Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369430 | KEH20146.1 | 90.435 | 115 | 8 | 1 | 1 | 112 | 21 | 135 | 2.34e-44 | 157 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369430 | A0A072TSG0 | 90.435 | 115 | 8 | 1 | 1 | 112 | 21 | 135 | 1.12e-44 | 157 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014330 | Msa1369430 | 0.805815 | 1.112524e-49 | -8.615850e-47 |
| Msa0016570 | Msa1369430 | 0.802444 | 5.593101e-49 | -8.615850e-47 |
| Msa0102070 | Msa1369430 | 0.841159 | 5.627020e-58 | -8.615850e-47 |
| Msa1369430 | Msa1386330 | 0.816816 | 4.551145e-52 | -8.615850e-47 |
| Msa1369430 | Msa1397580 | 0.801680 | 8.031580e-49 | -8.615850e-47 |
| Msa1369430 | Msa1402790 | 0.821617 | 3.671321e-53 | -8.615850e-47 |
| Msa1369430 | Msa1404000 | 0.847258 | 1.295781e-59 | -8.615850e-47 |
| Msa1369430 | Msa1408780 | 0.805386 | 1.369120e-49 | -8.615850e-47 |
| Msa1369430 | Msa1415310 | 0.838869 | 2.225360e-57 | -8.615850e-47 |
| Msa1369430 | Msa1422180 | 0.816469 | 5.442399e-52 | -8.615850e-47 |
| Msa1369430 | Msa1433120 | 0.818728 | 1.684473e-52 | -8.615850e-47 |
| Msa0636170 | Msa1369430 | 0.823925 | 1.065374e-53 | -8.615850e-47 |
| Msa0639610 | Msa1369430 | 0.835647 | 1.485554e-56 | -8.615850e-47 |
| Msa0701010 | Msa1369430 | 0.805714 | 1.168445e-49 | -8.615850e-47 |
| Msa0725850 | Msa1369430 | 0.819175 | 1.333223e-52 | -8.615850e-47 |
| Msa0726140 | Msa1369430 | 0.849282 | 3.573731e-60 | -8.615850e-47 |
| Msa0729800 | Msa1369430 | 0.819236 | 1.291574e-52 | -8.615850e-47 |
| Msa0733290 | Msa1369430 | 0.816859 | 4.451016e-52 | -8.615850e-47 |
| Msa0743810 | Msa1369430 | 0.864494 | 1.167879e-64 | -8.615850e-47 |
| Msa0745060 | Msa1369430 | 0.837327 | 5.549539e-57 | -8.615850e-47 |
| Msa0767720 | Msa1369430 | 0.816524 | 5.289367e-52 | -8.615850e-47 |
| Msa0768290 | Msa1369430 | 0.812346 | 4.441001e-51 | -8.615850e-47 |
| Msa0768370 | Msa1369430 | 0.819899 | 9.112748e-53 | -8.615850e-47 |
| Msa0783160 | Msa1369430 | 0.842632 | 2.296330e-58 | -8.615850e-47 |
| Msa0784290 | Msa1369430 | 0.817006 | 4.125460e-52 | -8.615850e-47 |
| Msa0784300 | Msa1369430 | 0.811884 | 5.598419e-51 | -8.615850e-47 |
| Msa0787600 | Msa1369430 | 0.810456 | 1.142597e-50 | -8.615850e-47 |
| Msa0808010 | Msa1369430 | 0.822523 | 2.263893e-53 | -8.615850e-47 |
| Msa0808020 | Msa1369430 | 0.815741 | 7.915530e-52 | -8.615850e-47 |
| Msa0811270 | Msa1369430 | 0.824555 | 7.573646e-54 | -8.615850e-47 |
| Msa0824590 | Msa1369430 | 0.803474 | 3.427305e-49 | -8.615850e-47 |
| Msa0824600 | Msa1369430 | 0.827027 | 1.962426e-54 | -8.615850e-47 |
| Msa0825860 | Msa1369430 | 0.847131 | 1.404091e-59 | -8.615850e-47 |
| Msa0833290 | Msa1369430 | 0.822726 | 2.029877e-53 | -8.615850e-47 |
| Msa0123810 | Msa1369430 | 0.822074 | 2.878067e-53 | -8.615850e-47 |
| Msa0145750 | Msa1369430 | 0.813639 | 2.311818e-51 | -8.615850e-47 |
| Msa0153910 | Msa1369430 | 0.808662 | 2.773545e-50 | -8.615850e-47 |
| Msa0227480 | Msa1369430 | 0.832757 | 7.877632e-56 | -8.615850e-47 |
| Msa0231000 | Msa1369430 | 0.815549 | 8.733521e-52 | -8.615850e-47 |
| Msa0232850 | Msa1369430 | 0.866031 | 3.836904e-65 | -8.615850e-47 |
| Msa0235140 | Msa1369430 | 0.828120 | 1.072459e-54 | -8.615850e-47 |
| Msa1246880 | Msa1369430 | 0.813930 | 1.994713e-51 | -8.615850e-47 |
| Msa1269670 | Msa1369430 | 0.848947 | 4.428538e-60 | -8.615850e-47 |
| Msa1270230 | Msa1369430 | 0.839308 | 1.712986e-57 | -8.615850e-47 |
| Msa1270240 | Msa1369430 | 0.828326 | 9.568289e-55 | -8.615850e-47 |
| Msa1270270 | Msa1369430 | 0.835251 | 1.871118e-56 | -8.615850e-47 |
| Msa1273230 | Msa1369430 | 0.802602 | 5.189270e-49 | -8.615850e-47 |
| Msa1283330 | Msa1369430 | 0.844953 | 5.493317e-59 | -8.615850e-47 |
| Msa1284680 | Msa1369430 | 0.812054 | 5.140867e-51 | -8.615850e-47 |
| Msa1285930 | Msa1369430 | 0.865073 | 7.689264e-65 | -8.615850e-47 |
| Msa1287800 | Msa1369430 | 0.845257 | 4.546642e-59 | -8.615850e-47 |
| Msa1287810 | Msa1369430 | 0.861581 | 9.280517e-64 | -8.615850e-47 |
| Msa1287830 | Msa1369430 | 0.802367 | 5.801768e-49 | -8.615850e-47 |
| Msa1289420 | Msa1369430 | 0.816762 | 4.677764e-52 | -8.615850e-47 |
| Msa1289430 | Msa1369430 | 0.846310 | 2.353834e-59 | -8.615850e-47 |
| Msa1297210 | Msa1369430 | 0.816831 | 4.514620e-52 | -8.615850e-47 |
| Msa1310120 | Msa1369430 | 0.806961 | 6.379528e-50 | -8.615850e-47 |
| Msa1320300 | Msa1369430 | 0.813034 | 3.138915e-51 | -8.615850e-47 |
| Msa1340590 | Msa1369430 | 0.807277 | 5.466944e-50 | -8.615850e-47 |
| Msa1342200 | Msa1369430 | 0.814756 | 1.310368e-51 | -8.615850e-47 |
| Msa0365500 | Msa1369430 | 0.823474 | 1.358277e-53 | -8.615850e-47 |
| Msa0384800 | Msa1369430 | 0.856562 | 2.957410e-62 | -8.615850e-47 |
| Msa0406120 | Msa1369430 | 0.802608 | 5.175151e-49 | -8.615850e-47 |
| Msa0414410 | Msa1369430 | 0.829441 | 5.138407e-55 | -8.615850e-47 |
| Msa0414420 | Msa1369430 | 0.850563 | 1.566590e-60 | -8.615850e-47 |
| Msa0424320 | Msa1369430 | 0.801549 | 8.545089e-49 | -8.615850e-47 |
| Msa0436780 | Msa1369430 | 0.810458 | 1.141376e-50 | -8.615850e-47 |
| Msa0438620 | Msa1369430 | 0.808847 | 2.532196e-50 | -8.615850e-47 |
| Msa0444130 | Msa1369430 | 0.805124 | 1.553501e-49 | -8.615850e-47 |
| Msa0450000 | Msa1369430 | 0.867018 | 1.863645e-65 | -8.615850e-47 |
| Msa0451730 | Msa1369430 | 0.807895 | 4.042675e-50 | -8.615850e-47 |
| Msa0452900 | Msa1369430 | 0.868023 | 8.885083e-66 | -8.615850e-47 |
| Msa0453120 | Msa1369430 | 0.841464 | 4.677744e-58 | -8.615850e-47 |
| Msa0459170 | Msa1369430 | 0.815475 | 9.070097e-52 | -8.615850e-47 |
| Msa0479340 | Msa1369430 | 0.812797 | 3.538816e-51 | -8.615850e-47 |
| Msa0981370 | Msa1369430 | 0.803770 | 2.974593e-49 | -8.615850e-47 |
| Msa0986360 | Msa1369430 | 0.815428 | 9.291707e-52 | -8.615850e-47 |
| Msa0989060 | Msa1369430 | 0.862220 | 5.913519e-64 | -8.615850e-47 |
| Msa0998690 | Msa1369430 | 0.831906 | 1.279789e-55 | -8.615850e-47 |
| Msa1000900 | Msa1369430 | 0.811906 | 5.537076e-51 | -8.615850e-47 |
| Msa1014540 | Msa1369430 | 0.813667 | 2.278976e-51 | -8.615850e-47 |
| Msa1016280 | Msa1369430 | 0.845945 | 2.958186e-59 | -8.615850e-47 |
| Msa1024240 | Msa1369430 | 0.813532 | 2.440116e-51 | -8.615850e-47 |
| Msa1025360 | Msa1369430 | 0.848994 | 4.297329e-60 | -8.615850e-47 |
| Msa1025370 | Msa1369430 | 0.844510 | 7.230675e-59 | -8.615850e-47 |
| Msa1028230 | Msa1369430 | 0.806959 | 6.385978e-50 | -8.615850e-47 |
| Msa1044830 | Msa1369430 | 0.846091 | 2.700154e-59 | -8.615850e-47 |
| Msa1044840 | Msa1369430 | 0.851457 | 8.767988e-61 | -8.615850e-47 |
| Msa1057920 | Msa1369430 | 0.807212 | 5.645157e-50 | -8.615850e-47 |
| Msa1060840 | Msa1369430 | 0.818512 | 1.886196e-52 | -8.615850e-47 |
| Msa1085740 | Msa1369430 | 0.815886 | 7.345925e-52 | -8.615850e-47 |
| Msa1092990 | Msa1369430 | 0.879623 | 1.071652e-69 | -8.615850e-47 |
| Msa1100980 | Msa1369430 | 0.841501 | 4.573470e-58 | -8.615850e-47 |
| Msa0267000 | Msa1369430 | 0.838116 | 3.480241e-57 | -8.615850e-47 |
| Msa0267010 | Msa1369430 | 0.843028 | 1.802567e-58 | -8.615850e-47 |
| Msa0270520 | Msa1369430 | 0.809387 | 1.940438e-50 | -8.615850e-47 |
| Msa0311750 | Msa1369430 | 0.812492 | 4.126703e-51 | -8.615850e-47 |
| Msa0313760 | Msa1369430 | 0.815374 | 9.550643e-52 | -8.615850e-47 |
| Msa0342240 | Msa1369430 | 0.846520 | 2.062801e-59 | -8.615850e-47 |
| Msa0349360 | Msa1369430 | 0.822995 | 1.757057e-53 | -8.615850e-47 |
| Msa0360510 | Msa1369430 | 0.837581 | 4.777444e-57 | -8.615850e-47 |
| Msa0363300 | Msa1369430 | 0.801236 | 9.905277e-49 | -8.615850e-47 |
| Msa1109440 | Msa1369430 | 0.844921 | 5.603159e-59 | -8.615850e-47 |
| Msa1121200 | Msa1369430 | 0.814457 | 1.526166e-51 | -8.615850e-47 |
| Msa1135740 | Msa1369430 | 0.820008 | 8.604037e-53 | -8.615850e-47 |
| Msa1136090 | Msa1369430 | 0.817706 | 2.868881e-52 | -8.615850e-47 |
| Msa1146110 | Msa1369430 | 0.820272 | 7.485433e-53 | -8.615850e-47 |
| Msa1149360 | Msa1369430 | 0.811567 | 6.562640e-51 | -8.615850e-47 |
| Msa1150370 | Msa1369430 | 0.822773 | 1.979985e-53 | -8.615850e-47 |
| Msa1173920 | Msa1369430 | 0.839545 | 1.486597e-57 | -8.615850e-47 |
| Msa1182090 | Msa1369430 | 0.812009 | 5.259667e-51 | -8.615850e-47 |
| Msa1184420 | Msa1369430 | 0.874224 | 7.983185e-68 | -8.615850e-47 |
| Msa1187940 | Msa1369430 | 0.819253 | 1.279990e-52 | -8.615850e-47 |
| Msa1187950 | Msa1369430 | 0.823932 | 1.061199e-53 | -8.615850e-47 |
| Msa1192640 | Msa1369430 | 0.845450 | 4.031299e-59 | -8.615850e-47 |
| Msa0491590 | Msa1369430 | 0.814420 | 1.554911e-51 | -8.615850e-47 |
| Msa0493000 | Msa1369430 | 0.812599 | 3.910179e-51 | -8.615850e-47 |
| Msa0505080 | Msa1369430 | 0.801767 | 7.707544e-49 | -8.615850e-47 |
| Msa0506270 | Msa1369430 | 0.819890 | 9.159684e-53 | -8.615850e-47 |
| Msa0564890 | Msa1369430 | 0.827728 | 1.332705e-54 | -8.615850e-47 |
| Msa0596150 | Msa1369430 | 0.804018 | 2.641636e-49 | -8.615850e-47 |
| Msa0598780 | Msa1369430 | 0.825197 | 5.345177e-54 | -8.615850e-47 |
| Msa0846330 | Msa1369430 | 0.854637 | 1.078210e-61 | -8.615850e-47 |
| Msa0846350 | Msa1369430 | 0.852256 | 5.201809e-61 | -8.615850e-47 |
| Msa0854980 | Msa1369430 | 0.802049 | 6.746895e-49 | -8.615850e-47 |
| Msa0858980 | Msa1369430 | 0.841272 | 5.253047e-58 | -8.615850e-47 |
| Msa0864070 | Msa1369430 | 0.813704 | 2.236786e-51 | -8.615850e-47 |
| Msa0865320 | Msa1369430 | 0.826728 | 2.313886e-54 | -8.615850e-47 |
| Msa0877250 | Msa1369430 | 0.824183 | 9.266156e-54 | -8.615850e-47 |
| Msa0885290 | Msa1369430 | 0.830755 | 2.456841e-55 | -8.615850e-47 |
| Msa0888370 | Msa1369430 | 0.804942 | 1.695267e-49 | -8.615850e-47 |
| Msa0897880 | Msa1369430 | 0.807297 | 5.414562e-50 | -8.615850e-47 |
| Msa0899430 | Msa1369430 | 0.812582 | 3.942427e-51 | -8.615850e-47 |
| Msa0899450 | Msa1369430 | 0.814627 | 1.399525e-51 | -8.615850e-47 |
| Msa0907260 | Msa1369430 | 0.826991 | 2.001481e-54 | -8.615850e-47 |
| Msa0952720 | Msa1369430 | 0.808776 | 2.623114e-50 | -8.615850e-47 |
| Msa0956270 | Msa1369430 | 0.821296 | 4.354759e-53 | -8.615850e-47 |
| Msa0957860 | Msa1369430 | 0.809467 | 1.865369e-50 | -8.615850e-47 |
| Msa0957960 | Msa1369430 | 0.809231 | 2.096240e-50 | -8.615850e-47 |
| Msa0958550 | Msa1369430 | 0.819740 | 9.911152e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1369430 | MtrunA17_Chr2g0320884 | 73.913 | 115 | 20 | 3 | 1 | 105 | 163 | 277 | 6.85e-21 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTAGGCCTCTTCTTTCTT+TGG | 0.167682 | tig0018782:+133488 | None:intergenic |
| GAAGATTGTGATGATGAAAT+TGG | 0.327410 | tig0018782:-133951 | Msa1369430:CDS |
| CCTTTAGAACATTATCTTCA+AGG | 0.416307 | tig0018782:-133308 | Msa1369430:intron |
| AATGCCACTCCTGAGAAAAC+TGG | 0.441679 | tig0018782:-133427 | Msa1369430:intron |
| CTTTAGAACATTATCTTCAA+GGG | 0.524266 | tig0018782:-133307 | Msa1369430:intron |
| TGTGTCATTACCTTCTTCAC+AGG | 0.526680 | tig0018782:+133599 | None:intergenic |
| GGAAGAGACTCCTGTGAAGA+AGG | 0.538391 | tig0018782:-133609 | Msa1369430:intron |
| TGTGAAGGTTGTTGATCTAA+AGG | 0.545160 | tig0018782:-133985 | Msa1369430:CDS |
| TGAGAGTGATGAAGATGACG+AGG | 0.555243 | tig0018782:-133630 | Msa1369430:CDS |
| AGGTGGACCAAAGAAAGAAG+AGG | 0.653905 | tig0018782:-133495 | Msa1369430:CDS |
| TGCACCTGCAAAACATGTGA+AGG | 0.659451 | tig0018782:-134000 | Msa1369430:CDS |
| TTATCTTCAAGGGCATTGTG+AGG | 0.660935 | tig0018782:-133297 | Msa1369430:CDS |
| AATTGGAAGCTCTGATGATG+AGG | 0.661842 | tig0018782:-133934 | Msa1369430:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAATATATAATACAACT+TGG | + | tig0018782:133895-133914 | None:intergenic | 15.0% |
| !! | TTACAATATATAATACAACT+TGG | + | tig0018782:133895-133914 | None:intergenic | 15.0% |
| !!! | ATAAATTTGTTAAAAGTGCT+AGG | - | tig0018782:133479-133498 | Msa1369430:CDS | 20.0% |
| !!! | TAAATTTGTTAAAAGTGCTA+GGG | - | tig0018782:133480-133499 | Msa1369430:CDS | 20.0% |
| !!! | TTAGTATCTTTTTGTCTAAT+TGG | - | tig0018782:133925-133944 | Msa1369430:intron | 20.0% |
| !!! | ATAAATTTGTTAAAAGTGCT+AGG | - | tig0018782:133479-133498 | Msa1369430:CDS | 20.0% |
| !!! | TAAATTTGTTAAAAGTGCTA+GGG | - | tig0018782:133480-133499 | Msa1369430:CDS | 20.0% |
| !!! | TTAGTATCTTTTTGTCTAAT+TGG | - | tig0018782:133925-133944 | Msa1369430:intron | 20.0% |
| !!! | TTTTTAGCATCAGCTTTTTT+AGG | + | tig0018782:133268-133287 | None:intergenic | 25.0% |
| ! | CTTCGTATATATTAGATTGA+AGG | + | tig0018782:133449-133468 | None:intergenic | 25.0% |
| !!! | AAATTTGTTAAAAGTGCTAG+GGG | - | tig0018782:133481-133500 | Msa1369430:CDS | 25.0% |
| ! | TATATTTACTGAAGATGAGA+AGG | + | tig0018782:133541-133560 | None:intergenic | 25.0% |
| !! | TTGATCTTGATAATTGTAGA+TGG | - | tig0018782:133607-133626 | Msa1369430:intron | 25.0% |
| !!! | CTTTAGAACATTATCTTCAA+GGG | - | tig0018782:133984-134003 | Msa1369430:CDS | 25.0% |
| !!! | TTTTTAGCATCAGCTTTTTT+AGG | + | tig0018782:133268-133287 | None:intergenic | 25.0% |
| ! | CTTCGTATATATTAGATTGA+AGG | + | tig0018782:133449-133468 | None:intergenic | 25.0% |
| !!! | AAATTTGTTAAAAGTGCTAG+GGG | - | tig0018782:133481-133500 | Msa1369430:CDS | 25.0% |
| ! | TATATTTACTGAAGATGAGA+AGG | + | tig0018782:133541-133560 | None:intergenic | 25.0% |
| !! | TTGATCTTGATAATTGTAGA+TGG | - | tig0018782:133607-133626 | Msa1369430:intron | 25.0% |
| !!! | CTTTAGAACATTATCTTCAA+GGG | - | tig0018782:133984-134003 | Msa1369430:CDS | 25.0% |
| ! | GAAGATTGTGATGATGAAAT+TGG | - | tig0018782:133340-133359 | Msa1369430:intron | 30.0% |
| ! | TGCTATAAGTTGTCCATTTT+TGG | - | tig0018782:133411-133430 | Msa1369430:intron | 30.0% |
| !! | AATTTGTTAAAAGTGCTAGG+GGG | - | tig0018782:133482-133501 | Msa1369430:CDS | 30.0% |
| !! | AACTTGTCATTCTGTTTTGA+AGG | - | tig0018782:133776-133795 | Msa1369430:intron | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+AGG | + | tig0018782:133822-133841 | None:intergenic | 30.0% |
| CCTTGAAGATAATGTTCTAA+AGG | + | tig0018782:133986-134005 | None:intergenic | 30.0% | |
| !! | CCTTTAGAACATTATCTTCA+AGG | - | tig0018782:133983-134002 | Msa1369430:CDS | 30.0% |
| AGTATGTATGCAACCAAAAA+TGG | - | tig0018782:134026-134045 | Msa1369430:CDS | 30.0% | |
| GTATGTATGCAACCAAAAAT+GGG | - | tig0018782:134027-134046 | Msa1369430:CDS | 30.0% | |
| !! | ATGTCCATTTTTCCCATTTT+TGG | + | tig0018782:134042-134061 | None:intergenic | 30.0% |
| ! | GAAGATTGTGATGATGAAAT+TGG | - | tig0018782:133340-133359 | Msa1369430:intron | 30.0% |
| ! | TGCTATAAGTTGTCCATTTT+TGG | - | tig0018782:133411-133430 | Msa1369430:intron | 30.0% |
| !! | AATTTGTTAAAAGTGCTAGG+GGG | - | tig0018782:133482-133501 | Msa1369430:CDS | 30.0% |
| !! | AACTTGTCATTCTGTTTTGA+AGG | - | tig0018782:133776-133795 | Msa1369430:intron | 30.0% |
| !!! | GTTTTTGAAGCAGATTCATT+AGG | + | tig0018782:133822-133841 | None:intergenic | 30.0% |
| CCTTGAAGATAATGTTCTAA+AGG | + | tig0018782:133986-134005 | None:intergenic | 30.0% | |
| !! | CCTTTAGAACATTATCTTCA+AGG | - | tig0018782:133983-134002 | Msa1369430:CDS | 30.0% |
| AGTATGTATGCAACCAAAAA+TGG | - | tig0018782:134026-134045 | Msa1369430:CDS | 30.0% | |
| GTATGTATGCAACCAAAAAT+GGG | - | tig0018782:134027-134046 | Msa1369430:CDS | 30.0% | |
| !! | ATGTCCATTTTTCCCATTTT+TGG | + | tig0018782:134042-134061 | None:intergenic | 30.0% |
| TGTGAAGGTTGTTGATCTAA+AGG | - | tig0018782:133306-133325 | Msa1369430:intron | 35.0% | |
| GACAGTATGACTACCAAAAA+TGG | + | tig0018782:133427-133446 | None:intergenic | 35.0% | |
| TCATATAGTGTTCTCAGCTT+AGG | - | tig0018782:133508-133527 | Msa1369430:intron | 35.0% | |
| !!! | TTGTCATTCTGTTTTGAAGG+TGG | - | tig0018782:133779-133798 | Msa1369430:intron | 35.0% |
| GCAACCAAAAATGGGAAAAA+TGG | - | tig0018782:134035-134054 | Msa1369430:CDS | 35.0% | |
| TGTGAAGGTTGTTGATCTAA+AGG | - | tig0018782:133306-133325 | Msa1369430:intron | 35.0% | |
| GACAGTATGACTACCAAAAA+TGG | + | tig0018782:133427-133446 | None:intergenic | 35.0% | |
| TCATATAGTGTTCTCAGCTT+AGG | - | tig0018782:133508-133527 | Msa1369430:intron | 35.0% | |
| !!! | TTGTCATTCTGTTTTGAAGG+TGG | - | tig0018782:133779-133798 | Msa1369430:intron | 35.0% |
| GCAACCAAAAATGGGAAAAA+TGG | - | tig0018782:134035-134054 | Msa1369430:CDS | 35.0% | |
| ! | ACAACCTTCACATGTTTTGC+AGG | + | tig0018782:133298-133317 | None:intergenic | 40.0% |
| ! | AATTGGAAGCTCTGATGATG+AGG | - | tig0018782:133357-133376 | Msa1369430:intron | 40.0% |
| ! | TGTGTCATTACCTTCTTCAC+AGG | + | tig0018782:133695-133714 | None:intergenic | 40.0% |
| CATTAGGCCTCTTCTTTCTT+TGG | + | tig0018782:133806-133825 | None:intergenic | 40.0% | |
| !! | TTATCTTCAAGGGCATTGTG+AGG | - | tig0018782:133994-134013 | Msa1369430:CDS | 40.0% |
| ! | ACAACCTTCACATGTTTTGC+AGG | + | tig0018782:133298-133317 | None:intergenic | 40.0% |
| ! | AATTGGAAGCTCTGATGATG+AGG | - | tig0018782:133357-133376 | Msa1369430:intron | 40.0% |
| ! | TGTGTCATTACCTTCTTCAC+AGG | + | tig0018782:133695-133714 | None:intergenic | 40.0% |
| CATTAGGCCTCTTCTTTCTT+TGG | + | tig0018782:133806-133825 | None:intergenic | 40.0% | |
| !! | TTATCTTCAAGGGCATTGTG+AGG | - | tig0018782:133994-134013 | Msa1369430:CDS | 40.0% |
| TGCACCTGCAAAACATGTGA+AGG | - | tig0018782:133291-133310 | Msa1369430:CDS | 45.0% | |
| TGAGAGTGATGAAGATGACG+AGG | - | tig0018782:133661-133680 | Msa1369430:CDS | 45.0% | |
| AGGTGGACCAAAGAAAGAAG+AGG | - | tig0018782:133796-133815 | Msa1369430:intron | 45.0% | |
| AATGCCACTCCTGAGAAAAC+TGG | - | tig0018782:133864-133883 | Msa1369430:intron | 45.0% | |
| ! | TTGGTCTCACCAGTTTTCTC+AGG | + | tig0018782:133876-133895 | None:intergenic | 45.0% |
| TGCACCTGCAAAACATGTGA+AGG | - | tig0018782:133291-133310 | Msa1369430:CDS | 45.0% | |
| TGAGAGTGATGAAGATGACG+AGG | - | tig0018782:133661-133680 | Msa1369430:CDS | 45.0% | |
| AGGTGGACCAAAGAAAGAAG+AGG | - | tig0018782:133796-133815 | Msa1369430:intron | 45.0% | |
| AATGCCACTCCTGAGAAAAC+TGG | - | tig0018782:133864-133883 | Msa1369430:intron | 45.0% | |
| ! | TTGGTCTCACCAGTTTTCTC+AGG | + | tig0018782:133876-133895 | None:intergenic | 45.0% |
| GGAAGAGACTCCTGTGAAGA+AGG | - | tig0018782:133682-133701 | Msa1369430:intron | 50.0% | |
| ! | CTCACCAGTTTTCTCAGGAG+TGG | + | tig0018782:133871-133890 | None:intergenic | 50.0% |
| GGAAGAGACTCCTGTGAAGA+AGG | - | tig0018782:133682-133701 | Msa1369430:intron | 50.0% | |
| ! | CTCACCAGTTTTCTCAGGAG+TGG | + | tig0018782:133871-133890 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018782 | gene | 133250 | 134063 | 133250 | ID=Msa1369430;Name=Msa1369430 |
| tig0018782 | mRNA | 133250 | 134063 | 133250 | ID=Msa1369430-mRNA-1;Parent=Msa1369430;Name=Msa1369430-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|4|0|122 |
| tig0018782 | exon | 133935 | 134063 | 133935 | ID=Msa1369430-mRNA-1:exon:1129;Parent=Msa1369430-mRNA-1 |
| tig0018782 | exon | 133610 | 133687 | 133610 | ID=Msa1369430-mRNA-1:exon:1128;Parent=Msa1369430-mRNA-1 |
| tig0018782 | exon | 133428 | 133515 | 133428 | ID=Msa1369430-mRNA-1:exon:1127;Parent=Msa1369430-mRNA-1 |
| tig0018782 | exon | 133250 | 133323 | 133250 | ID=Msa1369430-mRNA-1:exon:1126;Parent=Msa1369430-mRNA-1 |
| tig0018782 | CDS | 133935 | 134063 | 133935 | ID=Msa1369430-mRNA-1:cds;Parent=Msa1369430-mRNA-1 |
| tig0018782 | CDS | 133610 | 133687 | 133610 | ID=Msa1369430-mRNA-1:cds;Parent=Msa1369430-mRNA-1 |
| tig0018782 | CDS | 133428 | 133515 | 133428 | ID=Msa1369430-mRNA-1:cds;Parent=Msa1369430-mRNA-1 |
| tig0018782 | CDS | 133250 | 133323 | 133250 | ID=Msa1369430-mRNA-1:cds;Parent=Msa1369430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
