Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057920 | XP_027334048.1 | 70.769 | 195 | 57 | 0 | 4 | 198 | 185 | 379 | 5.39e-98 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057920 | sp|A9X7L0|ANMT_RUTGR | 54.315 | 197 | 90 | 0 | 2 | 198 | 168 | 364 | 5.42e-78 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057920 | A0A2K3NEC3 | 69.898 | 196 | 59 | 0 | 3 | 198 | 177 | 372 | 1.57e-96 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0726140 | Msa1057920 | 0.813430 | 2.569867e-51 | -8.615850e-47 |
| Msa0743810 | Msa1057920 | 0.801041 | 1.085841e-48 | -8.615850e-47 |
| Msa0745060 | Msa1057920 | 0.815057 | 1.123236e-51 | -8.615850e-47 |
| Msa0784290 | Msa1057920 | 0.815869 | 7.409560e-52 | -8.615850e-47 |
| Msa0825860 | Msa1057920 | 0.822084 | 2.861485e-53 | -8.615850e-47 |
| Msa0145750 | Msa1057920 | 0.801586 | 8.398219e-49 | -8.615850e-47 |
| Msa0231000 | Msa1057920 | 0.806211 | 9.181893e-50 | -8.615850e-47 |
| Msa0232850 | Msa1057920 | 0.826409 | 2.756628e-54 | -8.615850e-47 |
| Msa0384800 | Msa1057920 | 0.800647 | 1.306693e-48 | -8.615850e-47 |
| Msa0384890 | Msa1057920 | 0.802602 | 5.188828e-49 | -8.615850e-47 |
| Msa0406120 | Msa1057920 | 0.808199 | 3.482367e-50 | -8.615850e-47 |
| Msa0414410 | Msa1057920 | 0.802047 | 6.751289e-49 | -8.615850e-47 |
| Msa0423020 | Msa1057920 | 0.817482 | 3.222415e-52 | -8.615850e-47 |
| Msa0435230 | Msa1057920 | 0.825948 | 3.547450e-54 | -8.615850e-47 |
| Msa0436780 | Msa1057920 | 0.809161 | 2.169565e-50 | -8.615850e-47 |
| Msa0452900 | Msa1057920 | 0.804444 | 2.153574e-49 | -8.615850e-47 |
| Msa0453120 | Msa1057920 | 0.809616 | 1.732634e-50 | -8.615850e-47 |
| Msa0479340 | Msa1057920 | 0.804150 | 2.480512e-49 | -8.615850e-47 |
| Msa0989060 | Msa1057920 | 0.817581 | 3.062244e-52 | -8.615850e-47 |
| Msa0991830 | Msa1057920 | 0.807742 | 4.355975e-50 | -8.615850e-47 |
| Msa1014540 | Msa1057920 | 0.800693 | 1.278550e-48 | -8.615850e-47 |
| Msa1024240 | Msa1057920 | 0.813647 | 2.302103e-51 | -8.615850e-47 |
| Msa1025370 | Msa1057920 | 0.804962 | 1.678891e-49 | -8.615850e-47 |
| Msa1044840 | Msa1057920 | 0.802448 | 5.582643e-49 | -8.615850e-47 |
| Msa1057920 | Msa1092990 | 0.818660 | 1.746035e-52 | -8.615850e-47 |
| Msa1057920 | Msa1136090 | 0.844887 | 5.722195e-59 | -8.615850e-47 |
| Msa1057920 | Msa1182090 | 0.806283 | 8.867541e-50 | -8.615850e-47 |
| Msa1057920 | Msa1187950 | 0.812151 | 4.896397e-51 | -8.615850e-47 |
| Msa1057920 | Msa1246880 | 0.800160 | 1.641726e-48 | -8.615850e-47 |
| Msa1057920 | Msa1269670 | 0.807278 | 5.464353e-50 | -8.615850e-47 |
| Msa1057920 | Msa1270230 | 0.803641 | 3.164117e-49 | -8.615850e-47 |
| Msa1057920 | Msa1273230 | 0.816658 | 4.937098e-52 | -8.615850e-47 |
| Msa1057920 | Msa1283330 | 0.824157 | 9.398998e-54 | -8.615850e-47 |
| Msa1057920 | Msa1369430 | 0.807212 | 5.645157e-50 | -8.615850e-47 |
| Msa1057920 | Msa1386330 | 0.803492 | 3.396936e-49 | -8.615850e-47 |
| Msa1057920 | Msa1404000 | 0.824982 | 6.006682e-54 | -8.615850e-47 |
| Msa1057920 | Msa1422180 | 0.803670 | 3.120072e-49 | -8.615850e-47 |
| Msa0270520 | Msa1057920 | 0.808142 | 3.581299e-50 | -8.615850e-47 |
| Msa0342240 | Msa1057920 | 0.808288 | 3.333995e-50 | -8.615850e-47 |
| Msa0349360 | Msa1057920 | 0.805342 | 1.398165e-49 | -8.615850e-47 |
| Msa0506270 | Msa1057920 | 0.812684 | 3.745939e-51 | -8.615850e-47 |
| Msa0846350 | Msa1057920 | 0.803924 | 2.763213e-49 | -8.615850e-47 |
| Msa0865320 | Msa1057920 | 0.806776 | 6.979564e-50 | -8.615850e-47 |
| Msa0885280 | Msa1057920 | 0.815583 | 8.584541e-52 | -8.615850e-47 |
| Msa0897880 | Msa1057920 | 0.801910 | 7.203584e-49 | -8.615850e-47 |
| Msa0898380 | Msa1057920 | 0.800705 | 1.271440e-48 | -8.615850e-47 |
| Msa0899450 | Msa1057920 | 0.808357 | 3.223160e-50 | -8.615850e-47 |
| Msa0954910 | Msa1057920 | 0.807109 | 5.936041e-50 | -8.615850e-47 |
| Msa0958550 | Msa1057920 | 0.805804 | 1.118383e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057920 | MtrunA17_Chr8g0345851 | 68.878 | 196 | 61 | 0 | 3 | 198 | 95 | 290 | 1.06e-99 | 290 |
| Msa1057920 | MtrunA17_Chr7g0276401 | 66.327 | 196 | 66 | 0 | 3 | 198 | 180 | 375 | 6.81e-95 | 281 |
| Msa1057920 | MtrunA17_Chr7g0276411 | 58.883 | 197 | 81 | 0 | 2 | 198 | 166 | 362 | 7.69e-87 | 259 |
| Msa1057920 | MtrunA17_Chr8g0367491 | 58.376 | 197 | 82 | 0 | 2 | 198 | 180 | 376 | 8.39e-85 | 255 |
| Msa1057920 | MtrunA17_Chr8g0367451 | 59.898 | 197 | 79 | 0 | 2 | 198 | 180 | 376 | 4.78e-83 | 251 |
| Msa1057920 | MtrunA17_Chr8g0367441 | 58.883 | 197 | 81 | 0 | 2 | 198 | 181 | 377 | 2.02e-82 | 249 |
| Msa1057920 | MtrunA17_Chr8g0367501 | 57.286 | 199 | 83 | 1 | 2 | 198 | 167 | 365 | 4.50e-80 | 244 |
| Msa1057920 | MtrunA17_Chr3g0128011 | 52.284 | 197 | 92 | 2 | 3 | 198 | 222 | 417 | 1.51e-70 | 220 |
| Msa1057920 | MtrunA17_Chr5g0448091 | 51.269 | 197 | 96 | 0 | 2 | 198 | 167 | 363 | 6.90e-70 | 216 |
| Msa1057920 | MtrunA17_Chr8g0367381 | 60.366 | 164 | 65 | 0 | 2 | 165 | 162 | 325 | 2.03e-69 | 214 |
| Msa1057920 | MtrunA17_Chr6g0482291 | 52.717 | 184 | 79 | 1 | 15 | 198 | 1 | 176 | 3.24e-68 | 206 |
| Msa1057920 | MtrunA17_Chr7g0218181 | 52.041 | 196 | 92 | 2 | 4 | 198 | 173 | 367 | 2.21e-62 | 197 |
| Msa1057920 | MtrunA17_Chr1g0163621 | 52.261 | 199 | 88 | 4 | 4 | 198 | 189 | 384 | 7.97e-62 | 196 |
| Msa1057920 | MtrunA17_Chr1g0163611 | 51.000 | 200 | 91 | 3 | 3 | 198 | 174 | 370 | 6.02e-61 | 194 |
| Msa1057920 | MtrunA17_Chr3g0085201 | 51.531 | 196 | 92 | 2 | 4 | 198 | 164 | 357 | 1.11e-60 | 192 |
| Msa1057920 | MtrunA17_Chr7g0218131 | 50.000 | 196 | 96 | 2 | 4 | 198 | 176 | 370 | 2.26e-60 | 192 |
| Msa1057920 | MtrunA17_Chr3g0085211 | 51.020 | 196 | 93 | 2 | 4 | 198 | 177 | 370 | 1.33e-59 | 190 |
| Msa1057920 | MtrunA17_Chr1g0163601 | 49.500 | 200 | 94 | 4 | 3 | 198 | 174 | 370 | 2.82e-58 | 187 |
| Msa1057920 | MtrunA17_Chr7g0218211 | 48.980 | 196 | 98 | 2 | 4 | 198 | 175 | 369 | 3.30e-58 | 187 |
| Msa1057920 | MtrunA17_Chr1g0200491 | 50.000 | 200 | 96 | 3 | 1 | 198 | 175 | 372 | 1.31e-57 | 185 |
| Msa1057920 | MtrunA17_Chr7g0218271 | 50.515 | 194 | 94 | 2 | 6 | 198 | 183 | 375 | 1.56e-55 | 180 |
| Msa1057920 | MtrunA17_Chr7g0218301 | 51.020 | 196 | 94 | 2 | 4 | 198 | 181 | 375 | 1.67e-55 | 180 |
| Msa1057920 | MtrunA17_Chr7g0218261 | 48.469 | 196 | 99 | 2 | 4 | 198 | 174 | 368 | 9.10e-55 | 178 |
| Msa1057920 | MtrunA17_Chr2g0307521 | 46.970 | 198 | 99 | 3 | 4 | 198 | 169 | 363 | 1.62e-52 | 172 |
| Msa1057920 | MtrunA17_Chr4g0022021 | 48.235 | 170 | 83 | 4 | 2 | 168 | 171 | 338 | 1.61e-50 | 167 |
| Msa1057920 | MtrunA17_Chr4g0021981 | 45.614 | 171 | 88 | 4 | 3 | 170 | 172 | 340 | 3.55e-47 | 158 |
| Msa1057920 | MtrunA17_Chr2g0314271 | 38.265 | 196 | 119 | 2 | 5 | 198 | 159 | 354 | 1.76e-45 | 153 |
| Msa1057920 | MtrunA17_Chr8g0367461 | 58.929 | 112 | 46 | 0 | 87 | 198 | 1 | 112 | 8.26e-43 | 139 |
| Msa1057920 | MtrunA17_Chr3g0130011 | 40.704 | 199 | 110 | 4 | 5 | 198 | 163 | 358 | 1.08e-42 | 146 |
| Msa1057920 | MtrunA17_Chr3g0130061 | 39.548 | 177 | 105 | 2 | 4 | 178 | 162 | 338 | 6.30e-41 | 142 |
| Msa1057920 | MtrunA17_Chr3g0121301 | 39.412 | 170 | 100 | 3 | 4 | 170 | 164 | 333 | 6.25e-38 | 134 |
| Msa1057920 | MtrunA17_Chr8g0367401 | 59.596 | 99 | 40 | 0 | 2 | 100 | 12 | 110 | 3.47e-37 | 126 |
| Msa1057920 | MtrunA17_Chr8g0367391 | 52.830 | 106 | 50 | 0 | 93 | 198 | 29 | 134 | 1.03e-35 | 122 |
| Msa1057920 | MtrunA17_Chr7g0219161 | 37.368 | 190 | 114 | 2 | 1 | 187 | 159 | 346 | 1.38e-35 | 128 |
| Msa1057920 | MtrunA17_Chr5g0432241 | 33.990 | 203 | 126 | 4 | 1 | 197 | 159 | 359 | 9.86e-34 | 123 |
| Msa1057920 | MtrunA17_Chr7g0223241 | 34.694 | 196 | 124 | 2 | 4 | 196 | 154 | 348 | 2.57e-33 | 122 |
| Msa1057920 | MtrunA17_Chr4g0040621 | 36.364 | 198 | 121 | 3 | 4 | 197 | 172 | 368 | 3.20e-33 | 122 |
| Msa1057920 | MtrunA17_Chr1g0188391 | 34.518 | 197 | 123 | 3 | 5 | 197 | 166 | 360 | 1.19e-32 | 120 |
| Msa1057920 | MtrunA17_Chr1g0188371 | 37.079 | 178 | 107 | 3 | 5 | 178 | 164 | 340 | 1.20e-32 | 120 |
| Msa1057920 | MtrunA17_Chr5g0432251 | 34.171 | 199 | 125 | 4 | 4 | 197 | 161 | 358 | 1.80e-32 | 119 |
| Msa1057920 | MtrunA17_Chr5g0432301 | 33.831 | 201 | 127 | 4 | 2 | 197 | 160 | 359 | 3.11e-32 | 119 |
| Msa1057920 | MtrunA17_Chr7g0223231 | 33.166 | 199 | 129 | 2 | 1 | 196 | 151 | 348 | 1.91e-31 | 117 |
| Msa1057920 | MtrunA17_Chr7g0219141 | 37.766 | 188 | 115 | 2 | 4 | 190 | 162 | 348 | 2.38e-31 | 116 |
| Msa1057920 | MtrunA17_Chr4g0046531 | 34.010 | 197 | 126 | 2 | 4 | 197 | 522 | 717 | 4.36e-31 | 119 |
| Msa1057920 | MtrunA17_Chr4g0046531 | 34.010 | 197 | 126 | 2 | 4 | 197 | 160 | 355 | 2.11e-29 | 114 |
| Msa1057920 | MtrunA17_Chr5g0432211 | 32.020 | 203 | 130 | 4 | 1 | 197 | 144 | 344 | 1.24e-30 | 114 |
| Msa1057920 | MtrunA17_Chr5g0432261 | 35.260 | 173 | 108 | 2 | 28 | 197 | 155 | 326 | 1.07e-29 | 111 |
| Msa1057920 | MtrunA17_Chr4g0014641 | 41.290 | 155 | 88 | 1 | 10 | 161 | 173 | 327 | 5.58e-29 | 110 |
| Msa1057920 | MtrunA17_Chr1g0170941 | 61.842 | 76 | 29 | 0 | 23 | 98 | 1 | 76 | 1.09e-28 | 102 |
| Msa1057920 | MtrunA17_Chr4g0014561 | 40.645 | 155 | 89 | 1 | 10 | 161 | 173 | 327 | 1.33e-28 | 109 |
| Msa1057920 | MtrunA17_Chr4g0046361 | 35.028 | 177 | 111 | 2 | 10 | 183 | 171 | 346 | 7.06e-28 | 107 |
| Msa1057920 | MtrunA17_Chr4g0014681 | 40.000 | 155 | 90 | 1 | 10 | 161 | 173 | 327 | 8.65e-28 | 107 |
| Msa1057920 | MtrunA17_Chr4g0046341 | 36.158 | 177 | 109 | 2 | 10 | 183 | 174 | 349 | 1.72e-24 | 98.6 |
| Msa1057920 | MtrunA17_Chr4g0014661 | 38.393 | 112 | 69 | 0 | 10 | 121 | 167 | 278 | 2.46e-23 | 95.1 |
| Msa1057920 | MtrunA17_Chr8g0367421 | 49.000 | 100 | 34 | 1 | 1 | 100 | 11 | 93 | 3.03e-23 | 90.1 |
| Msa1057920 | MtrunA17_Chr4g0014591 | 34.194 | 155 | 99 | 1 | 10 | 161 | 167 | 321 | 1.12e-21 | 90.9 |
| Msa1057920 | MtrunA17_Chr7g0219171 | 36.667 | 120 | 71 | 2 | 68 | 184 | 117 | 234 | 9.00e-20 | 84.0 |
| Msa1057920 | MtrunA17_Chr8g0367471 | 52.857 | 70 | 33 | 0 | 19 | 88 | 5 | 74 | 1.17e-19 | 79.7 |
| Msa1057920 | MtrunA17_Chr4g0014601 | 35.106 | 94 | 61 | 0 | 10 | 103 | 167 | 260 | 1.10e-12 | 65.1 |
| Msa1057920 | MtrunA17_Chr1g0170951 | 44.776 | 67 | 36 | 1 | 112 | 178 | 20 | 85 | 5.51e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1057920 | AT5G54160.1 | 52.551 | 196 | 93 | 0 | 3 | 198 | 166 | 361 | 1.34e-70 | 219 |
| Msa1057920 | AT1G77520.1 | 48.187 | 193 | 99 | 1 | 7 | 198 | 189 | 381 | 8.33e-59 | 189 |
| Msa1057920 | AT1G51990.1 | 43.939 | 198 | 110 | 1 | 1 | 197 | 164 | 361 | 1.05e-58 | 188 |
| Msa1057920 | AT1G51990.2 | 43.939 | 198 | 110 | 1 | 1 | 197 | 164 | 361 | 1.06e-58 | 188 |
| Msa1057920 | AT1G62900.1 | 48.864 | 176 | 89 | 1 | 4 | 178 | 10 | 185 | 5.84e-54 | 171 |
| Msa1057920 | AT1G77530.1 | 50.000 | 202 | 94 | 4 | 1 | 198 | 183 | 381 | 1.01e-53 | 176 |
| Msa1057920 | AT1G33030.1 | 42.714 | 199 | 107 | 4 | 4 | 198 | 155 | 350 | 3.76e-53 | 174 |
| Msa1057920 | AT5G37170.2 | 44.444 | 198 | 108 | 2 | 3 | 198 | 37 | 234 | 1.62e-52 | 168 |
| Msa1057920 | AT1G63140.2 | 48.108 | 185 | 90 | 2 | 4 | 187 | 186 | 365 | 1.65e-52 | 172 |
| Msa1057920 | AT1G63140.4 | 48.108 | 185 | 90 | 2 | 4 | 187 | 206 | 385 | 2.18e-52 | 173 |
| Msa1057920 | AT5G37170.1 | 45.128 | 195 | 105 | 2 | 6 | 198 | 140 | 334 | 1.41e-51 | 169 |
| Msa1057920 | AT5G37170.3 | 44.624 | 186 | 101 | 2 | 15 | 198 | 1 | 186 | 3.85e-49 | 158 |
| Msa1057920 | AT5G53810.1 | 44.724 | 199 | 109 | 1 | 1 | 198 | 180 | 378 | 1.32e-48 | 162 |
| Msa1057920 | AT3G53140.1 | 41.954 | 174 | 99 | 2 | 7 | 178 | 166 | 339 | 1.20e-46 | 157 |
| Msa1057920 | AT1G76790.1 | 43.216 | 199 | 110 | 2 | 1 | 198 | 169 | 365 | 2.25e-44 | 151 |
| Msa1057920 | AT1G21100.1 | 43.216 | 199 | 110 | 2 | 1 | 198 | 177 | 373 | 2.84e-44 | 151 |
| Msa1057920 | AT1G21130.1 | 43.719 | 199 | 109 | 2 | 1 | 198 | 177 | 373 | 3.95e-44 | 150 |
| Msa1057920 | AT1G21110.1 | 43.719 | 199 | 109 | 2 | 1 | 198 | 177 | 373 | 4.34e-44 | 150 |
| Msa1057920 | AT1G21120.1 | 43.216 | 199 | 110 | 2 | 1 | 198 | 177 | 373 | 2.79e-43 | 149 |
| Msa1057920 | AT1G21120.2 | 43.216 | 199 | 110 | 2 | 1 | 198 | 225 | 421 | 1.12e-42 | 148 |
| Msa1057920 | AT4G35150.1 | 41.040 | 173 | 91 | 4 | 8 | 170 | 125 | 296 | 7.15e-38 | 133 |
| Msa1057920 | AT4G35160.1 | 41.477 | 176 | 94 | 3 | 4 | 170 | 178 | 353 | 5.28e-35 | 127 |
| Msa1057920 | AT1G63140.1 | 54.639 | 97 | 44 | 0 | 4 | 100 | 206 | 302 | 2.85e-28 | 108 |
| Msa1057920 | AT1G33030.2 | 45.918 | 98 | 52 | 1 | 4 | 100 | 155 | 252 | 1.73e-23 | 94.4 |
| Msa1057920 | AT1G33030.3 | 45.918 | 98 | 52 | 1 | 4 | 100 | 155 | 252 | 2.61e-23 | 94.4 |
| Msa1057920 | AT1G21130.2 | 46.000 | 100 | 52 | 1 | 1 | 100 | 177 | 274 | 1.61e-16 | 76.3 |
| Msa1057920 | AT1G63140.3 | 53.521 | 71 | 33 | 0 | 4 | 74 | 206 | 276 | 3.55e-16 | 75.1 |
| Msa1057920 | AT1G77530.2 | 51.899 | 79 | 38 | 0 | 1 | 79 | 183 | 261 | 8.84e-16 | 73.9 |
Find 39 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCAATAACTTTGCCATCAT+TGG | 0.228961 | 7_2:-41019548 | None:intergenic |
| TCGGTTGTTTCTCTGGCAAT+TGG | 0.286855 | 7_2:+41019734 | Msa1057920:CDS |
| GAAAATGCTCAAACCTATTC+AGG | 0.294153 | 7_2:+41019169 | Msa1057920:CDS |
| TTTCTCTGGCAATTGGGTTA+TGG | 0.305268 | 7_2:+41019741 | Msa1057920:CDS |
| TCAAAATGAATTTATAGAAT+TGG | 0.318402 | 7_2:+41019678 | Msa1057920:CDS |
| AAATTCATCGGTTGTTTCTC+TGG | 0.342246 | 7_2:+41019727 | Msa1057920:CDS |
| AAGAACTCTCTTCATGATAA+TGG | 0.347670 | 7_2:-41019014 | None:intergenic |
| TTCAGTGGATACTTCACAAT+TGG | 0.358152 | 7_2:+41019476 | Msa1057920:intron |
| AAAGTATAATATACCTGAAT+AGG | 0.369202 | 7_2:-41019182 | None:intergenic |
| TGATGGCAAAGTTATTGCTT+TGG | 0.371752 | 7_2:+41019552 | Msa1057920:CDS |
| GAATTTATAGAATTGGCATT+AGG | 0.380239 | 7_2:+41019685 | Msa1057920:CDS |
| ATTGTATTCTCTGGCAAAAC+AGG | 0.383773 | 7_2:-41019586 | None:intergenic |
| GTGGATGTTGGTGGTGGTCT+TGG | 0.392278 | 7_2:+41019073 | Msa1057920:CDS |
| CGGTTGTTTCTCTGGCAATT+GGG | 0.406930 | 7_2:+41019735 | Msa1057920:CDS |
| TTGGAAATCATTGTATTCTC+TGG | 0.412295 | 7_2:-41019595 | None:intergenic |
| ATAGAATTGGCATTAGGATC+TGG | 0.442605 | 7_2:+41019691 | Msa1057920:CDS |
| GCAATAACTTTGCCATCATT+GGG | 0.468216 | 7_2:-41019547 | None:intergenic |
| TTCCAAGCTTGGTTCTAAAG+AGG | 0.478752 | 7_2:+41019612 | Msa1057920:CDS |
| AGTATGCAGGTGTGAATCCC+AGG | 0.481568 | 7_2:+41018951 | Msa1057920:intron |
| AATACAATGATTTCCAAGCT+TGG | 0.485049 | 7_2:+41019601 | Msa1057920:CDS |
| GTCCTCTTTAGAACCAAGCT+TGG | 0.498922 | 7_2:-41019614 | None:intergenic |
| ATTGAAAATATCATTGAACC+TGG | 0.505485 | 7_2:-41018969 | None:intergenic |
| TGAGCACATCAACACAATAG+TGG | 0.527639 | 7_2:+41019054 | Msa1057920:CDS |
| AGAGTTCTTGAATGCTACAA+AGG | 0.554514 | 7_2:+41019028 | Msa1057920:CDS |
| TATAAAGCTACTCCCAATGA+TGG | 0.555558 | 7_2:+41019535 | Msa1057920:CDS |
| ATGTTTGAGAGTGTTCCTAA+AGG | 0.578784 | 7_2:+41019333 | Msa1057920:CDS |
| TTGAAAATATCATTGAACCT+GGG | 0.582063 | 7_2:-41018968 | None:intergenic |
| GCATTAGGATCTGGATGTAG+TGG | 0.585634 | 7_2:+41019700 | Msa1057920:CDS |
| TGTAGTGGCATCAAATTCAT+CGG | 0.606769 | 7_2:+41019715 | Msa1057920:CDS |
| ATCAACACAATAGTGGATGT+TGG | 0.607990 | 7_2:+41019061 | Msa1057920:CDS |
| TCAAAACATTCTCATATACA+TGG | 0.615988 | 7_2:+41019118 | Msa1057920:CDS |
| ATGATGACTCTACAAGGAGG+AGG | 0.617647 | 7_2:+41019643 | Msa1057920:CDS |
| TTCTACATGATGACTCTACA+AGG | 0.622076 | 7_2:+41019637 | Msa1057920:CDS |
| GTAGGTATCACACATGTGGA+AGG | 0.627781 | 7_2:+41019306 | Msa1057920:intron |
| AACTCTCTTCATGATAATGG+TGG | 0.630189 | 7_2:-41019011 | None:intergenic |
| TGTTGTAGGTATCACACATG+TGG | 0.637801 | 7_2:+41019302 | Msa1057920:intron |
| ACAATAGTGGATGTTGGTGG+TGG | 0.665332 | 7_2:+41019067 | Msa1057920:CDS |
| AACACAATAGTGGATGTTGG+TGG | 0.686669 | 7_2:+41019064 | Msa1057920:CDS |
| TACATGATGACTCTACAAGG+AGG | 0.759954 | 7_2:+41019640 | Msa1057920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAATGAATTTATAGAAT+TGG | + | chr7_2:41019678-41019697 | Msa1057920:CDS | 15.0% |
| !! | TCAAAATGAATTTATAGAAT+TGG | + | chr7_2:41019678-41019697 | Msa1057920:CDS | 15.0% |
| !!! | TGATATTTTCAATAAAGCTA+TGG | + | chr7_2:41018979-41018998 | Msa1057920:CDS | 20.0% |
| !!! | GATATTTTCAATAAAGCTAT+GGG | + | chr7_2:41018980-41018999 | Msa1057920:CDS | 20.0% |
| !! | AAAGTATAATATACCTGAAT+AGG | - | chr7_2:41019185-41019204 | None:intergenic | 20.0% |
| !!! | AATATAATTCATGCATTTTC+AGG | + | chr7_2:41019378-41019397 | Msa1057920:intron | 20.0% |
| !! | TGCAATATGATTTATTAATG+AGG | + | chr7_2:41019429-41019448 | Msa1057920:intron | 20.0% |
| !!! | TGATATTTTCAATAAAGCTA+TGG | + | chr7_2:41018979-41018998 | Msa1057920:CDS | 20.0% |
| !!! | GATATTTTCAATAAAGCTAT+GGG | + | chr7_2:41018980-41018999 | Msa1057920:CDS | 20.0% |
| !! | AAAGTATAATATACCTGAAT+AGG | - | chr7_2:41019185-41019204 | None:intergenic | 20.0% |
| !!! | AATATAATTCATGCATTTTC+AGG | + | chr7_2:41019378-41019397 | Msa1057920:intron | 20.0% |
| !! | TGCAATATGATTTATTAATG+AGG | + | chr7_2:41019429-41019448 | Msa1057920:intron | 20.0% |
| ! | TTGAAAATATCATTGAACCT+GGG | - | chr7_2:41018971-41018990 | None:intergenic | 25.0% |
| ! | ATTGAAAATATCATTGAACC+TGG | - | chr7_2:41018972-41018991 | None:intergenic | 25.0% |
| ! | TCAAAACATTCTCATATACA+TGG | + | chr7_2:41019118-41019137 | Msa1057920:CDS | 25.0% |
| ! | CCACACATAATAAATATCAT+TGG | - | chr7_2:41019253-41019272 | None:intergenic | 25.0% |
| ! | CCAATGATATTTATTATGTG+TGG | + | chr7_2:41019250-41019269 | Msa1057920:intron | 25.0% |
| !!! | AAGCTACGAATAATTTGTTA+AGG | + | chr7_2:41019273-41019292 | Msa1057920:intron | 25.0% |
| ! | TGTTAAGGTAATAATGTTGT+AGG | + | chr7_2:41019288-41019307 | Msa1057920:intron | 25.0% |
| ! | TATATTCACCTTCAGAAAAA+TGG | - | chr7_2:41019364-41019383 | None:intergenic | 25.0% |
| !! | TTTTCAACAACTTCAAACAA+CGG | - | chr7_2:41019510-41019529 | None:intergenic | 25.0% |
| ! | GAATTTATAGAATTGGCATT+AGG | + | chr7_2:41019685-41019704 | Msa1057920:CDS | 25.0% |
| ! | TTGAAAATATCATTGAACCT+GGG | - | chr7_2:41018971-41018990 | None:intergenic | 25.0% |
| ! | ATTGAAAATATCATTGAACC+TGG | - | chr7_2:41018972-41018991 | None:intergenic | 25.0% |
| ! | TCAAAACATTCTCATATACA+TGG | + | chr7_2:41019118-41019137 | Msa1057920:CDS | 25.0% |
| ! | CCACACATAATAAATATCAT+TGG | - | chr7_2:41019253-41019272 | None:intergenic | 25.0% |
| ! | CCAATGATATTTATTATGTG+TGG | + | chr7_2:41019250-41019269 | Msa1057920:intron | 25.0% |
| !!! | AAGCTACGAATAATTTGTTA+AGG | + | chr7_2:41019273-41019292 | Msa1057920:intron | 25.0% |
| ! | TGTTAAGGTAATAATGTTGT+AGG | + | chr7_2:41019288-41019307 | Msa1057920:intron | 25.0% |
| ! | TATATTCACCTTCAGAAAAA+TGG | - | chr7_2:41019364-41019383 | None:intergenic | 25.0% |
| !! | TTTTCAACAACTTCAAACAA+CGG | - | chr7_2:41019510-41019529 | None:intergenic | 25.0% |
| ! | GAATTTATAGAATTGGCATT+AGG | + | chr7_2:41019685-41019704 | Msa1057920:CDS | 25.0% |
| AAGAACTCTCTTCATGATAA+TGG | - | chr7_2:41019017-41019036 | None:intergenic | 30.0% | |
| TTGGAAATCATTGTATTCTC+TGG | - | chr7_2:41019598-41019617 | None:intergenic | 30.0% | |
| AATACAATGATTTCCAAGCT+TGG | + | chr7_2:41019601-41019620 | Msa1057920:CDS | 30.0% | |
| AAGAACTCTCTTCATGATAA+TGG | - | chr7_2:41019017-41019036 | None:intergenic | 30.0% | |
| TTGGAAATCATTGTATTCTC+TGG | - | chr7_2:41019598-41019617 | None:intergenic | 30.0% | |
| AATACAATGATTTCCAAGCT+TGG | + | chr7_2:41019601-41019620 | Msa1057920:CDS | 30.0% | |
| !! | AACTCTCTTCATGATAATGG+TGG | - | chr7_2:41019014-41019033 | None:intergenic | 35.0% |
| AGAGTTCTTGAATGCTACAA+AGG | + | chr7_2:41019028-41019047 | Msa1057920:CDS | 35.0% | |
| !! | ATCAACACAATAGTGGATGT+TGG | + | chr7_2:41019061-41019080 | Msa1057920:CDS | 35.0% |
| ! | TGAGCATTTTCTATGACATG+AGG | - | chr7_2:41019160-41019179 | None:intergenic | 35.0% |
| GAAAATGCTCAAACCTATTC+AGG | + | chr7_2:41019169-41019188 | Msa1057920:CDS | 35.0% | |
| !! | ATGTTTGAGAGTGTTCCTAA+AGG | + | chr7_2:41019333-41019352 | Msa1057920:CDS | 35.0% |
| AGAAAAATGGCATCTCCTTT+AGG | - | chr7_2:41019351-41019370 | None:intergenic | 35.0% | |
| ! | TTTTGTGCCAAAACTTTCAG+TGG | + | chr7_2:41019461-41019480 | Msa1057920:intron | 35.0% |
| !! | GAAGTATCCACTGAAAGTTT+TGG | - | chr7_2:41019471-41019490 | None:intergenic | 35.0% |
| TTCAGTGGATACTTCACAAT+TGG | + | chr7_2:41019476-41019495 | Msa1057920:intron | 35.0% | |
| TATAAAGCTACTCCCAATGA+TGG | + | chr7_2:41019535-41019554 | Msa1057920:CDS | 35.0% | |
| GCAATAACTTTGCCATCATT+GGG | - | chr7_2:41019550-41019569 | None:intergenic | 35.0% | |
| AGCAATAACTTTGCCATCAT+TGG | - | chr7_2:41019551-41019570 | None:intergenic | 35.0% | |
| TGATGGCAAAGTTATTGCTT+TGG | + | chr7_2:41019552-41019571 | Msa1057920:CDS | 35.0% | |
| ATTGTATTCTCTGGCAAAAC+AGG | - | chr7_2:41019589-41019608 | None:intergenic | 35.0% | |
| TTCTACATGATGACTCTACA+AGG | + | chr7_2:41019637-41019656 | Msa1057920:CDS | 35.0% | |
| ATAGAATTGGCATTAGGATC+TGG | + | chr7_2:41019691-41019710 | Msa1057920:CDS | 35.0% | |
| TGTAGTGGCATCAAATTCAT+CGG | + | chr7_2:41019715-41019734 | Msa1057920:CDS | 35.0% | |
| !! | AAATTCATCGGTTGTTTCTC+TGG | + | chr7_2:41019727-41019746 | Msa1057920:CDS | 35.0% |
| !! | AACTCTCTTCATGATAATGG+TGG | - | chr7_2:41019014-41019033 | None:intergenic | 35.0% |
| AGAGTTCTTGAATGCTACAA+AGG | + | chr7_2:41019028-41019047 | Msa1057920:CDS | 35.0% | |
| !! | ATCAACACAATAGTGGATGT+TGG | + | chr7_2:41019061-41019080 | Msa1057920:CDS | 35.0% |
| ! | TGAGCATTTTCTATGACATG+AGG | - | chr7_2:41019160-41019179 | None:intergenic | 35.0% |
| GAAAATGCTCAAACCTATTC+AGG | + | chr7_2:41019169-41019188 | Msa1057920:CDS | 35.0% | |
| !! | ATGTTTGAGAGTGTTCCTAA+AGG | + | chr7_2:41019333-41019352 | Msa1057920:CDS | 35.0% |
| AGAAAAATGGCATCTCCTTT+AGG | - | chr7_2:41019351-41019370 | None:intergenic | 35.0% | |
| ! | TTTTGTGCCAAAACTTTCAG+TGG | + | chr7_2:41019461-41019480 | Msa1057920:intron | 35.0% |
| !! | GAAGTATCCACTGAAAGTTT+TGG | - | chr7_2:41019471-41019490 | None:intergenic | 35.0% |
| TTCAGTGGATACTTCACAAT+TGG | + | chr7_2:41019476-41019495 | Msa1057920:intron | 35.0% | |
| TATAAAGCTACTCCCAATGA+TGG | + | chr7_2:41019535-41019554 | Msa1057920:CDS | 35.0% | |
| GCAATAACTTTGCCATCATT+GGG | - | chr7_2:41019550-41019569 | None:intergenic | 35.0% | |
| AGCAATAACTTTGCCATCAT+TGG | - | chr7_2:41019551-41019570 | None:intergenic | 35.0% | |
| TGATGGCAAAGTTATTGCTT+TGG | + | chr7_2:41019552-41019571 | Msa1057920:CDS | 35.0% | |
| ATTGTATTCTCTGGCAAAAC+AGG | - | chr7_2:41019589-41019608 | None:intergenic | 35.0% | |
| TTCTACATGATGACTCTACA+AGG | + | chr7_2:41019637-41019656 | Msa1057920:CDS | 35.0% | |
| ATAGAATTGGCATTAGGATC+TGG | + | chr7_2:41019691-41019710 | Msa1057920:CDS | 35.0% | |
| TGTAGTGGCATCAAATTCAT+CGG | + | chr7_2:41019715-41019734 | Msa1057920:CDS | 35.0% | |
| !! | AAATTCATCGGTTGTTTCTC+TGG | + | chr7_2:41019727-41019746 | Msa1057920:CDS | 35.0% |
| TGAGCACATCAACACAATAG+TGG | + | chr7_2:41019054-41019073 | Msa1057920:CDS | 40.0% | |
| !! | AACACAATAGTGGATGTTGG+TGG | + | chr7_2:41019064-41019083 | Msa1057920:CDS | 40.0% |
| TGTTGTAGGTATCACACATG+TGG | + | chr7_2:41019302-41019321 | Msa1057920:intron | 40.0% | |
| !!! | AGGAGATGCCATTTTTCTGA+AGG | + | chr7_2:41019353-41019372 | Msa1057920:CDS | 40.0% |
| !! | TTCCAAGCTTGGTTCTAAAG+AGG | + | chr7_2:41019612-41019631 | Msa1057920:CDS | 40.0% |
| TACATGATGACTCTACAAGG+AGG | + | chr7_2:41019640-41019659 | Msa1057920:CDS | 40.0% | |
| TTTCTCTGGCAATTGGGTTA+TGG | + | chr7_2:41019741-41019760 | Msa1057920:CDS | 40.0% | |
| TGAGCACATCAACACAATAG+TGG | + | chr7_2:41019054-41019073 | Msa1057920:CDS | 40.0% | |
| !! | AACACAATAGTGGATGTTGG+TGG | + | chr7_2:41019064-41019083 | Msa1057920:CDS | 40.0% |
| TGTTGTAGGTATCACACATG+TGG | + | chr7_2:41019302-41019321 | Msa1057920:intron | 40.0% | |
| !!! | AGGAGATGCCATTTTTCTGA+AGG | + | chr7_2:41019353-41019372 | Msa1057920:CDS | 40.0% |
| !! | TTCCAAGCTTGGTTCTAAAG+AGG | + | chr7_2:41019612-41019631 | Msa1057920:CDS | 40.0% |
| TACATGATGACTCTACAAGG+AGG | + | chr7_2:41019640-41019659 | Msa1057920:CDS | 40.0% | |
| TTTCTCTGGCAATTGGGTTA+TGG | + | chr7_2:41019741-41019760 | Msa1057920:CDS | 40.0% | |
| !! | ACAATAGTGGATGTTGGTGG+TGG | + | chr7_2:41019067-41019086 | Msa1057920:CDS | 45.0% |
| GTAGGTATCACACATGTGGA+AGG | + | chr7_2:41019306-41019325 | Msa1057920:intron | 45.0% | |
| !! | GTCCTCTTTAGAACCAAGCT+TGG | - | chr7_2:41019617-41019636 | None:intergenic | 45.0% |
| ATGATGACTCTACAAGGAGG+AGG | + | chr7_2:41019643-41019662 | Msa1057920:CDS | 45.0% | |
| GCATTAGGATCTGGATGTAG+TGG | + | chr7_2:41019700-41019719 | Msa1057920:CDS | 45.0% | |
| !! | TCGGTTGTTTCTCTGGCAAT+TGG | + | chr7_2:41019734-41019753 | Msa1057920:CDS | 45.0% |
| !! | CGGTTGTTTCTCTGGCAATT+GGG | + | chr7_2:41019735-41019754 | Msa1057920:CDS | 45.0% |
| !! | ACAATAGTGGATGTTGGTGG+TGG | + | chr7_2:41019067-41019086 | Msa1057920:CDS | 45.0% |
| GTAGGTATCACACATGTGGA+AGG | + | chr7_2:41019306-41019325 | Msa1057920:intron | 45.0% | |
| !! | GTCCTCTTTAGAACCAAGCT+TGG | - | chr7_2:41019617-41019636 | None:intergenic | 45.0% |
| ATGATGACTCTACAAGGAGG+AGG | + | chr7_2:41019643-41019662 | Msa1057920:CDS | 45.0% | |
| GCATTAGGATCTGGATGTAG+TGG | + | chr7_2:41019700-41019719 | Msa1057920:CDS | 45.0% | |
| !! | TCGGTTGTTTCTCTGGCAAT+TGG | + | chr7_2:41019734-41019753 | Msa1057920:CDS | 45.0% |
| !! | CGGTTGTTTCTCTGGCAATT+GGG | + | chr7_2:41019735-41019754 | Msa1057920:CDS | 45.0% |
| AGTATGCAGGTGTGAATCCC+AGG | + | chr7_2:41018951-41018970 | Msa1057920:intron | 50.0% | |
| AGTATGCAGGTGTGAATCCC+AGG | + | chr7_2:41018951-41018970 | Msa1057920:intron | 50.0% | |
| !! | GTGGATGTTGGTGGTGGTCT+TGG | + | chr7_2:41019073-41019092 | Msa1057920:CDS | 55.0% |
| !! | GTGGATGTTGGTGGTGGTCT+TGG | + | chr7_2:41019073-41019092 | Msa1057920:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 41018948 | 41019777 | 41018948 | ID=Msa1057920;Name=Msa1057920 |
| chr7_2 | mRNA | 41018948 | 41019777 | 41018948 | ID=Msa1057920-mRNA-1;Parent=Msa1057920;Name=Msa1057920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0|0|1|0.66|0.5|4|0|198 |
| chr7_2 | exon | 41018948 | 41018951 | 41018948 | ID=Msa1057920-mRNA-1:exon:7494;Parent=Msa1057920-mRNA-1 |
| chr7_2 | exon | 41018960 | 41019190 | 41018960 | ID=Msa1057920-mRNA-1:exon:7495;Parent=Msa1057920-mRNA-1 |
| chr7_2 | exon | 41019310 | 41019374 | 41019310 | ID=Msa1057920-mRNA-1:exon:7496;Parent=Msa1057920-mRNA-1 |
| chr7_2 | exon | 41019481 | 41019777 | 41019481 | ID=Msa1057920-mRNA-1:exon:7497;Parent=Msa1057920-mRNA-1 |
| chr7_2 | CDS | 41018948 | 41018951 | 41018948 | ID=Msa1057920-mRNA-1:cds;Parent=Msa1057920-mRNA-1 |
| chr7_2 | CDS | 41018960 | 41019190 | 41018960 | ID=Msa1057920-mRNA-1:cds;Parent=Msa1057920-mRNA-1 |
| chr7_2 | CDS | 41019310 | 41019374 | 41019310 | ID=Msa1057920-mRNA-1:cds;Parent=Msa1057920-mRNA-1 |
| chr7_2 | CDS | 41019481 | 41019777 | 41019481 | ID=Msa1057920-mRNA-1:cds;Parent=Msa1057920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
