Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386330 | KEH43958.1 | 52.222 | 270 | 122 | 1 | 3 | 265 | 4 | 273 | 5.94e-99 | 300 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386330 | G8A101 | 52.222 | 270 | 122 | 1 | 3 | 265 | 4 | 273 | 2.84e-99 | 300 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014330 | Msa1386330 | 0.800995 | 1.109444e-48 | -8.615850e-47 |
| Msa0102070 | Msa1386330 | 0.803577 | 3.261933e-49 | -8.615850e-47 |
| Msa0111510 | Msa1386330 | 0.806316 | 8.727687e-50 | -8.615850e-47 |
| Msa1344520 | Msa1386330 | 0.800137 | 1.659197e-48 | -8.615850e-47 |
| Msa1369430 | Msa1386330 | 0.816816 | 4.551145e-52 | -8.615850e-47 |
| Msa1386330 | Msa1397580 | 0.811381 | 7.202633e-51 | -8.615850e-47 |
| Msa1386330 | Msa1402790 | 0.815874 | 7.393626e-52 | -8.615850e-47 |
| Msa1386330 | Msa1404000 | 0.862741 | 4.088985e-64 | -8.615850e-47 |
| Msa1386330 | Msa1415310 | 0.838972 | 2.092544e-57 | -8.615850e-47 |
| Msa1386330 | Msa1422180 | 0.864213 | 1.429264e-64 | -8.615850e-47 |
| Msa1386330 | Msa1433120 | 0.812135 | 4.936133e-51 | -8.615850e-47 |
| Msa0604350 | Msa1386330 | 0.810297 | 1.236204e-50 | -8.615850e-47 |
| Msa0636170 | Msa1386330 | 0.827358 | 1.635012e-54 | -8.615850e-47 |
| Msa0639610 | Msa1386330 | 0.820387 | 7.044730e-53 | -8.615850e-47 |
| Msa0661870 | Msa1386330 | 0.803374 | 3.593708e-49 | -8.615850e-47 |
| Msa0694370 | Msa1386330 | 0.840970 | 6.308640e-58 | -8.615850e-47 |
| Msa0726140 | Msa1386330 | 0.849699 | 2.733834e-60 | -8.615850e-47 |
| Msa0732540 | Msa1386330 | 0.827499 | 1.512238e-54 | -8.615850e-47 |
| Msa0732710 | Msa1386330 | 0.808548 | 2.934482e-50 | -8.615850e-47 |
| Msa0733290 | Msa1386330 | 0.812890 | 3.376092e-51 | -8.615850e-47 |
| Msa0735080 | Msa1386330 | 0.809144 | 2.188007e-50 | -8.615850e-47 |
| Msa0743810 | Msa1386330 | 0.858875 | 6.100354e-63 | -8.615850e-47 |
| Msa0745060 | Msa1386330 | 0.861047 | 1.349408e-63 | -8.615850e-47 |
| Msa0777870 | Msa1386330 | 0.823005 | 1.747974e-53 | -8.615850e-47 |
| Msa0783160 | Msa1386330 | 0.829370 | 5.348496e-55 | -8.615850e-47 |
| Msa0784290 | Msa1386330 | 0.845271 | 4.505952e-59 | -8.615850e-47 |
| Msa0811270 | Msa1386330 | 0.810865 | 9.317181e-51 | -8.615850e-47 |
| Msa0824600 | Msa1386330 | 0.827154 | 1.829528e-54 | -8.615850e-47 |
| Msa0825860 | Msa1386330 | 0.868306 | 7.202574e-66 | -8.615850e-47 |
| Msa0833300 | Msa1386330 | 0.820017 | 8.563969e-53 | -8.615850e-47 |
| Msa0123810 | Msa1386330 | 0.851772 | 7.138395e-61 | -8.615850e-47 |
| Msa0145750 | Msa1386330 | 0.802797 | 4.730708e-49 | -8.615850e-47 |
| Msa0208090 | Msa1386330 | 0.808754 | 2.650936e-50 | -8.615850e-47 |
| Msa0232850 | Msa1386330 | 0.863021 | 3.351735e-64 | -8.615850e-47 |
| Msa1246880 | Msa1386330 | 0.825657 | 4.160234e-54 | -8.615850e-47 |
| Msa1269670 | Msa1386330 | 0.855268 | 7.068167e-62 | -8.615850e-47 |
| Msa1270230 | Msa1386330 | 0.827112 | 1.872606e-54 | -8.615850e-47 |
| Msa1270240 | Msa1386330 | 0.842583 | 2.367325e-58 | -8.615850e-47 |
| Msa1270270 | Msa1386330 | 0.839049 | 1.999077e-57 | -8.615850e-47 |
| Msa1273230 | Msa1386330 | 0.810083 | 1.374961e-50 | -8.615850e-47 |
| Msa1283330 | Msa1386330 | 0.850612 | 1.517089e-60 | -8.615850e-47 |
| Msa1284680 | Msa1386330 | 0.811588 | 6.494611e-51 | -8.615850e-47 |
| Msa1285930 | Msa1386330 | 0.842748 | 2.139399e-58 | -8.615850e-47 |
| Msa1287800 | Msa1386330 | 0.820537 | 6.508769e-53 | -8.615850e-47 |
| Msa1287810 | Msa1386330 | 0.837293 | 5.662907e-57 | -8.615850e-47 |
| Msa1297210 | Msa1386330 | 0.820863 | 5.478054e-53 | -8.615850e-47 |
| Msa1314280 | Msa1386330 | 0.807090 | 5.990261e-50 | -8.615850e-47 |
| Msa1320300 | Msa1386330 | 0.812538 | 4.031922e-51 | -8.615850e-47 |
| Msa1340590 | Msa1386330 | 0.811669 | 6.237543e-51 | -8.615850e-47 |
| Msa1342200 | Msa1386330 | 0.808732 | 2.679819e-50 | -8.615850e-47 |
| Msa0365500 | Msa1386330 | 0.822422 | 2.389441e-53 | -8.615850e-47 |
| Msa0384800 | Msa1386330 | 0.843884 | 1.064402e-58 | -8.615850e-47 |
| Msa0406120 | Msa1386330 | 0.820403 | 6.985342e-53 | -8.615850e-47 |
| Msa0414410 | Msa1386330 | 0.802312 | 5.954936e-49 | -8.615850e-47 |
| Msa0414420 | Msa1386330 | 0.829466 | 5.068415e-55 | -8.615850e-47 |
| Msa0423020 | Msa1386330 | 0.841025 | 6.102888e-58 | -8.615850e-47 |
| Msa0435230 | Msa1386330 | 0.843994 | 9.948312e-59 | -8.615850e-47 |
| Msa0436780 | Msa1386330 | 0.813233 | 2.839587e-51 | -8.615850e-47 |
| Msa0444130 | Msa1386330 | 0.809732 | 1.635795e-50 | -8.615850e-47 |
| Msa0450000 | Msa1386330 | 0.822862 | 1.887261e-53 | -8.615850e-47 |
| Msa0451730 | Msa1386330 | 0.835229 | 1.895277e-56 | -8.615850e-47 |
| Msa0452900 | Msa1386330 | 0.849061 | 4.116299e-60 | -8.615850e-47 |
| Msa0453120 | Msa1386330 | 0.837938 | 3.867195e-57 | -8.615850e-47 |
| Msa0454910 | Msa1386330 | 0.831447 | 1.661010e-55 | -8.615850e-47 |
| Msa0479340 | Msa1386330 | 0.835352 | 1.763846e-56 | -8.615850e-47 |
| Msa0986360 | Msa1386330 | 0.806809 | 6.869059e-50 | -8.615850e-47 |
| Msa0989060 | Msa1386330 | 0.854151 | 1.489406e-61 | -8.615850e-47 |
| Msa1002310 | Msa1386330 | 0.820843 | 5.535678e-53 | -8.615850e-47 |
| Msa1016280 | Msa1386330 | 0.838793 | 2.328283e-57 | -8.615850e-47 |
| Msa1024240 | Msa1386330 | 0.801839 | 7.451586e-49 | -8.615850e-47 |
| Msa1025360 | Msa1386330 | 0.835726 | 1.418663e-56 | -8.615850e-47 |
| Msa1025370 | Msa1386330 | 0.832966 | 6.989542e-56 | -8.615850e-47 |
| Msa1044830 | Msa1386330 | 0.833663 | 4.685338e-56 | -8.615850e-47 |
| Msa1044840 | Msa1386330 | 0.839095 | 1.945122e-57 | -8.615850e-47 |
| Msa1054790 | Msa1386330 | 0.805510 | 1.289539e-49 | -8.615850e-47 |
| Msa1057920 | Msa1386330 | 0.803492 | 3.396936e-49 | -8.615850e-47 |
| Msa1092990 | Msa1386330 | 0.871231 | 8.003109e-67 | -8.615850e-47 |
| Msa1100980 | Msa1386330 | 0.872824 | 2.362241e-67 | -8.615850e-47 |
| Msa0251320 | Msa1386330 | 0.824993 | 5.970888e-54 | -8.615850e-47 |
| Msa0267000 | Msa1386330 | 0.827573 | 1.452375e-54 | -8.615850e-47 |
| Msa0267010 | Msa1386330 | 0.833161 | 6.251691e-56 | -8.615850e-47 |
| Msa0270520 | Msa1386330 | 0.801182 | 1.015840e-48 | -8.615850e-47 |
| Msa0311750 | Msa1386330 | 0.829161 | 6.010549e-55 | -8.615850e-47 |
| Msa0342240 | Msa1386330 | 0.810631 | 1.047065e-50 | -8.615850e-47 |
| Msa0360510 | Msa1386330 | 0.805186 | 1.507325e-49 | -8.615850e-47 |
| Msa1109440 | Msa1386330 | 0.833945 | 3.984182e-56 | -8.615850e-47 |
| Msa1112300 | Msa1386330 | 0.822247 | 2.623615e-53 | -8.615850e-47 |
| Msa1121200 | Msa1386330 | 0.810755 | 9.844090e-51 | -8.615850e-47 |
| Msa1135740 | Msa1386330 | 0.851726 | 7.357201e-61 | -8.615850e-47 |
| Msa1136090 | Msa1386330 | 0.837185 | 6.034588e-57 | -8.615850e-47 |
| Msa1146110 | Msa1386330 | 0.819268 | 1.269535e-52 | -8.615850e-47 |
| Msa1173920 | Msa1386330 | 0.837331 | 5.535284e-57 | -8.615850e-47 |
| Msa1178340 | Msa1386330 | 0.822346 | 2.488395e-53 | -8.615850e-47 |
| Msa1182090 | Msa1386330 | 0.807996 | 3.846884e-50 | -8.615850e-47 |
| Msa1187940 | Msa1386330 | 0.813670 | 2.275499e-51 | -8.615850e-47 |
| Msa1187950 | Msa1386330 | 0.854658 | 1.063019e-61 | -8.615850e-47 |
| Msa1192640 | Msa1386330 | 0.822458 | 2.344098e-53 | -8.615850e-47 |
| Msa0491590 | Msa1386330 | 0.826782 | 2.246305e-54 | -8.615850e-47 |
| Msa0502760 | Msa1386330 | 0.819183 | 1.327924e-52 | -8.615850e-47 |
| Msa0506270 | Msa1386330 | 0.827445 | 1.558263e-54 | -8.615850e-47 |
| Msa0548060 | Msa1386330 | 0.801413 | 9.108789e-49 | -8.615850e-47 |
| Msa0564890 | Msa1386330 | 0.803496 | 3.391041e-49 | -8.615850e-47 |
| Msa0596150 | Msa1386330 | 0.811332 | 7.381527e-51 | -8.615850e-47 |
| Msa0844500 | Msa1386330 | 0.806162 | 9.402239e-50 | -8.615850e-47 |
| Msa0846210 | Msa1386330 | 0.800018 | 1.754990e-48 | -8.615850e-47 |
| Msa0846330 | Msa1386330 | 0.835025 | 2.132911e-56 | -8.615850e-47 |
| Msa0846350 | Msa1386330 | 0.830394 | 3.010084e-55 | -8.615850e-47 |
| Msa0854980 | Msa1386330 | 0.826533 | 2.575204e-54 | -8.615850e-47 |
| Msa0858980 | Msa1386330 | 0.822975 | 1.776440e-53 | -8.615850e-47 |
| Msa0865320 | Msa1386330 | 0.854367 | 1.290454e-61 | -8.615850e-47 |
| Msa0877250 | Msa1386330 | 0.810779 | 9.725267e-51 | -8.615850e-47 |
| Msa0885290 | Msa1386330 | 0.805193 | 1.502254e-49 | -8.615850e-47 |
| Msa0888370 | Msa1386330 | 0.818158 | 2.267861e-52 | -8.615850e-47 |
| Msa0898380 | Msa1386330 | 0.812601 | 3.905595e-51 | -8.615850e-47 |
| Msa0907260 | Msa1386330 | 0.819690 | 1.017238e-52 | -8.615850e-47 |
| Msa0954910 | Msa1386330 | 0.836123 | 1.125031e-56 | -8.615850e-47 |
| Msa0956270 | Msa1386330 | 0.821786 | 3.355810e-53 | -8.615850e-47 |
| Msa0957860 | Msa1386330 | 0.943014 | 2.577029e-102 | -8.615850e-47 |
| Msa0957960 | Msa1386330 | 0.943025 | 2.526231e-102 | -8.615850e-47 |
| Msa0979410 | Msa1386330 | 0.806485 | 8.039981e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1386330 | MtrunA17_Chr1g0206471 | 52.222 | 270 | 122 | 1 | 3 | 265 | 4 | 273 | 5.46e-103 | 300 |
| Msa1386330 | MtrunA17_Chr7g0270401 | 47.619 | 273 | 136 | 1 | 1 | 266 | 1 | 273 | 5.09e-92 | 273 |
| Msa1386330 | MtrunA17_Chr1g0193281 | 40.206 | 194 | 89 | 3 | 1 | 180 | 1 | 181 | 4.72e-43 | 145 |
| Msa1386330 | MtrunA17_Chr7g0228461 | 55.556 | 117 | 51 | 1 | 46 | 161 | 1 | 117 | 3.70e-39 | 134 |
| Msa1386330 | MtrunA17_Chr8g0359311 | 54.762 | 84 | 38 | 0 | 183 | 266 | 17 | 100 | 5.39e-28 | 103 |
| Msa1386330 | MtrunA17_Chr1g0207921 | 47.115 | 104 | 46 | 1 | 16 | 110 | 13 | 116 | 2.71e-27 | 104 |
| Msa1386330 | MtrunA17_Chr1g0207921 | 34.821 | 112 | 68 | 1 | 158 | 264 | 86 | 197 | 6.71e-15 | 71.2 |
| Msa1386330 | MtrunA17_Chr3g0123031 | 45.370 | 108 | 41 | 2 | 158 | 265 | 1 | 90 | 2.03e-24 | 93.6 |
| Msa1386330 | MtrunA17_Chr7g0234161 | 46.392 | 97 | 52 | 0 | 134 | 230 | 27 | 123 | 8.56e-23 | 90.5 |
| Msa1386330 | MtrunA17_Chr6g0473661 | 27.723 | 202 | 131 | 3 | 47 | 246 | 259 | 447 | 4.49e-21 | 92.0 |
| Msa1386330 | MtrunA17_Chr8g0361581 | 38.824 | 85 | 45 | 1 | 1 | 78 | 1 | 85 | 1.02e-15 | 73.2 |
| Msa1386330 | MtrunA17_Chr8g0361581 | 38.272 | 81 | 50 | 0 | 184 | 264 | 88 | 168 | 1.81e-15 | 72.4 |
| Msa1386330 | MtrunA17_Chr7g0237161 | 40.741 | 81 | 48 | 0 | 166 | 246 | 3 | 83 | 3.17e-15 | 69.3 |
| Msa1386330 | MtrunA17_Chr5g0423431 | 37.179 | 78 | 42 | 1 | 1 | 71 | 1 | 78 | 1.76e-13 | 64.3 |
| Msa1386330 | MtrunA17_Chr6g0473651 | 28.758 | 153 | 90 | 3 | 101 | 246 | 22 | 162 | 3.48e-13 | 68.6 |
| Msa1386330 | MtrunA17_Chr5g0421721 | 38.043 | 92 | 50 | 1 | 1 | 85 | 1 | 92 | 4.68e-13 | 63.5 |
| Msa1386330 | MtrunA17_Chr1g0178231 | 37.179 | 78 | 49 | 0 | 184 | 261 | 17 | 94 | 1.10e-12 | 63.9 |
| Msa1386330 | MtrunA17_Chr6g0456161 | 55.102 | 49 | 22 | 0 | 203 | 251 | 1 | 49 | 1.86e-12 | 60.8 |
| Msa1386330 | MtrunA17_Chr1g0151111 | 36.709 | 79 | 50 | 0 | 183 | 261 | 17 | 95 | 7.03e-12 | 62.0 |
| Msa1386330 | MtrunA17_Chr4g0054601 | 32.468 | 77 | 52 | 0 | 65 | 141 | 9 | 85 | 8.77e-12 | 60.8 |
| Msa1386330 | MtrunA17_Chr4g0004891 | 70.270 | 37 | 11 | 0 | 45 | 81 | 2 | 38 | 3.46e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 71 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTTCACCCACATGATTA+TGG | 0.200291 | tig0020800:-615 | Msa1386330:intergenic |
| CCAATACTTCGAAGGAATTA+TGG | 0.223973 | tig0020800:-866 | Msa1386330:intergenic |
| GTTGCGGTTTAGGACGTTTA+TGG | 0.225713 | tig0020800:+660 | Msa1386330:CDS |
| GACTTTGTTGAGATCGATTC+TGG | 0.241191 | tig0020800:+1176 | Msa1386330:CDS |
| TTGATGAATGTGGTTGTATA+TGG | 0.268575 | tig0020800:+1355 | Msa1386330:CDS |
| ACCAAAGTCGTAAGCAAAAT+TGG | 0.280462 | tig0020800:-805 | Msa1386330:intergenic |
| ATGCAGGATTTGGCTCATAT+TGG | 0.290632 | tig0020800:+1285 | Msa1386330:intron |
| ACATTAGTATTTGTTGGAAA+TGG | 0.291674 | tig0020800:+975 | Msa1386330:CDS |
| ACAGGCTAAAGTTGCGGTTT+AGG | 0.323474 | tig0020800:+650 | Msa1386330:CDS |
| TGAGATCGATTCTGGATTCT+TGG | 0.324173 | tig0020800:+1184 | Msa1386330:CDS |
| TCAATATCCGTGTCAGAAAT+AGG | 0.332599 | tig0020800:+1003 | Msa1386330:CDS |
| TGGATAACATTAGTATTTGT+TGG | 0.352039 | tig0020800:+969 | Msa1386330:CDS |
| CATTAGTATTTGTTGGAAAT+GGG | 0.358285 | tig0020800:+976 | Msa1386330:CDS |
| TGCAGGATTTGGCTCATATT+GGG | 0.361232 | tig0020800:+1286 | Msa1386330:intron |
| GGTCAAGGCTAGAAGGTTAA+AGG | 0.364042 | tig0020800:+1446 | Msa1386330:CDS |
| TTCTCATTGACACCGATATA+TGG | 0.377396 | tig0020800:-1495 | Msa1386330:intergenic |
| CCATAATTCCTTCGAAGTAT+TGG | 0.379208 | tig0020800:+866 | Msa1386330:CDS |
| GACGGTGACAGTGTCGTTAT+CGG | 0.398058 | tig0020800:+1468 | Msa1386330:CDS |
| TGCACAAATGGCACAGGAAA+AGG | 0.399613 | tig0020800:-1113 | Msa1386330:intergenic |
| CTCGCACACAATCTTCTTGC+TGG | 0.401085 | tig0020800:+481 | Msa1386330:CDS |
| GTTATCGGTGCTCCATATAT+CGG | 0.401878 | tig0020800:+1483 | Msa1386330:CDS |
| CCATAATCATGTGGGTGAAA+TGG | 0.403463 | tig0020800:+615 | Msa1386330:CDS |
| CCTCATGCTCACTTTAAGAT+TGG | 0.409855 | tig0020800:+1405 | Msa1386330:CDS |
| AGATTGGCGGTGGCTGGAAC+AGG | 0.416190 | tig0020800:+1421 | Msa1386330:CDS |
| ACTTTAAGATTGGCGGTGGC+TGG | 0.418939 | tig0020800:+1415 | Msa1386330:CDS |
| TGAAACTGAGAATCTGAGTT+TGG | 0.418987 | tig0020800:+1332 | Msa1386330:CDS |
| TTAAATTCATTATGCACAAA+TGG | 0.431684 | tig0020800:-1125 | Msa1386330:intergenic |
| CATGAGGGCGTGTAACAAAC+TGG | 0.441451 | tig0020800:-1389 | Msa1386330:intergenic |
| ACAGGATGGTCAAGGCTAGA+AGG | 0.443921 | tig0020800:+1439 | Msa1386330:CDS |
| ACGCAATGCAAGCCAGCCTT+TGG | 0.460560 | tig0020800:-919 | Msa1386330:intergenic |
| ACTTTGGTGATAGTGTTGAT+AGG | 0.462057 | tig0020800:+820 | Msa1386330:CDS |
| ACCCACATGATTATGGATCA+AGG | 0.475938 | tig0020800:-608 | Msa1386330:intergenic |
| CATGCTCACTTTAAGATTGG+CGG | 0.482279 | tig0020800:+1408 | Msa1386330:CDS |
| CTGAGTTTGGTTGATGAATG+TGG | 0.483514 | tig0020800:+1345 | Msa1386330:CDS |
| TGATGAATGTGGTTGTATAT+GGG | 0.484155 | tig0020800:+1356 | Msa1386330:CDS |
| TCAGAAATAGGTTGGGTAAG+AGG | 0.500139 | tig0020800:+1015 | Msa1386330:CDS |
| TTGCATAGGAGGTGTGAACC+TGG | 0.509205 | tig0020800:-1048 | Msa1386330:intergenic |
| TATCCGTGTCAGAAATAGGT+TGG | 0.517230 | tig0020800:+1007 | Msa1386330:CDS |
| AAATGGAAAGGAGAGCCAAC+AGG | 0.528770 | tig0020800:+632 | Msa1386330:CDS |
| ATCCGTGTCAGAAATAGGTT+GGG | 0.528825 | tig0020800:+1008 | Msa1386330:CDS |
| GACTTGTATAACGCATCACT+TGG | 0.536646 | tig0020800:+942 | Msa1386330:CDS |
| AAACCGCAACTTTAGCCTGT+TGG | 0.558470 | tig0020800:-647 | Msa1386330:intergenic |
| GCTCACTTTAAGATTGGCGG+TGG | 0.568885 | tig0020800:+1411 | Msa1386330:CDS |
| AAGAAGATTGTGTGCGAGCA+TGG | 0.571428 | tig0020800:-476 | Msa1386330:intergenic |
| TCTCTCTACCAATACTTCGA+AGG | 0.574251 | tig0020800:-874 | Msa1386330:intergenic |
| ATCATGTGGGTGAAATGGAA+AGG | 0.576266 | tig0020800:+620 | Msa1386330:CDS |
| CCAATCTTAAAGTGAGCATG+AGG | 0.578221 | tig0020800:-1405 | Msa1386330:intergenic |
| ATTGGTAGAGAGAAACAACC+AGG | 0.580535 | tig0020800:+884 | Msa1386330:CDS |
| ATAACGCATCACTTGGTGCA+TGG | 0.587916 | tig0020800:+949 | Msa1386330:CDS |
| ACCCTTGATCCATAATCATG+TGG | 0.588030 | tig0020800:+606 | Msa1386330:CDS |
| CTCTCAACAGCGAATTGCAT+AGG | 0.590485 | tig0020800:-1062 | Msa1386330:intergenic |
| TAGTATTTGTTGGAAATGGG+AGG | 0.592775 | tig0020800:+979 | Msa1386330:CDS |
| CCCACATGATTATGGATCAA+GGG | 0.594889 | tig0020800:-607 | Msa1386330:intergenic |
| TCATTATGCACAAATGGCAC+AGG | 0.601819 | tig0020800:-1119 | Msa1386330:intergenic |
| CTATGCAATTCGCTGTTGAG+AGG | 0.602851 | tig0020800:+1063 | Msa1386330:CDS |
| TGCATAGGAGGTGTGAACCT+GGG | 0.603224 | tig0020800:-1047 | Msa1386330:intergenic |
| GAGCCAACAGGCTAAAGTTG+CGG | 0.603827 | tig0020800:+644 | Msa1386330:CDS |
| TACCCAACCTATTTCTGACA+CGG | 0.609870 | tig0020800:-1010 | Msa1386330:intergenic |
| CCCTTGATCCATAATCATGT+GGG | 0.613917 | tig0020800:+607 | Msa1386330:CDS |
| TCAACAGCGAATTGCATAGG+AGG | 0.614378 | tig0020800:-1059 | Msa1386330:intergenic |
| TGTTGATAGGTATGCTACAT+TGG | 0.616810 | tig0020800:+833 | Msa1386330:CDS |
| GTAAGAGGATACGATGTCCC+AGG | 0.623787 | tig0020800:+1030 | Msa1386330:CDS |
| AAGTCGTAAGCAAAATTGGT+TGG | 0.627128 | tig0020800:-801 | Msa1386330:intergenic |
| TGGCGGTGGCTGGAACAGGA+TGG | 0.649155 | tig0020800:+1425 | Msa1386330:CDS |
| TGATAGGTATGCTACATTGG+TGG | 0.670079 | tig0020800:+836 | Msa1386330:CDS |
| TGGCTGGAACAGGATGGTCA+AGG | 0.676417 | tig0020800:+1431 | Msa1386330:CDS |
| AGGGCGTGTAACAAACTGGA+GGG | 0.676724 | tig0020800:-1385 | Msa1386330:intergenic |
| CAATCTTAAAGTGAGCATGA+GGG | 0.680650 | tig0020800:-1404 | Msa1386330:intergenic |
| AAGGCTAGAAGGTTAAAGGA+CGG | 0.693112 | tig0020800:+1450 | Msa1386330:CDS |
| GAGGGCGTGTAACAAACTGG+AGG | 0.699235 | tig0020800:-1386 | Msa1386330:intergenic |
| TTGGTAGAGAGAAACAACCA+GGG | 0.738238 | tig0020800:+885 | Msa1386330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATCAAAAATACATGTAA+GGG | - | tig0020800:546-565 | Msa1386330:intergenic | 15.0% |
| !! | TAAATCAAAAATACATGTAA+GGG | - | tig0020800:546-565 | Msa1386330:intergenic | 15.0% |
| !! | AAATCAAAAATACATGTAAG+GGG | - | tig0020800:545-564 | Msa1386330:intergenic | 20.0% |
| !! | CTAAATCAAAAATACATGTA+AGG | - | tig0020800:547-566 | Msa1386330:intergenic | 20.0% |
| !! | TTAAATTCATTATGCACAAA+TGG | - | tig0020800:1128-1147 | Msa1386330:intergenic | 20.0% |
| !!! | TGTTAAAAAAGATATTGACT+TGG | + | tig0020800:1218-1237 | Msa1386330:intron | 20.0% |
| !! | AAATCAAAAATACATGTAAG+GGG | - | tig0020800:545-564 | Msa1386330:intergenic | 20.0% |
| !! | CTAAATCAAAAATACATGTA+AGG | - | tig0020800:547-566 | Msa1386330:intergenic | 20.0% |
| !! | TTAAATTCATTATGCACAAA+TGG | - | tig0020800:1128-1147 | Msa1386330:intergenic | 20.0% |
| !!! | TGTTAAAAAAGATATTGACT+TGG | + | tig0020800:1218-1237 | Msa1386330:intron | 20.0% |
| ! | AATCAAAAATACATGTAAGG+GGG | - | tig0020800:544-563 | Msa1386330:intergenic | 25.0% |
| !!! | ACACATTTTTTTATGTTGCA+GGG | + | tig0020800:765-784 | Msa1386330:intron | 25.0% |
| ! | TGGATAACATTAGTATTTGT+TGG | + | tig0020800:969-988 | Msa1386330:CDS | 25.0% |
| !! | ACATTAGTATTTGTTGGAAA+TGG | + | tig0020800:975-994 | Msa1386330:CDS | 25.0% |
| !! | CATTAGTATTTGTTGGAAAT+GGG | + | tig0020800:976-995 | Msa1386330:CDS | 25.0% |
| !!! | ATATGATGTTTTGATTATGC+AGG | + | tig0020800:1269-1288 | Msa1386330:intron | 25.0% |
| ! | AATCAAAAATACATGTAAGG+GGG | - | tig0020800:544-563 | Msa1386330:intergenic | 25.0% |
| !!! | ACACATTTTTTTATGTTGCA+GGG | + | tig0020800:765-784 | Msa1386330:intron | 25.0% |
| ! | TGGATAACATTAGTATTTGT+TGG | + | tig0020800:969-988 | Msa1386330:CDS | 25.0% |
| !! | ACATTAGTATTTGTTGGAAA+TGG | + | tig0020800:975-994 | Msa1386330:CDS | 25.0% |
| !! | CATTAGTATTTGTTGGAAAT+GGG | + | tig0020800:976-995 | Msa1386330:CDS | 25.0% |
| !!! | ATATGATGTTTTGATTATGC+AGG | + | tig0020800:1269-1288 | Msa1386330:intron | 25.0% |
| !!! | CACACATTTTTTTATGTTGC+AGG | + | tig0020800:764-783 | Msa1386330:intron | 30.0% |
| !!! | TGTTTTGATTATGCAGGATT+TGG | + | tig0020800:1275-1294 | Msa1386330:intron | 30.0% |
| TTGATGAATGTGGTTGTATA+TGG | + | tig0020800:1355-1374 | Msa1386330:CDS | 30.0% | |
| TGATGAATGTGGTTGTATAT+GGG | + | tig0020800:1356-1375 | Msa1386330:CDS | 30.0% | |
| !!! | CACACATTTTTTTATGTTGC+AGG | + | tig0020800:764-783 | Msa1386330:intron | 30.0% |
| !!! | TGTTTTGATTATGCAGGATT+TGG | + | tig0020800:1275-1294 | Msa1386330:intron | 30.0% |
| TTGATGAATGTGGTTGTATA+TGG | + | tig0020800:1355-1374 | Msa1386330:CDS | 30.0% | |
| TGATGAATGTGGTTGTATAT+GGG | + | tig0020800:1356-1375 | Msa1386330:CDS | 30.0% | |
| ! | ATGTCATTGTTGTTCAATCC+AGG | + | tig0020800:583-602 | Msa1386330:intron | 35.0% |
| ! | ACCTGCTTAATCAACGTTTT+AGG | + | tig0020800:732-751 | Msa1386330:intron | 35.0% |
| ! | ACCTAAAACGTTGATTAAGC+AGG | - | tig0020800:736-755 | Msa1386330:intergenic | 35.0% |
| AAGTCGTAAGCAAAATTGGT+TGG | - | tig0020800:804-823 | Msa1386330:intergenic | 35.0% | |
| ! | ACCAATTTTGCTTACGACTT+TGG | + | tig0020800:804-823 | Msa1386330:CDS | 35.0% |
| ACCAAAGTCGTAAGCAAAAT+TGG | - | tig0020800:808-827 | Msa1386330:intergenic | 35.0% | |
| !! | ACTTTGGTGATAGTGTTGAT+AGG | + | tig0020800:820-839 | Msa1386330:CDS | 35.0% |
| ! | TGTTGATAGGTATGCTACAT+TGG | + | tig0020800:833-852 | Msa1386330:CDS | 35.0% |
| CCAATACTTCGAAGGAATTA+TGG | - | tig0020800:869-888 | Msa1386330:intergenic | 35.0% | |
| CCATAATTCCTTCGAAGTAT+TGG | + | tig0020800:866-885 | Msa1386330:CDS | 35.0% | |
| CTTTGGTGAAAAATATTCCC+TGG | - | tig0020800:905-924 | Msa1386330:intergenic | 35.0% | |
| ! | CAGGGAATATTTTTCACCAA+AGG | + | tig0020800:903-922 | Msa1386330:CDS | 35.0% |
| ! | GAATATTTTTCACCAAAGGC+TGG | + | tig0020800:907-926 | Msa1386330:CDS | 35.0% |
| ! | TAGTATTTGTTGGAAATGGG+AGG | + | tig0020800:979-998 | Msa1386330:CDS | 35.0% |
| TCAATATCCGTGTCAGAAAT+AGG | + | tig0020800:1003-1022 | Msa1386330:CDS | 35.0% | |
| TGAAACTGAGAATCTGAGTT+TGG | + | tig0020800:1332-1351 | Msa1386330:CDS | 35.0% | |
| CAATCTTAAAGTGAGCATGA+GGG | - | tig0020800:1407-1426 | Msa1386330:intergenic | 35.0% | |
| TTCTCATTGACACCGATATA+TGG | - | tig0020800:1498-1517 | Msa1386330:intergenic | 35.0% | |
| ! | ATGTCATTGTTGTTCAATCC+AGG | + | tig0020800:583-602 | Msa1386330:intron | 35.0% |
| ! | ACCTGCTTAATCAACGTTTT+AGG | + | tig0020800:732-751 | Msa1386330:intron | 35.0% |
| ! | ACCTAAAACGTTGATTAAGC+AGG | - | tig0020800:736-755 | Msa1386330:intergenic | 35.0% |
| AAGTCGTAAGCAAAATTGGT+TGG | - | tig0020800:804-823 | Msa1386330:intergenic | 35.0% | |
| ! | ACCAATTTTGCTTACGACTT+TGG | + | tig0020800:804-823 | Msa1386330:CDS | 35.0% |
| ACCAAAGTCGTAAGCAAAAT+TGG | - | tig0020800:808-827 | Msa1386330:intergenic | 35.0% | |
| !! | ACTTTGGTGATAGTGTTGAT+AGG | + | tig0020800:820-839 | Msa1386330:CDS | 35.0% |
| ! | TGTTGATAGGTATGCTACAT+TGG | + | tig0020800:833-852 | Msa1386330:CDS | 35.0% |
| CCAATACTTCGAAGGAATTA+TGG | - | tig0020800:869-888 | Msa1386330:intergenic | 35.0% | |
| CCATAATTCCTTCGAAGTAT+TGG | + | tig0020800:866-885 | Msa1386330:CDS | 35.0% | |
| CTTTGGTGAAAAATATTCCC+TGG | - | tig0020800:905-924 | Msa1386330:intergenic | 35.0% | |
| ! | CAGGGAATATTTTTCACCAA+AGG | + | tig0020800:903-922 | Msa1386330:CDS | 35.0% |
| ! | GAATATTTTTCACCAAAGGC+TGG | + | tig0020800:907-926 | Msa1386330:CDS | 35.0% |
| ! | TAGTATTTGTTGGAAATGGG+AGG | + | tig0020800:979-998 | Msa1386330:CDS | 35.0% |
| TCAATATCCGTGTCAGAAAT+AGG | + | tig0020800:1003-1022 | Msa1386330:CDS | 35.0% | |
| TGAAACTGAGAATCTGAGTT+TGG | + | tig0020800:1332-1351 | Msa1386330:CDS | 35.0% | |
| CAATCTTAAAGTGAGCATGA+GGG | - | tig0020800:1407-1426 | Msa1386330:intergenic | 35.0% | |
| TTCTCATTGACACCGATATA+TGG | - | tig0020800:1498-1517 | Msa1386330:intergenic | 35.0% | |
| ACCCTTGATCCATAATCATG+TGG | + | tig0020800:606-625 | Msa1386330:CDS | 40.0% | |
| CCCACATGATTATGGATCAA+GGG | - | tig0020800:610-629 | Msa1386330:intergenic | 40.0% | |
| CCCTTGATCCATAATCATGT+GGG | + | tig0020800:607-626 | Msa1386330:CDS | 40.0% | |
| ACCCACATGATTATGGATCA+AGG | - | tig0020800:611-630 | Msa1386330:intergenic | 40.0% | |
| CCATTTCACCCACATGATTA+TGG | - | tig0020800:618-637 | Msa1386330:intergenic | 40.0% | |
| CCATAATCATGTGGGTGAAA+TGG | + | tig0020800:615-634 | Msa1386330:CDS | 40.0% | |
| ATCATGTGGGTGAAATGGAA+AGG | + | tig0020800:620-639 | Msa1386330:CDS | 40.0% | |
| TGATAGGTATGCTACATTGG+TGG | + | tig0020800:836-855 | Msa1386330:CDS | 40.0% | |
| TCTCTCTACCAATACTTCGA+AGG | - | tig0020800:877-896 | Msa1386330:intergenic | 40.0% | |
| ATTGGTAGAGAGAAACAACC+AGG | + | tig0020800:884-903 | Msa1386330:CDS | 40.0% | |
| TTGGTAGAGAGAAACAACCA+GGG | + | tig0020800:885-904 | Msa1386330:CDS | 40.0% | |
| GACTTGTATAACGCATCACT+TGG | + | tig0020800:942-961 | Msa1386330:CDS | 40.0% | |
| TATCCGTGTCAGAAATAGGT+TGG | + | tig0020800:1007-1026 | Msa1386330:CDS | 40.0% | |
| ATCCGTGTCAGAAATAGGTT+GGG | + | tig0020800:1008-1027 | Msa1386330:CDS | 40.0% | |
| !! | TACCCAACCTATTTCTGACA+CGG | - | tig0020800:1013-1032 | Msa1386330:intergenic | 40.0% |
| ! | TCAGAAATAGGTTGGGTAAG+AGG | + | tig0020800:1015-1034 | Msa1386330:CDS | 40.0% |
| TCATTATGCACAAATGGCAC+AGG | - | tig0020800:1122-1141 | Msa1386330:intergenic | 40.0% | |
| ! | GACTTTGTTGAGATCGATTC+TGG | + | tig0020800:1176-1195 | Msa1386330:CDS | 40.0% |
| ! | TGAGATCGATTCTGGATTCT+TGG | + | tig0020800:1184-1203 | Msa1386330:CDS | 40.0% |
| ! | ATGCAGGATTTGGCTCATAT+TGG | + | tig0020800:1285-1304 | Msa1386330:intron | 40.0% |
| ! | TGCAGGATTTGGCTCATATT+GGG | + | tig0020800:1286-1305 | Msa1386330:intron | 40.0% |
| !! | CTGAGTTTGGTTGATGAATG+TGG | + | tig0020800:1345-1364 | Msa1386330:CDS | 40.0% |
| CCAATCTTAAAGTGAGCATG+AGG | - | tig0020800:1408-1427 | Msa1386330:intergenic | 40.0% | |
| !! | CCTCATGCTCACTTTAAGAT+TGG | + | tig0020800:1405-1424 | Msa1386330:CDS | 40.0% |
| !! | CATGCTCACTTTAAGATTGG+CGG | + | tig0020800:1408-1427 | Msa1386330:CDS | 40.0% |
| AAGGCTAGAAGGTTAAAGGA+CGG | + | tig0020800:1450-1469 | Msa1386330:CDS | 40.0% | |
| ! | GTTATCGGTGCTCCATATAT+CGG | + | tig0020800:1483-1502 | Msa1386330:CDS | 40.0% |
| ACCCTTGATCCATAATCATG+TGG | + | tig0020800:606-625 | Msa1386330:CDS | 40.0% | |
| CCCACATGATTATGGATCAA+GGG | - | tig0020800:610-629 | Msa1386330:intergenic | 40.0% | |
| CCCTTGATCCATAATCATGT+GGG | + | tig0020800:607-626 | Msa1386330:CDS | 40.0% | |
| ACCCACATGATTATGGATCA+AGG | - | tig0020800:611-630 | Msa1386330:intergenic | 40.0% | |
| CCATTTCACCCACATGATTA+TGG | - | tig0020800:618-637 | Msa1386330:intergenic | 40.0% | |
| CCATAATCATGTGGGTGAAA+TGG | + | tig0020800:615-634 | Msa1386330:CDS | 40.0% | |
| ATCATGTGGGTGAAATGGAA+AGG | + | tig0020800:620-639 | Msa1386330:CDS | 40.0% | |
| TGATAGGTATGCTACATTGG+TGG | + | tig0020800:836-855 | Msa1386330:CDS | 40.0% | |
| TCTCTCTACCAATACTTCGA+AGG | - | tig0020800:877-896 | Msa1386330:intergenic | 40.0% | |
| ATTGGTAGAGAGAAACAACC+AGG | + | tig0020800:884-903 | Msa1386330:CDS | 40.0% | |
| TTGGTAGAGAGAAACAACCA+GGG | + | tig0020800:885-904 | Msa1386330:CDS | 40.0% | |
| GACTTGTATAACGCATCACT+TGG | + | tig0020800:942-961 | Msa1386330:CDS | 40.0% | |
| TATCCGTGTCAGAAATAGGT+TGG | + | tig0020800:1007-1026 | Msa1386330:CDS | 40.0% | |
| ATCCGTGTCAGAAATAGGTT+GGG | + | tig0020800:1008-1027 | Msa1386330:CDS | 40.0% | |
| !! | TACCCAACCTATTTCTGACA+CGG | - | tig0020800:1013-1032 | Msa1386330:intergenic | 40.0% |
| ! | TCAGAAATAGGTTGGGTAAG+AGG | + | tig0020800:1015-1034 | Msa1386330:CDS | 40.0% |
| TCATTATGCACAAATGGCAC+AGG | - | tig0020800:1122-1141 | Msa1386330:intergenic | 40.0% | |
| ! | GACTTTGTTGAGATCGATTC+TGG | + | tig0020800:1176-1195 | Msa1386330:CDS | 40.0% |
| ! | TGAGATCGATTCTGGATTCT+TGG | + | tig0020800:1184-1203 | Msa1386330:CDS | 40.0% |
| ! | ATGCAGGATTTGGCTCATAT+TGG | + | tig0020800:1285-1304 | Msa1386330:intron | 40.0% |
| ! | TGCAGGATTTGGCTCATATT+GGG | + | tig0020800:1286-1305 | Msa1386330:intron | 40.0% |
| !! | CTGAGTTTGGTTGATGAATG+TGG | + | tig0020800:1345-1364 | Msa1386330:CDS | 40.0% |
| CCAATCTTAAAGTGAGCATG+AGG | - | tig0020800:1408-1427 | Msa1386330:intergenic | 40.0% | |
| !! | CCTCATGCTCACTTTAAGAT+TGG | + | tig0020800:1405-1424 | Msa1386330:CDS | 40.0% |
| !! | CATGCTCACTTTAAGATTGG+CGG | + | tig0020800:1408-1427 | Msa1386330:CDS | 40.0% |
| AAGGCTAGAAGGTTAAAGGA+CGG | + | tig0020800:1450-1469 | Msa1386330:CDS | 40.0% | |
| ! | GTTATCGGTGCTCCATATAT+CGG | + | tig0020800:1483-1502 | Msa1386330:CDS | 40.0% |
| AAGAAGATTGTGTGCGAGCA+TGG | - | tig0020800:479-498 | None:intergenic | 45.0% | |
| TGATTATGGATCAAGGGTCC+TGG | - | tig0020800:604-623 | Msa1386330:intergenic | 45.0% | |
| AAATGGAAAGGAGAGCCAAC+AGG | + | tig0020800:632-651 | Msa1386330:CDS | 45.0% | |
| AAACCGCAACTTTAGCCTGT+TGG | - | tig0020800:650-669 | Msa1386330:intergenic | 45.0% | |
| ACAGGCTAAAGTTGCGGTTT+AGG | + | tig0020800:650-669 | Msa1386330:CDS | 45.0% | |
| ! | GTTGCGGTTTAGGACGTTTA+TGG | + | tig0020800:660-679 | Msa1386330:CDS | 45.0% |
| !! | ATAACGCATCACTTGGTGCA+TGG | + | tig0020800:949-968 | Msa1386330:CDS | 45.0% |
| TCAACAGCGAATTGCATAGG+AGG | - | tig0020800:1062-1081 | Msa1386330:intergenic | 45.0% | |
| CTCTCAACAGCGAATTGCAT+AGG | - | tig0020800:1065-1084 | Msa1386330:intergenic | 45.0% | |
| CTATGCAATTCGCTGTTGAG+AGG | + | tig0020800:1063-1082 | Msa1386330:CDS | 45.0% | |
| TGCACAAATGGCACAGGAAA+AGG | - | tig0020800:1116-1135 | Msa1386330:intergenic | 45.0% | |
| GGTCAAGGCTAGAAGGTTAA+AGG | + | tig0020800:1446-1465 | Msa1386330:CDS | 45.0% | |
| AAGAAGATTGTGTGCGAGCA+TGG | - | tig0020800:479-498 | Msa1386330:intergenic | 45.0% | |
| TGATTATGGATCAAGGGTCC+TGG | - | tig0020800:604-623 | Msa1386330:intergenic | 45.0% | |
| AAATGGAAAGGAGAGCCAAC+AGG | + | tig0020800:632-651 | Msa1386330:CDS | 45.0% | |
| AAACCGCAACTTTAGCCTGT+TGG | - | tig0020800:650-669 | Msa1386330:intergenic | 45.0% | |
| ACAGGCTAAAGTTGCGGTTT+AGG | + | tig0020800:650-669 | Msa1386330:CDS | 45.0% | |
| ! | GTTGCGGTTTAGGACGTTTA+TGG | + | tig0020800:660-679 | Msa1386330:CDS | 45.0% |
| !! | ATAACGCATCACTTGGTGCA+TGG | + | tig0020800:949-968 | Msa1386330:CDS | 45.0% |
| TCAACAGCGAATTGCATAGG+AGG | - | tig0020800:1062-1081 | Msa1386330:intergenic | 45.0% | |
| CTCTCAACAGCGAATTGCAT+AGG | - | tig0020800:1065-1084 | Msa1386330:intergenic | 45.0% | |
| CTATGCAATTCGCTGTTGAG+AGG | + | tig0020800:1063-1082 | Msa1386330:CDS | 45.0% | |
| TGCACAAATGGCACAGGAAA+AGG | - | tig0020800:1116-1135 | Msa1386330:intergenic | 45.0% | |
| GGTCAAGGCTAGAAGGTTAA+AGG | + | tig0020800:1446-1465 | Msa1386330:CDS | 45.0% | |
| CTCGCACACAATCTTCTTGC+TGG | + | tig0020800:481-500 | Msa1386330:CDS | 50.0% | |
| GAGCCAACAGGCTAAAGTTG+CGG | + | tig0020800:644-663 | Msa1386330:CDS | 50.0% | |
| GTAAGAGGATACGATGTCCC+AGG | + | tig0020800:1030-1049 | Msa1386330:CDS | 50.0% | |
| ! | TGCATAGGAGGTGTGAACCT+GGG | - | tig0020800:1050-1069 | Msa1386330:intergenic | 50.0% |
| ! | TTGCATAGGAGGTGTGAACC+TGG | - | tig0020800:1051-1070 | Msa1386330:intergenic | 50.0% |
| AGGGCGTGTAACAAACTGGA+GGG | - | tig0020800:1388-1407 | Msa1386330:intergenic | 50.0% | |
| ! | CATGAGGGCGTGTAACAAAC+TGG | - | tig0020800:1392-1411 | Msa1386330:intergenic | 50.0% |
| !! | GCTCACTTTAAGATTGGCGG+TGG | + | tig0020800:1411-1430 | Msa1386330:CDS | 50.0% |
| !! | ACTTTAAGATTGGCGGTGGC+TGG | + | tig0020800:1415-1434 | Msa1386330:CDS | 50.0% |
| ACAGGATGGTCAAGGCTAGA+AGG | + | tig0020800:1439-1458 | Msa1386330:CDS | 50.0% | |
| ! | GACGGTGACAGTGTCGTTAT+CGG | + | tig0020800:1468-1487 | Msa1386330:CDS | 50.0% |
| CTCGCACACAATCTTCTTGC+TGG | + | tig0020800:481-500 | Msa1386330:CDS | 50.0% | |
| GAGCCAACAGGCTAAAGTTG+CGG | + | tig0020800:644-663 | Msa1386330:CDS | 50.0% | |
| GTAAGAGGATACGATGTCCC+AGG | + | tig0020800:1030-1049 | Msa1386330:CDS | 50.0% | |
| ! | TGCATAGGAGGTGTGAACCT+GGG | - | tig0020800:1050-1069 | Msa1386330:intergenic | 50.0% |
| ! | TTGCATAGGAGGTGTGAACC+TGG | - | tig0020800:1051-1070 | Msa1386330:intergenic | 50.0% |
| AGGGCGTGTAACAAACTGGA+GGG | - | tig0020800:1388-1407 | Msa1386330:intergenic | 50.0% | |
| ! | CATGAGGGCGTGTAACAAAC+TGG | - | tig0020800:1392-1411 | Msa1386330:intergenic | 50.0% |
| !! | GCTCACTTTAAGATTGGCGG+TGG | + | tig0020800:1411-1430 | Msa1386330:CDS | 50.0% |
| !! | ACTTTAAGATTGGCGGTGGC+TGG | + | tig0020800:1415-1434 | Msa1386330:CDS | 50.0% |
| ACAGGATGGTCAAGGCTAGA+AGG | + | tig0020800:1439-1458 | Msa1386330:CDS | 50.0% | |
| ! | GACGGTGACAGTGTCGTTAT+CGG | + | tig0020800:1468-1487 | Msa1386330:CDS | 50.0% |
| ACGCAATGCAAGCCAGCCTT+TGG | - | tig0020800:922-941 | Msa1386330:intergenic | 55.0% | |
| ! | GAGGGCGTGTAACAAACTGG+AGG | - | tig0020800:1389-1408 | Msa1386330:intergenic | 55.0% |
| TGGCTGGAACAGGATGGTCA+AGG | + | tig0020800:1431-1450 | Msa1386330:CDS | 55.0% | |
| ACGCAATGCAAGCCAGCCTT+TGG | - | tig0020800:922-941 | Msa1386330:intergenic | 55.0% | |
| ! | GAGGGCGTGTAACAAACTGG+AGG | - | tig0020800:1389-1408 | Msa1386330:intergenic | 55.0% |
| TGGCTGGAACAGGATGGTCA+AGG | + | tig0020800:1431-1450 | Msa1386330:CDS | 55.0% | |
| AGATTGGCGGTGGCTGGAAC+AGG | + | tig0020800:1421-1440 | Msa1386330:CDS | 60.0% | |
| AGATTGGCGGTGGCTGGAAC+AGG | + | tig0020800:1421-1440 | Msa1386330:CDS | 60.0% | |
| TGGCGGTGGCTGGAACAGGA+TGG | + | tig0020800:1425-1444 | Msa1386330:CDS | 65.0% | |
| TGGCGGTGGCTGGAACAGGA+TGG | + | tig0020800:1425-1444 | Msa1386330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020800 | gene | 454 | 1545 | 454 | ID=Msa1386330;Name=Msa1386330 |
| tig0020800 | mRNA | 454 | 1545 | 454 | ID=Msa1386330-mRNA-1;Parent=Msa1386330;Name=Msa1386330-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|0.5|1|1|4|0|266 |
| tig0020800 | exon | 454 | 502 | 454 | ID=Msa1386330-mRNA-1:exon:10105;Parent=Msa1386330-mRNA-1 |
| tig0020800 | exon | 605 | 681 | 605 | ID=Msa1386330-mRNA-1:exon:10106;Parent=Msa1386330-mRNA-1 |
| tig0020800 | exon | 786 | 1205 | 786 | ID=Msa1386330-mRNA-1:exon:10107;Parent=Msa1386330-mRNA-1 |
| tig0020800 | exon | 1291 | 1545 | 1291 | ID=Msa1386330-mRNA-1:exon:10108;Parent=Msa1386330-mRNA-1 |
| tig0020800 | CDS | 454 | 502 | 454 | ID=Msa1386330-mRNA-1:cds;Parent=Msa1386330-mRNA-1 |
| tig0020800 | CDS | 605 | 681 | 605 | ID=Msa1386330-mRNA-1:cds;Parent=Msa1386330-mRNA-1 |
| tig0020800 | CDS | 786 | 1205 | 786 | ID=Msa1386330-mRNA-1:cds;Parent=Msa1386330-mRNA-1 |
| tig0020800 | CDS | 1291 | 1545 | 1291 | ID=Msa1386330-mRNA-1:cds;Parent=Msa1386330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
