AlfalfaGEDB | Msa1054790

M. sativa cultivar zhongmu-4 / Msa1054790

KEGG: K04681
GO: GO:0000003 GO:0000082 GO:0000278 GO:0000280 GO:0000902 GO:0000904 GO:0001558 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006275 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007275 GO:0008134 GO:0008150 GO:0008152 GO:0008356 GO:0009553 GO:0009555 GO:0009566 GO:0009567 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009987 GO:0010016 GO:0010026 GO:0010052 GO:0010090 GO:0010103 GO:0010374 GO:0010377 GO:0010468 GO:0010556 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0019953 GO:0022402 GO:0022414 GO:0022619 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032875 GO:0032989 GO:0033043 GO:0034641 GO:0040008 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044770 GO:0044772 GO:0044843 GO:0045132 GO:0045143 GO:0045165 GO:0046483 GO:0048229 GO:0048285 GO:0048366 GO:0048367 GO:0048468 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051052 GO:0051128 GO:0051171 GO:0051239 GO:0051276 GO:0051301 GO:0051321 GO:0051704 GO:0051726 GO:0051783 GO:0055046 GO:0060255 GO:0061982 GO:0065007 GO:0070192 GO:0071514 GO:0071704 GO:0071840 GO:0080090 GO:0090329 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0097159 GO:0098813 GO:0099402 GO:0140013 GO:1901360 GO:1901363 GO:1903046 GO:1903047 GO:1903866 GO:2000036 GO:2000112 GO:2000653
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054790	XP_027910540.1	60.000	120	46	1	1	118	45	164	1.24e-40	154

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054790	sp\|Q9SLZ4\|RBR1_PEA	67.797	118	11	1	1	118	48	138	1.13e-42	152

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054790	A0A2Z6M8L7	66.102	118	13	1	1	118	48	138	2.14e-39	150

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016570	Msa1054790	0.809670	1.686665e-50	-8.615850e-47
Msa0678930	Msa1054790	0.802033	6.797267e-49	-8.615850e-47
Msa0694370	Msa1054790	0.828233	1.007529e-54	-8.615850e-47
Msa0726140	Msa1054790	0.829003	6.565288e-55	-8.615850e-47
Msa0741990	Msa1054790	0.803361	3.616627e-49	-8.615850e-47
Msa0743810	Msa1054790	0.816683	4.873302e-52	-8.615850e-47
Msa0745060	Msa1054790	0.812835	3.471236e-51	-8.615850e-47
Msa0767720	Msa1054790	0.811717	6.089969e-51	-8.615850e-47
Msa0783160	Msa1054790	0.800087	1.698646e-48	-8.615850e-47
Msa0825860	Msa1054790	0.813866	2.060644e-51	-8.615850e-47
Msa0142220	Msa1054790	0.808590	2.873606e-50	-8.615850e-47
Msa0232850	Msa1054790	0.802365	5.808245e-49	-8.615850e-47
Msa0384800	Msa1054790	0.819358	1.211246e-52	-8.615850e-47
Msa0394970	Msa1054790	0.802974	4.349618e-49	-8.615850e-47
Msa0402290	Msa1054790	0.801220	9.977684e-49	-8.615850e-47
Msa0406120	Msa1054790	0.814332	1.625889e-51	-8.615850e-47
Msa0435230	Msa1054790	0.819351	1.215702e-52	-8.615850e-47
Msa0454910	Msa1054790	0.800284	1.548906e-48	-8.615850e-47
Msa1016280	Msa1054790	0.802865	4.579144e-49	-8.615850e-47
Msa1024240	Msa1054790	0.809416	1.912583e-50	-8.615850e-47
Msa1054790	Msa1092990	0.823700	1.202945e-53	-8.615850e-47
Msa1054790	Msa1100980	0.829856	4.073274e-55	-8.615850e-47
Msa1054790	Msa1135740	0.814012	1.912818e-51	-8.615850e-47
Msa1054790	Msa1187940	0.811801	5.837688e-51	-8.615850e-47
Msa1054790	Msa1187950	0.819479	1.136391e-52	-8.615850e-47
Msa1054790	Msa1269670	0.818786	1.634269e-52	-8.615850e-47
Msa1054790	Msa1270240	0.810102	1.362184e-50	-8.615850e-47
Msa1054790	Msa1285930	0.811724	6.068339e-51	-8.615850e-47
Msa1054790	Msa1297210	0.800642	1.309874e-48	-8.615850e-47
Msa1054790	Msa1314280	0.800789	1.222246e-48	-8.615850e-47
Msa1054790	Msa1386330	0.805510	1.289539e-49	-8.615850e-47
Msa1054790	Msa1397860	0.802631	5.119051e-49	-8.615850e-47
Msa1054790	Msa1404000	0.825075	5.711715e-54	-8.615850e-47
Msa1054790	Msa1422180	0.806565	7.732024e-50	-8.615850e-47
Msa1054790	Msa1433120	0.803236	3.837925e-49	-8.615850e-47
Msa1054790	Msa1451190	0.807269	5.488904e-50	-8.615850e-47
Msa0846350	Msa1054790	0.803315	3.695980e-49	-8.615850e-47
Msa0885280	Msa1054790	0.811605	6.439195e-51	-8.615850e-47
Msa0885290	Msa1054790	0.820923	5.305500e-53	-8.615850e-47
Msa0907260	Msa1054790	0.807417	5.106417e-50	-8.615850e-47
Msa0954910	Msa1054790	0.823357	1.446620e-53	-8.615850e-47
Msa0956270	Msa1054790	0.811574	6.541045e-51	-8.615850e-47
Msa0957860	Msa1054790	0.805613	1.226745e-49	-8.615850e-47
Msa0957960	Msa1054790	0.805387	1.368274e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054790	MtrunA17_Chr8g0353751	72.034	118	6	1	1	118	46	136	3.89e-38	135

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054790	AT3G12280.2	42.735	117	40	1	1	117	42	131	1.30e-20	86.3
Msa1054790	AT3G12280.1	42.735	117	40	1	1	117	42	131	1.30e-20	86.3

Find 42 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTAAATCAATTGCTTAAAAT+TGG	0.181934	7_2:+27118376	None:intergenic
GCTTCTGCTGTTTGGCCTTT+TGG	0.186951	7_2:-27118980	Msa1054790:five_prime_UTR
GATGGAAGTTGGGGATATTA+AGG	0.248608	7_2:+27119557	None:intergenic
CGAGAGAGTGAGATGGAAGT+TGG	0.292056	7_2:+27119546	None:intergenic
TTCCCTTCTCCGTCATTTCA+CGG	0.319534	7_2:-27119460	Msa1054790:five_prime_UTR
CATGGCAAATGTTTCATCAA+TGG	0.366338	7_2:-27118767	Msa1054790:CDS
GAGAGAGTGAGATGGAAGTT+GGG	0.366637	7_2:+27119547	None:intergenic
ATTTGCCATGAGAAGATGTT+TGG	0.379727	7_2:+27118780	None:intergenic
AAAGATGAGATTGAGAATAC+TGG	0.403583	7_2:-27118568	Msa1054790:CDS
AATGTTTCATCAATGGGAAA+TGG	0.408483	7_2:-27118760	Msa1054790:CDS
TAGCATTAGAGTTTGTAGTT+TGG	0.409156	7_2:-27118486	Msa1054790:CDS
TGGGGATATTAAGGTTTCAA+TGG	0.416441	7_2:+27119566	None:intergenic
CAGAAGAAGCAGAGCGATGC+TGG	0.419793	7_2:-27118648	Msa1054790:CDS
AAAGAAGCAATGGATCTGTT+TGG	0.423829	7_2:-27118808	Msa1054790:exon
ATGGCAAATGTTTCATCAAT+GGG	0.427540	7_2:-27118766	Msa1054790:CDS
ATAGACTGCATTTGTGTTTG+TGG	0.436210	7_2:-27119085	Msa1054790:five_prime_UTR
TTGTGTTTGTGGACCGTGGC+AGG	0.441265	7_2:-27119074	Msa1054790:five_prime_UTR
GGGGATATTAAGGTTTCAAT+GGG	0.466987	7_2:+27119567	None:intergenic
CTGCTGTTATAGCTCTCGAC+TGG	0.487878	7_2:-27119011	Msa1054790:five_prime_UTR
ACTTCCTCAGTTTGTTGTCA+AGG	0.489779	7_2:-27118404	Msa1054790:CDS
GTTGCTCAGGACGTAATTTG+AGG	0.514531	7_2:-27119110	Msa1054790:intron
CGATGTGGTCAGAGATGAGA+AGG	0.536025	7_2:+27119483	None:intergenic
AGAAAACTGTAAAGAAGCAA+TGG	0.539140	7_2:-27118818	Msa1054790:exon
TGGGAGAGAGATGAACGATA+GGG	0.540134	7_2:+27119586	None:intergenic
AGAGAGTGAGATGGAAGTTG+GGG	0.540686	7_2:+27119548	None:intergenic
CACAAAACTGAAACACCAAA+AGG	0.547775	7_2:+27118965	None:intergenic
ATGGGAGAGAGATGAACGAT+AGG	0.551845	7_2:+27119585	None:intergenic
GCAGCTGAATGAGCTAGCAT+TGG	0.552255	7_2:-27118844	Msa1054790:intron
ACAAATAAACCGTGAAATGA+CGG	0.553304	7_2:+27119451	None:intergenic
AGTAGATCGAGAGAGTGAGA+TGG	0.559499	7_2:+27119539	None:intergenic
AACCGTGAAATGACGGAGAA+GGG	0.559698	7_2:+27119458	None:intergenic
AAACCGTGAAATGACGGAGA+AGG	0.577493	7_2:+27119457	None:intergenic
CTCTCGATCTACTCCACAGA+AGG	0.584696	7_2:-27119529	Msa1054790:five_prime_UTR
CAAATATGTCAAACATGAGA+CGG	0.588251	7_2:+27119423	None:intergenic
TTCATCAATGGGAAATGGAA+CGG	0.599659	7_2:-27118755	Msa1054790:intron
AGAAACCAAACATCTTCTCA+TGG	0.615290	7_2:-27118785	Msa1054790:CDS
TGTTCTCAGTATTCGACACA+AGG	0.615567	7_2:+27118540	None:intergenic
AGATGAGAAGGAGATAGCGA+TGG	0.617672	7_2:+27119495	None:intergenic
GGAGACAAGAGAGCCTTCTG+TGG	0.636985	7_2:+27119516	None:intergenic
GCATTTGTGTTTGTGGACCG+TGG	0.648507	7_2:-27119078	Msa1054790:five_prime_UTR
TGACGGAGAAGGGAACGATG+TGG	0.700100	7_2:+27119468	None:intergenic
TCAGCCTTGACAACAAACTG+AGG	0.709180	7_2:+27118400	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AATTTTTGTTTTTAATGAAA+TGG	-	chr7_2:27118694-27118713	Msa1054790:intron	10.0%
!!!	ATTTTTGTTTTTAATGAAAT+GGG	-	chr7_2:27118695-27118714	Msa1054790:intron	10.0%
!!	TAAAAATTAATATCATGAAA+GGG	+	chr7_2:27118852-27118871	None:intergenic	10.0%
!!!	ATATTAATTTTTACTTTGAT+GGG	-	chr7_2:27118859-27118878	Msa1054790:intron	10.0%
!!!	AATTTTTGTTTTTAATGAAA+TGG	-	chr7_2:27118694-27118713	Msa1054790:intron	10.0%
!!!	ATTTTTGTTTTTAATGAAAT+GGG	-	chr7_2:27118695-27118714	Msa1054790:intron	10.0%
!!	TAAAAATTAATATCATGAAA+GGG	+	chr7_2:27118852-27118871	None:intergenic	10.0%
!!!	ATATTAATTTTTACTTTGAT+GGG	-	chr7_2:27118859-27118878	Msa1054790:intron	10.0%
!!	GTAAAAATTAATATCATGAA+AGG	+	chr7_2:27118853-27118872	None:intergenic	15.0%
!!!	GATATTAATTTTTACTTTGA+TGG	-	chr7_2:27118858-27118877	Msa1054790:intron	15.0%
!!	AAAATATTATATTATCTCGT+AGG	+	chr7_2:27119083-27119102	None:intergenic	15.0%
!!!	TAATATAATATTTTTGTGAC+AGG	-	chr7_2:27119089-27119108	Msa1054790:five_prime_UTR	15.0%
!!	GTAAAAATTAATATCATGAA+AGG	+	chr7_2:27118853-27118872	None:intergenic	15.0%
!!!	GATATTAATTTTTACTTTGA+TGG	-	chr7_2:27118858-27118877	Msa1054790:intron	15.0%
!!	AAAATATTATATTATCTCGT+AGG	+	chr7_2:27119083-27119102	None:intergenic	15.0%
!!!	TAATATAATATTTTTGTGAC+AGG	-	chr7_2:27119089-27119108	Msa1054790:five_prime_UTR	15.0%
!!!	ATTTGTTGAAAATTAGAGTT+TGG	-	chr7_2:27118749-27118768	Msa1054790:intron	20.0%
!!!	TTATTTTATACTCTATCAAG+AGG	-	chr7_2:27119373-27119392	Msa1054790:intron	20.0%
!!!	ATTTGTTGAAAATTAGAGTT+TGG	-	chr7_2:27118749-27118768	Msa1054790:intron	20.0%
!!!	TTATTTTATACTCTATCAAG+AGG	-	chr7_2:27119373-27119392	Msa1054790:intron	20.0%
!	AATTGAACATCTCCTATATT+GGG	+	chr7_2:27118643-27118662	None:intergenic	25.0%
!	AAATTGAACATCTCCTATAT+TGG	+	chr7_2:27118644-27118663	None:intergenic	25.0%
!!!	AAATGGGTTTGTTGAAATTT+TGG	-	chr7_2:27118711-27118730	Msa1054790:intron	25.0%
!	AAAATTAGAGTTTGGTTAGT+GGG	-	chr7_2:27118757-27118776	Msa1054790:CDS	25.0%
!!!	AGTTTTTATTTGAAGTCATG+AGG	-	chr7_2:27119302-27119321	Msa1054790:intron	25.0%
!	AATTGAACATCTCCTATATT+GGG	+	chr7_2:27118643-27118662	None:intergenic	25.0%
!	AAATTGAACATCTCCTATAT+TGG	+	chr7_2:27118644-27118663	None:intergenic	25.0%
!!!	AAATGGGTTTGTTGAAATTT+TGG	-	chr7_2:27118711-27118730	Msa1054790:intron	25.0%
!	AAAATTAGAGTTTGGTTAGT+GGG	-	chr7_2:27118757-27118776	Msa1054790:CDS	25.0%
!!!	AGTTTTTATTTGAAGTCATG+AGG	-	chr7_2:27119302-27119321	Msa1054790:intron	25.0%
	ACAAATAAACCGTGAAATGA+CGG	+	chr7_2:27118543-27118562	None:intergenic	30.0%
	CAAATATGTCAAACATGAGA+CGG	+	chr7_2:27118571-27118590	None:intergenic	30.0%
!!!	TATTTGTTTTGTGCAATCTC+AGG	-	chr7_2:27118585-27118604	Msa1054790:CDS	30.0%
	ATTGAACATCTCCTATATTG+GGG	+	chr7_2:27118642-27118661	None:intergenic	30.0%
	GAAAATTAGAGTTTGGTTAG+TGG	-	chr7_2:27118756-27118775	Msa1054790:CDS	30.0%
!!	TGTTTCAGTTTTGTGTTGTT+AGG	-	chr7_2:27119034-27119053	Msa1054790:five_prime_UTR	30.0%
!!	TTTGTGTTGTTAGGTTGTTT+TGG	-	chr7_2:27119043-27119062	Msa1054790:five_prime_UTR	30.0%
	AGAAAACTGTAAAGAAGCAA+TGG	-	chr7_2:27119173-27119192	Msa1054790:intron	30.0%
	ATGGCAAATGTTTCATCAAT+GGG	-	chr7_2:27119225-27119244	Msa1054790:intron	30.0%
	AATGTTTCATCAATGGGAAA+TGG	-	chr7_2:27119231-27119250	Msa1054790:intron	30.0%
	AAAGATGAGATTGAGAATAC+TGG	-	chr7_2:27119423-27119442	Msa1054790:five_prime_UTR	30.0%
	TAGCATTAGAGTTTGTAGTT+TGG	-	chr7_2:27119505-27119524	Msa1054790:five_prime_UTR	30.0%
	ACAAATAAACCGTGAAATGA+CGG	+	chr7_2:27118543-27118562	None:intergenic	30.0%
	CAAATATGTCAAACATGAGA+CGG	+	chr7_2:27118571-27118590	None:intergenic	30.0%
!!!	TATTTGTTTTGTGCAATCTC+AGG	-	chr7_2:27118585-27118604	Msa1054790:CDS	30.0%
	ATTGAACATCTCCTATATTG+GGG	+	chr7_2:27118642-27118661	None:intergenic	30.0%
	GAAAATTAGAGTTTGGTTAG+TGG	-	chr7_2:27118756-27118775	Msa1054790:CDS	30.0%
!!	TGTTTCAGTTTTGTGTTGTT+AGG	-	chr7_2:27119034-27119053	Msa1054790:five_prime_UTR	30.0%
!!	TTTGTGTTGTTAGGTTGTTT+TGG	-	chr7_2:27119043-27119062	Msa1054790:five_prime_UTR	30.0%
	AGAAAACTGTAAAGAAGCAA+TGG	-	chr7_2:27119173-27119192	Msa1054790:intron	30.0%
	ATGGCAAATGTTTCATCAAT+GGG	-	chr7_2:27119225-27119244	Msa1054790:intron	30.0%
	AATGTTTCATCAATGGGAAA+TGG	-	chr7_2:27119231-27119250	Msa1054790:intron	30.0%
	AAAGATGAGATTGAGAATAC+TGG	-	chr7_2:27119423-27119442	Msa1054790:five_prime_UTR	30.0%
	TAGCATTAGAGTTTGTAGTT+TGG	-	chr7_2:27119505-27119524	Msa1054790:five_prime_UTR	30.0%
	GGGGATATTAAGGTTTCAAT+GGG	+	chr7_2:27118427-27118446	None:intergenic	35.0%
	TGGGGATATTAAGGTTTCAA+TGG	+	chr7_2:27118428-27118447	None:intergenic	35.0%
	ATAGACTGCATTTGTGTTTG+TGG	-	chr7_2:27118906-27118925	Msa1054790:intron	35.0%
	CACAAAACTGAAACACCAAA+AGG	+	chr7_2:27119029-27119048	None:intergenic	35.0%
	AAAGAAGCAATGGATCTGTT+TGG	-	chr7_2:27119183-27119202	Msa1054790:intron	35.0%
	AGAAACCAAACATCTTCTCA+TGG	-	chr7_2:27119206-27119225	Msa1054790:intron	35.0%
	ATTTGCCATGAGAAGATGTT+TGG	+	chr7_2:27119214-27119233	None:intergenic	35.0%
	CATGGCAAATGTTTCATCAA+TGG	-	chr7_2:27119224-27119243	Msa1054790:intron	35.0%
	TTCATCAATGGGAAATGGAA+CGG	-	chr7_2:27119236-27119255	Msa1054790:intron	35.0%
	GGGGATATTAAGGTTTCAAT+GGG	+	chr7_2:27118427-27118446	None:intergenic	35.0%
	TGGGGATATTAAGGTTTCAA+TGG	+	chr7_2:27118428-27118447	None:intergenic	35.0%
	ATAGACTGCATTTGTGTTTG+TGG	-	chr7_2:27118906-27118925	Msa1054790:intron	35.0%
	CACAAAACTGAAACACCAAA+AGG	+	chr7_2:27119029-27119048	None:intergenic	35.0%
	AAAGAAGCAATGGATCTGTT+TGG	-	chr7_2:27119183-27119202	Msa1054790:intron	35.0%
	AGAAACCAAACATCTTCTCA+TGG	-	chr7_2:27119206-27119225	Msa1054790:intron	35.0%
	ATTTGCCATGAGAAGATGTT+TGG	+	chr7_2:27119214-27119233	None:intergenic	35.0%
	CATGGCAAATGTTTCATCAA+TGG	-	chr7_2:27119224-27119243	Msa1054790:intron	35.0%
	TTCATCAATGGGAAATGGAA+CGG	-	chr7_2:27119236-27119255	Msa1054790:intron	35.0%
	GATGGAAGTTGGGGATATTA+AGG	+	chr7_2:27118437-27118456	None:intergenic	40.0%
	GGAACAAAGCTGACAAATAG+AGG	+	chr7_2:27118621-27118640	None:intergenic	40.0%
!!	TCAGCTTTGTTCCCCAATAT+AGG	-	chr7_2:27118628-27118647	Msa1054790:CDS	40.0%
!!	TTTACTTTGATGGGTTGCTC+AGG	-	chr7_2:27118868-27118887	Msa1054790:intron	40.0%
	AAAACACCAAAAACCTGCCA+CGG	+	chr7_2:27118933-27118952	None:intergenic	40.0%
!!!	GCAGGTTTTTGGTGTTTTAG+TGG	-	chr7_2:27118935-27118954	Msa1054790:intron	40.0%
!	CTTTTGATGCTTCTGCTGTT+TGG	-	chr7_2:27119003-27119022	Msa1054790:five_prime_UTR	40.0%
	TGTTCTCAGTATTCGACACA+AGG	+	chr7_2:27119454-27119473	None:intergenic	40.0%
!!	ACTTCCTCAGTTTGTTGTCA+AGG	-	chr7_2:27119587-27119606	Msa1054790:five_prime_UTR	40.0%
	GATGGAAGTTGGGGATATTA+AGG	+	chr7_2:27118437-27118456	None:intergenic	40.0%
	GGAACAAAGCTGACAAATAG+AGG	+	chr7_2:27118621-27118640	None:intergenic	40.0%
!!	TCAGCTTTGTTCCCCAATAT+AGG	-	chr7_2:27118628-27118647	Msa1054790:CDS	40.0%
!!	TTTACTTTGATGGGTTGCTC+AGG	-	chr7_2:27118868-27118887	Msa1054790:intron	40.0%
	AAAACACCAAAAACCTGCCA+CGG	+	chr7_2:27118933-27118952	None:intergenic	40.0%
!!!	GCAGGTTTTTGGTGTTTTAG+TGG	-	chr7_2:27118935-27118954	Msa1054790:intron	40.0%
!	CTTTTGATGCTTCTGCTGTT+TGG	-	chr7_2:27119003-27119022	Msa1054790:five_prime_UTR	40.0%
	TGTTCTCAGTATTCGACACA+AGG	+	chr7_2:27119454-27119473	None:intergenic	40.0%
!!	ACTTCCTCAGTTTGTTGTCA+AGG	-	chr7_2:27119587-27119606	Msa1054790:five_prime_UTR	40.0%
	TGGGAGAGAGATGAACGATA+GGG	+	chr7_2:27118408-27118427	None:intergenic	45.0%
	ATGGGAGAGAGATGAACGAT+AGG	+	chr7_2:27118409-27118428	None:intergenic	45.0%
	AGAGAGTGAGATGGAAGTTG+GGG	+	chr7_2:27118446-27118465	None:intergenic	45.0%
	GAGAGAGTGAGATGGAAGTT+GGG	+	chr7_2:27118447-27118466	None:intergenic	45.0%
	AGTAGATCGAGAGAGTGAGA+TGG	+	chr7_2:27118455-27118474	None:intergenic	45.0%
	AGATGAGAAGGAGATAGCGA+TGG	+	chr7_2:27118499-27118518	None:intergenic	45.0%
	TTCCCTTCTCCGTCATTTCA+CGG	-	chr7_2:27118531-27118550	Msa1054790:CDS	45.0%
!	AACCGTGAAATGACGGAGAA+GGG	+	chr7_2:27118536-27118555	None:intergenic	45.0%
!	AAACCGTGAAATGACGGAGA+AGG	+	chr7_2:27118537-27118556	None:intergenic	45.0%
	GTTGCTCAGGACGTAATTTG+AGG	-	chr7_2:27118881-27118900	Msa1054790:intron	45.0%
!	GAGGCTGACTCAGAAAAATG+AGG	-	chr7_2:27119392-27119411	Msa1054790:intron	45.0%
	TCAGCCTTGACAACAAACTG+AGG	+	chr7_2:27119594-27119613	None:intergenic	45.0%
	TGGGAGAGAGATGAACGATA+GGG	+	chr7_2:27118408-27118427	None:intergenic	45.0%
	ATGGGAGAGAGATGAACGAT+AGG	+	chr7_2:27118409-27118428	None:intergenic	45.0%
	AGAGAGTGAGATGGAAGTTG+GGG	+	chr7_2:27118446-27118465	None:intergenic	45.0%
	GAGAGAGTGAGATGGAAGTT+GGG	+	chr7_2:27118447-27118466	None:intergenic	45.0%
	AGTAGATCGAGAGAGTGAGA+TGG	+	chr7_2:27118455-27118474	None:intergenic	45.0%
	AGATGAGAAGGAGATAGCGA+TGG	+	chr7_2:27118499-27118518	None:intergenic	45.0%
	TTCCCTTCTCCGTCATTTCA+CGG	-	chr7_2:27118531-27118550	Msa1054790:CDS	45.0%
!	AACCGTGAAATGACGGAGAA+GGG	+	chr7_2:27118536-27118555	None:intergenic	45.0%
!	AAACCGTGAAATGACGGAGA+AGG	+	chr7_2:27118537-27118556	None:intergenic	45.0%
	GTTGCTCAGGACGTAATTTG+AGG	-	chr7_2:27118881-27118900	Msa1054790:intron	45.0%
!	GAGGCTGACTCAGAAAAATG+AGG	-	chr7_2:27119392-27119411	Msa1054790:intron	45.0%
	TCAGCCTTGACAACAAACTG+AGG	+	chr7_2:27119594-27119613	None:intergenic	45.0%
	CGAGAGAGTGAGATGGAAGT+TGG	+	chr7_2:27118448-27118467	None:intergenic	50.0%
	CTCTCGATCTACTCCACAGA+AGG	-	chr7_2:27118462-27118481	Msa1054790:CDS	50.0%
	CGATGTGGTCAGAGATGAGA+AGG	+	chr7_2:27118511-27118530	None:intergenic	50.0%
	GCATTTGTGTTTGTGGACCG+TGG	-	chr7_2:27118913-27118932	Msa1054790:intron	50.0%
	CTGCTGTTATAGCTCTCGAC+TGG	-	chr7_2:27118980-27118999	Msa1054790:five_prime_UTR	50.0%
!!	GCTTCTGCTGTTTGGCCTTT+TGG	-	chr7_2:27119011-27119030	Msa1054790:five_prime_UTR	50.0%
	GCAGCTGAATGAGCTAGCAT+TGG	-	chr7_2:27119147-27119166	Msa1054790:intron	50.0%
	CGAGAGAGTGAGATGGAAGT+TGG	+	chr7_2:27118448-27118467	None:intergenic	50.0%
	CTCTCGATCTACTCCACAGA+AGG	-	chr7_2:27118462-27118481	Msa1054790:CDS	50.0%
	CGATGTGGTCAGAGATGAGA+AGG	+	chr7_2:27118511-27118530	None:intergenic	50.0%
	GCATTTGTGTTTGTGGACCG+TGG	-	chr7_2:27118913-27118932	Msa1054790:intron	50.0%
	CTGCTGTTATAGCTCTCGAC+TGG	-	chr7_2:27118980-27118999	Msa1054790:five_prime_UTR	50.0%
!!	GCTTCTGCTGTTTGGCCTTT+TGG	-	chr7_2:27119011-27119030	Msa1054790:five_prime_UTR	50.0%
	GCAGCTGAATGAGCTAGCAT+TGG	-	chr7_2:27119147-27119166	Msa1054790:intron	50.0%
	GGAGACAAGAGAGCCTTCTG+TGG	+	chr7_2:27118478-27118497	None:intergenic	55.0%
	TGACGGAGAAGGGAACGATG+TGG	+	chr7_2:27118526-27118545	None:intergenic	55.0%
	TTGTGTTTGTGGACCGTGGC+AGG	-	chr7_2:27118917-27118936	Msa1054790:intron	55.0%
!	TGTGGACCGTGGCAGGTTTT+TGG	-	chr7_2:27118924-27118943	Msa1054790:intron	55.0%
	CAGAAGAAGCAGAGCGATGC+TGG	-	chr7_2:27119343-27119362	Msa1054790:intron	55.0%
	GGAGACAAGAGAGCCTTCTG+TGG	+	chr7_2:27118478-27118497	None:intergenic	55.0%
	TGACGGAGAAGGGAACGATG+TGG	+	chr7_2:27118526-27118545	None:intergenic	55.0%
	TTGTGTTTGTGGACCGTGGC+AGG	-	chr7_2:27118917-27118936	Msa1054790:intron	55.0%
!	TGTGGACCGTGGCAGGTTTT+TGG	-	chr7_2:27118924-27118943	Msa1054790:intron	55.0%
	CAGAAGAAGCAGAGCGATGC+TGG	-	chr7_2:27119343-27119362	Msa1054790:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	27118381	27119632	27118381	ID=Msa1054790;Name=Msa1054790
chr7_2	mRNA	27118381	27119632	27118381	ID=Msa1054790-mRNA-1;Parent=Msa1054790;Name=Msa1054790-mRNA-1;_AED=0.39;_eAED=0.44;_QI=430\|1\|0.75\|1\|0.33\|0.25\|4\|0\|118
chr7_2	exon	27118381	27118671	27118381	ID=Msa1054790-mRNA-1:exon:5787;Parent=Msa1054790-mRNA-1
chr7_2	exon	27118756	27118859	27118756	ID=Msa1054790-mRNA-1:exon:5786;Parent=Msa1054790-mRNA-1
chr7_2	exon	27118958	27119123	27118958	ID=Msa1054790-mRNA-1:exon:5785;Parent=Msa1054790-mRNA-1
chr7_2	exon	27119407	27119632	27119407	ID=Msa1054790-mRNA-1:exon:5784;Parent=Msa1054790-mRNA-1
chr7_2	five_prime_UTR	27119407	27119632	27119407	ID=Msa1054790-mRNA-1:five_prime_utr;Parent=Msa1054790-mRNA-1
chr7_2	five_prime_UTR	27118958	27119123	27118958	ID=Msa1054790-mRNA-1:five_prime_utr;Parent=Msa1054790-mRNA-1
chr7_2	five_prime_UTR	27118822	27118859	27118822	ID=Msa1054790-mRNA-1:five_prime_utr;Parent=Msa1054790-mRNA-1
chr7_2	CDS	27118756	27118821	27118756	ID=Msa1054790-mRNA-1:cds;Parent=Msa1054790-mRNA-1
chr7_2	CDS	27118381	27118671	27118381	ID=Msa1054790-mRNA-1:cds;Parent=Msa1054790-mRNA-1

Gene Sequence	>Msa1054790 ATGGATCTGTTTGGAGAAACCAAACATCTTCTCATGGCAAATGTTTCATCAATGGGAAATGGAACGACAGAAGAAGCAGAGCGATGCTGGTTTGCTTTTATTTTATACTCTATCAAGAGGCTGACTCAGAAAAATGAGGAGAGTGAAAAAGATGAGATTGAGAATACTGGTCTTACCTTGTGTCGAATACTGAGAACAACAAAGCTTAAGTATTTTTCTGACATTTATCTAGCATTAGAGTTTGTAGTTTGGTCTTTTATTAACTGTTATGTTTATCTTGTATTGAACAACATTGCAGATTTTTTCAAAGAACTTCCTCAGTTTGTTGTCAAGGCTGATCCAATTTTAAGCAATTGA
Protein sequence	>Msa1054790 MDLFGETKHLLMANVSSMGNGTTEEAERCWFAFILYSIKRLTQKNEESEKDEIENTGLTLCRILRTTKLKYFSDIYLALEFVVWSFINCYVYLVLNNIADFFKELPQFVVKADPILSN*