AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514290 MtrunA17_Chr3g0122431 100.000 265 0 0 11 275 105 369 0.0 552
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514290 AT1G67325.1 68.773 269 77 4 12 275 21 287 6.38e-126 362
Msa0514290 AT1G67325.2 68.519 270 77 5 12 275 21 288 4.33e-124 358
Msa0514290 AT1G67325.2 60.465 43 17 0 11 53 192 234 8.21e-11 62.4

Find 232 sgRNAs with CRISPR-Local

Find 446 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGGATTTGCATGCATATT+TGG 0.092193 3_4:-64983604 None:intergenic
TTGGAAACTTCAATTGTTTA+TGG 0.130184 3_4:-64982046 None:intergenic
CCCTATGAGGTTCCATTTAC+TGG 0.167642 3_4:+64979831 Msa0514290:CDS
TCAGGGATTCTATACATATT+TGG 0.168181 3_4:-64982614 None:intergenic
GCAATGTCAATTTCTCTTTC+AGG 0.172921 3_4:+64978806 Msa0514290:CDS
AAATTGACGTTACCACATTT+TGG 0.177028 3_4:-64980973 None:intergenic
TCTCTTAAAATAAATTATTT+AGG 0.192159 3_4:-64982727 None:intergenic
CAGGGATTCTATACATATTT+GGG 0.211681 3_4:-64982613 None:intergenic
TATATTGGTGCCCCACCTTA+TGG 0.213371 3_4:+64979780 Msa0514290:CDS
GATTAGCACTCCCGGTATTC+AGG 0.237229 3_4:-64982632 None:intergenic
CTCTTATGCTTCCTGTCATT+TGG 0.241291 3_4:+64981616 Msa0514290:CDS
GCATACCTGGGATCCGGGTT+TGG 0.243357 3_4:-64981037 None:intergenic
AGGGATTTGCATGCATATTT+GGG 0.253526 3_4:-64983603 None:intergenic
ACTTTGGTGCCTTTGGTCTT+TGG 0.254708 3_4:+64982662 Msa0514290:three_prime_UTR
CGATGACAAGTCTCAGAAAA+AGG 0.257099 3_4:+64980822 Msa0514290:CDS
AATAATTAATGATGTCAAAT+AGG 0.268957 3_4:+64982510 Msa0514290:three_prime_UTR
TGTGATGATACAAGTAATTC+AGG 0.270284 3_4:-64983623 None:intergenic
GTGAACACCTTATGAATAAA+AGG 0.283154 3_4:-64983743 None:intergenic
GAAATTGACATTGCCGCAAC+TGG 0.289903 3_4:-64978797 None:intergenic
TATTAACTGAGATGGTATTT+TGG 0.292017 3_4:+64981884 Msa0514290:three_prime_UTR
AATCTTTGTGAGTGCTTTGT+TGG 0.292454 3_4:+64982333 Msa0514290:three_prime_UTR
CAGCATTGTAAAAGAGGCTT+TGG 0.309688 3_4:-64984126 None:intergenic
GTTATTTGAACATCAACTTT+AGG 0.309779 3_4:-64983302 None:intergenic
GTCCAGCCATTTCTCATCAT+TGG 0.310897 3_4:-64983885 None:intergenic
TCTTCCAGCATTGCTCAGTT+TGG 0.312615 3_4:+64981777 Msa0514290:three_prime_UTR
TAGGCTGATCCTCCAGTAAA+TGG 0.316077 3_4:-64979843 None:intergenic
CACATTGTCTTGTATACCTT+TGG 0.316373 3_4:-64982792 None:intergenic
GTGCTTTGTTGGGTCCATAC+TGG 0.320851 3_4:+64982344 Msa0514290:three_prime_UTR
GGATTTCACTTTGGTGCCTT+TGG 0.324797 3_4:+64982655 Msa0514290:three_prime_UTR
CTTCCAGCATTGCTCAGTTT+GGG 0.326844 3_4:+64981778 Msa0514290:three_prime_UTR
ATATGCCATGCCCCAGCTAT+TGG 0.331863 3_4:+64980231 Msa0514290:CDS
AATGATTGGTTAAGAGAGAT+AGG 0.333052 3_4:-64982695 None:intergenic
ATATTGGTGCCCCACCTTAT+GGG 0.333502 3_4:+64979781 Msa0514290:CDS
TCCAGCCATTTCTCATCATT+GGG 0.335428 3_4:-64983884 None:intergenic
TTGTTGCACTTTGGTCTTGA+AGG 0.335707 3_4:+64983859 Msa0514290:three_prime_UTR
CCTTATGGGTCTTTATTCAA+TGG 0.342244 3_4:+64979795 Msa0514290:CDS
TATGGCCTTGGTGTCCCTAT+TGG 0.344994 3_4:+64980259 Msa0514290:CDS
CTAATCTGTGAGTGCTTTGT+TGG 0.355886 3_4:+64982372 Msa0514290:three_prime_UTR
ATATTTCACTTGGGTGTCAT+TGG 0.366785 3_4:-64983383 None:intergenic
CATACCTGGGATCCGGGTTT+GGG 0.368855 3_4:-64981036 None:intergenic
TCTGTCTGTTGCACTTGGTT+CGG 0.369594 3_4:-64981371 None:intergenic
ATGCAACTCGTGACAATGAT+TGG 0.373547 3_4:+64980944 Msa0514290:CDS
GGGGCGTTGGAGCCTAAATA+AGG 0.374623 3_4:-64979747 None:intergenic
TTTATTGTTGCAACAGAGAT+TGG 0.375131 3_4:+64981500 Msa0514290:CDS
TCTGGCATAAAGATTGTTGC+AGG 0.380709 3_4:+64981947 Msa0514290:three_prime_UTR
CATGCATATTTGGGGACTAC+AGG 0.384127 3_4:-64983594 None:intergenic
ACAGATTAGCCCGCCCAGTA+TGG 0.384578 3_4:-64982358 None:intergenic
ATTATTATATTAGACAAATC+AGG 0.385571 3_4:-64984044 None:intergenic
GGTGCAGTTACGCATATTGC+AGG 0.385655 3_4:-64978833 None:intergenic
ACCAAAAGGAAACTTAAAAC+TGG 0.389800 3_4:-64981972 None:intergenic
ATAAGGAGCTGCGGATGAAT+AGG 0.393530 3_4:-64979730 None:intergenic
TCATCCGCAGCTCCTTATTT+AGG 0.393685 3_4:+64979735 Msa0514290:CDS
ACCATTGCTCCAGGTCCAAT+AGG 0.396253 3_4:-64980274 None:intergenic
TACATATTTGGGGCCTATAC+AGG 0.398538 3_4:-64982602 None:intergenic
TCCAGTAAATGGAACCTCAT+AGG 0.398572 3_4:-64979832 None:intergenic
ATCTTTGTGAGTGCTTTGTT+GGG 0.402925 3_4:+64982334 Msa0514290:three_prime_UTR
ACTTGGGTGTCATTGGCATT+TGG 0.403483 3_4:-64983376 None:intergenic
GCTAGATGTAATGGTCTATA+CGG 0.404926 3_4:-64979903 None:intergenic
TTAGGTGGAGAGAGAATGAT+TGG 0.405109 3_4:-64982709 None:intergenic
ACACAATGGGAAACAGAATA+TGG 0.407375 3_4:-64982438 None:intergenic
GGAGAGTTAAAATGCACTCT+TGG 0.418979 3_4:+64982555 Msa0514290:three_prime_UTR
TACTTGCACTTTACCTGTAT+AGG 0.423645 3_4:+64982589 Msa0514290:three_prime_UTR
ACAATCAAATAATGCTTCTC+AGG 0.428246 3_4:-64983657 None:intergenic
GAATTATGATCAGCAGGCCT+TGG 0.428440 3_4:-64978859 None:intergenic
CCTTAGCAGGGCACTAGGCC+AGG 0.428460 3_4:+64980790 Msa0514290:intron
GGCCATAGCGATCCAATAGC+TGG 0.429376 3_4:-64980243 None:intergenic
CTATTGGATCGCTATGGCCT+TGG 0.429425 3_4:+64980247 Msa0514290:CDS
ATCTCCAGATCAAAATGAAC+AGG 0.432251 3_4:+64981440 Msa0514290:CDS
ACATAGATTAGCACTCAGTA+TGG 0.435641 3_4:-64982397 None:intergenic
CCAGTAAATGGAACCTCATA+GGG 0.438911 3_4:-64979831 None:intergenic
TTATCCCATACCATTGCTCC+AGG 0.446633 3_4:-64980283 None:intergenic
TGCTTTGTTGGGTCCATACT+GGG 0.446821 3_4:+64982345 Msa0514290:three_prime_UTR
TCGATTAATAAATCAATTCA+AGG 0.450386 3_4:+64983706 Msa0514290:three_prime_UTR
TATGATCAGCAGGCCTTGGT+TGG 0.450863 3_4:-64978855 None:intergenic
TAATCTGTGAGTGCTTTGTT+GGG 0.454204 3_4:+64982373 Msa0514290:three_prime_UTR
ACACCCAAACTGAGCAATGC+TGG 0.457221 3_4:-64981781 None:intergenic
CTGTTGCACTTGGTTCGGAA+TGG 0.457553 3_4:-64981366 None:intergenic
ACAATTCTGTCTGTTGCACT+TGG 0.460673 3_4:-64981376 None:intergenic
CCCGCTCGAGAAGTAGTAGA+AGG 0.460836 3_4:+64977925 Msa0514290:five_prime_UTR
CCCATTGTGTCGCTGACATA+CGG 0.463003 3_4:+64982451 Msa0514290:three_prime_UTR
ATGTGGGTGATGAGATCATT+GGG 0.463319 3_4:-64983922 None:intergenic
AAGGCAGCATACCTGGGATC+CGG 0.463801 3_4:-64981043 None:intergenic
TGAATACCGGGAGTGCTAAT+CGG 0.466600 3_4:+64982634 Msa0514290:three_prime_UTR
GCTCCACTGGTGTATGGTGC+TGG 0.469100 3_4:-64979930 None:intergenic
CTTGGTGTCCCTATTGGACC+TGG 0.469515 3_4:+64980265 Msa0514290:CDS
CCATTGCTCCAGGTCCAATA+GGG 0.469970 3_4:-64980273 None:intergenic
TCAGCCTATCAGTACAGTTA+TGG 0.471174 3_4:+64979858 Msa0514290:CDS
GCTGGTCCTGCTAGATGTAA+TGG 0.476031 3_4:-64979912 None:intergenic
TGTATAGAATCCCTGAATAC+CGG 0.479233 3_4:+64982621 Msa0514290:three_prime_UTR
TTTCAGATTAGAGAGAATGA+TGG 0.480424 3_4:-64983349 None:intergenic
TGAAGGTTAGCAAATTGAAA+AGG 0.481784 3_4:-64981477 None:intergenic
AGCAGTGACTCAAAAGTAAA+CGG 0.482382 3_4:-64982170 None:intergenic
TGTTGCACTTGGTTCGGAAT+GGG 0.484091 3_4:-64981365 None:intergenic
GAGAGTTAAAATGCACTCTT+GGG 0.485117 3_4:+64982556 Msa0514290:three_prime_UTR
GTGTCCAACCACGGCTCCAC+TGG 0.485675 3_4:-64979943 None:intergenic
AGAAGTCACTTGTTGCACTT+TGG 0.486330 3_4:+64983850 Msa0514290:three_prime_UTR
AAAAGATGCCGGAGGGAAGC+TGG 0.486610 3_4:+64981313 Msa0514290:CDS
AGGCTATGCCGATTGTAGTC+AGG 0.489272 3_4:-64984024 None:intergenic
ATTAGCACTCCCGGTATTCA+GGG 0.489411 3_4:-64982631 None:intergenic
GCTTCCATAACTGTACTGAT+AGG 0.490302 3_4:-64979862 None:intergenic
AGTGTTCTTATCAGACTTTG+AGG 0.491350 3_4:-64981183 None:intergenic
AGCATTGTAAAAGAGGCTTT+GGG 0.493554 3_4:-64984125 None:intergenic
ATTTGTTGTATTAACTGAGA+TGG 0.495787 3_4:+64981876 Msa0514290:three_prime_UTR
ATTTAGCAGCATTGTAAAAG+AGG 0.496168 3_4:-64984132 None:intergenic
ACCACGGCTCCACTGGTGTA+TGG 0.498513 3_4:-64979936 None:intergenic
GCATTAAGCCTGACTACAAT+CGG 0.499049 3_4:+64984016 Msa0514290:three_prime_UTR
AATGTTCTACAGAAGTTGCA+TGG 0.499294 3_4:-64984069 None:intergenic
ACTTCTCACCGTCATGTCTC+AGG 0.500947 3_4:+64977992 Msa0514290:exon
AAATAATGCTTCTCAGGAGA+AGG 0.502308 3_4:-64983651 None:intergenic
GTAGCCGCAGGGAAGATGAT+TGG 0.502761 3_4:+64978767 Msa0514290:CDS
TGCAACTCGTGACAATGATT+GGG 0.502973 3_4:+64980945 Msa0514290:CDS
CCTTGCCTTAGCAGGGCACT+AGG 0.504169 3_4:+64980785 Msa0514290:intron
ATGATCAGCAGGCCTTGGTT+GGG 0.505822 3_4:-64978854 None:intergenic
CGATTAATAAATCAATTCAA+GGG 0.508106 3_4:+64983707 Msa0514290:three_prime_UTR
CATTTAAATCATACAATATG+AGG 0.510467 3_4:+64984088 Msa0514290:three_prime_UTR
TCACACTTCCAGCTTCCCTC+CGG 0.511245 3_4:-64981321 None:intergenic
CTTAAAATAAATTATTTAGG+TGG 0.511278 3_4:-64982724 None:intergenic
TTGTTGGGTCCATACTGGGC+GGG 0.511402 3_4:+64982349 Msa0514290:three_prime_UTR
AGATTAGCACATATTTCACT+TGG 0.513773 3_4:-64983393 None:intergenic
GAAGCCTCTTCAAGCTCCAC+AGG 0.514671 3_4:+64979707 Msa0514290:CDS
AGCACCCAGCTGATGATACT+AGG 0.515926 3_4:+64982296 Msa0514290:three_prime_UTR
AACTCCTTTAATGCAAAATG+TGG 0.516625 3_4:-64983939 None:intergenic
AGTTGTACTTAAAATGCAAA+AGG 0.516641 3_4:-64982008 None:intergenic
CACACCCAAACCCGGATCCC+AGG 0.518215 3_4:+64981032 Msa0514290:CDS
TATGGAAGCCGTGTTCCTGC+TGG 0.519467 3_4:+64979876 Msa0514290:CDS
CTTACAGAATTATGATCAGC+AGG 0.520212 3_4:-64978865 None:intergenic
CCGTATGTCAGCGACACAAT+GGG 0.520822 3_4:-64982451 None:intergenic
GGGGCACCAATATAAATTGA+AGG 0.521368 3_4:-64979771 None:intergenic
CACCAATATAAATTGAAGGG+GGG 0.525042 3_4:-64979767 None:intergenic
AAACATGTCTTAGTACTCAC+TGG 0.526208 3_4:-64981730 None:intergenic
GCACCAATATAAATTGAAGG+GGG 0.526551 3_4:-64979768 None:intergenic
CCCTATTGGACCTGGAGCAA+TGG 0.527038 3_4:+64980273 Msa0514290:CDS
ATGCATATTTGGGGACTACA+GGG 0.529056 3_4:-64983593 None:intergenic
TCTGTTGCAACAATAAATGA+AGG 0.531007 3_4:-64981494 None:intergenic
GTGATGATACAAGTAATTCA+GGG 0.531313 3_4:-64983622 None:intergenic
AACAAAAGAATCCAAATGAC+AGG 0.531789 3_4:-64981627 None:intergenic
GCCATAGCGATCCAATAGCT+GGG 0.532044 3_4:-64980242 None:intergenic
GTGCTAATCGGATTTCACTT+TGG 0.532546 3_4:+64982646 Msa0514290:three_prime_UTR
ACTAATGATATCATGAAGGC+TGG 0.534368 3_4:+64983512 Msa0514290:three_prime_UTR
GAGTACTAAGACATGTTTGA+GGG 0.535687 3_4:+64981735 Msa0514290:three_prime_UTR
TAATGTCAGTGGTGCGCAGT+AGG 0.540797 3_4:-64983441 None:intergenic
CGTCAGCCGTGTCAATTACA+TGG 0.541836 3_4:+64982534 Msa0514290:three_prime_UTR
AGGTCCCCAATGATGAGAAA+TGG 0.543073 3_4:+64983879 Msa0514290:three_prime_UTR
AATGTGGGTGATGAGATCAT+TGG 0.543408 3_4:-64983923 None:intergenic
CCCCAATGATGAGAAATGGC+TGG 0.543508 3_4:+64983883 Msa0514290:three_prime_UTR
AGGCAGCATACCTGGGATCC+GGG 0.543582 3_4:-64981042 None:intergenic
TGCTGACAAGCCAGCTGAGT+CGG 0.544079 3_4:+64981401 Msa0514290:CDS
GGCACCAATATAAATTGAAG+GGG 0.544339 3_4:-64979769 None:intergenic
CCTTCTACTACTTCTCGAGC+GGG 0.546466 3_4:-64977925 None:intergenic
TACACCAGTGGAGCCGTGGT+TGG 0.547754 3_4:+64979939 Msa0514290:CDS
GACATGTTTGAGGGTTGAGA+AGG 0.548962 3_4:+64981744 Msa0514290:three_prime_UTR
TGAAATCCGATTAGCACTCC+CGG 0.550185 3_4:-64982640 None:intergenic
ATCAACTTTAGGACAACTTG+TGG 0.551465 3_4:-64983291 None:intergenic
TCAACTTTAGGACAACTTGT+GGG 0.555758 3_4:-64983290 None:intergenic
GGTCTATACGGACTGCCAGC+AGG 0.556407 3_4:-64979891 None:intergenic
TGAATAAAGACCCATAAGGT+GGG 0.565119 3_4:-64979791 None:intergenic
GTGAGAAGTGAGTGCTGCGA+GGG 0.573098 3_4:-64977978 None:intergenic
CCAATCAGAGCAAAAGATGC+CGG 0.573203 3_4:+64981302 Msa0514290:intron
TATAGACCATTACATCTAGC+AGG 0.573249 3_4:+64979906 Msa0514290:CDS
AACTCTCCATGTAATTGACA+CGG 0.577372 3_4:-64982540 None:intergenic
CCCCAGCTATTGGATCGCTA+TGG 0.578680 3_4:+64980241 Msa0514290:CDS
ACCAATATAAATTGAAGGGG+GGG 0.578819 3_4:-64979766 None:intergenic
TCCTTCTACTACTTCTCGAG+CGG 0.579714 3_4:-64977926 None:intergenic
AATAATGCTTCTCAGGAGAA+GGG 0.582176 3_4:-64983650 None:intergenic
TTGAATAAAGACCCATAAGG+TGG 0.582236 3_4:-64979792 None:intergenic
GGGAATTACCTGAGACATGA+CGG 0.584892 3_4:-64978000 None:intergenic
TTGCACATTAAATATAGCAA+TGG 0.587511 3_4:-64981695 None:intergenic
GTAAACGGTTTCTGTGATGC+TGG 0.589212 3_4:-64982155 None:intergenic
GTATAGAATCCCTGAATACC+GGG 0.591508 3_4:+64982622 Msa0514290:three_prime_UTR
GCATACATGCTAAAAGTGGT+AGG 0.594798 3_4:-64982131 None:intergenic
ACAACTTATGGGACAACCAA+AGG 0.595636 3_4:+64982776 Msa0514290:three_prime_UTR
GCCGTATGTCAGCGACACAA+TGG 0.595821 3_4:-64982452 None:intergenic
AGGTACAAAGGAAATAAACT+AGG 0.596332 3_4:-64981670 None:intergenic
GATTAATAAATCAATTCAAG+GGG 0.596558 3_4:+64983708 Msa0514290:three_prime_UTR
GCGATCCAATAGCTGGGGCA+TGG 0.596562 3_4:-64980236 None:intergenic
GGGATTTGCATGCATATTTG+GGG 0.596669 3_4:-64983602 None:intergenic
GCAGACAGTTCAGAACCAAA+AGG 0.598611 3_4:-64981986 None:intergenic
AAATGCAACACACCCAAACC+CGG 0.600952 3_4:+64981024 Msa0514290:CDS
AATAACTAATGATATCATGA+AGG 0.601885 3_4:+64983508 Msa0514290:three_prime_UTR
TGACAACTTCTGCAACATAG+AGG 0.601965 3_4:-64981824 None:intergenic
GATTGGACATGTCCCAGTTG+CGG 0.602850 3_4:+64978784 Msa0514290:CDS
GATTAGCACATATTTCACTT+GGG 0.603016 3_4:-64983392 None:intergenic
CATGTAATTGACACGGCTGA+CGG 0.608977 3_4:-64982533 None:intergenic
CATTAAATATAGCAATGGAT+AGG 0.608999 3_4:-64981690 None:intergenic
AAAACCTAGTATCATCAGCT+GGG 0.611109 3_4:-64982300 None:intergenic
AGGGATTCTATACATATTTG+GGG 0.611454 3_4:-64982612 None:intergenic
GCAATGCTGGAAGACAACTC+TGG 0.612472 3_4:-64981768 None:intergenic
TAGGCCTGTGGAGCTTGAAG+AGG 0.613687 3_4:-64979711 None:intergenic
ACCATACACCAGTGGAGCCG+TGG 0.614260 3_4:+64979935 Msa0514290:CDS
ACAAAGACACCAAAGACCAA+AGG 0.614639 3_4:-64982671 None:intergenic
TGACACATATTATGAGAAGG+TGG 0.618244 3_4:-64981853 None:intergenic
CCATTGAATAAAGACCCATA+AGG 0.619596 3_4:-64979795 None:intergenic
AAATTGACATTGCCGCAACT+GGG 0.619691 3_4:-64978796 None:intergenic
ATAGCAATGGATAGGTACAA+AGG 0.623067 3_4:-64981682 None:intergenic
TTTGTTGGGTCCATACTGGG+CGG 0.624051 3_4:+64982348 Msa0514290:three_prime_UTR
TATGAGGTTCCATTTACTGG+AGG 0.626370 3_4:+64979834 Msa0514290:CDS
GGGCACCAATATAAATTGAA+GGG 0.630466 3_4:-64979770 None:intergenic
AGTGGAGCCGTGGTTGGACA+CGG 0.632225 3_4:+64979945 Msa0514290:CDS
GAACATACCGTGTCCAACCA+CGG 0.632372 3_4:-64979952 None:intergenic
GACACATATTATGAGAAGGT+GGG 0.633114 3_4:-64981852 None:intergenic
GAATAAAGACCCATAAGGTG+GGG 0.636716 3_4:-64979790 None:intergenic
TGAGTACTAAGACATGTTTG+AGG 0.639687 3_4:+64981734 Msa0514290:three_prime_UTR
TGCGTAACTGCACCCAACCA+AGG 0.643014 3_4:+64978842 Msa0514290:CDS
AATTGACACATATTATGAGA+AGG 0.643568 3_4:-64981856 None:intergenic
TGCATATTTGGGGACTACAG+GGG 0.644871 3_4:-64983592 None:intergenic
CCAGCCATTTCTCATCATTG+GGG 0.645208 3_4:-64983883 None:intergenic
TTGAAAAGAAATGAAGAACT+CGG 0.646566 3_4:+64983814 Msa0514290:three_prime_UTR
CAGTAAATGGAACCTCATAG+GGG 0.648620 3_4:-64979830 None:intergenic
TTGACTCATGTAATTGACAC+AGG 0.652301 3_4:-64983537 None:intergenic
CTACTACTTCTCGAGCGGGG+CGG 0.658678 3_4:-64977921 None:intergenic
TCAGAGCAAAAGATGCCGGA+GGG 0.658717 3_4:+64981306 Msa0514290:intron
ATCAGAGCAAAAGATGCCGG+AGG 0.659983 3_4:+64981305 Msa0514290:intron
AGTAAATGGAACCTCATAGG+GGG 0.661420 3_4:-64979829 None:intergenic
CCATAGCGATCCAATAGCTG+GGG 0.661975 3_4:-64980241 None:intergenic
GGAGCCTAAATAAGGAGCTG+CGG 0.664165 3_4:-64979739 None:intergenic
CAAAGGTATACAAGACAATG+TGG 0.665722 3_4:+64982793 Msa0514290:three_prime_UTR
TTTGTTTGTAGGTAGCCGCA+GGG 0.666364 3_4:+64978756 Msa0514290:intron
ACGGACTGCCAGCAGGAACA+CGG 0.673399 3_4:-64979884 None:intergenic
ACTCCTTTAATGCAAAATGT+GGG 0.675383 3_4:-64983938 None:intergenic
AAGTGCAACAGACAGAATTG+TGG 0.680252 3_4:+64981378 Msa0514290:CDS
CAGGTCCAATAGGGACACCA+AGG 0.686173 3_4:-64980264 None:intergenic
GCTGCGGATGAATAGGCCTG+TGG 0.686536 3_4:-64979723 None:intergenic
TGGTGCATACATGCTAAAAG+TGG 0.689603 3_4:-64982135 None:intergenic
GTAAATGGAACCTCATAGGG+GGG 0.695701 3_4:-64979828 None:intergenic
CTTCTACTACTTCTCGAGCG+GGG 0.700067 3_4:-64977924 None:intergenic
GGACCAGCACCATACACCAG+TGG 0.704235 3_4:+64979927 Msa0514290:CDS
GATTGGGCTTGTCCAAAATG+TGG 0.706309 3_4:+64980961 Msa0514290:CDS
ATGTCCAATCATCTTCCCTG+CGG 0.718395 3_4:-64978771 None:intergenic
TAGTTGAATCGTAATGTCAG+TGG 0.738018 3_4:-64983452 None:intergenic
GGTGAGAAGTGAGTGCTGCG+AGG 0.749856 3_4:-64977979 None:intergenic
AAAAGAAATGAAGAACTCGG+CGG 0.753436 3_4:+64983817 Msa0514290:three_prime_UTR
TGTGGGTGATGAGATCATTG+GGG 0.778556 3_4:-64983921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTGAATTTAATATAGTTTA+AGG + chr3_4:64978427-64978446 Msa0514290:intron 10.0%
!! AAAAACATAATTAAAAATAG+AGG - chr3_4:64979023-64979042 None:intergenic 10.0%
!! AAAAAAAAAAGTAAGTTTAA+AGG - chr3_4:64979644-64979663 None:intergenic 10.0%
!!! TAATTTTTTCTAATTAATGA+AGG + chr3_4:64980079-64980098 Msa0514290:intron 10.0%
!! TCTCTTAAAATAAATTATTT+AGG - chr3_4:64982730-64982749 None:intergenic 10.0%
!!! AAACTTAATAAGATTTTTTA+CGG - chr3_4:64983232-64983251 None:intergenic 10.0%
!! AAGTTTATATAGTAAAAATT+TGG + chr3_4:64983477-64983496 Msa0514290:three_prime_UTR 10.0%
!! AACATTGAATATAAACATAT+TGG - chr3_4:64978898-64978917 None:intergenic 15.0%
!!! TGTTTTTTTGTGATATATAA+AGG + chr3_4:64978937-64978956 Msa0514290:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - chr3_4:64979229-64979248 None:intergenic 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG - chr3_4:64979269-64979288 None:intergenic 15.0%
!! AAATAGAATGAAATAATCAT+TGG - chr3_4:64979396-64979415 None:intergenic 15.0%
!! AAATTTAACATAACTGTAAT+AGG - chr3_4:64980182-64980201 None:intergenic 15.0%
!!! AGTTATGTTAAATTTTTTGT+TGG + chr3_4:64980187-64980206 Msa0514290:intron 15.0%
!!! GATATTTTTTCTTGTTTTAT+TGG + chr3_4:64980467-64980486 Msa0514290:intron 15.0%
!! AAGAAAGTTTAGTTAAAAAT+TGG + chr3_4:64982479-64982498 Msa0514290:three_prime_UTR 15.0%
!! AATAATTAATGATGTCAAAT+AGG + chr3_4:64982510-64982529 Msa0514290:three_prime_UTR 15.0%
!! CTTAAAATAAATTATTTAGG+TGG - chr3_4:64982727-64982746 None:intergenic 15.0%
!! GAATGTGATAAATAAATTAA+GGG - chr3_4:64982975-64982994 None:intergenic 15.0%
!! AAAAAGAAAAAAGAGAAAAA+AGG - chr3_4:64983028-64983047 None:intergenic 15.0%
!!! TTTTCTCTTTTTTCTTTTTA+AGG + chr3_4:64983029-64983048 Msa0514290:intron 15.0%
!!! TTTCTCTTTTTTCTTTTTAA+GGG + chr3_4:64983030-64983049 Msa0514290:intron 15.0%
!! AAATATATGATATGTCAATA+AGG - chr3_4:64983189-64983208 None:intergenic 15.0%
!!! TTCAAATTTTATTCATCAAT+AGG + chr3_4:64983960-64983979 Msa0514290:three_prime_UTR 15.0%
!! ATTATTATATTAGACAAATC+AGG - chr3_4:64984047-64984066 None:intergenic 15.0%
!!! TAAGATTCCAATTTTTTCAT+CGG - chr3_4:64978267-64978286 None:intergenic 20.0%
!! ATAAGATTCCTTAAAACAAA+TGG - chr3_4:64978366-64978385 None:intergenic 20.0%
!!! TTGAATTTGTTTTTGTTTGT+AGG + chr3_4:64978745-64978764 Msa0514290:intron 20.0%
!! ATTTAATGTGTCAATCAATT+GGG - chr3_4:64979101-64979120 None:intergenic 20.0%
!! AATTTAATGTGTCAATCAAT+TGG - chr3_4:64979102-64979121 None:intergenic 20.0%
!! ATTGATTGACACATTAAATT+AGG + chr3_4:64979102-64979121 Msa0514290:intron 20.0%
!! TTGATTGACACATTAAATTA+GGG + chr3_4:64979103-64979122 Msa0514290:intron 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + chr3_4:64979347-64979366 Msa0514290:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG + chr3_4:64979348-64979367 Msa0514290:intron 20.0%
!! TTAATGAAGGAAAATATTCA+AGG + chr3_4:64980092-64980111 Msa0514290:intron 20.0%
!! AATAGGATTATATCTACAAA+AGG - chr3_4:64980165-64980184 None:intergenic 20.0%
!!! ATTTTTTGTTGGTGATTATT+TGG + chr3_4:64980198-64980217 Msa0514290:intron 20.0%
!!! GATTATTTAAAACTTTTGTC+AGG + chr3_4:64980318-64980337 Msa0514290:intron 20.0%
!!! CAGCATTTTTTTAAAAACAA+TGG - chr3_4:64980520-64980539 None:intergenic 20.0%
!! TTTAAAAAAATGCTGTATTC+TGG + chr3_4:64980525-64980544 Msa0514290:intron 20.0%
!! TTATATGCATGCAAAATTTA+TGG - chr3_4:64980641-64980660 None:intergenic 20.0%
!! ATGTATTAAGAAACTTCAAT+TGG - chr3_4:64980890-64980909 None:intergenic 20.0%
!! AATCTACATAATAGATATGA+AGG - chr3_4:64981065-64981084 None:intergenic 20.0%
!!! TGGCTAATATTTTAAATTGT+TGG + chr3_4:64981139-64981158 Msa0514290:intron 20.0%
!! TCTGATATAAATATAACAGT+TGG + chr3_4:64981251-64981270 Msa0514290:intron 20.0%
!! AAGATAAATAAGAAAGTGAA+GGG + chr3_4:64982842-64982861 Msa0514290:intron 20.0%
!! TCTATTTAAGTGCATAAATA+GGG - chr3_4:64982931-64982950 None:intergenic 20.0%
!! ATCTATTTAAGTGCATAAAT+AGG - chr3_4:64982932-64982951 None:intergenic 20.0%
!! GGAATGTGATAAATAAATTA+AGG - chr3_4:64982976-64982995 None:intergenic 20.0%
!! AATAACTAATGATATCATGA+AGG + chr3_4:64983508-64983527 Msa0514290:three_prime_UTR 20.0%
!! TCGATTAATAAATCAATTCA+AGG + chr3_4:64983706-64983725 Msa0514290:three_prime_UTR 20.0%
!! CGATTAATAAATCAATTCAA+GGG + chr3_4:64983707-64983726 Msa0514290:three_prime_UTR 20.0%
!! GATTAATAAATCAATTCAAG+GGG + chr3_4:64983708-64983727 Msa0514290:three_prime_UTR 20.0%
!!! TTAGATTCCTTTTATTCATA+AGG + chr3_4:64983736-64983755 Msa0514290:three_prime_UTR 20.0%
!! CATTTAAATCATACAATATG+AGG + chr3_4:64984088-64984107 Msa0514290:three_prime_UTR 20.0%
! ACATTCAGAAAAAGCTTAAT+TGG - chr3_4:64978148-64978167 None:intergenic 25.0%
! AACTTCGACATTAATCAAAT+TGG - chr3_4:64978201-64978220 None:intergenic 25.0%
!!! AAGATTCCAATTTTTTCATC+GGG - chr3_4:64978266-64978285 None:intergenic 25.0%
!!! TTTTAAGGAATCTTATCCAT+AGG + chr3_4:64978370-64978389 Msa0514290:intron 25.0%
! ATTTAAGAGAGTGATAGTTT+AGG + chr3_4:64978455-64978474 Msa0514290:intron 25.0%
! TTTAAGAGAGTGATAGTTTA+GGG + chr3_4:64978456-64978475 Msa0514290:intron 25.0%
!! TTTTATGTCTCTGTTATCTA+TGG + chr3_4:64978503-64978522 Msa0514290:intron 25.0%
! AAAAACAAATTCAAATGCAC+CGG - chr3_4:64978739-64978758 None:intergenic 25.0%
! ATTAAAAATAGAGGAAACAG+AGG - chr3_4:64979014-64979033 None:intergenic 25.0%
! AAAAAGTAAGTTTAAAGGAG+AGG - chr3_4:64979639-64979658 None:intergenic 25.0%
! AAAAACCATATGTGAAACTA+TGG - chr3_4:64980672-64980691 None:intergenic 25.0%
! CATTAAATATAGCAATGGAT+AGG - chr3_4:64981693-64981712 None:intergenic 25.0%
! TTGCACATTAAATATAGCAA+TGG - chr3_4:64981698-64981717 None:intergenic 25.0%
!!! ATTTGTTGTATTAACTGAGA+TGG + chr3_4:64981876-64981895 Msa0514290:three_prime_UTR 25.0%
!! TATTAACTGAGATGGTATTT+TGG + chr3_4:64981884-64981903 Msa0514290:three_prime_UTR 25.0%
! AGTTGTACTTAAAATGCAAA+AGG - chr3_4:64982011-64982030 None:intergenic 25.0%
! TTGGAAACTTCAATTGTTTA+TGG - chr3_4:64982049-64982068 None:intergenic 25.0%
! CTGAATAATCTAAAAACACT+TGG - chr3_4:64982068-64982087 None:intergenic 25.0%
!!! CAAGTGTTTTTAGATTATTC+AGG + chr3_4:64982066-64982085 Msa0514290:three_prime_UTR 25.0%
!! CCATTAAAAAAATCTAGGAT+TGG - chr3_4:64982264-64982283 None:intergenic 25.0%
!!! CCAATCCTAGATTTTTTTAA+TGG + chr3_4:64982261-64982280 Msa0514290:three_prime_UTR 25.0%
! CATGACCATTAAAAAAATCT+AGG - chr3_4:64982269-64982288 None:intergenic 25.0%
! GAAGATAAATAAGAAAGTGA+AGG + chr3_4:64982841-64982860 Msa0514290:intron 25.0%
! TCAATAAGGAAACTAACATA+TGG - chr3_4:64983175-64983194 None:intergenic 25.0%
!!! GATTTTTTACGGTTGTATTT+CGG - chr3_4:64983221-64983240 None:intergenic 25.0%
! GTTATTTGAACATCAACTTT+AGG - chr3_4:64983305-64983324 None:intergenic 25.0%
! TTGAAAAGAAATGAAGAACT+CGG + chr3_4:64983814-64983833 Msa0514290:three_prime_UTR 25.0%
GAAACGAGATCGATTAATTA+GGG - chr3_4:64978061-64978080 None:intergenic 30.0%
AGAAACGAGATCGATTAATT+AGG - chr3_4:64978062-64978081 None:intergenic 30.0%
AATTGACAAAACCCTAATTG+AGG - chr3_4:64978089-64978108 None:intergenic 30.0%
AAGCTTAATTGGATCGAATT+GGG - chr3_4:64978137-64978156 None:intergenic 30.0%
AAAGCTTAATTGGATCGAAT+TGG - chr3_4:64978138-64978157 None:intergenic 30.0%
!!! AGATTCCAATTTTTTCATCG+GGG - chr3_4:64978265-64978284 None:intergenic 30.0%
!!! GTTCGTTACCATTTGTTTTA+AGG + chr3_4:64978355-64978374 Msa0514290:intron 30.0%
!! ATCTTATCCATAGGTTTTGA+CGG + chr3_4:64978379-64978398 Msa0514290:intron 30.0%
ATAGTAATTCCAAGTAACAC+AGG - chr3_4:64978547-64978566 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG - chr3_4:64979309-64979328 None:intergenic 30.0%
!! GAGTTTTGACATATGCTATT+TGG + chr3_4:64979587-64979606 Msa0514290:intron 30.0%
! TTTGACATATGCTATTTGGT+TGG + chr3_4:64979591-64979610 Msa0514290:intron 30.0%
AATTCAGTTGCTTGAATGAT+GGG - chr3_4:64980030-64980049 None:intergenic 30.0%
AAATTCAGTTGCTTGAATGA+TGG - chr3_4:64980031-64980050 None:intergenic 30.0%
ATACAAGAAAGAATGCAGAT+TGG - chr3_4:64980373-64980392 None:intergenic 30.0%
CTTATCCATAGTTTCACATA+TGG + chr3_4:64980664-64980683 Msa0514290:intron 30.0%
! ATTGCCATTTCAGATTACTA+GGG - chr3_4:64980705-64980724 None:intergenic 30.0%
! TATTGCCATTTCAGATTACT+AGG - chr3_4:64980706-64980725 None:intergenic 30.0%
AAATTGCACAATCAGAAAGA+AGG - chr3_4:64980729-64980748 None:intergenic 30.0%
TTTCTGATTGTGCAATTTGA+TGG + chr3_4:64980731-64980750 Msa0514290:intron 30.0%
TTAACTAAGTATAGCAAACC+TGG - chr3_4:64980850-64980869 None:intergenic 30.0%
TTGCATCTATACGGAAAAAT+GGG - chr3_4:64980930-64980949 None:intergenic 30.0%
! AAATTGACGTTACCACATTT+TGG - chr3_4:64980976-64980995 None:intergenic 30.0%
TCATCCATGCTTATAATCTA+TGG + chr3_4:64981119-64981138 Msa0514290:intron 30.0%
TTAGCCATAGATTATAAGCA+TGG - chr3_4:64981126-64981145 None:intergenic 30.0%
TGAAGGTTAGCAAATTGAAA+AGG - chr3_4:64981480-64981499 None:intergenic 30.0%
TCTGTTGCAACAATAAATGA+AGG - chr3_4:64981497-64981516 None:intergenic 30.0%
TTTATTGTTGCAACAGAGAT+TGG + chr3_4:64981500-64981519 Msa0514290:CDS 30.0%
AACAAAAGAATCCAAATGAC+AGG - chr3_4:64981630-64981649 None:intergenic 30.0%
AGGTACAAAGGAAATAAACT+AGG - chr3_4:64981673-64981692 None:intergenic 30.0%
ATCTTTATGCCAGAAAAATC+TGG - chr3_4:64981941-64981960 None:intergenic 30.0%
!!! TCCAGTTTTAAGTTTCCTTT+TGG + chr3_4:64981971-64981990 Msa0514290:three_prime_UTR 30.0%
ACCAAAAGGAAACTTAAAAC+TGG - chr3_4:64981975-64981994 None:intergenic 30.0%
!!! ACATTTCAGTTTTAGCTTGT+TGG + chr3_4:64982091-64982110 Msa0514290:three_prime_UTR 30.0%
AGGGATTCTATACATATTTG+GGG - chr3_4:64982615-64982634 None:intergenic 30.0%
CAGGGATTCTATACATATTT+GGG - chr3_4:64982616-64982635 None:intergenic 30.0%
TCAGGGATTCTATACATATT+TGG - chr3_4:64982617-64982636 None:intergenic 30.0%
! AATGATTGGTTAAGAGAGAT+AGG - chr3_4:64982698-64982717 None:intergenic 30.0%
! GTTATTTGAACCACCATTTT+TGG + chr3_4:64982753-64982772 Msa0514290:three_prime_UTR 30.0%
!! ACCATTTTTGGACAACTTAT+GGG + chr3_4:64982765-64982784 Msa0514290:three_prime_UTR 30.0%
TTTCAGATTAGAGAGAATGA+TGG - chr3_4:64983352-64983371 None:intergenic 30.0%
GATTAGCACATATTTCACTT+GGG - chr3_4:64983395-64983414 None:intergenic 30.0%
AGATTAGCACATATTTCACT+TGG - chr3_4:64983396-64983415 None:intergenic 30.0%
! TGCTCTTTTCTACTTCTATT+AGG + chr3_4:64983569-64983588 Msa0514290:three_prime_UTR 30.0%
GTGATGATACAAGTAATTCA+GGG - chr3_4:64983625-64983644 None:intergenic 30.0%
TGTGATGATACAAGTAATTC+AGG - chr3_4:64983626-64983645 None:intergenic 30.0%
ACAATCAAATAATGCTTCTC+AGG - chr3_4:64983660-64983679 None:intergenic 30.0%
GTGAACACCTTATGAATAAA+AGG - chr3_4:64983746-64983765 None:intergenic 30.0%
!! AATGGCTGGACATTTTAAAA+AGG + chr3_4:64983897-64983916 Msa0514290:three_prime_UTR 30.0%
ACTCCTTTAATGCAAAATGT+GGG - chr3_4:64983941-64983960 None:intergenic 30.0%
AACTCCTTTAATGCAAAATG+TGG - chr3_4:64983942-64983961 None:intergenic 30.0%
ATTTAGCAGCATTGTAAAAG+AGG - chr3_4:64984135-64984154 None:intergenic 30.0%
TTCGAAAGCGAAATTGAAGA+AGG - chr3_4:64978038-64978057 None:intergenic 35.0%
!!! ATTCCAATTTTTTCATCGGG+GGG - chr3_4:64978263-64978282 None:intergenic 35.0%
!!! GATTCCAATTTTTTCATCGG+GGG - chr3_4:64978264-64978283 None:intergenic 35.0%
AACAAATCCGTCAAAACCTA+TGG - chr3_4:64978389-64978408 None:intergenic 35.0%
!! TGACGGATTTGTTGTACTTT+AGG + chr3_4:64978396-64978415 Msa0514290:intron 35.0%
! TCAACATATCCTGTGTTACT+TGG + chr3_4:64978535-64978554 Msa0514290:intron 35.0%
ATAGTGGTGAGTGTGAAAAT+AGG - chr3_4:64978617-64978636 None:intergenic 35.0%
CATAGCAAGAATTTGTATCG+CGG - chr3_4:64978648-64978667 None:intergenic 35.0%
GCAATGTCAATTTCTCTTTC+AGG + chr3_4:64978806-64978825 Msa0514290:CDS 35.0%
CTTACAGAATTATGATCAGC+AGG - chr3_4:64978868-64978887 None:intergenic 35.0%
AAAATAGAGGAAACAGAGGA+TGG - chr3_4:64979010-64979029 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr3_4:64979439-64979458 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG - chr3_4:64979204-64979223 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr3_4:64979439-64979458 Msa0514290:intron 35.0%
GAGTAAAACAATAGAGGTCA+CGG + chr3_4:64979465-64979484 Msa0514290:intron 35.0%
ACCAATATAAATTGAAGGGG+GGG - chr3_4:64979769-64979788 None:intergenic 35.0%
CACCAATATAAATTGAAGGG+GGG - chr3_4:64979770-64979789 None:intergenic 35.0%
GCACCAATATAAATTGAAGG+GGG - chr3_4:64979771-64979790 None:intergenic 35.0%
GGCACCAATATAAATTGAAG+GGG - chr3_4:64979772-64979791 None:intergenic 35.0%
GGGCACCAATATAAATTGAA+GGG - chr3_4:64979773-64979792 None:intergenic 35.0%
TGAATAAAGACCCATAAGGT+GGG - chr3_4:64979794-64979813 None:intergenic 35.0%
TTGAATAAAGACCCATAAGG+TGG - chr3_4:64979795-64979814 None:intergenic 35.0%
CCATTGAATAAAGACCCATA+AGG - chr3_4:64979798-64979817 None:intergenic 35.0%
CCTTATGGGTCTTTATTCAA+TGG + chr3_4:64979795-64979814 Msa0514290:CDS 35.0%
GCTAGATGTAATGGTCTATA+CGG - chr3_4:64979906-64979925 None:intergenic 35.0%
TATAGACCATTACATCTAGC+AGG + chr3_4:64979906-64979925 Msa0514290:CDS 35.0%
! TTGCTTGAATGATGGGAAAA+GGG - chr3_4:64979984-64980003 None:intergenic 35.0%
CATTCAGTTGCTTGAATGAT+GGG - chr3_4:64979991-64980010 None:intergenic 35.0%
! TTGCTTGAATGATGGGAAAA+GGG - chr3_4:64979984-64980003 None:intergenic 35.0%
!! TTTGTTGGTGATTATTTGGC+AGG + chr3_4:64980202-64980221 Msa0514290:intron 35.0%
! TGCATTCTAGTTGGTTACAA+TGG + chr3_4:64980577-64980596 Msa0514290:intron 35.0%
TGATCCCTAGTAATCTGAAA+TGG + chr3_4:64980698-64980717 Msa0514290:intron 35.0%
GATGACAAGTCTCAGAAAAA+GGG + chr3_4:64980823-64980842 Msa0514290:CDS 35.0%
TGCATCTATACGGAAAAATG+GGG - chr3_4:64980929-64980948 None:intergenic 35.0%
GTTGCATCTATACGGAAAAA+TGG - chr3_4:64980931-64980950 None:intergenic 35.0%
!! GGATATGATTATTTTGCTGC+AGG + chr3_4:64981160-64981179 Msa0514290:intron 35.0%
AGTGTTCTTATCAGACTTTG+AGG - chr3_4:64981186-64981205 None:intergenic 35.0%
! TTTTGATCTGGAGATGATGA+GGG - chr3_4:64981435-64981454 None:intergenic 35.0%
!! ATTTTGATCTGGAGATGATG+AGG - chr3_4:64981436-64981455 None:intergenic 35.0%
ATCTCCAGATCAAAATGAAC+AGG + chr3_4:64981440-64981459 Msa0514290:CDS 35.0%
!! CAAACCTGTTCATTTTGATC+TGG - chr3_4:64981447-64981466 None:intergenic 35.0%
ATAGCAATGGATAGGTACAA+AGG - chr3_4:64981685-64981704 None:intergenic 35.0%
AAACATGTCTTAGTACTCAC+TGG - chr3_4:64981733-64981752 None:intergenic 35.0%
TGAGTACTAAGACATGTTTG+AGG + chr3_4:64981734-64981753 Msa0514290:three_prime_UTR 35.0%
GAGTACTAAGACATGTTTGA+GGG + chr3_4:64981735-64981754 Msa0514290:three_prime_UTR 35.0%
AGCAGTGACTCAAAAGTAAA+CGG - chr3_4:64982173-64982192 None:intergenic 35.0%
!! ACTGCTTTTAGTTAGTTGTG+TGG + chr3_4:64982187-64982206 Msa0514290:three_prime_UTR 35.0%
AAAACCTAGTATCATCAGCT+GGG - chr3_4:64982303-64982322 None:intergenic 35.0%
AAAAACCTAGTATCATCAGC+TGG - chr3_4:64982304-64982323 None:intergenic 35.0%
! AGCTGATGATACTAGGTTTT+TGG + chr3_4:64982303-64982322 Msa0514290:three_prime_UTR 35.0%
! GCTGATGATACTAGGTTTTT+GGG + chr3_4:64982304-64982323 Msa0514290:three_prime_UTR 35.0%
!! ATGATACTAGGTTTTTGGGA+GGG + chr3_4:64982308-64982327 Msa0514290:three_prime_UTR 35.0%
AATCTTTGTGAGTGCTTTGT+TGG + chr3_4:64982333-64982352 Msa0514290:three_prime_UTR 35.0%
! ATCTTTGTGAGTGCTTTGTT+GGG + chr3_4:64982334-64982353 Msa0514290:three_prime_UTR 35.0%
! TAATCTGTGAGTGCTTTGTT+GGG + chr3_4:64982373-64982392 Msa0514290:three_prime_UTR 35.0%
ACATAGATTAGCACTCAGTA+TGG - chr3_4:64982400-64982419 None:intergenic 35.0%
ACACAATGGGAAACAGAATA+TGG - chr3_4:64982441-64982460 None:intergenic 35.0%
AACTCTCCATGTAATTGACA+CGG - chr3_4:64982543-64982562 None:intergenic 35.0%
GAGAGTTAAAATGCACTCTT+GGG + chr3_4:64982556-64982575 Msa0514290:three_prime_UTR 35.0%
TACTTGCACTTTACCTGTAT+AGG + chr3_4:64982589-64982608 Msa0514290:three_prime_UTR 35.0%
TGTATAGAATCCCTGAATAC+CGG + chr3_4:64982621-64982640 Msa0514290:three_prime_UTR 35.0%
CATAAGTTGTCCAAAAATGG+TGG - chr3_4:64982766-64982785 None:intergenic 35.0%
!! CACCATTTTTGGACAACTTA+TGG + chr3_4:64982764-64982783 Msa0514290:three_prime_UTR 35.0%
TCCCATAAGTTGTCCAAAAA+TGG - chr3_4:64982769-64982788 None:intergenic 35.0%
CACATTGTCTTGTATACCTT+TGG - chr3_4:64982795-64982814 None:intergenic 35.0%
! CAAAGGTATACAAGACAATG+TGG + chr3_4:64982793-64982812 Msa0514290:three_prime_UTR 35.0%
AAATAAGAAAGTGAAGGGAG+AGG + chr3_4:64982847-64982866 Msa0514290:intron 35.0%
AATAAGAAAGTGAAGGGAGA+GGG + chr3_4:64982848-64982867 Msa0514290:intron 35.0%
!! TCAACTTTAGGACAACTTGT+GGG - chr3_4:64983293-64983312 None:intergenic 35.0%
!! ATCAACTTTAGGACAACTTG+TGG - chr3_4:64983294-64983313 None:intergenic 35.0%
! ATATTTCACTTGGGTGTCAT+TGG - chr3_4:64983386-64983405 None:intergenic 35.0%
TAGTTGAATCGTAATGTCAG+TGG - chr3_4:64983455-64983474 None:intergenic 35.0%
ACTAATGATATCATGAAGGC+TGG + chr3_4:64983512-64983531 Msa0514290:three_prime_UTR 35.0%
TTGACTCATGTAATTGACAC+AGG - chr3_4:64983540-64983559 None:intergenic 35.0%
AGGGATTTGCATGCATATTT+GGG - chr3_4:64983606-64983625 None:intergenic 35.0%
AATAATGCTTCTCAGGAGAA+GGG - chr3_4:64983653-64983672 None:intergenic 35.0%
AAATAATGCTTCTCAGGAGA+AGG - chr3_4:64983654-64983673 None:intergenic 35.0%
AAAAGAAATGAAGAACTCGG+CGG + chr3_4:64983817-64983836 Msa0514290:three_prime_UTR 35.0%
! TCACCCACATTTTGCATTAA+AGG + chr3_4:64983935-64983954 Msa0514290:three_prime_UTR 35.0%
AATGTTCTACAGAAGTTGCA+TGG - chr3_4:64984072-64984091 None:intergenic 35.0%
AGCATTGTAAAAGAGGCTTT+GGG - chr3_4:64984128-64984147 None:intergenic 35.0%
GACAAAACCCTAATTGAGGT+GGG - chr3_4:64978085-64978104 None:intergenic 40.0%
TGACAAAACCCTAATTGAGG+TGG - chr3_4:64978086-64978105 None:intergenic 40.0%
GGGGGGTTAATTAAGCAAAA+AGG - chr3_4:64978246-64978265 None:intergenic 40.0%
TAACCCCCCGATGAAAAAAT+TGG + chr3_4:64978257-64978276 Msa0514290:intron 40.0%
! TCAATCTGTTTTGCCTTTGC+AGG + chr3_4:64978287-64978306 Msa0514290:intron 40.0%
TTCCTGTTATCAACCTGCAA+AGG - chr3_4:64978303-64978322 None:intergenic 40.0%
AAATTGACATTGCCGCAACT+GGG - chr3_4:64978799-64978818 None:intergenic 40.0%
TGTTCATCGTTGTGTCTCTT+GGG + chr3_4:64979067-64979086 Msa0514290:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr3_4:64979443-64979462 None:intergenic 40.0%
AAAGTTGGAGAGGGTAAAGT+TGG - chr3_4:64979294-64979313 None:intergenic 40.0%
TGTGAGAGAAAAGTTGGAGA+GGG - chr3_4:64979303-64979322 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr3_4:64979443-64979462 Msa0514290:intron 40.0%
! GGGGCACCAATATAAATTGA+AGG - chr3_4:64979774-64979793 None:intergenic 40.0%
GAATAAAGACCCATAAGGTG+GGG - chr3_4:64979793-64979812 None:intergenic 40.0%
AGTAAATGGAACCTCATAGG+GGG - chr3_4:64979832-64979851 None:intergenic 40.0%
CAGTAAATGGAACCTCATAG+GGG - chr3_4:64979833-64979852 None:intergenic 40.0%
CCAGTAAATGGAACCTCATA+GGG - chr3_4:64979834-64979853 None:intergenic 40.0%
TCCAGTAAATGGAACCTCAT+AGG - chr3_4:64979835-64979854 None:intergenic 40.0%
TATGAGGTTCCATTTACTGG+AGG + chr3_4:64979834-64979853 Msa0514290:CDS 40.0%
TCAGCCTATCAGTACAGTTA+TGG + chr3_4:64979858-64979877 Msa0514290:CDS 40.0%
! GCTTCCATAACTGTACTGAT+AGG - chr3_4:64979865-64979884 None:intergenic 40.0%
! GTTGCTTGAATGATGGGAAA+AGG - chr3_4:64979985-64980004 None:intergenic 40.0%
CCATTCAGTTGCTTGAATGA+TGG - chr3_4:64979992-64980011 None:intergenic 40.0%
CCATCATTCAAGCAACTGAA+TGG + chr3_4:64979989-64980008 Msa0514290:intron 40.0%
! TGAATGATGGGAAAAGGGAA+AGG - chr3_4:64979979-64979998 None:intergenic 40.0%
! GTTGCTTGAATGATGGGAAA+AGG - chr3_4:64979985-64980004 None:intergenic 40.0%
! TTGGTGATTATTTGGCAGGT+GGG + chr3_4:64980206-64980225 Msa0514290:intron 40.0%
CTAACTGCAGAACGTGATTA+AGG - chr3_4:64980411-64980430 None:intergenic 40.0%
CTTAATCACGTTCTGCAGTT+AGG + chr3_4:64980409-64980428 Msa0514290:intron 40.0%
!! TCTTCTCTGAAGCATCAGTA+TGG + chr3_4:64980490-64980509 Msa0514290:intron 40.0%
ACAAGTACGAGTATGGTACT+GGG - chr3_4:64980558-64980577 None:intergenic 40.0%
AGAATGCACAAGTACGAGTA+TGG - chr3_4:64980565-64980584 None:intergenic 40.0%
TCGTACTTGTGCATTCTAGT+TGG + chr3_4:64980568-64980587 Msa0514290:intron 40.0%
TTGTCATCGCGAAAAAATCC+TGG - chr3_4:64980811-64980830 None:intergenic 40.0%
CGATGACAAGTCTCAGAAAA+AGG + chr3_4:64980822-64980841 Msa0514290:CDS 40.0%
GCATCTATACGGAAAAATGG+GGG - chr3_4:64980928-64980947 None:intergenic 40.0%
TGTCACGAGTTGCATCTATA+CGG - chr3_4:64980939-64980958 None:intergenic 40.0%
ATGCAACTCGTGACAATGAT+TGG + chr3_4:64980944-64980963 Msa0514290:CDS 40.0%
TGCAACTCGTGACAATGATT+GGG + chr3_4:64980945-64980964 Msa0514290:CDS 40.0%
ACAATTCTGTCTGTTGCACT+TGG - chr3_4:64981379-64981398 None:intergenic 40.0%
AAGTGCAACAGACAGAATTG+TGG + chr3_4:64981378-64981397 Msa0514290:CDS 40.0%
CTCTTATGCTTCCTGTCATT+TGG + chr3_4:64981616-64981635 Msa0514290:CDS 40.0%
TGACAACTTCTGCAACATAG+AGG - chr3_4:64981827-64981846 None:intergenic 40.0%
!!! AGATGGTATTTTGGTCTGTG+TGG + chr3_4:64981893-64981912 Msa0514290:three_prime_UTR 40.0%
! ATGTGTCAGCCAGATTTTTC+TGG + chr3_4:64981929-64981948 Msa0514290:three_prime_UTR 40.0%
TCTGGCATAAAGATTGTTGC+AGG + chr3_4:64981947-64981966 Msa0514290:three_prime_UTR 40.0%
GCATACATGCTAAAAGTGGT+AGG - chr3_4:64982134-64982153 None:intergenic 40.0%
TGGTGCATACATGCTAAAAG+TGG - chr3_4:64982138-64982157 None:intergenic 40.0%
!! GATGATACTAGGTTTTTGGG+AGG + chr3_4:64982307-64982326 Msa0514290:three_prime_UTR 40.0%
CTAATCTGTGAGTGCTTTGT+TGG + chr3_4:64982372-64982391 Msa0514290:three_prime_UTR 40.0%
GGAGAGTTAAAATGCACTCT+TGG + chr3_4:64982555-64982574 Msa0514290:three_prime_UTR 40.0%
! TACATATTTGGGGCCTATAC+AGG - chr3_4:64982605-64982624 None:intergenic 40.0%
GTATAGAATCCCTGAATACC+GGG + chr3_4:64982622-64982641 Msa0514290:three_prime_UTR 40.0%
GTGCTAATCGGATTTCACTT+TGG + chr3_4:64982646-64982665 Msa0514290:three_prime_UTR 40.0%
ACAAAGACACCAAAGACCAA+AGG - chr3_4:64982674-64982693 None:intergenic 40.0%
TTAGGTGGAGAGAGAATGAT+TGG - chr3_4:64982712-64982731 None:intergenic 40.0%
ACAACTTATGGGACAACCAA+AGG + chr3_4:64982776-64982795 Msa0514290:three_prime_UTR 40.0%
ATAAGAAAGTGAAGGGAGAG+GGG + chr3_4:64982849-64982868 Msa0514290:intron 40.0%
TGTGCGTGTGGAAAGTAAAA+AGG - chr3_4:64982997-64983016 None:intergenic 40.0%
!!! AAGGATTTTTTGTGTGCGTG+TGG - chr3_4:64983009-64983028 None:intergenic 40.0%
ATGCATATTTGGGGACTACA+GGG - chr3_4:64983596-64983615 None:intergenic 40.0%
GGGATTTGCATGCATATTTG+GGG - chr3_4:64983605-64983624 None:intergenic 40.0%
CAGGGATTTGCATGCATATT+TGG - chr3_4:64983607-64983626 None:intergenic 40.0%
! AGAAGTCACTTGTTGCACTT+TGG + chr3_4:64983850-64983869 Msa0514290:three_prime_UTR 40.0%
!! TTGTTGCACTTTGGTCTTGA+AGG + chr3_4:64983859-64983878 Msa0514290:three_prime_UTR 40.0%
TCCAGCCATTTCTCATCATT+GGG - chr3_4:64983887-64983906 None:intergenic 40.0%
ATGTGGGTGATGAGATCATT+GGG - chr3_4:64983925-64983944 None:intergenic 40.0%
AATGTGGGTGATGAGATCAT+TGG - chr3_4:64983926-64983945 None:intergenic 40.0%
GCATTAAGCCTGACTACAAT+CGG + chr3_4:64984016-64984035 Msa0514290:three_prime_UTR 40.0%
CAGCATTGTAAAAGAGGCTT+TGG - chr3_4:64984129-64984148 None:intergenic 40.0%
TCCTTCTACTACTTCTCGAG+CGG - chr3_4:64977929-64977948 None:intergenic 45.0%
GGGAATTACCTGAGACATGA+CGG - chr3_4:64978003-64978022 None:intergenic 45.0%
GAAGAAGGCGATGAATCGAA+GGG - chr3_4:64978023-64978042 None:intergenic 45.0%
TGAAGAAGGCGATGAATCGA+AGG - chr3_4:64978024-64978043 None:intergenic 45.0%
TCGTTTCTCCCACCTCAATT+AGG + chr3_4:64978074-64978093 Msa0514290:intron 45.0%
CGTTTCTCCCACCTCAATTA+GGG + chr3_4:64978075-64978094 Msa0514290:intron 45.0%
!! TGCCTTTGCAGGTTGATAAC+AGG + chr3_4:64978298-64978317 Msa0514290:intron 45.0%
TATCGCGGAACGTAACATAG+TGG - chr3_4:64978633-64978652 None:intergenic 45.0%
TAAGTCCCTTTCCTCTAGCA+AGG + chr3_4:64978696-64978715 Msa0514290:intron 45.0%
AAGTCCCTTTCCTCTAGCAA+GGG + chr3_4:64978697-64978716 Msa0514290:intron 45.0%
ATATCAGATCCCCTTGCTAG+AGG - chr3_4:64978710-64978729 None:intergenic 45.0%
TCTAGCAAGGGGATCTGATA+TGG + chr3_4:64978709-64978728 Msa0514290:intron 45.0%
!! TTTTGTTTGTAGGTAGCCGC+AGG + chr3_4:64978755-64978774 Msa0514290:intron 45.0%
TTTGTTTGTAGGTAGCCGCA+GGG + chr3_4:64978756-64978775 Msa0514290:intron 45.0%
ATGTCCAATCATCTTCCCTG+CGG - chr3_4:64978774-64978793 None:intergenic 45.0%
GAAATTGACATTGCCGCAAC+TGG - chr3_4:64978800-64978819 None:intergenic 45.0%
GAATTATGATCAGCAGGCCT+TGG - chr3_4:64978862-64978881 None:intergenic 45.0%
ACAGAGGATGGACAATGCAA+AGG - chr3_4:64978998-64979017 None:intergenic 45.0%
CTGTTCATCGTTGTGTCTCT+TGG + chr3_4:64979066-64979085 Msa0514290:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr3_4:64979442-64979461 None:intergenic 45.0%
GTGTGAGAGAAAAGTTGGAG+AGG - chr3_4:64979304-64979323 None:intergenic 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG - chr3_4:64979432-64979451 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr3_4:64979442-64979461 Msa0514290:intron 45.0%
CGGAGGGAGTAAAACAATAG+AGG + chr3_4:64979459-64979478 Msa0514290:intron 45.0%
ATAAGGAGCTGCGGATGAAT+AGG - chr3_4:64979733-64979752 None:intergenic 45.0%
! TCATCCGCAGCTCCTTATTT+AGG + chr3_4:64979735-64979754 Msa0514290:CDS 45.0%
GCCCCCCCTTCAATTTATAT+TGG + chr3_4:64979765-64979784 Msa0514290:CDS 45.0%
! TATATTGGTGCCCCACCTTA+TGG + chr3_4:64979780-64979799 Msa0514290:CDS 45.0%
! ATATTGGTGCCCCACCTTAT+GGG + chr3_4:64979781-64979800 Msa0514290:CDS 45.0%
GTAAATGGAACCTCATAGGG+GGG - chr3_4:64979831-64979850 None:intergenic 45.0%
CCCTATGAGGTTCCATTTAC+TGG + chr3_4:64979831-64979850 Msa0514290:CDS 45.0%
TAGGCTGATCCTCCAGTAAA+TGG - chr3_4:64979846-64979865 None:intergenic 45.0%
!! GTTGGTGATTATTTGGCAGG+TGG + chr3_4:64980205-64980224 Msa0514290:intron 45.0%
TTATCCCATACCATTGCTCC+AGG - chr3_4:64980286-64980305 None:intergenic 45.0%
CACAAGTACGAGTATGGTAC+TGG - chr3_4:64980559-64980578 None:intergenic 45.0%
TAGTTAACCCTTGCCTTAGC+AGG + chr3_4:64980777-64980796 Msa0514290:intron 45.0%
AGTTAACCCTTGCCTTAGCA+GGG + chr3_4:64980778-64980797 Msa0514290:intron 45.0%
AAGTCTCAGAAAAAGGGACC+AGG + chr3_4:64980829-64980848 Msa0514290:CDS 45.0%
GATTGGGCTTGTCCAAAATG+TGG + chr3_4:64980961-64980980 Msa0514290:CDS 45.0%
AAATGCAACACACCCAAACC+CGG + chr3_4:64981024-64981043 Msa0514290:CDS 45.0%
GATATGAAGGCAGCATACCT+GGG - chr3_4:64981052-64981071 None:intergenic 45.0%
AGATATGAAGGCAGCATACC+TGG - chr3_4:64981053-64981072 None:intergenic 45.0%
CCAATCAGAGCAAAAGATGC+CGG + chr3_4:64981302-64981321 Msa0514290:intron 45.0%
!! TGTTGCACTTGGTTCGGAAT+GGG - chr3_4:64981368-64981387 None:intergenic 45.0%
TCTGTCTGTTGCACTTGGTT+CGG - chr3_4:64981374-64981393 None:intergenic 45.0%
GACATGTTTGAGGGTTGAGA+AGG + chr3_4:64981744-64981763 Msa0514290:three_prime_UTR 45.0%
TCTTCCAGCATTGCTCAGTT+TGG + chr3_4:64981777-64981796 Msa0514290:three_prime_UTR 45.0%
CTTCCAGCATTGCTCAGTTT+GGG + chr3_4:64981778-64981797 Msa0514290:three_prime_UTR 45.0%
GCAGACAGTTCAGAACCAAA+AGG - chr3_4:64981989-64982008 None:intergenic 45.0%
GTAAACGGTTTCTGTGATGC+TGG - chr3_4:64982158-64982177 None:intergenic 45.0%
! TGCTTTGTTGGGTCCATACT+GGG + chr3_4:64982345-64982364 Msa0514290:three_prime_UTR 45.0%
CATGTAATTGACACGGCTGA+CGG - chr3_4:64982536-64982555 None:intergenic 45.0%
ATTAGCACTCCCGGTATTCA+GGG - chr3_4:64982634-64982653 None:intergenic 45.0%
!! TGAATACCGGGAGTGCTAAT+CGG + chr3_4:64982634-64982653 Msa0514290:three_prime_UTR 45.0%
TGAAATCCGATTAGCACTCC+CGG - chr3_4:64982643-64982662 None:intergenic 45.0%
!! GGATTTCACTTTGGTGCCTT+TGG + chr3_4:64982655-64982674 Msa0514290:three_prime_UTR 45.0%
!! ACTTTGGTGCCTTTGGTCTT+TGG + chr3_4:64982662-64982681 Msa0514290:three_prime_UTR 45.0%
! GTTGGTTTAGGGTTGTGGAT+GGG + chr3_4:64982871-64982890 Msa0514290:intron 45.0%
!! ACTTGGGTGTCATTGGCATT+TGG - chr3_4:64983379-64983398 None:intergenic 45.0%
TGCATATTTGGGGACTACAG+GGG - chr3_4:64983595-64983614 None:intergenic 45.0%
CATGCATATTTGGGGACTAC+AGG - chr3_4:64983597-64983616 None:intergenic 45.0%
AGGTCCCCAATGATGAGAAA+TGG + chr3_4:64983879-64983898 Msa0514290:three_prime_UTR 45.0%
CCAGCCATTTCTCATCATTG+GGG - chr3_4:64983886-64983905 None:intergenic 45.0%
GTCCAGCCATTTCTCATCAT+TGG - chr3_4:64983888-64983907 None:intergenic 45.0%
TGTGGGTGATGAGATCATTG+GGG - chr3_4:64983924-64983943 None:intergenic 45.0%
CTTCTACTACTTCTCGAGCG+GGG - chr3_4:64977927-64977946 None:intergenic 50.0%
CCTTCTACTACTTCTCGAGC+GGG - chr3_4:64977928-64977947 None:intergenic 50.0%
ACTTCTCACCGTCATGTCTC+AGG + chr3_4:64977992-64978011 Msa0514290:exon 50.0%
! TGGTAACGAACCATCAGTCC+TGG - chr3_4:64978346-64978365 None:intergenic 50.0%
AGTCCCTTTCCTCTAGCAAG+GGG + chr3_4:64978698-64978717 Msa0514290:intron 50.0%
GATCCCCTTGCTAGAGGAAA+GGG - chr3_4:64978704-64978723 None:intergenic 50.0%
AGATCCCCTTGCTAGAGGAA+AGG - chr3_4:64978705-64978724 None:intergenic 50.0%
GGGGATCTGATATGGTTCTC+CGG + chr3_4:64978717-64978736 Msa0514290:intron 50.0%
GATTGGACATGTCCCAGTTG+CGG + chr3_4:64978784-64978803 Msa0514290:CDS 50.0%
GGTGCAGTTACGCATATTGC+AGG - chr3_4:64978836-64978855 None:intergenic 50.0%
ATGATCAGCAGGCCTTGGTT+GGG - chr3_4:64978857-64978876 None:intergenic 50.0%
TATGATCAGCAGGCCTTGGT+TGG - chr3_4:64978858-64978877 None:intergenic 50.0%
GAGGCTTCACAGCAGATTTC+TGG - chr3_4:64979695-64979714 None:intergenic 50.0%
GGAGCCTAAATAAGGAGCTG+CGG - chr3_4:64979742-64979761 None:intergenic 50.0%
! ATAAATTGAAGGGGGGGCGT+TGG - chr3_4:64979763-64979782 None:intergenic 50.0%
GCTGGTCCTGCTAGATGTAA+TGG - chr3_4:64979915-64979934 None:intergenic 50.0%
GAACATACCGTGTCCAACCA+CGG - chr3_4:64979955-64979974 None:intergenic 50.0%
ATATGCCATGCCCCAGCTAT+TGG + chr3_4:64980231-64980250 Msa0514290:CDS 50.0%
CCATAGCGATCCAATAGCTG+GGG - chr3_4:64980244-64980263 None:intergenic 50.0%
GCCATAGCGATCCAATAGCT+GGG - chr3_4:64980245-64980264 None:intergenic 50.0%
CTATTGGATCGCTATGGCCT+TGG + chr3_4:64980247-64980266 Msa0514290:CDS 50.0%
!! TATGGCCTTGGTGTCCCTAT+TGG + chr3_4:64980259-64980278 Msa0514290:CDS 50.0%
CCATTGCTCCAGGTCCAATA+GGG - chr3_4:64980276-64980295 None:intergenic 50.0%
ACCATTGCTCCAGGTCCAAT+AGG - chr3_4:64980277-64980296 None:intergenic 50.0%
TTGGACCTGGAGCAATGGTA+TGG + chr3_4:64980278-64980297 Msa0514290:intron 50.0%
TGGACCTGGAGCAATGGTAT+GGG + chr3_4:64980279-64980298 Msa0514290:intron 50.0%
! CCGGCATCTTTTGCTCTGAT+TGG - chr3_4:64981305-64981324 None:intergenic 50.0%
ATCAGAGCAAAAGATGCCGG+AGG + chr3_4:64981305-64981324 Msa0514290:intron 50.0%
TCAGAGCAAAAGATGCCGGA+GGG + chr3_4:64981306-64981325 Msa0514290:intron 50.0%
!! CTGTTGCACTTGGTTCGGAA+TGG - chr3_4:64981369-64981388 None:intergenic 50.0%
! GGAGATTTTTCCGACTCAGC+TGG - chr3_4:64981414-64981433 None:intergenic 50.0%
GCAATGCTGGAAGACAACTC+TGG - chr3_4:64981771-64981790 None:intergenic 50.0%
ACACCCAAACTGAGCAATGC+TGG - chr3_4:64981784-64981803 None:intergenic 50.0%
AGCACCCAGCTGATGATACT+AGG + chr3_4:64982296-64982315 Msa0514290:three_prime_UTR 50.0%
! GTGCTTTGTTGGGTCCATAC+TGG + chr3_4:64982344-64982363 Msa0514290:three_prime_UTR 50.0%
TTTGTTGGGTCCATACTGGG+CGG + chr3_4:64982348-64982367 Msa0514290:three_prime_UTR 50.0%
CCGTATGTCAGCGACACAAT+GGG - chr3_4:64982454-64982473 None:intergenic 50.0%
! CCCATTGTGTCGCTGACATA+CGG + chr3_4:64982451-64982470 Msa0514290:three_prime_UTR 50.0%
CGTCAGCCGTGTCAATTACA+TGG + chr3_4:64982534-64982553 Msa0514290:three_prime_UTR 50.0%
GATTAGCACTCCCGGTATTC+AGG - chr3_4:64982635-64982654 None:intergenic 50.0%
!! AAGGGAGAGGGGTTGGTTTA+GGG + chr3_4:64982860-64982879 Msa0514290:intron 50.0%
!! GGTTGGTTTAGGGTTGTGGA+TGG + chr3_4:64982870-64982889 Msa0514290:intron 50.0%
TAATGTCAGTGGTGCGCAGT+AGG - chr3_4:64983444-64983463 None:intergenic 50.0%
CCCCAATGATGAGAAATGGC+TGG + chr3_4:64983883-64983902 Msa0514290:three_prime_UTR 50.0%
! AGGCTATGCCGATTGTAGTC+AGG - chr3_4:64984027-64984046 None:intergenic 50.0%
CCCGCTCGAGAAGTAGTAGA+AGG + chr3_4:64977925-64977944 Msa0514290:five_prime_UTR 55.0%
! GTGAGAAGTGAGTGCTGCGA+GGG - chr3_4:64977981-64978000 None:intergenic 55.0%
GTAGCCGCAGGGAAGATGAT+TGG + chr3_4:64978767-64978786 Msa0514290:CDS 55.0%
TGCGTAACTGCACCCAACCA+AGG + chr3_4:64978842-64978861 Msa0514290:CDS 55.0%
GAAGCCTCTTCAAGCTCCAC+AGG + chr3_4:64979707-64979726 Msa0514290:CDS 55.0%
TAGGCCTGTGGAGCTTGAAG+AGG - chr3_4:64979714-64979733 None:intergenic 55.0%
!! GGGGCGTTGGAGCCTAAATA+AGG - chr3_4:64979750-64979769 None:intergenic 55.0%
ATCACCAGTTCCCCCCTATG+AGG + chr3_4:64979818-64979837 Msa0514290:CDS 55.0%
TATGGAAGCCGTGTTCCTGC+TGG + chr3_4:64979876-64979895 Msa0514290:CDS 55.0%
CCCCAGCTATTGGATCGCTA+TGG + chr3_4:64980241-64980260 Msa0514290:CDS 55.0%
GGCCATAGCGATCCAATAGC+TGG - chr3_4:64980246-64980265 None:intergenic 55.0%
CAGGTCCAATAGGGACACCA+AGG - chr3_4:64980267-64980286 None:intergenic 55.0%
!! CTTGGTGTCCCTATTGGACC+TGG + chr3_4:64980265-64980284 Msa0514290:CDS 55.0%
CCCTATTGGACCTGGAGCAA+TGG + chr3_4:64980273-64980292 Msa0514290:CDS 55.0%
CTAGTGCCCTGCTAAGGCAA+GGG - chr3_4:64980787-64980806 None:intergenic 55.0%
CATACCTGGGATCCGGGTTT+GGG - chr3_4:64981039-64981058 None:intergenic 55.0%
AAGGCAGCATACCTGGGATC+CGG - chr3_4:64981046-64981065 None:intergenic 55.0%
AAAAGATGCCGGAGGGAAGC+TGG + chr3_4:64981313-64981332 Msa0514290:CDS 55.0%
TCACACTTCCAGCTTCCCTC+CGG - chr3_4:64981324-64981343 None:intergenic 55.0%
TGCTGACAAGCCAGCTGAGT+CGG + chr3_4:64981401-64981420 Msa0514290:CDS 55.0%
TTGTTGGGTCCATACTGGGC+GGG + chr3_4:64982349-64982368 Msa0514290:three_prime_UTR 55.0%
! ACAGATTAGCCCGCCCAGTA+TGG - chr3_4:64982361-64982380 None:intergenic 55.0%
GCCGTATGTCAGCGACACAA+TGG - chr3_4:64982455-64982474 None:intergenic 55.0%
GAAAGTGAAGGGAGAGGGGT+TGG + chr3_4:64982853-64982872 Msa0514290:intron 55.0%
!! GAAGGGAGAGGGGTTGGTTT+AGG + chr3_4:64982859-64982878 Msa0514290:intron 55.0%
!! GAGGGGTTGGTTTAGGGTTG+TGG + chr3_4:64982866-64982885 Msa0514290:intron 55.0%
CTACTACTTCTCGAGCGGGG+CGG - chr3_4:64977924-64977943 None:intergenic 60.0%
! GGTGAGAAGTGAGTGCTGCG+AGG - chr3_4:64977982-64978001 None:intergenic 60.0%
ACCATCAGTCCTGGCACGCT+TGG - chr3_4:64978337-64978356 None:intergenic 60.0%
GCTGCGGATGAATAGGCCTG+TGG - chr3_4:64979726-64979745 None:intergenic 60.0%
GGAACCTCATAGGGGGGAAC+TGG - chr3_4:64979825-64979844 None:intergenic 60.0%
! ACGGACTGCCAGCAGGAACA+CGG - chr3_4:64979887-64979906 None:intergenic 60.0%
! GGTCTATACGGACTGCCAGC+AGG - chr3_4:64979894-64979913 None:intergenic 60.0%
GGACCAGCACCATACACCAG+TGG + chr3_4:64979927-64979946 Msa0514290:CDS 60.0%
GCTCCACTGGTGTATGGTGC+TGG - chr3_4:64979933-64979952 None:intergenic 60.0%
ACCATACACCAGTGGAGCCG+TGG + chr3_4:64979935-64979954 Msa0514290:CDS 60.0%
ACCACGGCTCCACTGGTGTA+TGG - chr3_4:64979939-64979958 None:intergenic 60.0%
TACACCAGTGGAGCCGTGGT+TGG + chr3_4:64979939-64979958 Msa0514290:CDS 60.0%
AGTGGAGCCGTGGTTGGACA+CGG + chr3_4:64979945-64979964 Msa0514290:CDS 60.0%
GCGATCCAATAGCTGGGGCA+TGG - chr3_4:64980239-64980258 None:intergenic 60.0%
CCTAGTGCCCTGCTAAGGCA+AGG - chr3_4:64980788-64980807 None:intergenic 60.0%
! CCTTGCCTTAGCAGGGCACT+AGG + chr3_4:64980785-64980804 Msa0514290:intron 60.0%
GCATACCTGGGATCCGGGTT+TGG - chr3_4:64981040-64981059 None:intergenic 60.0%
AGGCAGCATACCTGGGATCC+GGG - chr3_4:64981045-64981064 None:intergenic 60.0%
AGTCCTGGCACGCTTGGCAG+CGG - chr3_4:64978331-64978350 None:intergenic 65.0%
GCCAAGCGTGCCAGGACTGA+TGG + chr3_4:64978333-64978352 Msa0514290:intron 65.0%
GTGTCCAACCACGGCTCCAC+TGG - chr3_4:64979946-64979965 None:intergenic 65.0%
CCTGGCCTAGTGCCCTGCTA+AGG - chr3_4:64980793-64980812 None:intergenic 65.0%
! CCTTAGCAGGGCACTAGGCC+AGG + chr3_4:64980790-64980809 Msa0514290:intron 65.0%
CACACCCAAACCCGGATCCC+AGG + chr3_4:64981032-64981051 Msa0514290:CDS 65.0%
CTTCCGCTGCCAAGCGTGCC+AGG + chr3_4:64978325-64978344 Msa0514290:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 64977873 64984158 64977873 ID=Msa0514290;Name=Msa0514290
chr3_4 mRNA 64977873 64984158 64977873 ID=Msa0514290-mRNA-1;Parent=Msa0514290;Name=Msa0514290-mRNA-1;_AED=0.03;_eAED=0.03;_QI=132|0.77|0.9|0.9|0.66|0.7|10|2101|338
chr3_4 exon 64977873 64978013 64977873 ID=Msa0514290-mRNA-1:exon:16382;Parent=Msa0514290-mRNA-1
chr3_4 exon 64978573 64978591 64978573 ID=Msa0514290-mRNA-1:exon:16383;Parent=Msa0514290-mRNA-1
chr3_4 exon 64978767 64978882 64978767 ID=Msa0514290-mRNA-1:exon:16384;Parent=Msa0514290-mRNA-1
chr3_4 exon 64979696 64979966 64979696 ID=Msa0514290-mRNA-1:exon:16385;Parent=Msa0514290-mRNA-1
chr3_4 exon 64980224 64980294 64980224 ID=Msa0514290-mRNA-1:exon:16386;Parent=Msa0514290-mRNA-1
chr3_4 exon 64980799 64980850 64980799 ID=Msa0514290-mRNA-1:exon:16387;Parent=Msa0514290-mRNA-1
chr3_4 exon 64980944 64981053 64980944 ID=Msa0514290-mRNA-1:exon:16388;Parent=Msa0514290-mRNA-1
chr3_4 exon 64981182 64981206 64981182 ID=Msa0514290-mRNA-1:exon:16389;Parent=Msa0514290-mRNA-1
chr3_4 exon 64981310 64982844 64981310 ID=Msa0514290-mRNA-1:exon:16390;Parent=Msa0514290-mRNA-1
chr3_4 exon 64983249 64984158 64983249 ID=Msa0514290-mRNA-1:exon:16391;Parent=Msa0514290-mRNA-1
chr3_4 five_prime_UTR 64977873 64978004 64977873 ID=Msa0514290-mRNA-1:five_prime_utr;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64978005 64978013 64978005 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64978573 64978591 64978573 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64978767 64978882 64978767 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64979696 64979966 64979696 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64980224 64980294 64980224 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64980799 64980850 64980799 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64980944 64981053 64980944 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64981182 64981206 64981182 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 CDS 64981310 64981653 64981310 ID=Msa0514290-mRNA-1:cds;Parent=Msa0514290-mRNA-1
chr3_4 three_prime_UTR 64981654 64982844 64981654 ID=Msa0514290-mRNA-1:three_prime_utr;Parent=Msa0514290-mRNA-1
chr3_4 three_prime_UTR 64983249 64984158 64983249 ID=Msa0514290-mRNA-1:three_prime_utr;Parent=Msa0514290-mRNA-1
Gene Sequence

>Msa0514290

ATGTCTCAGTTGTGTAATTTTATGCTCTGTAGCCGCAGGGAAGATGATTGGACATGTCCCAGTTGCGGCAATGTCAATTTCTCTTTCAGGACAACCTGCAATATGCGTAACTGCACCCAACCAAGGCCTGCTGATCATAATTCTAAATCTGCTGTGAAGCCTCTTCAAGCTCCACAGGCCTATTCATCCGCAGCTCCTTATTTAGGCTCCAACGCCCCCCCTTCAATTTATATTGGTGCCCCACCTTATGGGTCTTTATTCAATGGATCACCAGTTCCCCCCTATGAGGTTCCATTTACTGGAGGATCAGCCTATCAGTACAGTTATGGAAGCCGTGTTCCTGCTGGCAGTCCGTATAGACCATTACATCTAGCAGGACCAGCACCATACACCAGTGGAGCCGTGGTTGGACACGGTGGGATATATGCCATGCCCCAGCTATTGGATCGCTATGGCCTTGGTGTCCCTATTGGACCTGGAGCAATGGGCACTAGGCCAGGATTTTTTCGCGATGACAAGTCTCAGAAAAAGGGACCAGATGCAACTCGTGACAATGATTGGGCTTGTCCAAAATGTGGTAACGTCAATTTCTCATTTAGAACTGTTTGCAACATGAGAAAATGCAACACACCCAAACCCGGATCCCAGGCCTCAAAGTCTGATAAGAACACTAAGCAAAAGATGCCGGAGGGAAGCTGGAAGTGTGAAAAATGTAATAACATAAATTACCCATTCCGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCGGAAAAATCTCCCTCATCATCTCCAGATCAAAATGAACAGGTTTGTTATGCAAAGCCTTTTCAATTTGCTAACCTTCATTTATTGTTGCAACAGAGATTGGTTTTTCATGAGCAGCTTTGTGACATAGTGAATATTTTCAAATTGAAAGCTGTTGTGAAGTTTTTGTTTAAATGTGTTTTTTCTGAAAAAGCTTCTCTTATGCTTCCTGTCATTTGGATTCTTTTGTTGTGA
Protein sequence

>Msa0514290

MSQLCNFMLCSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAVKPLQAPQAYSSAAPYLGSNAPPSIYIGAPPYGSLFNGSPVPPYEVPFTGGSAYQYSYGSRVPAGSPYRPLHLAGPAPYTSGAVVGHGGIYAMPQLLDRYGLGVPIGPGAMGTRPGFFRDDKSQKKGPDATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNTKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSSSPDQNEQVCYAKPFQFANLHLLLQQRLVFHEQLCDIVNIFKLKAVVKFLFKCVFSEKASLMLPVIWILLL*