AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0550810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550810 MtrunA17_Chr4g0035761 96.013 301 8 3 1 298 1 300 0.0 578
Msa0550810 MtrunA17_Chr4g0035791 80.333 300 54 4 1 298 1 297 1.03e-162 464
Msa0550810 MtrunA17_Chr4g0035811 81.544 298 49 4 1 298 34 325 1.42e-161 462
Msa0550810 MtrunA17_Chr4g0035751 64.094 298 95 4 1 298 1 286 7.89e-126 369
Msa0550810 MtrunA17_Chr4g0035741 64.286 294 88 4 11 298 17 299 1.70e-124 366
Msa0550810 MtrunA17_Chr5g0448591 26.400 250 166 7 63 297 67 313 5.02e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0550810 AT2G21340.1 59.567 277 100 2 22 298 44 308 1.02e-109 329
Msa0550810 AT4G39030.1 75.743 202 49 0 97 298 90 291 1.17e-106 321
Msa0550810 AT2G21340.2 58.845 277 99 3 22 298 44 305 2.45e-106 320
Msa0550810 AT2G38330.1 29.255 188 115 4 124 297 95 278 2.28e-12 67.8

Find 72 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGACCTGCTATTGGTCTT+TGG 0.222999 4_1:+46368010 Msa0550810:CDS
CTACTGTTCACAATGTTATT+TGG 0.227670 4_1:+46369336 Msa0550810:CDS
ATGGGATTGCTGGGGCTGCT+TGG 0.230964 4_1:+46370515 Msa0550810:CDS
TCAATTGAACTTGCTGCTTT+AGG 0.260915 4_1:+46368087 Msa0550810:CDS
CTGTGCAGATATTTAGACTA+TGG 0.261645 4_1:+46370496 Msa0550810:CDS
GCTGTTGCTAGTATTATAAA+TGG 0.276859 4_1:+46370457 Msa0550810:CDS
GTCGATTGCTACGTCGAATA+TGG 0.279146 4_1:+46368256 Msa0550810:CDS
AAACCTCGCTGATTTGTTCT+TGG 0.286580 4_1:-46367903 None:intergenic
TGGGATTGCTGGGGCTGCTT+GGG 0.289681 4_1:+46370516 Msa0550810:CDS
GCATGGCCTTCTTTACTTGT+TGG 0.314006 4_1:+46369863 Msa0550810:CDS
TAGCAACAGCCAAAGCCTTC+AGG 0.320978 4_1:-46370444 None:intergenic
TTGGGGACCCCTGAAGGCTT+TGG 0.326543 4_1:+46370435 Msa0550810:CDS
TACTTGTTGAACAGAGTATA+TGG 0.327392 4_1:+46367959 Msa0550810:CDS
TGCTACTGCACTTGCTAAAC+AGG 0.330445 4_1:+46368280 Msa0550810:CDS
CTCATTGATACTGCTGTTGT+TGG 0.336581 4_1:+46368054 Msa0550810:CDS
AAGGAAATAGTATTGTTTAC+TGG 0.339822 4_1:+46367991 Msa0550810:CDS
GCCTTCTTTACTTGTTGGAT+TGG 0.344744 4_1:+46369868 Msa0550810:CDS
TTGTTTACTGGACCTGCTAT+TGG 0.364742 4_1:+46368003 Msa0550810:CDS
TATTTAGACTATGGGATTGC+TGG 0.372520 4_1:+46370505 Msa0550810:CDS
TTTGAAGTACGCGAGGTGTT+AGG 0.390174 4_1:-46367852 None:intergenic
TCGAGCCGGAACCGTCGCTT+CGG 0.394110 4_1:+46367826 Msa0550810:CDS
GCTATTGGTCTTTGGTTATG+TGG 0.403668 4_1:+46368018 Msa0550810:CDS
TGGGGCTGCTTGGGCTACAT+TGG 0.406685 4_1:+46370525 Msa0550810:CDS
CGAGCCGGAACCGTCGCTTC+GGG 0.407801 4_1:+46367827 Msa0550810:CDS
TCTTGGTATGAAAGACTCTT+GGG 0.418828 4_1:+46370417 Msa0550810:CDS
GTCTTGGTATGAAAGACTCT+TGG 0.428478 4_1:+46370416 Msa0550810:intron
GAGGTAAGCGGCGGTTTGAA+TGG 0.431197 4_1:-46367741 None:intergenic
GCTAGTATTATAAATGGAAT+TGG 0.434795 4_1:+46370463 Msa0550810:CDS
TGTAATAATGCGTTGGTTTG+TGG 0.437933 4_1:-46367800 None:intergenic
GGAACCCGAAGCGACGGTTC+CGG 0.458074 4_1:-46367831 None:intergenic
TTGGTGTTAGATTCGAGGAT+TGG 0.460274 4_1:+46369841 Msa0550810:intron
TGTGCAGATATTTAGACTAT+GGG 0.473272 4_1:+46370497 Msa0550810:CDS
GTTTGTGGAATGGATGGTGG+TGG 0.477193 4_1:-46367785 None:intergenic
AGCAACAGCCAAAGCCTTCA+GGG 0.480715 4_1:-46370443 None:intergenic
TGGTGGTGGTGTTGTTGAGA+AGG 0.500729 4_1:-46367771 None:intergenic
AGGTAAGCGGCGGTTTGAAT+GGG 0.507496 4_1:-46367740 None:intergenic
ATTTAGACTATGGGATTGCT+GGG 0.507677 4_1:+46370506 Msa0550810:CDS
TAATGCGTTGGTTTGTGGAA+TGG 0.514924 4_1:-46367795 None:intergenic
CATTGGATTAGTATGTGGCT+TGG 0.515356 4_1:+46369308 Msa0550810:CDS
ACCAATCCAACAAGTAAAGA+AGG 0.516299 4_1:-46369869 None:intergenic
AGACTCTTGGGGACCCCTGA+AGG 0.519624 4_1:+46370429 Msa0550810:CDS
GGTGGTGGTGTTGTTGAGAA+GGG 0.519739 4_1:-46367770 None:intergenic
GAGTATATGGATTCAGATGA+AGG 0.524134 4_1:+46367972 Msa0550810:CDS
TGCAGCTAATACTTATGTCC+AGG 0.527820 4_1:+46369534 Msa0550810:CDS
GGTACTAAATGTACATTTGT+CGG 0.536146 4_1:-46369511 None:intergenic
TTGGTTTGTGGAATGGATGG+TGG 0.538761 4_1:-46367788 None:intergenic
GATTGGTTGCTCAGAGTGCA+AGG 0.549245 4_1:+46369885 Msa0550810:CDS
TTGAATGGGAAATGAGGTTG+CGG 0.557483 4_1:-46367726 None:intergenic
GCGTTGGTTTGTGGAATGGA+TGG 0.560812 4_1:-46367791 None:intergenic
GGCGGTTTGAATGGGAAATG+AGG 0.564980 4_1:-46367732 None:intergenic
TATGTTTGTGTAGGATAGGG+AGG 0.568560 4_1:+46369254 Msa0550810:intron
GAAGCGACGGTTCCGGCTCG+AGG 0.572994 4_1:-46367824 None:intergenic
TTTGGTGCGACAACGCTCGC+AGG 0.573276 4_1:+46369354 Msa0550810:CDS
TCGAGGATGTAATAATGCGT+TGG 0.580401 4_1:-46367807 None:intergenic
GTTAGATTCGAGGATTGGCA+TGG 0.588204 4_1:+46369846 Msa0550810:intron
TGGACATAAGTATTAGCTGC+AGG 0.592382 4_1:-46369532 None:intergenic
GATTGAAATGCAGTGAGAGT+TGG 0.613518 4_1:-46367681 None:intergenic
GATACTGCTGTTGTTGGTCA+AGG 0.613645 4_1:+46368060 Msa0550810:CDS
GTGTTAGGAACCCGAAGCGA+CGG 0.617326 4_1:-46367837 None:intergenic
ACAAGAACAAGAAGAAGTGA+AGG 0.617515 4_1:+46367933 Msa0550810:CDS
AAATGAGGTTGCGGTTATCG+AGG 0.638411 4_1:-46367717 None:intergenic
CATAACCAAAGACCAATAGC+AGG 0.639786 4_1:-46368015 None:intergenic
GCATTATTACATCCTCGAGC+CGG 0.659051 4_1:+46367812 Msa0550810:CDS
GCAACAGCCAAAGCCTTCAG+GGG 0.673686 4_1:-46370442 None:intergenic
CTTGGTATGAAAGACTCTTG+GGG 0.674911 4_1:+46370418 Msa0550810:CDS
TTTAGACTATGGGATTGCTG+GGG 0.683376 4_1:+46370507 Msa0550810:CDS
GAAGGGAATGAAGAGGTAAG+CGG 0.691837 4_1:-46367753 None:intergenic
GGGAATGAAGAGGTAAGCGG+CGG 0.697962 4_1:-46367750 None:intergenic
TTGTTGAGAAGGGAATGAAG+AGG 0.725276 4_1:-46367760 None:intergenic
GTATCAATGAGACTCATCAA+CGG 0.734956 4_1:-46368042 None:intergenic
GGTTATCGAGGTGAAGAGTG+TGG 0.755430 4_1:-46367705 None:intergenic
ACACCAAGAACAAATCAGCG+AGG 0.790634 4_1:+46367900 Msa0550810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTTCTTTTTCTTA+TGG + chr4_1:46368610-46368629 Msa0550810:intron 10.0%
!!! TTTTATTTTCTTTTTCTTAT+GGG + chr4_1:46368611-46368630 Msa0550810:intron 10.0%
!!! TCTTTTAATAGTAAATATAA+AGG + chr4_1:46369673-46369692 Msa0550810:intron 10.0%
!!! TTGTAAATATTCTAAGTTTT+TGG + chr4_1:46368441-46368460 Msa0550810:intron 15.0%
!! ATTCATACAATAAAATAAGA+CGG + chr4_1:46369124-46369143 Msa0550810:intron 15.0%
!! AGAAATCATAAAACAATTTA+TGG + chr4_1:46369622-46369641 Msa0550810:intron 15.0%
!!! TCAAATTTTATTAAGTAACA+CGG - chr4_1:46370119-46370138 None:intergenic 15.0%
!!! CATTTTCAATTAAATATAAG+AGG - chr4_1:46370217-46370236 None:intergenic 15.0%
!! GTCAGTTTAAATAAAAATTT+AGG - chr4_1:46370258-46370277 None:intergenic 15.0%
!! ATTAGTAATATCATAACTAT+TGG + chr4_1:46370348-46370367 Msa0550810:intron 15.0%
!! TTAGTAATATCATAACTATT+GGG + chr4_1:46370349-46370368 Msa0550810:intron 15.0%
!!! TTTTGTATACCATAAGAAAA+GGG - chr4_1:46368320-46368339 None:intergenic 20.0%
!!! ATTTTGTATACCATAAGAAA+AGG - chr4_1:46368321-46368340 None:intergenic 20.0%
!!! TTTTCTATCCAATAAGAAAA+GGG - chr4_1:46368655-46368674 None:intergenic 20.0%
!!! ATTTTCTATCCAATAAGAAA+AGG - chr4_1:46368656-46368675 None:intergenic 20.0%
!! AAATTAATGATATAGAAGAG+AGG + chr4_1:46368754-46368773 Msa0550810:intron 20.0%
!! AATAATATCCAAAAGTTTGA+TGG - chr4_1:46369154-46369173 None:intergenic 20.0%
!!! ACAATCTTAATTTGAATTGA+AGG - chr4_1:46369581-46369600 None:intergenic 20.0%
!! AGTAAATATAAAGGTTTGTA+TGG + chr4_1:46369682-46369701 Msa0550810:intron 20.0%
!! ACATATATTGAAATTGATCA+AGG + chr4_1:46369771-46369790 Msa0550810:intron 20.0%
!! CATATATTGAAATTGATCAA+GGG + chr4_1:46369772-46369791 Msa0550810:intron 20.0%
!! TGAACATATGTTTATAAGTA+GGG + chr4_1:46369968-46369987 Msa0550810:intron 20.0%
! AAGGAAATAGTATTGTTTAC+TGG + chr4_1:46367991-46368010 Msa0550810:CDS 25.0%
!!! TACTGTTTTTTGCGATTATT+TGG + chr4_1:46368214-46368233 Msa0550810:CDS 25.0%
!!! ACTGTTTTTTGCGATTATTT+GGG + chr4_1:46368215-46368234 Msa0550810:CDS 25.0%
! TTTGTATACCATAAGAAAAG+GGG - chr4_1:46368319-46368338 None:intergenic 25.0%
! TCCATTAACTTATCTGTTAT+CGG - chr4_1:46368576-46368595 None:intergenic 25.0%
!! TTTTATTCCCCTTTTCTTAT+TGG + chr4_1:46368644-46368663 Msa0550810:intron 25.0%
! TTTCTATCCAATAAGAAAAG+GGG - chr4_1:46368654-46368673 None:intergenic 25.0%
! ATATTTACTCATGAAAAGCA+GGG - chr4_1:46369237-46369256 None:intergenic 25.0%
! ATGAGTAAATATGTTTGTGT+AGG + chr4_1:46369245-46369264 Msa0550810:intron 25.0%
! TAAATATGTTTGTGTAGGAT+AGG + chr4_1:46369250-46369269 Msa0550810:intron 25.0%
! AAATATGTTTGTGTAGGATA+GGG + chr4_1:46369251-46369270 Msa0550810:intron 25.0%
! ATTACTGTTATCCCATAAAA+GGG - chr4_1:46369411-46369430 None:intergenic 25.0%
! AATTACTGTTATCCCATAAA+AGG - chr4_1:46369412-46369431 None:intergenic 25.0%
! GTAATTCACTAATGCATAAA+TGG + chr4_1:46369426-46369445 Msa0550810:intron 25.0%
!! AAAGCAGAATCTTATTTGAA+AGG - chr4_1:46369735-46369754 None:intergenic 25.0%
!! CACACTGAATTAATTTCTTT+TGG + chr4_1:46369822-46369841 Msa0550810:intron 25.0%
! CTACTTATAAACATATGTTC+AGG - chr4_1:46369969-46369988 None:intergenic 25.0%
! CTGAACATATGTTTATAAGT+AGG + chr4_1:46369967-46369986 Msa0550810:intron 25.0%
! GAACATATGTTTATAAGTAG+GGG + chr4_1:46369969-46369988 Msa0550810:intron 25.0%
! TGAAGATATGTTTATTAGTG+GGG - chr4_1:46370065-46370084 None:intergenic 25.0%
! CTGAAGATATGTTTATTAGT+GGG - chr4_1:46370066-46370085 None:intergenic 25.0%
!! TATATACTGTTTTACACATC+TGG + chr4_1:46370164-46370183 Msa0550810:intron 25.0%
! GCTAGTATTATAAATGGAAT+TGG + chr4_1:46370463-46370482 Msa0550810:CDS 25.0%
! TACTTGTTGAACAGAGTATA+TGG + chr4_1:46367959-46367978 Msa0550810:CDS 30.0%
TAATGTATGTGTGATGTGTA+TGG + chr4_1:46368162-46368181 Msa0550810:intron 30.0%
! TCTTTATTCCCCTTTTCTTA+TGG + chr4_1:46368308-46368327 Msa0550810:intron 30.0%
TGAACTTATAATTGTGTGAG+TGG + chr4_1:46368360-46368379 Msa0550810:intron 30.0%
!! TTTTACATTGGTTGTGAATG+AGG + chr4_1:46368387-46368406 Msa0550810:intron 30.0%
TATATCCATTATCCGCTATA+AGG - chr4_1:46368552-46368571 None:intergenic 30.0%
ACCGATAACAGATAAGTTAA+TGG + chr4_1:46368572-46368591 Msa0550810:intron 30.0%
TGTATTTGTAAACTGAGAGT+TGG + chr4_1:46368687-46368706 Msa0550810:intron 30.0%
CTCATATGTCTAATGTTCTA+AGG + chr4_1:46368780-46368799 Msa0550810:intron 30.0%
!! TAATGTTCTAAGGTGTTTAG+TGG + chr4_1:46368790-46368809 Msa0550810:intron 30.0%
GTTGTCCCTATTATTCTTTA+CGG + chr4_1:46368835-46368854 Msa0550810:intron 30.0%
AGAGTCCGTAAAGAATAATA+GGG - chr4_1:46368843-46368862 None:intergenic 30.0%
TCTTGCATCAAAAGTCTTTA+TGG + chr4_1:46368914-46368933 Msa0550810:intron 30.0%
ATCAAAAGTCTTTATGGTAG+TGG + chr4_1:46368920-46368939 Msa0550810:intron 30.0%
CATATTTACTCATGAAAAGC+AGG - chr4_1:46369238-46369257 None:intergenic 30.0%
!! ATATCTGTCTTGCTTTTCAT+TGG + chr4_1:46369291-46369310 Msa0550810:CDS 30.0%
!!! CTTTTCATTGGATTAGTATG+TGG + chr4_1:46369303-46369322 Msa0550810:CDS 30.0%
CTACTGTTCACAATGTTATT+TGG + chr4_1:46369336-46369355 Msa0550810:CDS 30.0%
TTGAACAATTCATCAGTCAT+GGG - chr4_1:46369464-46369483 None:intergenic 30.0%
ATTGAACAATTCATCAGTCA+TGG - chr4_1:46369465-46369484 None:intergenic 30.0%
GGTACTAAATGTACATTTGT+CGG - chr4_1:46369514-46369533 None:intergenic 30.0%
GTAATCAGAAGAAAAATACC+TGG - chr4_1:46369555-46369574 None:intergenic 30.0%
! TCTTACAAGCCAATTTTGTA+AGG + chr4_1:46370001-46370020 Msa0550810:intron 30.0%
CAAACTCATCCTTACAAAAT+TGG - chr4_1:46370013-46370032 None:intergenic 30.0%
! CAATTTTGTAAGGATGAGTT+TGG + chr4_1:46370011-46370030 Msa0550810:intron 30.0%
GAAGATATGTTTATTAGTGG+GGG - chr4_1:46370064-46370083 None:intergenic 30.0%
CCTGAAGATATGTTTATTAG+TGG - chr4_1:46370067-46370086 None:intergenic 30.0%
CCACTAATAAACATATCTTC+AGG + chr4_1:46370064-46370083 Msa0550810:intron 30.0%
TACACATCTGGCTAAAATTT+CGG + chr4_1:46370176-46370195 Msa0550810:intron 30.0%
!! CTTCACATAAGCTATTTTCA+AGG - chr4_1:46370295-46370314 None:intergenic 30.0%
GCTGTTGCTAGTATTATAAA+TGG + chr4_1:46370457-46370476 Msa0550810:CDS 30.0%
TGTGCAGATATTTAGACTAT+GGG + chr4_1:46370497-46370516 Msa0550810:CDS 30.0%
!! TGTAATAATGCGTTGGTTTG+TGG - chr4_1:46367803-46367822 None:intergenic 35.0%
ACAAGAACAAGAAGAAGTGA+AGG + chr4_1:46367933-46367952 Msa0550810:CDS 35.0%
GAGTATATGGATTCAGATGA+AGG + chr4_1:46367972-46367991 Msa0550810:CDS 35.0%
GTATCAATGAGACTCATCAA+CGG - chr4_1:46368045-46368064 None:intergenic 35.0%
!! TCAATTGAACTTGCTGCTTT+AGG + chr4_1:46368087-46368106 Msa0550810:CDS 35.0%
! TGTGTGATGTGTATGGATTT+TGG + chr4_1:46368169-46368188 Msa0550810:intron 35.0%
!!! ATTTTGGTTTCTACATGAGC+AGG + chr4_1:46368185-46368204 Msa0550810:intron 35.0%
TAATCGCAAAAAACAGTAGC+AGG - chr4_1:46368212-46368231 None:intergenic 35.0%
!!! GTGAGTGGTTAGTTTTACAT+TGG + chr4_1:46368375-46368394 Msa0550810:intron 35.0%
TACTCATTATCAGCCAATGT+GGG - chr4_1:46368735-46368754 None:intergenic 35.0%
TTACTCATTATCAGCCAATG+TGG - chr4_1:46368736-46368755 None:intergenic 35.0%
GAGAGTCCGTAAAGAATAAT+AGG - chr4_1:46368844-46368863 None:intergenic 35.0%
ATTCTCCCATCAAGTTAACA+CGG - chr4_1:46368885-46368904 None:intergenic 35.0%
! ACGGAAAACCATCAAACTTT+TGG + chr4_1:46369143-46369162 Msa0550810:intron 35.0%
!!! ATGCCTTTTTCAGCTTTTAC+TGG + chr4_1:46369487-46369506 Msa0550810:intron 35.0%
AGTGTGACTAAATCAAGTAG+AGG - chr4_1:46369808-46369827 None:intergenic 35.0%
!!! TTCTTTTGGTGTTAGATTCG+AGG + chr4_1:46369836-46369855 Msa0550810:intron 35.0%
ACCAATCCAACAAGTAAAGA+AGG - chr4_1:46369872-46369891 None:intergenic 35.0%
CATATGTTTATAAGTAGGGG+AGG + chr4_1:46369972-46369991 Msa0550810:intron 35.0%
!! CAAAATTGGCTTGTAAGACA+AGG - chr4_1:46369999-46370018 None:intergenic 35.0%
GGTCATATCTCATCCAATAT+AGG + chr4_1:46370085-46370104 Msa0550810:intron 35.0%
ATAAGAGGCAGATCATAACA+CGG - chr4_1:46370202-46370221 None:intergenic 35.0%
TCTTGGTATGAAAGACTCTT+GGG + chr4_1:46370417-46370436 Msa0550810:CDS 35.0%
CTGTGCAGATATTTAGACTA+TGG + chr4_1:46370496-46370515 Msa0550810:CDS 35.0%
TATTTAGACTATGGGATTGC+TGG + chr4_1:46370505-46370524 Msa0550810:CDS 35.0%
ATTTAGACTATGGGATTGCT+GGG + chr4_1:46370506-46370525 Msa0550810:CDS 35.0%
GATTGAAATGCAGTGAGAGT+TGG - chr4_1:46367684-46367703 None:intergenic 40.0%
TTGAATGGGAAATGAGGTTG+CGG - chr4_1:46367729-46367748 None:intergenic 40.0%
TTGTTGAGAAGGGAATGAAG+AGG - chr4_1:46367763-46367782 None:intergenic 40.0%
!! TAATGCGTTGGTTTGTGGAA+TGG - chr4_1:46367798-46367817 None:intergenic 40.0%
TCGAGGATGTAATAATGCGT+TGG - chr4_1:46367810-46367829 None:intergenic 40.0%
!!! TCTTGATTTTGAAGTACGCG+AGG - chr4_1:46367862-46367881 None:intergenic 40.0%
!! AAACCTCGCTGATTTGTTCT+TGG - chr4_1:46367906-46367925 None:intergenic 40.0%
TTGTTTACTGGACCTGCTAT+TGG + chr4_1:46368003-46368022 Msa0550810:CDS 40.0%
CATAACCAAAGACCAATAGC+AGG - chr4_1:46368018-46368037 None:intergenic 40.0%
!! GCTATTGGTCTTTGGTTATG+TGG + chr4_1:46368018-46368037 Msa0550810:CDS 40.0%
CTCATTGATACTGCTGTTGT+TGG + chr4_1:46368054-46368073 Msa0550810:CDS 40.0%
TTGGTGTAGATGTGCAAGTT+TGG + chr4_1:46368460-46368479 Msa0550810:intron 40.0%
TGGTGTAGATGTGCAAGTTT+GGG + chr4_1:46368461-46368480 Msa0550810:intron 40.0%
GCTGATAAGCTACCTTATAG+CGG + chr4_1:46368537-46368556 Msa0550810:intron 40.0%
!! AGCTACCTTATAGCGGATAA+TGG + chr4_1:46368544-46368563 Msa0550810:intron 40.0%
TTGAGTGTTTAGTCCCACAT+TGG + chr4_1:46368719-46368738 Msa0550810:intron 40.0%
CTCTCCAACAAGTGGTATTT+CGG + chr4_1:46368859-46368878 Msa0550810:intron 40.0%
AACTTGATGGGAGAATGAGA+TGG + chr4_1:46368889-46368908 Msa0550810:intron 40.0%
ACTTGATGGGAGAATGAGAT+GGG + chr4_1:46368890-46368909 Msa0550810:intron 40.0%
!! GTCTTTATGGTAGTGGAGTA+AGG + chr4_1:46368927-46368946 Msa0550810:intron 40.0%
!! TTTATGGTAGTGGAGTAAGG+TGG + chr4_1:46368930-46368949 Msa0550810:intron 40.0%
ACACCCAACAATGACAAAAG+CGG + chr4_1:46369056-46369075 Msa0550810:intron 40.0%
TATGTTTGTGTAGGATAGGG+AGG + chr4_1:46369254-46369273 Msa0550810:intron 40.0%
!! CATTGGATTAGTATGTGGCT+TGG + chr4_1:46369308-46369327 Msa0550810:CDS 40.0%
ACAATTCATCAGTCATGGGT+AGG - chr4_1:46369460-46369479 None:intergenic 40.0%
GGTCCAGTAAAAGCTGAAAA+AGG - chr4_1:46369493-46369512 None:intergenic 40.0%
TGGACATAAGTATTAGCTGC+AGG - chr4_1:46369535-46369554 None:intergenic 40.0%
TGCAGCTAATACTTATGTCC+AGG + chr4_1:46369534-46369553 Msa0550810:CDS 40.0%
!! TTGGTGTTAGATTCGAGGAT+TGG + chr4_1:46369841-46369860 Msa0550810:intron 40.0%
! GCCTTCTTTACTTGTTGGAT+TGG + chr4_1:46369868-46369887 Msa0550810:CDS 40.0%
CAAGACTGCGTGATAAAATG+TGG - chr4_1:46370402-46370421 None:intergenic 40.0%
! CACATTTTATCACGCAGTCT+TGG + chr4_1:46370400-46370419 Msa0550810:intron 40.0%
GTCTTGGTATGAAAGACTCT+TGG + chr4_1:46370416-46370435 Msa0550810:intron 40.0%
CTTGGTATGAAAGACTCTTG+GGG + chr4_1:46370418-46370437 Msa0550810:CDS 40.0%
TTTAGACTATGGGATTGCTG+GGG + chr4_1:46370507-46370526 Msa0550810:CDS 40.0%
AAATGAGGTTGCGGTTATCG+AGG - chr4_1:46367720-46367739 None:intergenic 45.0%
GAAGGGAATGAAGAGGTAAG+CGG - chr4_1:46367756-46367775 None:intergenic 45.0%
!! TTGGTTTGTGGAATGGATGG+TGG - chr4_1:46367791-46367810 None:intergenic 45.0%
GCATTATTACATCCTCGAGC+CGG + chr4_1:46367812-46367831 Msa0550810:CDS 45.0%
! TTTGAAGTACGCGAGGTGTT+AGG - chr4_1:46367855-46367874 None:intergenic 45.0%
ACACCAAGAACAAATCAGCG+AGG + chr4_1:46367900-46367919 Msa0550810:CDS 45.0%
GATACTGCTGTTGTTGGTCA+AGG + chr4_1:46368060-46368079 Msa0550810:CDS 45.0%
GTCGATTGCTACGTCGAATA+TGG + chr4_1:46368256-46368275 Msa0550810:CDS 45.0%
! TGCTACTGCACTTGCTAAAC+AGG + chr4_1:46368280-46368299 Msa0550810:CDS 45.0%
TTTACGGACTCTCCAACAAG+TGG + chr4_1:46368851-46368870 Msa0550810:intron 45.0%
! TTTCGGCCGTGTTAACTTGA+TGG + chr4_1:46368876-46368895 Msa0550810:intron 45.0%
! TTCGGCCGTGTTAACTTGAT+GGG + chr4_1:46368877-46368896 Msa0550810:intron 45.0%
TGATGTGCGAGACTCATAAC+TGG + chr4_1:46368990-46369009 Msa0550810:intron 45.0%
!! CCTCCGCTTTTGTCATTGTT+GGG - chr4_1:46369062-46369081 None:intergenic 45.0%
!! TCCTCCGCTTTTGTCATTGT+TGG - chr4_1:46369063-46369082 None:intergenic 45.0%
CCCATAAAAGGGACACAACT+GGG - chr4_1:46369400-46369419 None:intergenic 45.0%
! CCCAGTTGTGTCCCTTTTAT+GGG + chr4_1:46369397-46369416 Msa0550810:intron 45.0%
TCCCATAAAAGGGACACAAC+TGG - chr4_1:46369401-46369420 None:intergenic 45.0%
! GTTAGATTCGAGGATTGGCA+TGG + chr4_1:46369846-46369865 Msa0550810:intron 45.0%
GCATGGCCTTCTTTACTTGT+TGG + chr4_1:46369863-46369882 Msa0550810:CDS 45.0%
GTGTGTTAAGAGTTCCACCT+TGG + chr4_1:46369933-46369952 Msa0550810:intron 45.0%
AGTTCCACCTTGGATGAGTA+TGG + chr4_1:46369943-46369962 Msa0550810:intron 45.0%
GAAATCCTCACCTTACAAGC+CGG - chr4_1:46370042-46370061 None:intergenic 45.0%
CACGGTTGAGAGTCCTATAT+TGG - chr4_1:46370101-46370120 None:intergenic 45.0%
GGTTATCGAGGTGAAGAGTG+TGG - chr4_1:46367708-46367727 None:intergenic 50.0%
GGCGGTTTGAATGGGAAATG+AGG - chr4_1:46367735-46367754 None:intergenic 50.0%
AGGTAAGCGGCGGTTTGAAT+GGG - chr4_1:46367743-46367762 None:intergenic 50.0%
!! GGTGGTGGTGTTGTTGAGAA+GGG - chr4_1:46367773-46367792 None:intergenic 50.0%
!! TGGTGGTGGTGTTGTTGAGA+AGG - chr4_1:46367774-46367793 None:intergenic 50.0%
! GTTTGTGGAATGGATGGTGG+TGG - chr4_1:46367788-46367807 None:intergenic 50.0%
!! GCGTTGGTTTGTGGAATGGA+TGG - chr4_1:46367794-46367813 None:intergenic 50.0%
!! CTGGACCTGCTATTGGTCTT+TGG + chr4_1:46368010-46368029 Msa0550810:CDS 50.0%
ACGGCCGAAATACCACTTGT+TGG - chr4_1:46368866-46368885 None:intergenic 50.0%
AGTAAGGTGGCGTGCTTTGT+TGG + chr4_1:46368943-46368962 Msa0550810:intron 50.0%
CCCAACAATGACAAAAGCGG+AGG + chr4_1:46369059-46369078 Msa0550810:intron 50.0%
! GCCCAGTTGTGTCCCTTTTA+TGG + chr4_1:46369396-46369415 Msa0550810:intron 50.0%
! GATTGGTTGCTCAGAGTGCA+AGG + chr4_1:46369885-46369904 Msa0550810:CDS 50.0%
GTTCAGGCCATACTCATCCA+AGG - chr4_1:46369953-46369972 None:intergenic 50.0%
AAGGATGAGTTTGGCCCAAC+CGG + chr4_1:46370020-46370039 Msa0550810:intron 50.0%
AGCAACAGCCAAAGCCTTCA+GGG - chr4_1:46370446-46370465 None:intergenic 50.0%
TAGCAACAGCCAAAGCCTTC+AGG - chr4_1:46370447-46370466 None:intergenic 50.0%
GAGGTAAGCGGCGGTTTGAA+TGG - chr4_1:46367744-46367763 None:intergenic 55.0%
GGGAATGAAGAGGTAAGCGG+CGG - chr4_1:46367753-46367772 None:intergenic 55.0%
GTGTTAGGAACCCGAAGCGA+CGG - chr4_1:46367840-46367859 None:intergenic 55.0%
! AGGTGGCGTGCTTTGTTGGA+TGG + chr4_1:46368947-46368966 Msa0550810:intron 55.0%
CAGGCCATACTCATCCAAGG+TGG - chr4_1:46369950-46369969 None:intergenic 55.0%
!! TTTGGCCCAACCGGCTTGTA+AGG + chr4_1:46370029-46370048 Msa0550810:intron 55.0%
CCTCACCTTACAAGCCGGTT+GGG - chr4_1:46370037-46370056 None:intergenic 55.0%
TCCTCACCTTACAAGCCGGT+TGG - chr4_1:46370038-46370057 None:intergenic 55.0%
GCAACAGCCAAAGCCTTCAG+GGG - chr4_1:46370445-46370464 None:intergenic 55.0%
! TTTGGTGCGACAACGCTCGC+AGG + chr4_1:46369354-46369373 Msa0550810:CDS 60.0%
!! CCCAACCGGCTTGTAAGGTG+AGG + chr4_1:46370034-46370053 Msa0550810:intron 60.0%
AGACTCTTGGGGACCCCTGA+AGG + chr4_1:46370429-46370448 Msa0550810:CDS 60.0%
TTGGGGACCCCTGAAGGCTT+TGG + chr4_1:46370435-46370454 Msa0550810:CDS 60.0%
ATGGGATTGCTGGGGCTGCT+TGG + chr4_1:46370515-46370534 Msa0550810:CDS 60.0%
TGGGATTGCTGGGGCTGCTT+GGG + chr4_1:46370516-46370535 Msa0550810:CDS 60.0%
TGGGGCTGCTTGGGCTACAT+TGG + chr4_1:46370525-46370544 Msa0550810:CDS 60.0%
TCGAGCCGGAACCGTCGCTT+CGG + chr4_1:46367826-46367845 Msa0550810:CDS 65.0%
GGAACCCGAAGCGACGGTTC+CGG - chr4_1:46367834-46367853 None:intergenic 65.0%
! GAAGCGACGGTTCCGGCTCG+AGG - chr4_1:46367827-46367846 None:intergenic 70.0%
CGAGCCGGAACCGTCGCTTC+GGG + chr4_1:46367827-46367846 Msa0550810:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 46367673 46370564 46367673 ID=Msa0550810;Name=Msa0550810
chr4_1 mRNA 46367673 46370564 46367673 ID=Msa0550810-mRNA-1;Parent=Msa0550810;Name=Msa0550810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|6|0|299
chr4_1 exon 46367673 46368108 46367673 ID=Msa0550810-mRNA-1:exon:12401;Parent=Msa0550810-mRNA-1
chr4_1 exon 46368207 46368301 46368207 ID=Msa0550810-mRNA-1:exon:12402;Parent=Msa0550810-mRNA-1
chr4_1 exon 46369267 46369375 46369267 ID=Msa0550810-mRNA-1:exon:12403;Parent=Msa0550810-mRNA-1
chr4_1 exon 46369500 46369555 46369500 ID=Msa0550810-mRNA-1:exon:12404;Parent=Msa0550810-mRNA-1
chr4_1 exon 46369851 46369906 46369851 ID=Msa0550810-mRNA-1:exon:12405;Parent=Msa0550810-mRNA-1
chr4_1 exon 46370417 46370564 46370417 ID=Msa0550810-mRNA-1:exon:12406;Parent=Msa0550810-mRNA-1
chr4_1 CDS 46367673 46368108 46367673 ID=Msa0550810-mRNA-1:cds;Parent=Msa0550810-mRNA-1
chr4_1 CDS 46368207 46368301 46368207 ID=Msa0550810-mRNA-1:cds;Parent=Msa0550810-mRNA-1
chr4_1 CDS 46369267 46369375 46369267 ID=Msa0550810-mRNA-1:cds;Parent=Msa0550810-mRNA-1
chr4_1 CDS 46369500 46369555 46369500 ID=Msa0550810-mRNA-1:cds;Parent=Msa0550810-mRNA-1
chr4_1 CDS 46369851 46369906 46369851 ID=Msa0550810-mRNA-1:cds;Parent=Msa0550810-mRNA-1
chr4_1 CDS 46370417 46370564 46370417 ID=Msa0550810-mRNA-1:cds;Parent=Msa0550810-mRNA-1
Gene Sequence

>Msa0550810

ATGGCACACCAACTCTCACTGCATTTCAATCACCACACTCTTCACCTCGATAACCGCAACCTCATTTCCCATTCAAACCGCCGCTTACCTCTTCATTCCCTTCTCAACAACACCACCACCATCCATTCCACAAACCAACGCATTATTACATCCTCGAGCCGGAACCGTCGCTTCGGGTTCCTAACACCTCGCGTACTTCAAAATCAAGAAGTCAGAAACGAATCTGAACACCAAGAACAAATCAGCGAGGTTTCTTCTAAACAAGAACAAGAAGAAGTGAAGGAACTACTTGTTGAACAGAGTATATGGATTCAGATGAAGGAAATAGTATTGTTTACTGGACCTGCTATTGGTCTTTGGTTATGTGGACCGTTGATGAGTCTCATTGATACTGCTGTTGTTGGTCAAGGAAGTTCAATTGAACTTGCTGCTTTAGGTCCTGCTACTGTTTTTTGCGATTATTTGGGATACTTGTTTATGTTTTTGTCGATTGCTACGTCGAATATGGTTGCTACTGCACTTGCTAAACAGGATAGGGAGGAAGTGCAGCATCACATATCTGTCTTGCTTTTCATTGGATTAGTATGTGGCTTGGTGATGCTACTGTTCACAATGTTATTTGGTGCGACAACGCTCGCAGCTTTTACTGGACCGACAAATGTACATTTAGTACCTGCAGCTAATACTTATGTCCAGATTCGAGGATTGGCATGGCCTTCTTTACTTGTTGGATTGGTTGCTCAGAGTGCAAGTCTTGGTATGAAAGACTCTTGGGGACCCCTGAAGGCTTTGGCTGTTGCTAGTATTATAAATGGAATTGGTGATATCATTCTGTGCAGATATTTAGACTATGGGATTGCTGGGGCTGCTTGGGCTACATTGGCATCACAAGTATGCTAA

Protein sequence

>Msa0550810

MAHQLSLHFNHHTLHLDNRNLISHSNRRLPLHSLLNNTTTIHSTNQRIITSSSRNRRFGFLTPRVLQNQEVRNESEHQEQISEVSSKQEQEEVKELLVEQSIWIQMKEIVLFTGPAIGLWLCGPLMSLIDTAVVGQGSSIELAALGPATVFCDYLGYLFMFLSIATSNMVATALAKQDREEVQHHISVLLFIGLVCGLVMLLFTMLFGATTLAAFTGPTNVHLVPAANTYVQIRGLAWPSLLVGLVAQSASLGMKDSWGPLKALAVASIINGIGDIILCRYLDYGIAGAAWATLASQVC*