Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349360 | AES68803.1 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 3.99e-33 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349360 | G7IVW9 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 1.90e-33 | 117 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0123810 | Msa0349360 | 0.803217 | 3.872879e-49 | -8.615850e-47 |
| Msa0178960 | Msa0349360 | 0.811224 | 7.789433e-51 | -8.615850e-47 |
| Msa0232850 | Msa0349360 | 0.813773 | 2.159533e-51 | -8.615850e-47 |
| Msa0251320 | Msa0349360 | 0.800209 | 1.604549e-48 | -8.615850e-47 |
| Msa0311750 | Msa0349360 | 0.800218 | 1.597716e-48 | -8.615850e-47 |
| Msa0349360 | Msa0397350 | 0.834958 | 2.217612e-56 | -8.615850e-47 |
| Msa0349360 | Msa0435230 | 0.809890 | 1.512963e-50 | -8.615850e-47 |
| Msa0349360 | Msa0479340 | 0.813742 | 2.194761e-51 | -8.615850e-47 |
| Msa0349360 | Msa0491220 | 0.804234 | 2.382204e-49 | -8.615850e-47 |
| Msa0349360 | Msa0493000 | 0.801066 | 1.073124e-48 | -8.615850e-47 |
| Msa0349360 | Msa0598780 | 0.800841 | 1.192947e-48 | -8.615850e-47 |
| Msa0349360 | Msa0639610 | 0.813773 | 2.159631e-51 | -8.615850e-47 |
| Msa0349360 | Msa0648860 | 0.801130 | 1.041313e-48 | -8.615850e-47 |
| Msa0349360 | Msa0701010 | 0.802924 | 4.453932e-49 | -8.615850e-47 |
| Msa0349360 | Msa0766630 | 0.811147 | 8.097708e-51 | -8.615850e-47 |
| Msa0349360 | Msa0796690 | 0.815352 | 9.658718e-52 | -8.615850e-47 |
| Msa0349360 | Msa0842650 | 0.805937 | 1.048941e-49 | -8.615850e-47 |
| Msa0349360 | Msa0846350 | 0.807146 | 5.827419e-50 | -8.615850e-47 |
| Msa0349360 | Msa0877250 | 0.821339 | 4.255734e-53 | -8.615850e-47 |
| Msa0349360 | Msa0885280 | 0.812970 | 3.241874e-51 | -8.615850e-47 |
| Msa0349360 | Msa0898380 | 0.831845 | 1.325148e-55 | -8.615850e-47 |
| Msa0349360 | Msa0907260 | 0.809613 | 1.735296e-50 | -8.615850e-47 |
| Msa0349360 | Msa0956270 | 0.804680 | 1.923031e-49 | -8.615850e-47 |
| Msa0349360 | Msa0998690 | 0.813029 | 3.146764e-51 | -8.615850e-47 |
| Msa0349360 | Msa1002310 | 0.841642 | 4.197362e-58 | -8.615850e-47 |
| Msa0349360 | Msa1002320 | 0.817145 | 3.837290e-52 | -8.615850e-47 |
| Msa0349360 | Msa1007030 | 0.800050 | 1.728282e-48 | -8.615850e-47 |
| Msa0349360 | Msa1057920 | 0.805342 | 1.398165e-49 | -8.615850e-47 |
| Msa0349360 | Msa1082580 | 0.800255 | 1.570417e-48 | -8.615850e-47 |
| Msa0349360 | Msa1085740 | 0.807298 | 5.412157e-50 | -8.615850e-47 |
| Msa0349360 | Msa1092990 | 0.806085 | 9.763207e-50 | -8.615850e-47 |
| Msa0349360 | Msa1114030 | 0.801113 | 1.049581e-48 | -8.615850e-47 |
| Msa0349360 | Msa1120610 | 0.814723 | 1.332682e-51 | -8.615850e-47 |
| Msa0349360 | Msa1136090 | 0.844297 | 8.250755e-59 | -8.615850e-47 |
| Msa0349360 | Msa1137690 | 0.806046 | 9.946801e-50 | -8.615850e-47 |
| Msa0349360 | Msa1182090 | 0.825289 | 5.085141e-54 | -8.615850e-47 |
| Msa0349360 | Msa1230430 | 0.811178 | 7.971822e-51 | -8.615850e-47 |
| Msa0349360 | Msa1244250 | 0.807446 | 5.035810e-50 | -8.615850e-47 |
| Msa0349360 | Msa1249490 | 0.834722 | 2.543542e-56 | -8.615850e-47 |
| Msa0349360 | Msa1273230 | 0.813452 | 2.542100e-51 | -8.615850e-47 |
| Msa0349360 | Msa1284680 | 0.807898 | 4.035981e-50 | -8.615850e-47 |
| Msa0349360 | Msa1369430 | 0.822995 | 1.757057e-53 | -8.615850e-47 |
| Msa0349360 | Msa1402790 | 0.820018 | 8.561555e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349360 | MtrunA17_Chr3g0082831 | 95.000 | 60 | 3 | 0 | 1 | 60 | 1 | 60 | 3.67e-37 | 117 |
| Msa0349360 | MtrunA17_Chr3g0082821 | 60.345 | 58 | 20 | 2 | 1 | 55 | 1 | 58 | 8.66e-17 | 67.0 |
| Msa0349360 | MtrunA17_Chr3g0082851 | 54.717 | 53 | 21 | 3 | 6 | 55 | 5 | 57 | 3.44e-11 | 52.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 24 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATAAATAAATAAATAAA+AGG | 0.180600 | 3_1:+12879299 | None:intergenic |
| GCTTCTTGTATCAATTAAAT+TGG | 0.234201 | 3_1:-12883332 | Msa0349360:CDS |
| TAAGAAGCTTATATTGAATA+TGG | 0.250103 | 3_1:-12883368 | Msa0349360:CDS |
| TCTCACTGCCTCAATCTATT+AGG | 0.267933 | 3_1:+12879412 | None:intergenic |
| TTTATTTATAAGAATAATAA+TGG | 0.286075 | 3_1:-12879284 | Msa0349360:three_prime_UTR |
| TGAATATATTGACTCAATAT+TGG | 0.287423 | 3_1:-12879326 | Msa0349360:three_prime_UTR |
| CTACAGCAAGGGTACCCCTT+TGG | 0.384114 | 3_1:-12883309 | Msa0349360:CDS |
| TCCAGCATATAATTGAGCTT+TGG | 0.408952 | 3_1:+12879466 | None:intergenic |
| TAATTGAGCTTTGGATCCTC+AGG | 0.410210 | 3_1:+12879475 | None:intergenic |
| AAATAAATAAATAAATAAAA+GGG | 0.457934 | 3_1:+12879300 | None:intergenic |
| TGAAAATAGTGGTGGTCTCT+TGG | 0.465816 | 3_1:+12879506 | None:intergenic |
| GATCATCGGCAGTAAGTAGT+AGG | 0.490818 | 3_1:+12879528 | None:intergenic |
| TCCAAAGCTCAATTATATGC+TGG | 0.505060 | 3_1:-12879467 | Msa0349360:three_prime_UTR |
| AGGGATTATGATGAAAATAG+TGG | 0.526545 | 3_1:+12879495 | None:intergenic |
| GTGGTGGTCTCTTGGATCAT+CGG | 0.545328 | 3_1:+12879514 | None:intergenic |
| TACTTACGTGCTTTGAGATG+AGG | 0.545847 | 3_1:+12883277 | None:intergenic |
| AATTAAATTGGCTACAGCAA+GGG | 0.559844 | 3_1:-12883320 | Msa0349360:CDS |
| AAAGAGATCCTAATAGATTG+AGG | 0.564683 | 3_1:-12879420 | Msa0349360:three_prime_UTR |
| ATGAGGCTCAGAAATCCAAA+GGG | 0.574064 | 3_1:+12883294 | None:intergenic |
| AATTGAGCTTTGGATCCTCA+GGG | 0.585492 | 3_1:+12879476 | None:intergenic |
| CAATTAAATTGGCTACAGCA+AGG | 0.607945 | 3_1:-12883321 | Msa0349360:CDS |
| GATGAGGCTCAGAAATCCAA+AGG | 0.626210 | 3_1:+12883293 | None:intergenic |
| GATTATGATGAAAATAGTGG+TGG | 0.672789 | 3_1:+12879498 | None:intergenic |
| TGAGGCTCAGAAATCCAAAG+GGG | 0.757467 | 3_1:+12883295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAATAAATAAATAAAA+GGG | + | chr3_1:12883396-12883415 | None:intergenic | 0.0% |
| !! | TAAATAAATAAATAAATAAA+AGG | + | chr3_1:12883397-12883416 | None:intergenic | 0.0% |
| !!! | TCGAATTTTATAAATTTTTT+AGG | - | chr3_1:12880046-12880065 | Msa0349360:intron | 10.0% |
| !!! | CGAATTTTATAAATTTTTTA+GGG | - | chr3_1:12880047-12880066 | Msa0349360:intron | 10.0% |
| !! | AACATTAATTCAAATAAATA+TGG | + | chr3_1:12881347-12881366 | None:intergenic | 10.0% |
| !! | CAAACAAAAATAAAATTAAA+AGG | + | chr3_1:12882617-12882636 | None:intergenic | 10.0% |
| !!! | TTTTTGATAAAATTAGTTAT+TGG | - | chr3_1:12882675-12882694 | Msa0349360:intron | 10.0% |
| !! | AAAATAATAAATGACAAATA+AGG | + | chr3_1:12882731-12882750 | None:intergenic | 10.0% |
| !!! | CCAATATTTTATAATTTTTT+TGG | + | chr3_1:12883328-12883347 | None:intergenic | 10.0% |
| !! | CCAAAAAAATTATAAAATAT+TGG | - | chr3_1:12883325-12883344 | Msa0349360:CDS | 10.0% |
| !! | ATATTCAGAAAAAATTAAAA+AGG | + | chr3_1:12883354-12883373 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883030-12883049 | None:intergenic | 100.0% |
| !! | TATAAATAGTTCAATCTTAA+AGG | + | chr3_1:12879485-12879504 | None:intergenic | 15.0% |
| !! | TAACAGGTATTTATAATATA+TGG | + | chr3_1:12880124-12880143 | None:intergenic | 15.0% |
| !!! | CAAGAATTTAATATTTTCAA+AGG | + | chr3_1:12880767-12880786 | None:intergenic | 15.0% |
| !! | GAAAATATTAAATTCTTGTT+AGG | - | chr3_1:12880769-12880788 | Msa0349360:intron | 15.0% |
| !!! | GAAAAGAATAAATTTTTGTT+AGG | + | chr3_1:12880873-12880892 | None:intergenic | 15.0% |
| !!! | CAAAAATTTATTCTTTTCAA+AGG | - | chr3_1:12880875-12880894 | Msa0349360:intron | 15.0% |
| !! | ATAATAATACATTTACAATG+AGG | - | chr3_1:12881619-12881638 | Msa0349360:intron | 15.0% |
| !!! | GTATAAAATATCTTAGTTTT+TGG | - | chr3_1:12882638-12882657 | Msa0349360:intron | 15.0% |
| !!! | TTACTTGTTTTTATTGTTTA+TGG | - | chr3_1:12882749-12882768 | Msa0349360:intron | 15.0% |
| !! | ATAAGTATATTACAATTTAC+AGG | + | chr3_1:12882982-12883001 | None:intergenic | 15.0% |
| !!! | TGCAAACAATTTTTTTTTTT+GGG | + | chr3_1:12883060-12883079 | None:intergenic | 15.0% |
| !!! | TTGCAAACAATTTTTTTTTT+TGG | + | chr3_1:12883061-12883080 | None:intergenic | 15.0% |
| !! | AAAAAATTGTTTGCAAATTA+TGG | - | chr3_1:12883065-12883084 | Msa0349360:intron | 15.0% |
| !!! | TTGTATTAATTTTTGCTAAT+TGG | - | chr3_1:12883093-12883112 | Msa0349360:intron | 15.0% |
| !! | GTTTAAAAACATATAGCTTT+GGG | - | chr3_1:12879269-12879288 | Msa0349360:three_prime_UTR | 20.0% |
| !!! | CTATATTTTTTGCTTTAAGA+TGG | - | chr3_1:12879295-12879314 | Msa0349360:three_prime_UTR | 20.0% |
| !! | TAAGAAGCTTATATTGAATA+TGG | - | chr3_1:12879325-12879344 | Msa0349360:three_prime_UTR | 20.0% |
| !!! | TTTTTACAACCCATATTTTA+GGG | + | chr3_1:12879520-12879539 | None:intergenic | 20.0% |
| !!! | ATTTTTACAACCCATATTTT+AGG | + | chr3_1:12879521-12879540 | None:intergenic | 20.0% |
| !! | CAATATAACTTCATTATAAC+AGG | + | chr3_1:12880006-12880025 | None:intergenic | 20.0% |
| !!! | AAATTTTTTAGGGTTTGTTT+AGG | - | chr3_1:12880191-12880210 | Msa0349360:intron | 20.0% |
| !!! | ATTTTGTAGATTTGAAACAA+TGG | - | chr3_1:12880287-12880306 | Msa0349360:intron | 20.0% |
| !! | CAAGAAATTAACATTTAGAA+TGG | + | chr3_1:12880997-12881016 | None:intergenic | 20.0% |
| !! | TCTAAATGTTAATTTCTTGT+TGG | - | chr3_1:12880998-12881017 | Msa0349360:intron | 20.0% |
| !! | AACTATCATTACATTACATT+CGG | + | chr3_1:12881188-12881207 | None:intergenic | 20.0% |
| !! | TTTAATGAGTACATTAAGAA+AGG | - | chr3_1:12881897-12881916 | Msa0349360:intron | 20.0% |
| !!! | TTCTAAAACATTCATTTCAA+AGG | + | chr3_1:12882538-12882557 | None:intergenic | 20.0% |
| !!! | AAACAATTTTTTTTTTTGGG+GGG | + | chr3_1:12883057-12883076 | None:intergenic | 20.0% |
| !!! | CAAACAATTTTTTTTTTTGG+GGG | + | chr3_1:12883058-12883077 | None:intergenic | 20.0% |
| !!! | GCAAACAATTTTTTTTTTTG+GGG | + | chr3_1:12883059-12883078 | None:intergenic | 20.0% |
| !!! | TGAATATATTGACTCAATAT+TGG | - | chr3_1:12883367-12883386 | Msa0349360:CDS | 20.0% |
| ! | GCTTCTTGTATCAATTAAAT+TGG | - | chr3_1:12879361-12879380 | Msa0349360:three_prime_UTR | 25.0% |
| !!! | GAAAATGTTTTAGAGATACT+AGG | + | chr3_1:12879443-12879462 | None:intergenic | 25.0% |
| !! | TTTCATCAAGATTTTGTGAA+GGG | - | chr3_1:12879546-12879565 | Msa0349360:intron | 25.0% |
| ! | TTGAAAATTTGAGAGAAAGA+TGG | + | chr3_1:12879770-12879789 | None:intergenic | 25.0% |
| !! | TGATTTAGTGGAAGAAATTT+TGG | + | chr3_1:12879824-12879843 | None:intergenic | 25.0% |
| ! | ATAACTTACTTGTGATTTAG+TGG | + | chr3_1:12879836-12879855 | None:intergenic | 25.0% |
| ! | ATATTAAATTCTTGTTAGGC+TGG | - | chr3_1:12880773-12880792 | Msa0349360:intron | 25.0% |
| ! | ACCAACAAGAATTTAACATT+TGG | - | chr3_1:12881102-12881121 | Msa0349360:intron | 25.0% |
| ! | TCCAAATGTTAAATTCTTGT+TGG | + | chr3_1:12881106-12881125 | None:intergenic | 25.0% |
| ! | ATGTAATGTAATGTTGTAGT+TGG | - | chr3_1:12881151-12881170 | Msa0349360:intron | 25.0% |
| ! | AATTCAAATAAATATGGCGT+TGG | + | chr3_1:12881341-12881360 | None:intergenic | 25.0% |
| ! | TCGTACATTTATTCCTTAAT+AGG | - | chr3_1:12881693-12881712 | Msa0349360:intron | 25.0% |
| ! | TACATTTATTCCTTAATAGG+TGG | - | chr3_1:12881696-12881715 | Msa0349360:intron | 25.0% |
| ! | ATTGGTTAAATATTCAAGTG+AGG | + | chr3_1:12881984-12882003 | None:intergenic | 25.0% |
| ! | GGGAAAAATGTAGAAAAAAT+AGG | - | chr3_1:12882146-12882165 | Msa0349360:intron | 25.0% |
| !! | AAAATAGGTTGAATGAATGA+TGG | - | chr3_1:12882161-12882180 | Msa0349360:intron | 25.0% |
| ! | AGGTTGAATGTAGAAAAAAT+AGG | - | chr3_1:12882210-12882229 | Msa0349360:intron | 25.0% |
| ! | GTTGAATGTTGAAAGAAAAT+AGG | - | chr3_1:12882232-12882251 | Msa0349360:intron | 25.0% |
| ! | TTGAATGAATGAAGAAAAAG+AGG | - | chr3_1:12882286-12882305 | Msa0349360:intron | 25.0% |
| !! | AAAAGCAATTTTCTTGTGAA+GGG | - | chr3_1:12882507-12882526 | Msa0349360:intron | 25.0% |
| !!! | TGAATGTTTTAGAAATTCGT+TGG | - | chr3_1:12882544-12882563 | Msa0349360:intron | 25.0% |
| !!! | GAATGTTTTAGAAATTCGTT+GGG | - | chr3_1:12882545-12882564 | Msa0349360:intron | 25.0% |
| ! | AAAATTAAAAGGGAGTTGAA+TGG | + | chr3_1:12882606-12882625 | None:intergenic | 25.0% |
| !!! | AACAATTTTTTTTTTTGGGG+GGG | + | chr3_1:12883056-12883075 | None:intergenic | 25.0% |
| AATTAAATTGGCTACAGCAA+GGG | - | chr3_1:12879373-12879392 | Msa0349360:three_prime_UTR | 30.0% | |
| CTTCACAAAATCTTGATGAA+AGG | + | chr3_1:12879547-12879566 | None:intergenic | 30.0% | |
| ! | CTTTCATCAAGATTTTGTGA+AGG | - | chr3_1:12879545-12879564 | Msa0349360:intron | 30.0% |
| !! | AGGGTTTGTTTAGGATTTTT+AGG | - | chr3_1:12880200-12880219 | Msa0349360:intron | 30.0% |
| !! | GGGTTTGTTTAGGATTTTTA+GGG | - | chr3_1:12880201-12880220 | Msa0349360:intron | 30.0% |
| ! | TGTAGATTTGAAACAATGGT+CGG | - | chr3_1:12880291-12880310 | Msa0349360:intron | 30.0% |
| ! | TGTTAAATTCTTGTTGGTCT+TGG | + | chr3_1:12881100-12881119 | None:intergenic | 30.0% |
| GAATAGAACAATAACACTTC+TGG | - | chr3_1:12881124-12881143 | Msa0349360:intron | 30.0% | |
| AATGTAATGTTGTAGTTGGA+AGG | - | chr3_1:12881155-12881174 | Msa0349360:intron | 30.0% | |
| ATCTACGTTACATTACATTG+TGG | + | chr3_1:12881248-12881267 | None:intergenic | 30.0% | |
| ! | AATTGAGTCTGGTATTTTTC+AGG | + | chr3_1:12881799-12881818 | None:intergenic | 30.0% |
| CTCAATCAATAAATTGAGTC+TGG | + | chr3_1:12881810-12881829 | None:intergenic | 30.0% | |
| ! | CAGACTCAATTTATTGATTG+AGG | - | chr3_1:12881808-12881827 | Msa0349360:intron | 30.0% |
| ! | AATTGAGTCTGGTATTTTTC+AGG | + | chr3_1:12881799-12881818 | None:intergenic | 30.0% |
| TTTAACCAATGAACAAGTTC+TGG | - | chr3_1:12881994-12882013 | Msa0349360:intron | 30.0% | |
| GAAAGAGTAAAGAAGTAAAG+AGG | - | chr3_1:12882065-12882084 | Msa0349360:intron | 30.0% | |
| ! | AGAATGTGAGGGTTTTTATA+GGG | - | chr3_1:12882125-12882144 | Msa0349360:intron | 30.0% |
| ! | TGAATGAATGATGGAAAAAG+AGG | - | chr3_1:12882170-12882189 | Msa0349360:intron | 30.0% |
| ! | GAAAGAAAATAGGTTGAATG+TGG | - | chr3_1:12882242-12882261 | Msa0349360:intron | 30.0% |
| ATGAAGAAAAAGAGGTTGAA+TGG | - | chr3_1:12882294-12882313 | Msa0349360:intron | 30.0% | |
| ! | GAAAAGCAATTTTCTTGTGA+AGG | - | chr3_1:12882506-12882525 | Msa0349360:intron | 30.0% |
| TTCATTTGATCCACACATAT+TGG | + | chr3_1:12882897-12882916 | None:intergenic | 30.0% | |
| !! | TGCTATATTATTGACTCACT+AGG | - | chr3_1:12882925-12882944 | Msa0349360:intron | 30.0% |
| !!! | ACAATTTTTTTTTTTGGGGG+GGG | + | chr3_1:12883055-12883074 | None:intergenic | 30.0% |
| GATTATGATGAAAATAGTGG+TGG | + | chr3_1:12883198-12883217 | None:intergenic | 30.0% | |
| AGGGATTATGATGAAAATAG+TGG | + | chr3_1:12883201-12883220 | None:intergenic | 30.0% | |
| ! | TATTTTCATCATAATCCCTG+AGG | - | chr3_1:12883202-12883221 | Msa0349360:intron | 30.0% |
| AAAGAGATCCTAATAGATTG+AGG | - | chr3_1:12883273-12883292 | Msa0349360:intron | 30.0% | |
| CAATTAAATTGGCTACAGCA+AGG | - | chr3_1:12879372-12879391 | Msa0349360:three_prime_UTR | 35.0% | |
| TTCCAGAAAGCCCTAAAATA+TGG | - | chr3_1:12879507-12879526 | Msa0349360:CDS | 35.0% | |
| TCCAGAAAGCCCTAAAATAT+GGG | - | chr3_1:12879508-12879527 | Msa0349360:CDS | 35.0% | |
| GGTCATTTACTTGTGTCAAT+AGG | + | chr3_1:12879600-12879619 | None:intergenic | 35.0% | |
| ATTTGAGAGAAAGATGGTGA+TGG | + | chr3_1:12879764-12879783 | None:intergenic | 35.0% | |
| ! | GTAGATTTGAAACAATGGTC+GGG | - | chr3_1:12880292-12880311 | Msa0349360:intron | 35.0% |
| GACGTTCATGCAAAATTCAA+CGG | - | chr3_1:12880321-12880340 | Msa0349360:intron | 35.0% | |
| !! | ATTTGTCTTGCCTCTGAAAT+GGG | - | chr3_1:12880682-12880701 | Msa0349360:intron | 35.0% |
| TTTGAATTACCCCATTTCAG+AGG | + | chr3_1:12880695-12880714 | None:intergenic | 35.0% | |
| GGTAATTCAAACTTGCCAAA+CGG | - | chr3_1:12880704-12880723 | Msa0349360:intron | 35.0% | |
| !! | GATGAAGGTATTAAGTGTCA+AGG | - | chr3_1:12880800-12880819 | Msa0349360:intron | 35.0% |
| AGGTATTAAGTGTCAAGGAA+TGG | - | chr3_1:12880805-12880824 | Msa0349360:intron | 35.0% | |
| ! | GTTAGGATTGCTTTAGATGA+TGG | + | chr3_1:12880856-12880875 | None:intergenic | 35.0% |
| ATTCAAACTTGCCAAACAAC+AGG | + | chr3_1:12880932-12880951 | None:intergenic | 35.0% | |
| !! | TGTTGGCTTCGTTTAAATGA+TGG | - | chr3_1:12881015-12881034 | Msa0349360:intron | 35.0% |
| TGATAGTATCTAAGTGCCAA+CGG | + | chr3_1:12881070-12881089 | None:intergenic | 35.0% | |
| AATTGAGTCTGGTATTTCTC+AGG | + | chr3_1:12881759-12881778 | None:intergenic | 35.0% | |
| CTCAGTCAATAAATTGAGTC+TGG | + | chr3_1:12881770-12881789 | None:intergenic | 35.0% | |
| ! | CAGACTCAATTTATTGACTG+AGG | - | chr3_1:12881768-12881787 | Msa0349360:intron | 35.0% |
| CTCAGTCAATAAATTGAGTC+TGG | + | chr3_1:12881770-12881789 | None:intergenic | 35.0% | |
| ! | CAGACTCAATTTATTGACTG+AGG | - | chr3_1:12881768-12881787 | Msa0349360:intron | 35.0% |
| AAGTGAGTCTGGTATTATTC+AGG | + | chr3_1:12881879-12881898 | None:intergenic | 35.0% | |
| TGTACTCATTAAAGTGAGTC+TGG | + | chr3_1:12881890-12881909 | None:intergenic | 35.0% | |
| GTACATTAAGAAAGGAATCG+AGG | - | chr3_1:12881905-12881924 | Msa0349360:intron | 35.0% | |
| GTAAAGAGGAAATGAGAGTA+AGG | - | chr3_1:12882079-12882098 | Msa0349360:intron | 35.0% | |
| ! | GAGAATGTGAGGGTTTTTAT+AGG | - | chr3_1:12882124-12882143 | Msa0349360:intron | 35.0% |
| ! | GAATGTGAGGGTTTTTATAG+GGG | - | chr3_1:12882126-12882145 | Msa0349360:intron | 35.0% |
| ! | TGGAAAAAGAGGTTGATTGA+TGG | - | chr3_1:12882181-12882200 | Msa0349360:intron | 35.0% |
| ! | AGGTTGATTGATGGAAAAAG+AGG | - | chr3_1:12882190-12882209 | Msa0349360:intron | 35.0% |
| GGTTGAATGTGGAAAAAATG+TGG | - | chr3_1:12882253-12882272 | Msa0349360:intron | 35.0% | |
| AAAGAGGTTGAATGGTGAAA+AGG | - | chr3_1:12882302-12882321 | Msa0349360:intron | 35.0% | |
| CGTCATTTACTTGTGTCAAT+AGG | - | chr3_1:12882468-12882487 | Msa0349360:intron | 35.0% | |
| AGATTATCTTGGGTCAAGTT+GGG | - | chr3_1:12882575-12882594 | Msa0349360:intron | 35.0% | |
| TTTGATCCACACATATTGGT+GGG | + | chr3_1:12882893-12882912 | None:intergenic | 35.0% | |
| ATTTGATCCACACATATTGG+TGG | + | chr3_1:12882894-12882913 | None:intergenic | 35.0% | |
| TCAATCTTGTGAACTACACA+TGG | - | chr3_1:12882954-12882973 | Msa0349360:intron | 35.0% | |
| CAATCTTGTGAACTACACAT+GGG | - | chr3_1:12882955-12882974 | Msa0349360:intron | 35.0% | |
| !!! | AATTTTTTTTTTTGGGGGGG+GGG | + | chr3_1:12883053-12883072 | None:intergenic | 35.0% |
| !!! | CAATTTTTTTTTTTGGGGGG+GGG | + | chr3_1:12883054-12883073 | None:intergenic | 35.0% |
| !! | TCTTTTTGTGACCTCTAAGA+TGG | - | chr3_1:12883139-12883158 | Msa0349360:intron | 35.0% |
| TCCAAAGCTCAATTATATGC+TGG | - | chr3_1:12883226-12883245 | Msa0349360:intron | 35.0% | |
| TCCAGCATATAATTGAGCTT+TGG | + | chr3_1:12883230-12883249 | None:intergenic | 35.0% | |
| ATGAGGCTCAGAAATCCAAA+GGG | + | chr3_1:12879402-12879421 | None:intergenic | 40.0% | |
| !! | TACTTACGTGCTTTGAGATG+AGG | + | chr3_1:12879419-12879438 | None:intergenic | 40.0% |
| !!! | ACCCATATTTTAGGGCTTTC+TGG | + | chr3_1:12879512-12879531 | None:intergenic | 40.0% |
| !! | AAGATGGTGATGGTGATGAT+GGG | + | chr3_1:12879754-12879773 | None:intergenic | 40.0% |
| !! | AAAGATGGTGATGGTGATGA+TGG | + | chr3_1:12879755-12879774 | None:intergenic | 40.0% |
| GTTCATGCAAAATTCAACGG+CGG | - | chr3_1:12880324-12880343 | Msa0349360:intron | 40.0% | |
| TGCCTTGATGTAACGTTAAG+AGG | - | chr3_1:12880372-12880391 | Msa0349360:intron | 40.0% | |
| GACCTCTTAACGTTACATCA+AGG | + | chr3_1:12880377-12880396 | None:intergenic | 40.0% | |
| TGTAACGTTAAGAGGTCTCA+AGG | - | chr3_1:12880380-12880399 | Msa0349360:intron | 40.0% | |
| ! | AAAACGTGACGAGCATGTTT+TGG | - | chr3_1:12880532-12880551 | Msa0349360:intron | 40.0% |
| ! | AAACGTGACGAGCATGTTTT+GGG | - | chr3_1:12880533-12880552 | Msa0349360:intron | 40.0% |
| CAGAAGATCGTCACTAGTTA+GGG | - | chr3_1:12880637-12880656 | Msa0349360:intron | 40.0% | |
| GGCAAGACAAATGTTGTAGT+TGG | + | chr3_1:12880674-12880693 | None:intergenic | 40.0% | |
| ! | CATTTGTCTTGCCTCTGAAA+TGG | - | chr3_1:12880681-12880700 | Msa0349360:intron | 40.0% |
| !! | TTTGTCTTGCCTCTGAAATG+GGG | - | chr3_1:12880683-12880702 | Msa0349360:intron | 40.0% |
| AATTCTGAGCGAAATGCTTG+AGG | + | chr3_1:12880735-12880754 | None:intergenic | 40.0% | |
| !! | TGTTAGGCTGGTTTAGATGA+AGG | - | chr3_1:12880785-12880804 | Msa0349360:intron | 40.0% |
| ! | AGGAATGGACCTCATTTTGT+TGG | - | chr3_1:12880820-12880839 | Msa0349360:intron | 40.0% |
| ATCCAAGTGCCAACAAAATG+AGG | + | chr3_1:12880832-12880851 | None:intergenic | 40.0% | |
| AATGCTTGAGTCCTGTTGTT+TGG | - | chr3_1:12880918-12880937 | Msa0349360:intron | 40.0% | |
| TTGAATTTGCCCCATTTCAG+AGG | - | chr3_1:12880946-12880965 | Msa0349360:intron | 40.0% | |
| AATGGAACAAAAACACTCCC+GGG | + | chr3_1:12880979-12880998 | None:intergenic | 40.0% | |
| GAATGGAACAAAAACACTCC+CGG | + | chr3_1:12880980-12880999 | None:intergenic | 40.0% | |
| !! | ATGATGGTATCGATGTGTCA+AGG | - | chr3_1:12881031-12881050 | Msa0349360:intron | 40.0% |
| GAAGATGACTCCACCTATTA+AGG | + | chr3_1:12881709-12881728 | None:intergenic | 40.0% | |
| ! | CGTCGTACATTTATTGACTG+AGG | - | chr3_1:12881728-12881747 | Msa0349360:intron | 40.0% |
| ! | CTCAACCAGAACTTGTTCAT+TGG | + | chr3_1:12882002-12882021 | None:intergenic | 40.0% |
| GGTTGAGTTTCTTTGAGTAC+TGG | - | chr3_1:12882015-12882034 | Msa0349360:intron | 40.0% | |
| AAGAGGAAATGAGAGTAAGG+AGG | - | chr3_1:12882082-12882101 | Msa0349360:intron | 40.0% | |
| TGAGGAAATGTGAGAATGTG+AGG | - | chr3_1:12882113-12882132 | Msa0349360:intron | 40.0% | |
| GAGGAAATGTGAGAATGTGA+GGG | - | chr3_1:12882114-12882133 | Msa0349360:intron | 40.0% | |
| AGGTTGAATGGTGAAAAGGA+CGG | - | chr3_1:12882306-12882325 | Msa0349360:intron | 40.0% | |
| ! | AATGACGATTTTACCCGCAA+CGG | + | chr3_1:12882455-12882474 | None:intergenic | 40.0% |
| TGACCCAAGATAATCTGTCT+CGG | + | chr3_1:12882571-12882590 | None:intergenic | 40.0% | |
| CAGATTATCTTGGGTCAAGT+TGG | - | chr3_1:12882574-12882593 | Msa0349360:intron | 40.0% | |
| ATCAAACCCACCAATATGTG+TGG | - | chr3_1:12882884-12882903 | Msa0349360:intron | 40.0% | |
| !!! | ATTTTTTTTTTTGGGGGGGG+GGG | + | chr3_1:12883052-12883071 | None:intergenic | 40.0% |
| TGAAAATAGTGGTGGTCTCT+TGG | + | chr3_1:12883190-12883209 | None:intergenic | 40.0% | |
| !! | AATTGAGCTTTGGATCCTCA+GGG | + | chr3_1:12883220-12883239 | None:intergenic | 40.0% |
| !! | TAATTGAGCTTTGGATCCTC+AGG | + | chr3_1:12883221-12883240 | None:intergenic | 40.0% |
| TCTCACTGCCTCAATCTATT+AGG | + | chr3_1:12883284-12883303 | None:intergenic | 40.0% | |
| TGAGGCTCAGAAATCCAAAG+GGG | + | chr3_1:12879401-12879420 | None:intergenic | 45.0% | |
| GATGAGGCTCAGAAATCCAA+AGG | + | chr3_1:12879403-12879422 | None:intergenic | 45.0% | |
| TCACTTATCACGAACACCAG+CGG | + | chr3_1:12879705-12879724 | None:intergenic | 45.0% | |
| ! | GATTTGAAACAATGGTCGGG+TGG | - | chr3_1:12880295-12880314 | Msa0349360:intron | 45.0% |
| AACCTCAGAGGTTGAAGGTT+CGG | - | chr3_1:12880349-12880368 | Msa0349360:intron | 45.0% | |
| !! | AGGGGAGAGTATCATTCACT+TGG | - | chr3_1:12880490-12880509 | Msa0349360:intron | 45.0% |
| !! | GGGGAGAGTATCATTCACTT+GGG | - | chr3_1:12880491-12880510 | Msa0349360:intron | 45.0% |
| CATATCGATCCACTGGAACT+TGG | + | chr3_1:12880565-12880584 | None:intergenic | 45.0% | |
| AGTTCCAGTGGATCGATATG+CGG | - | chr3_1:12880565-12880584 | Msa0349360:intron | 45.0% | |
| AACTAGTGACGATCTTCTGG+CGG | + | chr3_1:12880636-12880655 | None:intergenic | 45.0% | |
| CCTAACTAGTGACGATCTTC+TGG | + | chr3_1:12880639-12880658 | None:intergenic | 45.0% | |
| CCAGAAGATCGTCACTAGTT+AGG | - | chr3_1:12880636-12880655 | Msa0349360:intron | 45.0% | |
| GATCGTCACTAGTTAGGGTA+AGG | - | chr3_1:12880642-12880661 | Msa0349360:intron | 45.0% | |
| ! | GACCTCATTTTGTTGGCACT+TGG | - | chr3_1:12880827-12880846 | Msa0349360:intron | 45.0% |
| ATCTAAGTGCCAACGGAATG+AGG | + | chr3_1:12881063-12881082 | None:intergenic | 45.0% | |
| AAGAAAGGAATCGAGGCAGA+TGG | - | chr3_1:12881912-12881931 | Msa0349360:intron | 45.0% | |
| CCTTCTTGTAAAGCTCCTCA+AGG | + | chr3_1:12881938-12881957 | None:intergenic | 45.0% | |
| CCTTGAGGAGCTTTACAAGA+AGG | - | chr3_1:12881935-12881954 | Msa0349360:intron | 45.0% | |
| AGTAAGGAGGAGAGAATGTG+AGG | - | chr3_1:12882095-12882114 | Msa0349360:intron | 45.0% | |
| !!! | TTTTTTTTTTTGGGGGGGGG+GGG | + | chr3_1:12883051-12883070 | None:intergenic | 45.0% |
| GATCATCGGCAGTAAGTAGT+AGG | + | chr3_1:12883168-12883187 | None:intergenic | 45.0% | |
| !!! | TTGAATTTTATAAATTTTTT+AGG | - | chr3_1:12880180-12880199 | Msa0349360:intron | 5.0% |
| !!! | TGAATTTTATAAATTTTTTA+GGG | - | chr3_1:12880181-12880200 | Msa0349360:intron | 5.0% |
| !! | TAAAATAAAAACTAAAATAA+AGG | - | chr3_1:12881557-12881576 | Msa0349360:intron | 5.0% |
| !! | AAACAAAAATAAAATTAAAA+GGG | + | chr3_1:12882616-12882635 | None:intergenic | 5.0% |
| !!! | TTAAATTTTCTATTTTTTTT+TGG | - | chr3_1:12882843-12882862 | Msa0349360:intron | 5.0% |
| !! | TTTATTTATAAGAATAATAA+TGG | - | chr3_1:12883409-12883428 | Msa0349360:five_prime_UTR | 5.0% |
| ! | AATGACCCTTTTACCCCCAG+CGG | - | chr3_1:12879613-12879632 | Msa0349360:intron | 50.0% |
| AACGGTAGTTAACAGCCGCT+GGG | + | chr3_1:12879631-12879650 | None:intergenic | 50.0% | |
| AGCGGCTGTTAACTACCGTT+GGG | - | chr3_1:12879631-12879650 | Msa0349360:intron | 50.0% | |
| ATGGGTGAGTGTCTGGATTG+TGG | + | chr3_1:12879736-12879755 | None:intergenic | 50.0% | |
| CGAGCGTCAGACGTTTATAC+CGG | + | chr3_1:12880467-12880486 | None:intergenic | 50.0% | |
| GTTCCAGTGGATCGATATGC+GGG | - | chr3_1:12880566-12880585 | Msa0349360:intron | 50.0% | |
| TTCAAACTTGCCAAACGGCC+AGG | - | chr3_1:12880709-12880728 | Msa0349360:intron | 50.0% | |
| !! | GGCGTCTTACCTCTGAAATG+GGG | + | chr3_1:12880958-12880977 | None:intergenic | 50.0% |
| !! | GGGCGTCTTACCTCTGAAAT+GGG | + | chr3_1:12880959-12880978 | None:intergenic | 50.0% |
| CATTTCAGAGGTAAGACGCC+CGG | - | chr3_1:12880958-12880977 | Msa0349360:intron | 50.0% | |
| ATTTCAGAGGTAAGACGCCC+GGG | - | chr3_1:12880959-12880978 | Msa0349360:intron | 50.0% | |
| !! | GGTATCGATGTGTCAAGGTC+TGG | - | chr3_1:12881036-12881055 | Msa0349360:intron | 50.0% |
| TGGGCCGAGACAGATTATCT+TGG | - | chr3_1:12882564-12882583 | Msa0349360:intron | 50.0% | |
| GGGCCGAGACAGATTATCTT+GGG | - | chr3_1:12882565-12882584 | Msa0349360:intron | 50.0% | |
| !!! | TTTTTTTTTTGGGGGGGGGG+GGG | + | chr3_1:12883050-12883069 | None:intergenic | 50.0% |
| GTAGTAGGCGTCCATCTTAG+AGG | + | chr3_1:12883153-12883172 | None:intergenic | 50.0% | |
| GTGGTGGTCTCTTGGATCAT+CGG | + | chr3_1:12883182-12883201 | None:intergenic | 50.0% | |
| !! | CTACAGCAAGGGTACCCCTT+TGG | - | chr3_1:12879384-12879403 | Msa0349360:three_prime_UTR | 55.0% |
| AACAGCCGCTGGGGGTAAAA+GGG | + | chr3_1:12879621-12879640 | None:intergenic | 55.0% | |
| TAACAGCCGCTGGGGGTAAA+AGG | + | chr3_1:12879622-12879641 | None:intergenic | 55.0% | |
| ACGGTAGTTAACAGCCGCTG+GGG | + | chr3_1:12879630-12879649 | None:intergenic | 55.0% | |
| CAACGGTAGTTAACAGCCGC+TGG | + | chr3_1:12879632-12879651 | None:intergenic | 55.0% | |
| CAGCGGCTGTTAACTACCGT+TGG | - | chr3_1:12879630-12879649 | Msa0349360:intron | 55.0% | |
| GCGGCTGTTAACTACCGTTG+GGG | - | chr3_1:12879632-12879651 | Msa0349360:intron | 55.0% | |
| AGCCAGCGGTTGTTAACAGC+CGG | + | chr3_1:12879664-12879683 | None:intergenic | 55.0% | |
| !! | TAACAACCGCTGGCTTCCAG+CGG | - | chr3_1:12879669-12879688 | Msa0349360:intron | 55.0% |
| TAATTGCCGCTGGAAGCCAG+CGG | + | chr3_1:12879678-12879697 | None:intergenic | 55.0% | |
| !! | GGTGATGATGGGTGAGTGTC+TGG | + | chr3_1:12879743-12879762 | None:intergenic | 55.0% |
| CGGAGAACCTCAGAGGTTGA+AGG | - | chr3_1:12880344-12880363 | Msa0349360:intron | 55.0% | |
| CACCGAACCTTCAACCTCTG+AGG | + | chr3_1:12880354-12880373 | None:intergenic | 55.0% | |
| !! | TGTCTCTGGGGTTGAGTGCT+TGG | + | chr3_1:12880425-12880444 | None:intergenic | 55.0% |
| TCAACCCCAGAGACACAACG+AGG | - | chr3_1:12880430-12880449 | Msa0349360:intron | 55.0% | |
| CAACCCCAGAGACACAACGA+GGG | - | chr3_1:12880431-12880450 | Msa0349360:intron | 55.0% | |
| TGCACCCTCGTTGTGTCTCT+GGG | + | chr3_1:12880438-12880457 | None:intergenic | 55.0% | |
| TTGCACCCTCGTTGTGTCTC+TGG | + | chr3_1:12880439-12880458 | None:intergenic | 55.0% | |
| ! | CAACGAGGGTGCAAAACGTC+CGG | - | chr3_1:12880445-12880464 | Msa0349360:intron | 55.0% |
| TAAACGTCTGACGCTCGACG+AGG | - | chr3_1:12880470-12880489 | Msa0349360:intron | 55.0% | |
| AAACGTCTGACGCTCGACGA+GGG | - | chr3_1:12880471-12880490 | Msa0349360:intron | 55.0% | |
| TCACCCGCATATCGATCCAC+TGG | + | chr3_1:12880572-12880591 | None:intergenic | 55.0% | |
| TGAGCGAAATGCTTGAGGCC+TGG | + | chr3_1:12880730-12880749 | None:intergenic | 55.0% | |
| ! | CGGGCGTCTTACCTCTGAAA+TGG | + | chr3_1:12880960-12880979 | None:intergenic | 55.0% |
| AGGTCTGGACCTCATTCCGT+TGG | - | chr3_1:12881051-12881070 | Msa0349360:intron | 55.0% | |
| ! | AATCGAGGCAGATGGCCTTG+AGG | - | chr3_1:12881920-12881939 | Msa0349360:intron | 55.0% |
| GCATCCTAGAACGCACGTAG+CGG | - | chr3_1:12882330-12882349 | Msa0349360:intron | 55.0% | |
| CTCCAGCGGTTGTTAACTGC+CGG | - | chr3_1:12882374-12882393 | Msa0349360:intron | 55.0% | |
| ACTGCCGGCGCATTAACCAA+CGG | - | chr3_1:12882419-12882438 | Msa0349360:intron | 55.0% | |
| ! | ACAGCCGTTGGTTAATGCGC+CGG | + | chr3_1:12882426-12882445 | None:intergenic | 55.0% |
| CAACGGCAGTTAACAGCCGT+TGG | + | chr3_1:12882438-12882457 | None:intergenic | 55.0% | |
| ACGGCTGTTAACTGCCGTTG+CGG | - | chr3_1:12882438-12882457 | Msa0349360:intron | 55.0% | |
| !!! | TTTTTTTTTGGGGGGGGGGG+GGG | + | chr3_1:12883049-12883068 | None:intergenic | 55.0% |
| CGGTAGTTAACAGCCGCTGG+GGG | + | chr3_1:12879629-12879648 | None:intergenic | 60.0% | |
| ACTACCGTTGGGGTATGCGC+CGG | - | chr3_1:12879642-12879661 | Msa0349360:intron | 60.0% | |
| CAGCGGCTGTTAATTGCCGC+TGG | + | chr3_1:12879688-12879707 | None:intergenic | 60.0% | |
| CAGCGGCAATTAACAGCCGC+TGG | - | chr3_1:12879686-12879705 | Msa0349360:intron | 60.0% | |
| TCAACGGCGGAGAACCTCAG+AGG | - | chr3_1:12880337-12880356 | Msa0349360:intron | 60.0% | |
| GCACCCTCGTTGTGTCTCTG+GGG | + | chr3_1:12880437-12880456 | None:intergenic | 60.0% | |
| AACGTCTGACGCTCGACGAG+GGG | - | chr3_1:12880472-12880491 | Msa0349360:intron | 60.0% | |
| ! | GGGAGCACACCAAGTTCCAG+TGG | - | chr3_1:12880553-12880572 | Msa0349360:intron | 60.0% |
| ATGCTTGAGGCCTGGCCGTT+TGG | + | chr3_1:12880722-12880741 | None:intergenic | 60.0% | |
| ACTGCCGCTACGTGCGTTCT+AGG | + | chr3_1:12882337-12882356 | None:intergenic | 60.0% | |
| TAGCGGCAGTTAACTGCCGC+TGG | - | chr3_1:12882347-12882366 | Msa0349360:intron | 60.0% | |
| CGGCAGTTAACAACCGCTGG+AGG | + | chr3_1:12882376-12882395 | None:intergenic | 60.0% | |
| CAGCGGCAGTTAACAACCGC+TGG | + | chr3_1:12882379-12882398 | None:intergenic | 60.0% | |
| CAGCGGTTGTTAACTGCCGC+TGG | - | chr3_1:12882377-12882396 | Msa0349360:intron | 60.0% | |
| CGGCAGTTAACAACCGCTGG+AGG | + | chr3_1:12882376-12882395 | None:intergenic | 60.0% | |
| CGGCTGTTAACTGCCGTTGC+GGG | - | chr3_1:12882439-12882458 | Msa0349360:intron | 60.0% | |
| !!! | TTTTTTTTGGGGGGGGGGGG+GGG | + | chr3_1:12883048-12883067 | None:intergenic | 60.0% |
| ACAGCCGGCGCATACCCCAA+CGG | + | chr3_1:12879649-12879668 | None:intergenic | 65.0% | |
| ! | CGCCGGCTGTTAACAACCGC+TGG | - | chr3_1:12879659-12879678 | Msa0349360:intron | 65.0% |
| CAACCGCTGGAGGCTTCCAG+CGG | + | chr3_1:12882366-12882385 | None:intergenic | 65.0% | |
| CAACCGCTGGAGGCTACCAG+CGG | + | chr3_1:12882396-12882415 | None:intergenic | 65.0% | |
| CGCCGGCAGTTAACAACCGC+TGG | + | chr3_1:12882409-12882428 | None:intergenic | 65.0% | |
| !!! | TTTTTTTGGGGGGGGGGGGG+GGG | + | chr3_1:12883047-12883066 | None:intergenic | 65.0% |
| CTGCCGCTGGAAGCCTCCAG+CGG | - | chr3_1:12882360-12882379 | Msa0349360:intron | 70.0% | |
| CTGCCGCTGGTAGCCTCCAG+CGG | - | chr3_1:12882390-12882409 | Msa0349360:intron | 70.0% | |
| !!! | TTTTTTGGGGGGGGGGGGGG+GGG | + | chr3_1:12883046-12883065 | None:intergenic | 70.0% |
| !! | TTTTTGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883045-12883064 | None:intergenic | 75.0% |
| !!! | TTTTGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883044-12883063 | None:intergenic | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883043-12883062 | None:intergenic | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883042-12883061 | None:intergenic | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | + | chr3_1:12883041-12883060 | None:intergenic | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 12879269 | 12883446 | 12879269 | ID=Msa0349360;Name=Msa0349360 |
| chr3_1 | mRNA | 12879269 | 12883446 | 12879269 | ID=Msa0349360-mRNA-1;Parent=Msa0349360;Name=Msa0349360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|0|0.5|2|224|60 |
| chr3_1 | exon | 12879269 | 12879557 | 12879269 | ID=Msa0349360-mRNA-1:exon:3293;Parent=Msa0349360-mRNA-1 |
| chr3_1 | exon | 12883284 | 12883446 | 12883284 | ID=Msa0349360-mRNA-1:exon:3292;Parent=Msa0349360-mRNA-1 |
| chr3_1 | five_prime_UTR | 12883402 | 12883446 | 12883402 | ID=Msa0349360-mRNA-1:five_prime_utr;Parent=Msa0349360-mRNA-1 |
| chr3_1 | CDS | 12883284 | 12883401 | 12883284 | ID=Msa0349360-mRNA-1:cds;Parent=Msa0349360-mRNA-1 |
| chr3_1 | CDS | 12879493 | 12879557 | 12879493 | ID=Msa0349360-mRNA-1:cds;Parent=Msa0349360-mRNA-1 |
| chr3_1 | three_prime_UTR | 12879269 | 12879492 | 12879269 | ID=Msa0349360-mRNA-1:three_prime_utr;Parent=Msa0349360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
