msa0485120:CDS
TCTTTGGTTGGATGAACAGT+TGG 0.479469 3_4:-2662934 Msa0485120:CDS
GTAGTGTTGTGTTAGTTACT+AGG 0.479845 3_4:-2658678 Msa0485120:three_prime_UTR
GTTGGTGTCACTCTCATCAC+TGG 0.482192 3_4:-2664401 Msa0485120:CDS
TGGTGCAGTTGTTGAAGAAT+GGG 0.484968 3_4:-2663562 Msa0485120:CDS
TCTTTCTTCCACTTTCGAGC+AGG 0.486547 3_4:+2658990 None:intergenic
GCGTATTTGTTTCCTTGTGT+GGG 0.493778 3_4:-2658791 Msa0485120:three_prime_UTR
TTAAAGTAACATGTTAATTG+GGG 0.496983 3_4:+2658463 None:intergenic
AGATCGTTCCTGCTCGAAAG+TGG 0.500025 3_4:-2658998 Msa0485120:CDS
GAATGGGTTGAACTTGCTAA+TGG 0.500533 3_4:-2663546 Msa0485120:CDS
ACCATATGCATCTGTGAGAC+AGG 0.503064 3_4:-2661715 Msa0485120:CDS
ATTTCTCAACAATCTTCTGT+TGG 0.503553 3_4:-2664419 Msa0485120:CDS
TCAATGCGCGTCCTACACTT+TGG 0.508215 3_4:-2658349 Msa0485120:three_prime_UTR
AGGAACAGTTGATCTTGATA+AGG 0.543424 3_4:-2661695 Msa0485120:intron
TCTCTGCACAAGCTGCTCAA+GGG 0.549355 3_4:+2663485 None:intergenic
TGAACTCTCAACATGGGAAG+AGG 0.549391 3_4:-2663656 Msa0485120:CDS
AAATGTTCGCTTCCAGCTCA+AGG 0.553773 3_4:-2662465 Msa0485120:CDS
TTGATAAATGAAGGGGAAAG+TGG 0.553774 3_4:-2663582 Msa0485120:CDS
CATATATTGAACTCTCAACA+TGG 0.555523 3_4:-2663663 Msa0485120:CDS
TTGATTTAAACCAACAAGAG+TGG 0.565582 3_4:+2658368 None:intergenic
TGGTTGAATCTCGCAATCAT+CGG 0.566053 3_4:+2658749 None:intergenic
AGAAGGCTCTGGAGCTCTAG+AGG 0.581340 3_4:-2662014 Msa0485120:CDS
CATTTAAGACTCCTTTGCAA+CGG 0.583923 3_4:+2661237 None:intergenic
GTTGATTTGGTATCTGCAGA+AGG 0.585096 3_4:-2662031 Msa0485120:CDS
TAATGGCTGTATTTGTTGCA+CGG 0.589197 3_4:-2663529 Msa0485120:CDS
TGATTTAAACCAACAAGAGT+GGG 0.591681 3_4:+2658369 None:intergenic
AAAGAGCATTGATAAATGAA+GGG 0.594588 3_4:-2663590 Msa0485120:CDS
GGACATTGTAATTCTTAACA+AGG 0.607377 3_4:-2662053 Msa0485120:CDS
AAACCAACAAGAGTGGGTGT+TGG 0.608339 3_4:+2658375 None:intergenic
AAGAGCATTGATAAATGAAG+GGG 0.611247 3_4:-2663589 Msa0485120:CDS
AAGTTCCATTTCCAAAGTGT+AGG 0.615904 3_4:+2658338 None:intergenic
ATGGATGTATACCGTTGCAA+AGG 0.617207 3_4:-2661248 Msa0485120:CDS
TCTTGGTGCTGGCAAATCCA+CGG 0.620578 3_4:-2664375 Msa0485120:intron
CTGCAGTATCGTAAGCGTGG+CGG 0.624449 3_4:+2661903 None:intergenic
ATATATTGAACTCTCAACAT+GGG 0.629606 3_4:-2663662 Msa0485120:CDS
TGTTGAATCTCAACAGCAAG+AGG 0.636495 3_4:+2664461 None:intergenic
TGAATCTCAACAGCAAGAGG+TGG 0.637466 3_4:+2664464 None:intergenic
GCAGACTCGTATATGGCTAG+AGG 0.641181 3_4:-2661297 Msa0485120:intron
AGCTTGTGCAGAGAAAAGAA+AGG 0.645456 3_4:-2663476 Msa0485120:intron
CAGGAAATGAAGATGAGCCA+CGG 0.651825 3_4:+2662438 None:intergenic
GTTTGGTGAGGAAATTGGAG+TGG 0.654078 3_4:-2663613 Msa0485120:CDS
AGCTCTAGAGGAACTCGAGG+AGG 0.659807 3_4:-2662002 Msa0485120:CDS
AACCAAAGAATAGATGCCAA+AGG 0.660580 3_4:+2662948 None:intergenic
TTACTGCAGTATCGTAAGCG+TGG 0.673945 3_4:+2661900 None:intergenic
TGGAGCTCTAGAGGAACTCG+AGG 0.681621 3_4:-2662005 Msa0485120:CDS
TTAATATTTATACCCACACA+AGG 0.684499 3_4:+2658779 None:intergenic
GATATTGAATGAGTTTGGTG+AGG 0.685395 3_4:-2663625 Msa0485120:CDS
TTCCAGCTCAAGGAGCACCG+TGG 0.718846 3_4:-2662455 Msa0485120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTTTTAGATTTTATTTT+TGG + chr3_4:2659016-2659035 None:intergenic 10.0%
!!! TTAACTTTTATATTTTGAAA+AGG - chr3_4:2663441-2663460 Msa0485120:intron 10.0%
!!! TTTTTTTTATAGACAAATTT+TGG - chr3_4:2664149-2664168 Msa0485120:intron 10.0%
!!! TTCATTTTCTTTTTTGTTAT+TGG - chr3_4:2658571-2658590 Msa0485120:three_prime_UTR 15.0%
!!! TCATTTTCTTTTTTGTTATT+GGG - chr3_4:2658572-2658591 Msa0485120:three_prime_UTR 15.0%
!!! AAGTATTTTTTAATTGGATT+TGG - chr3_4:2658724-2658743 Msa0485120:three_prime_UTR 15.0%
!!! AACAAATTATTCAAATTTTG+AGG - chr3_4:2659414-2659433 Msa0485120:intron 15.0%
!! TATTTATAAGAGATTCAAAA+GGG + chr3_4:2659773-2659792 None:intergenic 15.0%
!!! TAGTTCAATTAAACATTTTT+AGG - chr3_4:2659824-2659843 Msa0485120:intron 15.0%
!!! ATTGTTTGTTATATATTAAC+TGG - chr3_4:2660471-2660490 Msa0485120:intron 15.0%
!! TATTTAGTGTACTATTTATA+AGG - chr3_4:2661779-2661798 Msa0485120:CDS 15.0%
!!! AATTAATTCATTTGTTGTTT+GGG - chr3_4:2661909-2661928 Msa0485120:CDS 15.0%
!! TGAGATGTTTATAAAAATAT+TGG - chr3_4:2662710-2662729 Msa0485120:intron 15.0%
!!! TTAAAAAAAACAGAATTTTC+AGG + chr3_4:2662939-2662958 None:intergenic 15.0%
!! TAAATACTATCTTAGAATTT+GGG + chr3_4:2662979-2662998 None:intergenic 15.0%
!! TTTAGATAAATTAGACATTA+TGG - chr3_4:2663374-2663393 Msa0485120:intron 15.0%
!! TTAGATAAATTAGACATTAT+GGG - chr3_4:2663375-2663394 Msa0485120:intron 15.0%
!! TAAATCATTTGATTGATATT+TGG - chr3_4:2663512-2663531 Msa0485120:CDS 15.0%
!! ATCAAAACTCAAATATTATA+TGG + chr3_4:2663788-2663807 None:intergenic 15.0%
!! ATGAATAAGATAGTATTTAT+AGG - chr3_4:2663900-2663919 Msa0485120:intron 15.0%
!!! ATGTTTATTTTTTGATTAAC+AGG - chr3_4:2663982-2664001 Msa0485120:intron 15.0%
!! AATAAATTAACACACTAATT+TGG + chr3_4:2664131-2664150 None:intergenic 15.0%
!! ATTAAAGTAACATGTTAATT+GGG + chr3_4:2664398-2664417 None:intergenic 15.0%
!! AATTAAAGTAACATGTTAAT+TGG + chr3_4:2664399-2664418 None:intergenic 15.0%
!! TATAGAAAGGGAAAATTAAT+GGG + chr3_4:2658511-2658530 None:intergenic 20.0%
!! TTATAGAAAGGGAAAATTAA+TGG + chr3_4:2658512-2658531 None:intergenic 20.0%
!! AAAGAAAATGAAAGTGAAAA+AGG + chr3_4:2658563-2658582 None:intergenic 20.0%
!!! CAGTGTAAGTATTTTTTAAT+TGG - chr3_4:2658718-2658737 Msa0485120:three_prime_UTR 20.0%
!! AATCTAAAAAGAAATCTTAC+AGG - chr3_4:2659023-2659042 Msa0485120:intron 20.0%
!! ATCTAAAAAGAAATCTTACA+GGG - chr3_4:2659024-2659043 Msa0485120:intron 20.0%
!! ATTTATAAGAGATTCAAAAG+GGG + chr3_4:2659772-2659791 None:intergenic 20.0%
!! CTATTTATAAGAGATTCAAA+AGG + chr3_4:2659774-2659793 None:intergenic 20.0%
!!! CTTCTATATCTTTTTTTTTG+TGG + chr3_4:2660561-2660580 None:intergenic 20.0%
!! TTTATATCATGTTTAAACCA+TGG - chr3_4:2661538-2661557 Msa0485120:intron 20.0%
!!! CAATTAATTCATTTGTTGTT+TGG - chr3_4:2661908-2661927 Msa0485120:CDS 20.0%
!!! GCTATATGTTGATTTTAATT+AGG - chr3_4:2662234-2662253 Msa0485120:intron 20.0%
!!! TTTGAAGTTTTAGTAAATGT+AGG - chr3_4:2662652-2662671 Msa0485120:intron 20.0%
!! TGTTTATAAAAATATTGGCA+TGG - chr3_4:2662715-2662734 Msa0485120:intron 20.0%
!!! TTTGTTTTGAGAGTTTATAT+TGG - chr3_4:2662865-2662884 Msa0485120:intron 20.0%
!! CCTGAAAAACATTTATAAAT+CGG - chr3_4:2662901-2662920 Msa0485120:intron 20.0%
!! AAATACTATCTTAGAATTTG+GGG + chr3_4:2662978-2662997 None:intergenic 20.0%
!! CTAAATACTATCTTAGAATT+TGG + chr3_4:2662980-2662999 None:intergenic 20.0%
!!! AAGATTCTAAAGTTACTAAA+TGG + chr3_4:2663322-2663341 None:intergenic 20.0%
!!! TGTCTAATTTATCTAAAACT+TGG + chr3_4:2663371-2663390 None:intergenic 20.0%
!! ATTTAATCTTGTGGTTTATT+TGG - chr3_4:2663399-2663418 Msa0485120:intron 20.0%
!! ATTTATTTCACTATTATCGT+CGG + chr3_4:2663570-2663589 None:intergenic 20.0%
!! AACTCAAATATTATATGGAA+GGG + chr3_4:2663783-2663802 None:intergenic 20.0%
!! AAACTCAAATATTATATGGA+AGG + chr3_4:2663784-2663803 None:intergenic 20.0%
!!! AGTACTTATGTTAGTTTTTA+AGG - chr3_4:2664227-2664246 Msa0485120:intron 20.0%
!!! AATAACTTTTAAGAGGTTTA+GGG + chr3_4:2664266-2664285 None:intergenic 20.0%
!!! AAATAACTTTTAAGAGGTTT+AGG + chr3_4:2664267-2664286 None:intergenic 20.0%
!!! CATTACAAATAACTTTTAAG+AGG + chr3_4:2664273-2664292 None:intergenic 20.0%
!! TTAAAGTAACATGTTAATTG+GGG + chr3_4:2664397-2664416 None:intergenic 20.0%
! CCAGTTAGAAATTATAGAAA+GGG + chr3_4:2658523-2658542 None:intergenic 25.0%
! CCTTTCTATAATTTCTAACT+GGG - chr3_4:2658521-2658540 Msa0485120:three_prime_UTR 25.0%
! CTATTATTTCAACAAGCTAT+AGG + chr3_4:2658605-2658624 None:intergenic 25.0%
!! TTTTTGGATGATAAATGATG+TGG + chr3_4:2659000-2659019 None:intergenic 25.0%
!! CTTACAATTATAGTGTTGTT+TGG + chr3_4:2659057-2659076 None:intergenic 25.0%
! CAAACAACACTATAATTGTA+AGG - chr3_4:2659055-2659074 Msa0485120:intron 25.0%
! ATTCCATATCACAAAATCAT+TGG + chr3_4:2659139-2659158 None:intergenic 25.0%
! ATATATTGAACTCTCAACAT+GGG - chr3_4:2659195-2659214 Msa0485120:intron 25.0%
!!! AAAGAGCATTGATAAATGAA+GGG - chr3_4:2659267-2659286 Msa0485120:intron 25.0%
! ATAACCAACAATAAGGATAA+GGG + chr3_4:2659523-2659542 None:intergenic 25.0%
! TATATGCATAACCAACAATA+AGG + chr3_4:2659530-2659549 None:intergenic 25.0%
! TTATAAATAGATGCAGTGTT+CGG - chr3_4:2659784-2659803 Msa0485120:intron 25.0%
!! TTTAGGTATTTTGTGTTTGT+AGG - chr3_4:2659841-2659860 Msa0485120:intron 25.0%
!! ACATTTTATAGTACTTGTCA+TGG - chr3_4:2660206-2660225 Msa0485120:intron 25.0%
!! TCTTGTTAATTTTGTGATAG+TGG - chr3_4:2660249-2660268 Msa0485120:intron 25.0%
! AGCTTCTATCAACATATAAA+AGG + chr3_4:2660283-2660302 None:intergenic 25.0%
!! ATATTTTCAGATAGCATTTG+CGG - chr3_4:2660446-2660465 Msa0485120:intron 25.0%
! GACATCAATTTAATGAGAAA+AGG + chr3_4:2660511-2660530 None:intergenic 25.0%
!! AATTCTTAACAAGGTTGATT+TGG - chr3_4:2660813-2660832 Msa0485120:intron 25.0%
! TACTTTATTAGAAGCTATAC+AGG + chr3_4:2661259-2661278 None:intergenic 25.0%
! TGCATTTAGTATTAGGAAAA+TGG - chr3_4:2661315-2661334 Msa0485120:intron 25.0%
! AATTAAGTTTGCATTTGCAT+TGG - chr3_4:2661731-2661750 Msa0485120:CDS 25.0%
! AGTTATAACAGAAAAGCTAA+AGG + chr3_4:2661972-2661991 None:intergenic 25.0%
! AATTCTGTTAGAATGATTCT+CGG - chr3_4:2662001-2662020 Msa0485120:CDS 25.0%
! TCTTTAATTAGAGATGAATC+TGG + chr3_4:2662331-2662350 None:intergenic 25.0%
! TTATAAAAATATTGGCATGG+TGG - chr3_4:2662718-2662737 Msa0485120:intron 25.0%
! ACTATCTATTCTTACACATA+TGG + chr3_4:2662836-2662855 None:intergenic 25.0%
!! CCGATTTATAAATGTTTTTC+AGG + chr3_4:2662904-2662923 None:intergenic 25.0%
! GAAAAACATTTATAAATCGG+AGG - chr3_4:2662904-2662923 Msa0485120:CDS 25.0%
! AGTATTTAGACCTTAGTTAT+AGG - chr3_4:2662991-2663010 Msa0485120:CDS 25.0%
! GTATTTAGACCTTAGTTATA+GGG - chr3_4:2662992-2663011 Msa0485120:CDS 25.0%
! ATGCTTCAAATGTAAAATCT+TGG - chr3_4:2663026-2663045 Msa0485120:intron 25.0%
! TGCTTCAAATGTAAAATCTT+GGG - chr3_4:2663027-2663046 Msa0485120:intron 25.0%
! AGTCTTCATTAGATGTAATA+TGG - chr3_4:2663070-2663089 Msa0485120:intron 25.0%
!! CTAGTAACACTTTAAAAATC+TGG - chr3_4:2663186-2663205 Msa0485120:intron 25.0%
!! TAACACTTTAAAAATCTGGT+TGG - chr3_4:2663190-2663209 Msa0485120:intron 25.0%
! ATTATGGGTATTTAATCTTG+TGG - chr3_4:2663390-2663409 Msa0485120:intron 25.0%
!! AGTTAGATGAAGTATCAATT+AGG - chr3_4:2663486-2663505 Msa0485120:CDS 25.0%
! ACTCAAATATTATATGGAAG+GGG + chr3_4:2663782-2663801 None:intergenic 25.0%
! AGTATTTATAGGTAACATGA+CGG - chr3_4:2663911-2663930 Msa0485120:intron 25.0%
! TTAATATTTATACCCACACA+AGG + chr3_4:2664081-2664100 None:intergenic 25.0%
!!! TATGTTAGTTTTTAAGGTTC+TGG - chr3_4:2664233-2664252 Msa0485120:intron 25.0%
!!! ATGTTAGTTTTTAAGGTTCT+GGG - chr3_4:2664234-2664253 Msa0485120:intron 25.0%
! GATGAATCAAGGAAAAAATT+GGG + chr3_4:2664358-2664377 None:intergenic 25.0%
! TGATGAATCAAGGAAAAAAT+TGG + chr3_4:2664359-2664378 None:intergenic 25.0%
AACAGAAGATTGTTGAGAAA+TGG + chr3_4:2658439-2658458 None:intergenic 30.0%
ATTTCTCAACAATCTTCTGT+TGG - chr3_4:2658438-2658457 Msa0485120:three_prime_UTR 30.0%
CCCTTTCTATAATTTCTAAC+TGG - chr3_4:2658520-2658539 Msa0485120:three_prime_UTR 30.0%
CCCAGTTAGAAATTATAGAA+AGG + chr3_4:2658524-2658543 None:intergenic 30.0%
! CTTAACAGTTATAGCGTTTT+TGG - chr3_4:2658688-2658707 Msa0485120:three_prime_UTR 30.0%
TAGAAAATGCCGAAATTGTT+AGG - chr3_4:2658923-2658942 Msa0485120:intron 30.0%
AAACCTTGTAACTGTTATAC+TGG - chr3_4:2659093-2659112 Msa0485120:intron 30.0%
TGTGATATGGAATTGTGAAT+TGG - chr3_4:2659146-2659165 Msa0485120:intron 30.0%
CATATATTGAACTCTCAACA+TGG - chr3_4:2659194-2659213 Msa0485120:intron 30.0%
!! GAAAGAGCATTGATAAATGA+AGG - chr3_4:2659266-2659285 Msa0485120:intron 30.0%
!! AAGAGCATTGATAAATGAAG+GGG - chr3_4:2659268-2659287 Msa0485120:intron 30.0%
TCTGACTCATAATTACACTT+AGG - chr3_4:2659454-2659473 Msa0485120:intron 30.0%
CATAACCAACAATAAGGATA+AGG + chr3_4:2659524-2659543 None:intergenic 30.0%
! ACTGTTTTCATAAACTTTCC+TGG - chr3_4:2659584-2659603 Msa0485120:intron 30.0%
!! TTTATTTCTATAAGCTCTCC+AGG + chr3_4:2659605-2659624 None:intergenic 30.0%
AAGAACTTGTGAGATTCTTA+GGG + chr3_4:2659674-2659693 None:intergenic 30.0%
TAAGAACTTGTGAGATTCTT+AGG + chr3_4:2659675-2659694 None:intergenic 30.0%
TCATCCATTAACGATACTTA+CGG + chr3_4:2659979-2659998 None:intergenic 30.0%
!!! GTTTTTTGTTTTTTGAGCCA+TGG - chr3_4:2660016-2660035 Msa0485120:intron 30.0%
ACAGTTTCATTTGTTTGACA+GGG + chr3_4:2660139-2660158 None:intergenic 30.0%
AACAGTTTCATTTGTTTGAC+AGG + chr3_4:2660140-2660159 None:intergenic 30.0%
! TATTTCTTGGACAATTTTGC+TGG + chr3_4:2660176-2660195 None:intergenic 30.0%
ATTGTCCAAGAAATAGTTCT+TGG - chr3_4:2660181-2660200 Msa0485120:intron 30.0%
TAAATTATCAGCATAGACAG+GGG + chr3_4:2660652-2660671 None:intergenic 30.0%
CTAAATTATCAGCATAGACA+GGG + chr3_4:2660653-2660672 None:intergenic 30.0%
AAGAAATACTGTTACAGACT+AGG + chr3_4:2660722-2660741 None:intergenic 30.0%
ATACAACTCTATTGTGTGAA+AGG + chr3_4:2660751-2660770 None:intergenic 30.0%
GGACATTGTAATTCTTAACA+AGG - chr3_4:2660804-2660823 Msa0485120:intron 30.0%
ACTAAAAAGCTTCATGATAG+TGG - chr3_4:2661112-2661131 Msa0485120:intron 30.0%
ATCTACAGTAACATCATGAA+CGG + chr3_4:2661202-2661221 None:intergenic 30.0%
TTAGAAGCTATACAGGAAAA+AGG + chr3_4:2661252-2661271 None:intergenic 30.0%
TTGGGAGAAGAAATATGATA+TGG - chr3_4:2661590-2661609 Msa0485120:intron 30.0%
!!! TCTTTTTCAAACAGTAACAG+TGG + chr3_4:2661759-2661778 None:intergenic 30.0%
TTGTCAAGATTACTGAAGTA+TGG + chr3_4:2661813-2661832 None:intergenic 30.0%
GTTGTAGAATCTACAATCTA+GGG + chr3_4:2661889-2661908 None:intergenic 30.0%
TGTTGTAGAATCTACAATCT+AGG + chr3_4:2661890-2661909 None:intergenic 30.0%
TTGAAGGAATAGCTTAGTAT+AGG + chr3_4:2662206-2662225 None:intergenic 30.0%
TACTAAGCTATTCCTTCAAT+AGG - chr3_4:2662207-2662226 Msa0485120:intron 30.0%
CATATAGCAATACCTATTGA+AGG + chr3_4:2662222-2662241 None:intergenic 30.0%
AGTATGCTAAAAGAGAAACA+AGG - chr3_4:2662360-2662379 Msa0485120:intron 30.0%
ATTTAGTCAAAAAGATCCCT+TGG - chr3_4:2662399-2662418 Msa0485120:intron 30.0%
AAATTACAAACCCTTATACG+AGG + chr3_4:2662618-2662637 None:intergenic 30.0%
!! AAAACAGAATTTTCAGGCAA+GGG + chr3_4:2662933-2662952 None:intergenic 30.0%
!! AAAAACAGAATTTTCAGGCA+AGG + chr3_4:2662934-2662953 None:intergenic 30.0%
AAATGTAAAATCTTGGGTGT+GGG - chr3_4:2663033-2663052 Msa0485120:intron 30.0%
AGTAGAGTAACAATTGAGTT+TGG - chr3_4:2663142-2663161 Msa0485120:intron 30.0%
! TTACTAGCTCTTGGAATTTA+GGG + chr3_4:2663173-2663192 None:intergenic 30.0%
! TTTAAAGTGTTACTAGCTCT+TGG + chr3_4:2663182-2663201 None:intergenic 30.0%
TTTAAAAATCTGGTTGGACA+TGG - chr3_4:2663196-2663215 Msa0485120:intron 30.0%
ACAAATATATCAGACGAAGA+GGG + chr3_4:2663272-2663291 None:intergenic 30.0%
AACAAATATATCAGACGAAG+AGG + chr3_4:2663273-2663292 None:intergenic 30.0%
TTTGGCAAAACAAAATCTTG+TGG - chr3_4:2663417-2663436 Msa0485120:intron 30.0%
ATCAAACCTAAAACCGAAAT+TGG + chr3_4:2663644-2663663 None:intergenic 30.0%
CTCAAATATTATATGGAAGG+GGG + chr3_4:2663781-2663800 None:intergenic 30.0%
GTATTTATAGGTAACATGAC+GGG - chr3_4:2663912-2663931 Msa0485120:intron 30.0%
AAAGAAGATGTCCTAATCAA+TGG - chr3_4:2664015-2664034 Msa0485120:intron 30.0%
AAAAAATTGGGAAGATGGTA+GGG + chr3_4:2664346-2664365 None:intergenic 30.0%
AACTCAACATTGATGAATCA+AGG + chr3_4:2664369-2664388 None:intergenic 30.0%
TGATTTAAACCAACAAGAGT+GGG + chr3_4:2664491-2664510 None:intergenic 30.0%
TTGATTTAAACCAACAAGAG+TGG + chr3_4:2664492-2664511 None:intergenic 30.0%
TCTAATTGAGCTCGAACTTA+TGG + chr3_4:2658907-2658926 None:intergenic 35.0%
CACTTGAAAACTCACAAGTT+AGG + chr3_4:2658970-2658989 None:intergenic 35.0%
!! CTAACTTGTGAGTTTTCAAG+TGG - chr3_4:2658968-2658987 Msa0485120:CDS 35.0%
CTTCCAGTATAACAGTTACA+AGG + chr3_4:2659099-2659118 None:intergenic 35.0%
GCTGTGATATTGAATGAGTT+TGG - chr3_4:2659227-2659246 Msa0485120:intron 35.0%
! GATATTGAATGAGTTTGGTG+AGG - chr3_4:2659232-2659251 Msa0485120:intron 35.0%
! AATGAGTTTGGTGAGGAAAT+TGG - chr3_4:2659239-2659258 Msa0485120:intron 35.0%
TTGATAAATGAAGGGGAAAG+TGG - chr3_4:2659275-2659294 Msa0485120:intron 35.0%
! TAATGGCTGTATTTGTTGCA+CGG - chr3_4:2659328-2659347 Msa0485120:intron 35.0%
CTCACAAGTTCTTATACTAG+TGG - chr3_4:2659681-2659700 Msa0485120:intron 35.0%
! CTTATACTAGTGGATAAGCT+TGG - chr3_4:2659691-2659710 Msa0485120:intron 35.0%
AACCAAAGAATAGATGCCAA+AGG + chr3_4:2659912-2659931 None:intergenic 35.0%
TTTGGCATCTATTCTTTGGT+TGG - chr3_4:2659911-2659930 Msa0485120:intron 35.0%
! GTATCGTTAATGGATGAAAC+TGG - chr3_4:2659982-2660001 Msa0485120:intron 35.0%
AGAAAATGAAGCAAGATCCA+TGG + chr3_4:2660036-2660055 None:intergenic 35.0%
! TGTCTCCAAGAACTATTTCT+TGG + chr3_4:2660189-2660208 None:intergenic 35.0%
!! ATAGAAGCTGTTTCTTTCCT+CGG - chr3_4:2660294-2660313 Msa0485120:intron 35.0%
! AATTGTGTTTCTACCGAAGT+AGG - chr3_4:2660356-2660375 Msa0485120:intron 35.0%
GCTATCTGAAAATATGCTTC+AGG + chr3_4:2660441-2660460 None:intergenic 35.0%
CCTAAATTATCAGCATAGAC+AGG + chr3_4:2660654-2660673 None:intergenic 35.0%
CCTGTCTATGCTGATAATTT+AGG - chr3_4:2660651-2660670 Msa0485120:intron 35.0%
TTATGGTACTTTACGAGTTG+TGG + chr3_4:2660692-2660711 None:intergenic 35.0%
ATACTGTTACAGACTAGGTA+GGG + chr3_4:2660717-2660736 None:intergenic 35.0%
AATACTGTTACAGACTAGGT+AGG + chr3_4:2660718-2660737 None:intergenic 35.0%
CAGCAACATTATTAGCACTT+TGG + chr3_4:2660775-2660794 None:intergenic 35.0%
! ATAATGTTGCTGCTTCTTTC+AGG - chr3_4:2660783-2660802 Msa0485120:intron 35.0%
CTACGAGTGTGTTAATGTTA+TGG + chr3_4:2660885-2660904 None:intergenic 35.0%
GCTGAAAAGAGAAACAAAAC+AGG + chr3_4:2661045-2661064 None:intergenic 35.0%
AGGAACAGTTGATCTTGATA+AGG - chr3_4:2661162-2661181 Msa0485120:intron 35.0%
TGCGTCATGCATTTAGTATT+AGG - chr3_4:2661308-2661327 Msa0485120:intron 35.0%
CATTTAAGTGAAGCAAAAGC+AGG + chr3_4:2661390-2661409 None:intergenic 35.0%
! CATTTAAGACTCCTTTGCAA+CGG + chr3_4:2661623-2661642 None:intergenic 35.0%
TGATGAATTGCATACTTTGC+AGG - chr3_4:2661653-2661672 Msa0485120:intron 35.0%
AATTGCCAAGTACCAAGTTA+TGG - chr3_4:2661846-2661865 Msa0485120:intron 35.0%
AAGTAGACAGAACCATAACT+TGG + chr3_4:2661861-2661880 None:intergenic 35.0%
TGCCAGATAATACAGTTAGA+CGG - chr3_4:2662121-2662140 Msa0485120:intron 35.0%
AACCGTCTAACTGTATTATC+TGG + chr3_4:2662126-2662145 None:intergenic 35.0%
TCATGCGCTATCAATTAACT+GGG + chr3_4:2662693-2662712 None:intergenic 35.0%
! CAATTTTGAACGTCTTCACA+TGG + chr3_4:2662808-2662827 None:intergenic 35.0%
CAAATGTAAAATCTTGGGTG+TGG - chr3_4:2663032-2663051 Msa0485120:intron 35.0%
! GTTACTAGCTCTTGGAATTT+AGG + chr3_4:2663174-2663193 None:intergenic 35.0%
GGAGAATGCTAATACATAGA+TGG + chr3_4:2663250-2663269 None:intergenic 35.0%
CAAATATATCAGACGAAGAG+GGG + chr3_4:2663271-2663290 None:intergenic 35.0%
AGTGGAAGAAAGAAGAAAAC+AGG - chr3_4:2663877-2663896 Msa0485120:intron 35.0%
GTAGTGTTGTGTTAGTTACT+AGG - chr3_4:2664179-2664198 Msa0485120:intron 35.0%
GAAAAAATTGGGAAGATGGT+AGG + chr3_4:2664347-2664366 None:intergenic 35.0%
CAAGGAAAAAATTGGGAAGA+TGG + chr3_4:2664351-2664370 None:intergenic 35.0%
AAGTTCCATTTCCAAAGTGT+AGG + chr3_4:2664522-2664541 None:intergenic 35.0%
! TGTTCTTGTGCTGCGTTTTT+GGG + chr3_4:2658329-2658348 None:intergenic 40.0%
! TTGTTCTTGTGCTGCGTTTT+TGG + chr3_4:2658330-2658349 None:intergenic 40.0%
ACACATCAACTCCTCCAAAA+TGG - chr3_4:2658350-2658369 Msa0485120:three_prime_UTR 40.0%
! TTCATCGTGTTCCATTTTGG+AGG + chr3_4:2658364-2658383 None:intergenic 40.0%
! GTCTTCATCGTGTTCCATTT+TGG + chr3_4:2658367-2658386 None:intergenic 40.0%
TGTTGAATCTCAACAGCAAG+AGG + chr3_4:2658399-2658418 None:intergenic 40.0%
! ACTCTCATCACTGGTTATCT+TGG - chr3_4:2658465-2658484 Msa0485120:three_prime_UTR 40.0%
!! GGAAAATTAATGGGTTACCG+TGG + chr3_4:2658502-2658521 None:intergenic 40.0%
! ACGTCAAGGACTAAAAGCAT+CGG + chr3_4:2658769-2658788 None:intergenic 40.0%
CTCAATATAATCGCAACACG+CGG + chr3_4:2658811-2658830 None:intergenic 40.0%
GGCATTCAGCCTAACAATTT+CGG + chr3_4:2658935-2658954 None:intergenic 40.0%
ATCACAAAATCATTGGCCGA+GGG + chr3_4:2659132-2659151 None:intergenic 40.0%
TATCACAAAATCATTGGCCG+AGG + chr3_4:2659133-2659152 None:intergenic 40.0%
! CGGCCAATGATTTTGTGATA+TGG - chr3_4:2659133-2659152 Msa0485120:intron 40.0%
TGGTGCAGTTGTTGAAGAAT+GGG - chr3_4:2659295-2659314 Msa0485120:intron 40.0%
!! GAATGGGTTGAACTTGCTAA+TGG - chr3_4:2659311-2659330 Msa0485120:intron 40.0%
TTGCACGGTTAAGCATAGTT+TGG - chr3_4:2659343-2659362 Msa0485120:intron 40.0%
AGCTTGTGCAGAGAAAAGAA+AGG - chr3_4:2659381-2659400 Msa0485120:intron 40.0%
TGTGCCCTTATCCTTATTGT+TGG - chr3_4:2659516-2659535 Msa0485120:intron 40.0%
AGATTCTTAGGGAGAGCTTA+TGG + chr3_4:2659663-2659682 None:intergenic 40.0%
TTGGATAAGCTAATCCAAGC+AGG - chr3_4:2659710-2659729 Msa0485120:intron 40.0%
TAGGCTAGACCATATATTGC+TGG - chr3_4:2659860-2659879 Msa0485120:intron 40.0%
CAGTAGCTTCCAGCAATATA+TGG + chr3_4:2659872-2659891 None:intergenic 40.0%
CATATATTGCTGGAAGCTAC+TGG - chr3_4:2659870-2659889 Msa0485120:intron 40.0%
CACCTTTGGCATCTATTCTT+TGG - chr3_4:2659907-2659926 Msa0485120:intron 40.0%
TCTTTGGTTGGATGAACAGT+TGG - chr3_4:2659923-2659942 Msa0485120:intron 40.0%
! GTCACCGTAAGTATCGTTAA+TGG - chr3_4:2659972-2659991 Msa0485120:intron 40.0%
TTGGCATCTACTACCTACTT+CGG + chr3_4:2660372-2660391 None:intergenic 40.0%
CATAGACAGGGGAAGTTATT+TGG + chr3_4:2660641-2660660 None:intergenic 40.0%
! ACAGACTAGGTAGGGTATTA+TGG + chr3_4:2660709-2660728 None:intergenic 40.0%
!! GTTGATTTGGTATCTGCAGA+AGG - chr3_4:2660826-2660845 Msa0485120:intron 40.0%
GAAACAAAACAGGTAAGCTG+CGG + chr3_4:2661035-2661054 None:intergenic 40.0%
AACAATGATTCCTGCTACCA+CGG - chr3_4:2661350-2661369 Msa0485120:intron 40.0%
! AGAACAAAGCATTCTCTGCT+AGG + chr3_4:2661454-2661473 None:intergenic 40.0%
TATGGCTAGAGGAGATTCTT+TGG - chr3_4:2661571-2661590 Msa0485120:intron 40.0%
ATGGCTAGAGGAGATTCTTT+GGG - chr3_4:2661572-2661591 Msa0485120:intron 40.0%
ATGGATGTATACCGTTGCAA+AGG - chr3_4:2661609-2661628 Msa0485120:intron 40.0%
CAGAACCATAACTTGGTACT+TGG + chr3_4:2661854-2661873 None:intergenic 40.0%
! GATTCTCGGTTAGTTACATG+AGG - chr3_4:2662015-2662034 Msa0485120:CDS 40.0%
GAGGTGAAGAGTCTATCTAT+AGG - chr3_4:2662034-2662053 Msa0485120:CDS 40.0%
ATACAGTTAGACGGTTACAC+AGG - chr3_4:2662130-2662149 Msa0485120:intron 40.0%
TACAGTTAGACGGTTACACA+GGG - chr3_4:2662131-2662150 Msa0485120:intron 40.0%
TGTGATCAGAACGATCACAA+AGG + chr3_4:2662178-2662197 None:intergenic 40.0%
AACATCCTCTTGCAAATGCA+AGG - chr3_4:2662486-2662505 Msa0485120:intron 40.0%
TCTATCAAACTCTCATCACG+AGG + chr3_4:2662558-2662577 None:intergenic 40.0%
GATGAGAGTTTGATAGAGCA+AGG - chr3_4:2662561-2662580 Msa0485120:intron 40.0%
TAGTCACACACCTCGTATAA+GGG - chr3_4:2662605-2662624 Msa0485120:intron 40.0%
CTCATGCGCTATCAATTAAC+TGG + chr3_4:2662694-2662713 None:intergenic 40.0%
CTTAGTTATAGGGTCACTCA+GGG - chr3_4:2663002-2663021 Msa0485120:intron 40.0%
ACTCTACTTATAACCAGCCA+AGG + chr3_4:2663130-2663149 None:intergenic 40.0%
! AGCTCTTGGAATTTAGGGTT+TGG + chr3_4:2663168-2663187 None:intergenic 40.0%
TGAAATAAATGCAGCCCACT+TGG - chr3_4:2663580-2663599 Msa0485120:CDS 40.0%
GAAATAAATGCAGCCCACTT+GGG - chr3_4:2663581-2663600 Msa0485120:CDS 40.0%
! AGTGTGCCAATTTCGGTTTT+AGG - chr3_4:2663635-2663654 Msa0485120:CDS 40.0%
ATTCTACCCAGTGCCAATTT+CGG - chr3_4:2663662-2663681 Msa0485120:CDS 40.0%
ACCATTCATTGCTGAAATCC+TGG - chr3_4:2663814-2663833 Msa0485120:intron 40.0%
! GAGCTTTCAAGCCATTGATT+AGG + chr3_4:2664029-2664048 None:intergenic 40.0%
AAACAAATACGCAGCCTAAC+AGG + chr3_4:2664058-2664077 None:intergenic 40.0%
TGCGTATTTGTTTCCTTGTG+TGG - chr3_4:2664065-2664084 Msa0485120:intron 40.0%
GCGTATTTGTTTCCTTGTGT+GGG - chr3_4:2664066-2664085 Msa0485120:intron 40.0%
TGGTTGAATCTCGCAATCAT+CGG + chr3_4:2664111-2664130 None:intergenic 40.0%
TGAATCTCAACAGCAAGAGG+TGG + chr3_4:2658396-2658415 None:intergenic 45.0%
! ATCACTGGTTATCTTGGTGC+TGG - chr3_4:2658471-2658490 Msa0485120:three_prime_UTR 45.0%
!! GGACTAAAAGCATCGGAGTT+TGG + chr3_4:2658762-2658781 None:intergenic 45.0%
AGTCCTTGACGTCAGCTTAT+TGG - chr3_4:2658777-2658796 Msa0485120:three_prime_UTR 45.0%
GTCCTTGACGTCAGCTTATT+GGG - chr3_4:2658778-2658797 Msa0485120:three_prime_UTR 45.0%
AACTCACAAGTTAGGATCCC+AGG + chr3_4:2658962-2658981 None:intergenic 45.0%
TGAACTCTCAACATGGGAAG+AGG - chr3_4:2659201-2659220 Msa0485120:intron 45.0%
! GTTTGGTGAGGAAATTGGAG+TGG - chr3_4:2659244-2659263 Msa0485120:intron 45.0%
GTGGTGCAGTTGTTGAAGAA+TGG - chr3_4:2659294-2659313 Msa0485120:intron 45.0%
! ATTGCTGGAAGCTACTGGTT+TGG - chr3_4:2659875-2659894 Msa0485120:intron 45.0%
TTTGGCTAATCCAGCACCTT+TGG - chr3_4:2659893-2659912 Msa0485120:intron 45.0%
! AGAATAGATGCCAAAGGTGC+TGG + chr3_4:2659906-2659925 None:intergenic 45.0%
AATCACACACTCATGTACCG+AGG + chr3_4:2660314-2660333 None:intergenic 45.0%
! GAGCTGGAAGCGAACATTTT+TGG + chr3_4:2660391-2660410 None:intergenic 45.0%
AAATGTTCGCTTCCAGCTCA+AGG - chr3_4:2660392-2660411 Msa0485120:intron 45.0%
CAGGAAATGAAGATGAGCCA+CGG + chr3_4:2660422-2660441 None:intergenic 45.0%
TTACTGCAGTATCGTAAGCG+TGG + chr3_4:2660960-2660979 None:intergenic 45.0%
ACCATATGCATCTGTGAGAC+AGG - chr3_4:2661142-2661161 Msa0485120:intron 45.0%
TCCTGTCTCACAGATGCATA+TGG + chr3_4:2661146-2661165 None:intergenic 45.0%
ACAATGATTCCTGCTACCAC+GGG - chr3_4:2661351-2661370 Msa0485120:intron 45.0%
GCATTCTCTGCTAGGCATTA+CGG + chr3_4:2661446-2661465 None:intergenic 45.0%
AACCATGGCAGACTCGTATA+TGG - chr3_4:2661553-2661572 Msa0485120:intron 45.0%
ATAAGATCCGTCTTCACCAG+TGG - chr3_4:2661677-2661696 Msa0485120:intron 45.0%
AATTTGACATGCCTGACCAC+TGG + chr3_4:2661696-2661715 None:intergenic 45.0%
AGATCCCTTGGCATAACTGT+TGG - chr3_4:2662411-2662430 Msa0485120:intron 45.0%
GACTCCAACAGTTATGCCAA+GGG + chr3_4:2662418-2662437 None:intergenic 45.0%
TGACTCCAACAGTTATGCCA+AGG + chr3_4:2662419-2662438 None:intergenic 45.0%
CCTTACCTTGCATTTGCAAG+AGG + chr3_4:2662494-2662513 None:intergenic 45.0%
CCTCTTGCAAATGCAAGGTA+AGG - chr3_4:2662491-2662510 Msa0485120:intron 45.0%
GTGTGCAATATATCCGTGAC+AGG - chr3_4:2662516-2662535 Msa0485120:intron 45.0%
AGGTGTGTGACTAGAATGTG+TGG + chr3_4:2662598-2662617 None:intergenic 45.0%
CTAGTCACACACCTCGTATA+AGG - chr3_4:2662604-2662623 Msa0485120:intron 45.0%
AAATATTGGCATGGTGGCAG+TGG - chr3_4:2662724-2662743 Msa0485120:intron 45.0%
!! GGCAGTGGTGTTACTTTGTT+AGG - chr3_4:2662739-2662758 Msa0485120:intron 45.0%
!! ACAGAATTTTCAGGCAAGGG+AGG + chr3_4:2662930-2662949 None:intergenic 45.0%
CCTGAGTGACCCTATAACTA+AGG + chr3_4:2663004-2663023 None:intergenic 45.0%
CCTTAGTTATAGGGTCACTC+AGG - chr3_4:2663001-2663020 Msa0485120:intron 45.0%
TGTAAAATCTTGGGTGTGGG+AGG - chr3_4:2663036-2663055 Msa0485120:intron 45.0%
CTTATAACCAGCCAAGGCAA+GGG + chr3_4:2663124-2663143 None:intergenic 45.0%
ACTTATAACCAGCCAAGGCA+AGG + chr3_4:2663125-2663144 None:intergenic 45.0%
ACCTTGGAGTGTGCCAATTT+CGG - chr3_4:2663628-2663647 Msa0485120:CDS 45.0%
CCAAAATAGCCCACCGAAAT+TGG + chr3_4:2663678-2663697 None:intergenic 45.0%
!!! CCAATTTCGGTGGGCTATTT+TGG - chr3_4:2663675-2663694 Msa0485120:CDS 45.0%
GCCAGGATTTCAGCAATGAA+TGG + chr3_4:2663818-2663837 None:intergenic 45.0%
TTCATTGCTGAAATCCTGGC+AGG - chr3_4:2663818-2663837 Msa0485120:intron 45.0%
TCTTTCTTCCACTTTCGAGC+AGG + chr3_4:2663870-2663889 None:intergenic 45.0%
GAAAGCTCTTGCAACCTGTT+AGG - chr3_4:2664041-2664060 Msa0485120:intron 45.0%
AAACCAACAAGAGTGGGTGT+TGG + chr3_4:2664485-2664504 None:intergenic 45.0%
!! ATTTAAATAAATTACTTATT+TGG - chr3_4:2660070-2660089 Msa0485120:intron 5.0%
!! GTTGGTGTCACTCTCATCAC+TGG - chr3_4:2658456-2658475 Msa0485120:three_prime_UTR 50.0%
!! TCTTGGTGCTGGCAAATCCA+CGG - chr3_4:2658482-2658501 Msa0485120:three_prime_UTR 50.0%
TGCCCAATAAGCTGACGTCA+AGG + chr3_4:2658783-2658802 None:intergenic 50.0%
TTAGGCTGAATGCCATGACC+TGG - chr3_4:2658941-2658960 Msa0485120:intron 50.0%
TAGGCTGAATGCCATGACCT+GGG - chr3_4:2658942-2658961 Msa0485120:intron 50.0%
CAAGTTAGGATCCCAGGTCA+TGG + chr3_4:2658956-2658975 None:intergenic 50.0%
! TGGAAGTGTGTTCGAACCCT+CGG - chr3_4:2659113-2659132 Msa0485120:intron 50.0%
TCTCTGCACAAGCTGCTCAA+GGG + chr3_4:2659375-2659394 None:intergenic 50.0%
TTCTCTGCACAAGCTGCTCA+AGG + chr3_4:2659376-2659395 None:intergenic 50.0%
CACTATGCAATGGACCTGCT+TGG + chr3_4:2659727-2659746 None:intergenic 50.0%
AGGTCCATTGCATAGTGTCG+CGG - chr3_4:2659730-2659749 Msa0485120:intron 50.0%
TGAACCGCGACACTATGCAA+TGG + chr3_4:2659737-2659756 None:intergenic 50.0%
AGATGCAGTGTTCGGCAAAG+TGG - chr3_4:2659792-2659811 Msa0485120:intron 50.0%
GATGCAGTGTTCGGCAAAGT+GGG - chr3_4:2659793-2659812 Msa0485120:intron 50.0%
TTGGTATCTGCAGAAGGCTC+TGG - chr3_4:2660832-2660851 Msa0485120:intron 50.0%
TAAGCTGCGGTCATGAAGGT+GGG + chr3_4:2661022-2661041 None:intergenic 50.0%
CAATGATTCCTGCTACCACG+GGG - chr3_4:2661352-2661371 Msa0485120:intron 50.0%
AATTTATGCCCCGTGGTAGC+AGG + chr3_4:2661363-2661382 None:intergenic 50.0%
AGGACACAATTTATGCCCCG+TGG + chr3_4:2661370-2661389 None:intergenic 50.0%
AGCCATATACGAGTCTGCCA+TGG + chr3_4:2661558-2661577 None:intergenic 50.0%
GCAGACTCGTATATGGCTAG+AGG - chr3_4:2661560-2661579 Msa0485120:intron 50.0%
GACACATGTCAGTCAGCTAG+AGG + chr3_4:2662073-2662092 None:intergenic 50.0%
GTCAGCAACTCCTAGATGAC+TGG - chr3_4:2662094-2662113 Msa0485120:intron 50.0%
CGACAATGTCAGACCTGTCA+CGG + chr3_4:2662532-2662551 None:intergenic 50.0%
! CATCAAGTGAGAGTGTGAGC+TGG - chr3_4:2662764-2662783 Msa0485120:intron 50.0%
AAGTGAAGACTCCCTTGCCT+TGG - chr3_4:2663110-2663129 Msa0485120:intron 50.0%
TAAATGCAGCCCACTTGGGT+TGG - chr3_4:2663585-2663604 Msa0485120:CDS 50.0%
ACCGAAATTGGCACACTCCA+AGG + chr3_4:2663632-2663651 None:intergenic 50.0%
TACCCAGTGCCAATTTCGGT+GGG - chr3_4:2663666-2663685 Msa0485120:CDS 50.0%
AGATCGTTCCTGCTCGAAAG+TGG - chr3_4:2663859-2663878 Msa0485120:intron 50.0%
GGCATTGTCTTGTGCATGCA+CGG - chr3_4:2663933-2663952 Msa0485120:intron 50.0%
TCTCCAACACCCACTCTTGT+TGG - chr3_4:2664479-2664498 Msa0485120:CDS 50.0%
TCAATGCGCGTCCTACACTT+TGG - chr3_4:2664508-2664527 Msa0485120:exon 50.0%
! CGCGTCCTACACTTTGGAAA+TGG - chr3_4:2664514-2664533 Msa0485120:five_prime_UTR 50.0%
!! AGAAGGCTCTGGAGCTCTAG+AGG - chr3_4:2660843-2660862 Msa0485120:intron 55.0%
!! TGGAGCTCTAGAGGAACTCG+AGG - chr3_4:2660852-2660871 Msa0485120:intron 55.0%
!! AGCTCTAGAGGAACTCGAGG+AGG - chr3_4:2660855-2660874 Msa0485120:intron 55.0%
CTGCAGTATCGTAAGCGTGG+CGG + chr3_4:2660957-2660976 None:intergenic 55.0%
GTAAGCTGCGGTCATGAAGG+TGG + chr3_4:2661023-2661042 None:intergenic 55.0%
CAGGTAAGCTGCGGTCATGA+AGG + chr3_4:2661026-2661045 None:intergenic 55.0%
ATCCGTCTTCACCAGTGGTC+AGG - chr3_4:2661682-2661701 Msa0485120:intron 55.0%
TGCCTGACCACTGGTGAAGA+CGG + chr3_4:2661687-2661706 None:intergenic 55.0%
CTGGCATCTGCCAGTCATCT+AGG + chr3_4:2662107-2662126 None:intergenic 55.0%
CTACCCAGTGCCAATTTCGG+TGG - chr3_4:2663665-2663684 Msa0485120:CDS 55.0%
AGCCCACCGAAATTGGCACT+GGG + chr3_4:2663671-2663690 None:intergenic 55.0%
TAGCCCACCGAAATTGGCAC+TGG + chr3_4:2663672-2663691 None:intergenic 55.0%
TAGTTCTCTCACTGCCTGCC+AGG + chr3_4:2663835-2663854 None:intergenic 55.0%
!! TTCCAGCTCAAGGAGCACCG+TGG - chr3_4:2660402-2660421 Msa0485120:intron 60.0%
GAAGACTCCCTTGCCTTGGC+TGG - chr3_4:2663114-2663133 Msa0485120:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG + chr3_4:2663597-2663616 None:intergenic 60.0%
!! TTGGGTTGGCCTGGTGGTGT+TGG - chr3_4:2663599-2663618 Msa0485120:CDS 60.0%
!! TTGGCCTGGTGGTGTTGGCT+TGG - chr3_4:2663604-2663623 Msa0485120:CDS 60.0%
!! TGGCCTGGTGGTGTTGGCTT+GGG - chr3_4:2663605-2663624 Msa0485120:CDS 60.0%
!! GTGGTGTTGGCTTGGGACCT+TGG - chr3_4:2663612-2663631 Msa0485120:CDS 60.0%
AGCCACGGTGCTCCTTGAGC+TGG + chr3_4:2660407-2660426 None:intergenic 65.0%
CACCACCAGGCCAACCCAAG+TGG + chr3_4:2663598-2663617 None:intergenic 65.0%
GGTCCCAAGCCAACACCACC+AGG + chr3_4:2663611-2663630 None:intergenic 65.0%
!! GCAGCCCACTTGGGTTGGCC+TGG - chr3_4:2663590-2663609 Msa0485120:CDS 70.0%
!! GCCCACTTGGGTTGGCCTGG+TGG - chr3_4:2663593-2663612 Msa0485120:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 2658292 2664587 2658292 ID=Msa0485120;Name=Msa0485120
chr3_4 mRNA 2658292 2664587 2658292 ID=Msa0485120-mRNA-1;Parent=Msa0485120;Name=Msa0485120-mRNA-1;_AED=0.24;_eAED=0.24;_QI=77|1|1|1|1|1|9|525|366
chr3_4 exon 2658292 2658875 2658292 ID=Msa0485120-mRNA-1:exon:922;Parent=Msa0485120-mRNA-1
chr3_4 exon 2658958 2659039 2658958 ID=Msa0485120-mRNA-1:exon:921;Parent=Msa0485120-mRNA-1
chr3_4 exon 2661205 2661315 2661205 ID=Msa0485120-mRNA-1:exon:920;Parent=Msa0485120-mRNA-1
chr3_4 exon 2661696 2661815 2661696 ID=Msa0485120-mRNA-1:exon:919;Parent=Msa0485120-mRNA-1
chr3_4 exon 2661904 2662074 2661904 ID=Msa0485120-mRNA-1:exon:918;Parent=Msa0485120-mRNA-1
chr3_4 exon 2662412 2662501 2662412 ID=Msa0485120-mRNA-1:exon:917;Parent=Msa0485120-mRNA-1
chr3_4 exon 2662902 2663016 2662902 ID=Msa0485120-mRNA-1:exon:916;Parent=Msa0485120-mRNA-1
chr3_4 exon 2663477 2663694 2663477 ID=Msa0485120-mRNA-1:exon:915;Parent=Msa0485120-mRNA-1
chr3_4 exon 2664376 2664587 2664376 ID=Msa0485120-mRNA-1:exon:914;Parent=Msa0485120-mRNA-1
chr3_4 five_prime_UTR 2664511 2664587 2664511 ID=Msa0485120-mRNA-1:five_prime_utr;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2664376 2664510 2664376 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2663477 2663694 2663477 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2662902 2663016 2662902 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2662412 2662501 2662412 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2661904 2662074 2661904 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2661696 2661815 2661696 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2661205 2661315 2661205 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2658958 2659039 2658958 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 CDS 2658817 2658875 2658817 ID=Msa0485120-mRNA-1:cds;Parent=Msa0485120-mRNA-1
chr3_4 three_prime_UTR 2658292 2658816 2658292 ID=Msa0485120-mRNA-1:three_prime_utr;Parent=Msa0485120-mRNA-1
Gene Sequence

>Msa0485120

ATGGAACACGATGAAGACGAAGAACCACCTCTTGCTGTTGAGATTCAACAACATAACAACGATGAATCCATTTCTCAACAATCTTCTGTTGGTGTCACTCTCATCACTGGTTATCTTGGTGCTGGCAAATCCACGTTAGTGAATCATATATTGAACTCTCAACATGGGAAGAGGATTGCTGTGATATTGAATGAGTTTGGTGAGGAAATTGGAGTGGAAAGAGCATTGATAAATGAAGGGGAAAGTGGTGCAGTTGTTGAAGAATGGGTTGAACTTGCTAATGGCTGTATTTGTTGCACGGTTAAGCATAGTTTGGTTCAAGCCCTTGAGCAGCTTGTGCAGAGAAAAGAAAGGCTAGACCATATATTGCTGGAAGCTACTGGTTTGGCTAATCCAGCACCTTTGGCATCTATTCTTTGGTTGGATGAACAGTTGGAATCTGACGTAAAGCTTGATTCTATCGTCACCGTAGTAGATGCCAAAAATGTTCGCTTCCAGCTCAAGGAGCACCGTGGCTCATCTTCATTTCCTGAAGCATATTTTCAGATAGCATTTGCGGACATTGTAATTCTTAACAAGGTTGATTTGGTATCTGCAGAAGGCTCTGGAGCTCTAGAGGAACTCGAGGAGGAAATCCATAACATTAACACACTCGTAGAGATAATTCATTCTGTGCGATGTCAAGTTGACTTATCTAAGATTTTGAACCGCCACGCTTACGATACTGCACATGCTGAACATTTAGAAGCATTGTTAGAAGAAAGTCGTTCTTTGTCTACTAAAAAGCTTCATGATAGTGGCGTGAGAACCATATGCATCTGTGAGACAGGAACAGTTGATCTTGATAAGACTCGTATATGGCTAGAGGAGATTCTTTGGGAGAAGAAATATGATATGGATGTATACCGTTGCAAAGGAGTCTTAAATGTTCAAAACTCTGATGAATTGCATACTTTGCAGGCAGTGAGAGAACTATATGAGATCGTTCCTGCTCGAAAGTGGAAGAAAGAAGAAAACAGGATGAATAAGATAGTATTTATAGGTCATAATCTGAAAGAAGATGTCCTAATCAATGGCTTGAAAGCTCTTGCAACCTGTTAG

Protein sequence

>Msa0485120

MEHDEDEEPPLAVEIQQHNNDESISQQSSVGVTLITGYLGAGKSTLVNHILNSQHGKRIAVILNEFGEEIGVERALINEGESGAVVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLEATGLANPAPLASILWLDEQLESDVKLDSIVTVVDAKNVRFQLKEHRGSSSFPEAYFQIAFADIVILNKVDLVSAEGSGALEELEEEIHNINTLVEIIHSVRCQVDLSKILNRHAYDTAHAEHLEALLEESRSLSTKKLHDSGVRTICICETGTVDLDKTRIWLEEILWEKKYDMDVYRCKGVLNVQNSDELHTLQAVRELYEIVPARKWKKEENRMNKIVFIGHNLKEDVLINGLKALATC*