AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1461250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461250 MtrunA17_Chr4g0072501 99.644 281 1 0 1 281 1 281 0.0 546
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461250 AT2G18840.1 80.070 286 47 4 1 281 1 281 2.84e-133 379
Msa1461250 AT4G30260.3 78.596 285 52 3 1 281 1 280 2.68e-126 361
Msa1461250 AT4G30260.1 78.596 285 52 3 1 281 1 280 2.68e-126 361
Msa1461250 AT4G30260.2 78.947 285 51 3 1 281 76 355 2.78e-125 361

Find 96 sgRNAs with CRISPR-Local

Find 309 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGAAGAGAGGAAAGAAAA+AGG 0.200703 tig0041402:-15063 Msa1461250:five_prime_UTR
CTTGGAATTCCCTTCTAAAT+AGG 0.205486 tig0041402:-11175 Msa1461250:three_prime_UTR
CTTTGCGTGATTGGGATCTT+TGG 0.212274 tig0041402:-14508 Msa1461250:CDS
TCTTAGGTCTCACTCTTTCT+TGG 0.230737 tig0041402:-14463 Msa1461250:CDS
GAGGGGTGAGAAGAGGATTT+GGG 0.249482 tig0041402:+14740 Msa1461250:intergenic
AGAGGGGTGAGAAGAGGATT+TGG 0.272320 tig0041402:+14739 Msa1461250:intergenic
TTTGCGTGATTGGGATCTTT+GGG 0.284611 tig0041402:-14507 Msa1461250:CDS
GACATTGAATGTCCTGCTTC+TGG 0.295731 tig0041402:-11851 Msa1461250:intron
CTGGTAAGGCTTTGCGTGAT+TGG 0.311351 tig0041402:-14517 Msa1461250:CDS
CGAGATGGTTGCAGCAAGTT+TGG 0.311945 tig0041402:+11007 Msa1461250:intergenic
TTACCAGGATCTTCACGATT+AGG 0.314504 tig0041402:+14533 Msa1461250:intergenic
TACCTTGACTGAACCTGTTT+GGG 0.319249 tig0041402:-14618 Msa1461250:CDS
GAAGAAGGAGGAGGAGGAAG+AGG 0.324483 tig0041402:+14686 Msa1461250:intergenic
TGACATTGGCGTGGAGCTCT+TGG 0.332939 tig0041402:-11350 Msa1461250:CDS
TACCAGGATCTTCACGATTA+GGG 0.334276 tig0041402:+14534 Msa1461250:intergenic
TTGGTCTGCTTCTGTCAAAA+AGG 0.353322 tig0041402:-14444 Msa1461250:intron
ATACCTTGACTGAACCTGTT+TGG 0.358956 tig0041402:-14619 Msa1461250:CDS
GCATTTGCCTTACTTGCTGC+TGG 0.365044 tig0041402:-11886 Msa1461250:CDS
GAAGGAGGAGGAGGAAGAGG+AGG 0.377972 tig0041402:+14689 Msa1461250:intergenic
AGGGGTGAGAAGAGGATTTG+GGG 0.387373 tig0041402:+14741 Msa1461250:intergenic
TGGTAAGGCTTTGCGTGATT+GGG 0.399572 tig0041402:-14516 Msa1461250:CDS
GAATCCGGAGGTGGAGATAT+CGG 0.401634 tig0041402:+14655 Msa1461250:intergenic
CGGGTAGAAGAAGGAGGAGG+AGG 0.413219 tig0041402:+14680 Msa1461250:intergenic
TGCTTATTCCCTCTTGATGT+TGG 0.413824 tig0041402:-11429 Msa1461250:CDS
CGATCTCGTCGATGTCAGAT+TGG 0.423884 tig0041402:+14894 Msa1461250:intergenic
ACAGGTTCAGTCAAGGTATT+GGG 0.426001 tig0041402:+14623 Msa1461250:intergenic
GATATCTCCACCTCCGGATT+CGG 0.429359 tig0041402:-14653 Msa1461250:CDS
AACCGAGCAGACTCAGACTC+TGG 0.433237 tig0041402:+11454 Msa1461250:intergenic
GATCTCGTCGATGTCAGATT+GGG 0.440020 tig0041402:+14895 Msa1461250:intergenic
GACATTGGCGTGGAGCTCTT+GGG 0.445245 tig0041402:-11349 Msa1461250:CDS
AGAGGAGGGAGAGAAGAAGA+AGG 0.446255 tig0041402:+14704 Msa1461250:intergenic
GGATCTTCACGATTAGGGTT+AGG 0.446271 tig0041402:+14539 Msa1461250:intergenic
AACAGGTTCAGTCAAGGTAT+TGG 0.450830 tig0041402:+14622 Msa1461250:intergenic
GAACAATGTTATAGTAAAAG+TGG 0.451640 tig0041402:-11385 Msa1461250:CDS
TTTCAAATTACTAACAATCC+TGG 0.451701 tig0041402:+14574 None:intergenic
GAAGAAGTGGAAGAAGTGAC+GGG 0.456726 tig0041402:+14800 None:intergenic
AAGGAGGAGGAGGAAGAGGA+GGG 0.458852 tig0041402:+14690 None:intergenic
GGATGATGCGTGAAGGGGTA+TGG 0.460845 tig0041402:+14916 None:intergenic
GAGGAGGGAGAGAAGAAGAA+GGG 0.465284 tig0041402:+14705 None:intergenic
AGAAGAAGTGGAAGAAGTGA+CGG 0.467329 tig0041402:+14799 None:intergenic
CTAAAATTTGGCATTTACAT+TGG 0.472904 tig0041402:-15135 None:intergenic
TACAGCACCAGCAGCAAGTA+AGG 0.473133 tig0041402:+11879 Msa1461250:intergenic
ATTGAAGCGCGTGGAGGAGA+TGG 0.474354 tig0041402:+14824 Msa1461250:intergenic
TTTCTCATGTATGTATCTGT+TGG 0.477366 tig0041402:-11261 Msa1461250:CDS
TGGGAGAGAGGGGTGAGAAG+AGG 0.477680 tig0041402:+14733 Msa1461250:intergenic
AATCCGGAGGTGGAGATATC+GGG 0.479157 tig0041402:+14656 Msa1461250:intergenic
ACATTGATGCATTTAGTCAA+TGG 0.480573 tig0041402:+11224 Msa1461250:intergenic
GGAGGAGATGGTGGACGAGC+AGG 0.480676 tig0041402:+14836 Msa1461250:intergenic
ATTGGGAGCAGGTCCGAATC+CGG 0.481172 tig0041402:+14640 Msa1461250:intergenic
AAATCTCATTTACGCTTCTC+CGG 0.482794 tig0041402:-14870 Msa1461250:CDS
CTGTCAAAAGAGATCTCTCC+AGG 0.485149 tig0041402:-14592 Msa1461250:CDS
GGGTGCGGGATTAGGAAGAT+TGG 0.490046 tig0041402:+14763 Msa1461250:intergenic
ATTAATGCACCAACATCAAG+AGG 0.490162 tig0041402:+11420 Msa1461250:intergenic
CAATCACGCAAAGCCTTACC+AGG 0.493751 tig0041402:+14518 Msa1461250:intergenic
TTCCAGAGTCTGAGTCTGCT+CGG 0.495796 tig0041402:-11456 Msa1461250:CDS
ACTTTATTCAGATAACTACT+TGG 0.497219 tig0041402:-11193 Msa1461250:three_prime_UTR
ATTGATGAAAGGAGAAGAAG+TGG 0.504994 tig0041402:+14787 Msa1461250:intergenic
CGAGCAGGAAGAACGGTGGC+CGG 0.505096 tig0041402:+14851 Msa1461250:intergenic
AACCCTAATCGTGAAGATCC+TGG 0.505934 tig0041402:-14536 Msa1461250:CDS
AGCAGGTCCGAATCCGGAGG+TGG 0.512160 tig0041402:+14646 Msa1461250:intergenic
TGTTATAGTAAAAGTGGTAG+TGG 0.523207 tig0041402:-11379 Msa1461250:CDS
AAGAAAACAATGAAGAAGAA+AGG 0.524288 tig0041402:+14482 Msa1461250:intergenic
AGGAGGGAGAGAAGAAGAAG+GGG 0.529098 tig0041402:+14706 Msa1461250:intergenic
TCAGTCAAGGTATTGGGAGC+AGG 0.534017 tig0041402:+14629 Msa1461250:intergenic
ATATCGGGTCGGGTAGAAGA+AGG 0.534230 tig0041402:+14671 Msa1461250:intergenic
GGAAGATTGGAATTGATGAA+AGG 0.538609 tig0041402:+14776 Msa1461250:intergenic
GGGGTGAGAAGAGGATTTGG+GGG 0.544891 tig0041402:+14742 Msa1461250:intergenic
AAGAGGCTATTACCAGAAGC+AGG 0.553367 tig0041402:+11839 Msa1461250:intergenic
AATGATTGTATAATATTACA+TGG 0.560624 tig0041402:-11044 Msa1461250:three_prime_UTR
TAATCGTGAAGATCCTGGTA+AGG 0.562164 tig0041402:-14531 Msa1461250:CDS
TTGCGTGATTGGGATCTTTG+GGG 0.563543 tig0041402:-14506 Msa1461250:CDS
GGAGGTGGAGATATCGGGTC+GGG 0.565498 tig0041402:+14661 Msa1461250:intergenic
CGACCCGATATCTCCACCTC+CGG 0.582016 tig0041402:-14659 Msa1461250:CDS
GGGTGAGAAGAGGATTTGGG+GGG 0.585558 tig0041402:+14743 Msa1461250:intergenic
AGGGTAACAAAGAATACGAT+AGG 0.592932 tig0041402:+11132 Msa1461250:intergenic
TGGTGGACGAGCAGGAAGAA+CGG 0.593661 tig0041402:+14844 Msa1461250:intergenic
AGATTGGGATGATGCGTGAA+GGG 0.609226 tig0041402:+14910 Msa1461250:intergenic
ATGAGCTAAATTAAGAAGAG+AGG 0.610520 tig0041402:-15074 Msa1461250:five_prime_UTR
GAAGCGCGTGGAGGAGATGG+TGG 0.610651 tig0041402:+14827 Msa1461250:intergenic
GGAGGGAGAGAAGAAGAAGG+GGG 0.622958 tig0041402:+14707 Msa1461250:intergenic
ATCCCAAACAGGTTCAGTCA+AGG 0.623683 tig0041402:+14616 Msa1461250:intergenic
CAGATTGGGATGATGCGTGA+AGG 0.631170 tig0041402:+14909 Msa1461250:intergenic
GGTCGGGTAGAAGAAGGAGG+AGG 0.638800 tig0041402:+14677 Msa1461250:intergenic
GTGACGGGGATTGAAGCGCG+TGG 0.640207 tig0041402:+14815 Msa1461250:intergenic
TTGACTGCAGAACTCATGAA+AGG 0.643060 tig0041402:+11318 Msa1461250:intergenic
TGGTATGTGTGACATTGGCG+TGG 0.645314 tig0041402:-11359 Msa1461250:CDS
AAGAAGTGGAAGAAGTGACG+GGG 0.646121 tig0041402:+14801 Msa1461250:intergenic
GGTAGTGGTATGTGTGACAT+TGG 0.650583 tig0041402:-11364 Msa1461250:CDS
GGGAGCAGGTCCGAATCCGG+AGG 0.659096 tig0041402:+14643 None:intergenic
GATTGGGATGATGCGTGAAG+GGG 0.661855 tig0041402:+14911 None:intergenic
GGGGCGCGAGTACAAAAGAA+GGG 0.663933 tig0041402:+11113 None:intergenic
CGGAGGTGGAGATATCGGGT+CGG 0.667947 tig0041402:+14660 None:intergenic
ACGGGGATTGAAGCGCGTGG+AGG 0.669835 tig0041402:+14818 None:intergenic
TTAATGCACCAACATCAAGA+GGG 0.688001 tig0041402:+11421 None:intergenic
TCGGGTCGGGTAGAAGAAGG+AGG 0.689505 tig0041402:+14674 None:intergenic
TGGACGAGCAGGAAGAACGG+TGG 0.746906 tig0041402:+14847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAATCAAATCAAAT+TGG + tig0041402:11035-11054 Msa1140510:intergenic 10.0%
!! AATTATGTAGTTTATATTAT+TGG + tig0041402:13285-13304 Msa1461250:intergenic 10.0%
!! AATAATATAAACTACATAAT+TGG - tig0041402:13284-13303 Msa1461250:intron 10.0%
!! ATAATATAAACTACATAATT+GGG - tig0041402:13285-13304 Msa1461250:intron 10.0%
!! ATTGAAATTGAAAGAAAAAA+AGG - tig0041402:11141-11160 Msa1461250:three_prime_UTR 15.0%
!! CTAGATACATTTATTATATA+TGG - tig0041402:12092-12111 Msa1461250:intron 15.0%
!!! ATTTTGATAGAAATATAACT+TGG - tig0041402:12647-12666 Msa1461250:intron 15.0%
!!! TATGAATTTTCATTTTTGTT+GGG - tig0041402:14055-14074 Msa1461250:intron 15.0%
!! ATATATAGTATAAAAGACAA+AGG + tig0041402:14103-14122 Msa1461250:intergenic 15.0%
!! AATGATTGTATAATATTACA+TGG - tig0041402:15100-15119 Msa1461250:five_prime_UTR 15.0%
!! AATTCAATTTATTATGAGTC+CGG + tig0041402:12290-12309 Msa1461250:intergenic 20.0%
!!! ATAAAGTTTTTACTTCTCTA+GGG + tig0041402:12445-12464 Msa1461250:intergenic 20.0%
!!! AATAAAGTTTTTACTTCTCT+AGG + tig0041402:12446-12465 Msa1461250:intergenic 20.0%
!! CAGACAATTAAAAAAAAACA+GGG + tig0041402:12497-12516 Msa1461250:intergenic 20.0%
!! ACAGACAATTAAAAAAAAAC+AGG + tig0041402:12498-12517 Msa1461250:intergenic 20.0%
!! TGTCTGTATATATGTTTATA+AGG - tig0041402:12511-12530 Msa1461250:intron 20.0%
!! TGTATATATGTTTATAAGGA+TGG - tig0041402:12515-12534 Msa1461250:intron 20.0%
!! AATAAATTGTTAGATGTTAG+CGG + tig0041402:12594-12613 Msa1461250:intergenic 20.0%
!!! AGTTCAAAAAACAGTTTTAT+AGG + tig0041402:12693-12712 Msa1461250:intergenic 20.0%
!! AAAACAAATTATGCATTTCT+AGG + tig0041402:12835-12854 Msa1461250:intergenic 20.0%
!!! ATTATTTGATGGCAAAATAT+TGG + tig0041402:13405-13424 Msa1461250:intergenic 20.0%
!! CTAATACTCAAATTATTTGA+TGG + tig0041402:13416-13435 Msa1461250:intergenic 20.0%
!! CATCAAATAATTTGAGTATT+AGG - tig0041402:13414-13433 Msa1461250:intron 20.0%
!! AATTCAAAGAAAAACATGTT+GGG + tig0041402:13480-13499 Msa1461250:intergenic 20.0%
!! AAATTCAAAGAAAAACATGT+TGG + tig0041402:13481-13500 Msa1461250:intergenic 20.0%
!!! TTTTGAAGTTTTCATTTGAT+GGG - tig0041402:13526-13545 Msa1461250:intron 20.0%
!! TACTAACCATTTATAGAAAA+TGG - tig0041402:14030-14049 Msa1461250:intron 20.0%
!!! CTATGAATTTTCATTTTTGT+TGG - tig0041402:14054-14073 Msa1461250:intron 20.0%
!!! ATGAATTTTCATTTTTGTTG+GGG - tig0041402:14056-14075 Msa1461250:intron 20.0%
!! AAAGTTAAAAGCTCATAAAA+TGG + tig0041402:14347-14366 Msa1461250:intergenic 20.0%
!!! ATCTGTTTTGATGTATAAAA+AGG - tig0041402:14555-14574 Msa1461250:CDS 20.0%
!! GAAGATTTAATTGTATCATA+AGG - tig0041402:14577-14596 Msa1461250:CDS 20.0%
!! ACAAAAATTCCTATTTAGAA+GGG + tig0041402:14981-15000 Msa1461250:intergenic 20.0%
!! AACAAAAATTCCTATTTAGA+AGG + tig0041402:14982-15001 Msa1461250:intergenic 20.0%
!! TATCAAACAGAAAAAGAAAA+GGG + tig0041402:15055-15074 Msa1461250:intergenic 20.0%
!! ATATCAAACAGAAAAAGAAA+AGG + tig0041402:15056-15075 Msa1461250:intergenic 20.0%
! TTTCAAATTACTAACAATCC+TGG + tig0041402:11573-11592 Msa1461250:intergenic 25.0%
! AAGAAAACAATGAAGAAGAA+AGG + tig0041402:11665-11684 Msa1461250:intergenic 25.0%
!! TTCTTCTTCATTGTTTTCTT+AGG - tig0041402:11665-11684 Msa1461250:intron 25.0%
! AATCTGATATTATGTTGATG+TGG - tig0041402:11794-11813 Msa1461250:intron 25.0%
! AGGAAATTGGATATAGTAAA+TGG - tig0041402:11943-11962 Msa1461250:intron 25.0%
! GATTCAAGTATAATTCTAAC+AGG + tig0041402:12073-12092 Msa1461250:intergenic 25.0%
! TTGTTAATTATGCTCTTATC+CGG - tig0041402:12268-12287 Msa1461250:intron 25.0%
!!! AACCTAAATGTTTTTTGGAA+AGG + tig0041402:12625-12644 Msa1461250:intergenic 25.0%
!!! AATGCAACCTAAATGTTTTT+TGG + tig0041402:12630-12649 Msa1461250:intergenic 25.0%
! ATATGTTCATGTTACGATTT+AGG + tig0041402:12966-12985 Msa1461250:intergenic 25.0%
!! ACCATATAATGGAAAGAAAT+AGG - tig0041402:13146-13165 Msa1461250:intron 25.0%
!! CCATATAATGGAAAGAAATA+GGG - tig0041402:13147-13166 Msa1461250:intron 25.0%
!! CATATAATGGAAAGAAATAG+GGG - tig0041402:13148-13167 Msa1461250:intron 25.0%
!! TAATTATTGTGAAGCACTTT+CGG + tig0041402:13250-13269 Msa1461250:intergenic 25.0%
! TATTGTCATTACTAGTATTC+CGG + tig0041402:13378-13397 Msa1461250:intergenic 25.0%
!!! TGTTGGGTTATTTTAAAACT+TGG + tig0041402:13464-13483 Msa1461250:intergenic 25.0%
!!! GTTTTGAAGTTTTCATTTGA+TGG - tig0041402:13525-13544 Msa1461250:intron 25.0%
!!! TTTTTAGTAAACAAGAACTG+TGG - tig0041402:13550-13569 Msa1461250:intron 25.0%
! ATATGCTTTATAGAACTGAA+TGG + tig0041402:13626-13645 Msa1461250:intergenic 25.0%
! CTATAAAGCATATAACTCAT+TGG - tig0041402:13633-13652 Msa1461250:intron 25.0%
! GAAATAATCATCCTAATAGT+TGG + tig0041402:13738-13757 Msa1461250:intergenic 25.0%
! ACTATTAGGATGATTATTTC+AGG - tig0041402:13738-13757 Msa1461250:intron 25.0%
!! CATAGTCCATTTTCTATAAA+TGG + tig0041402:14039-14058 Msa1461250:intergenic 25.0%
!!! TGAATTTTCATTTTTGTTGG+GGG - tig0041402:14057-14076 Msa1461250:intron 25.0%
! GAACAATGTTATAGTAAAAG+TGG - tig0041402:14759-14778 Msa1461250:CDS 25.0%
! ATACATACATGAGAAAAACA+GGG + tig0041402:14879-14898 Msa1461250:intergenic 25.0%
! ACTTTATTCAGATAACTACT+TGG - tig0041402:14951-14970 Msa1461250:exon 25.0%
! ATCAAACAGAAAAAGAAAAG+GGG + tig0041402:15054-15073 Msa1461250:intergenic 25.0%
ATGAGCTAAATTAAGAAGAG+AGG - tig0041402:11070-11089 Msa1461250:three_prime_UTR 30.0%
TAAGAAGAGAGGAAAGAAAA+AGG - tig0041402:11081-11100 Msa1461250:three_prime_UTR 30.0%
AAGAAGAGAGGAAAGAAAAA+GGG - tig0041402:11082-11101 Msa1461250:three_prime_UTR 30.0%
TGATATTATGTTGATGTGGA+AGG - tig0041402:11798-11817 Msa1461250:intron 30.0%
CATTCTAATCTGAACTGAAT+AGG + tig0041402:11867-11886 Msa1461250:intergenic 30.0%
TACGAAATTTCCATGTAACT+AGG - tig0041402:11923-11942 Msa1461250:intron 30.0%
TTTCCATGTAACTAGGAAAT+TGG - tig0041402:11930-11949 Msa1461250:intron 30.0%
TATCCAATTTCCTAGTTACA+TGG + tig0041402:11936-11955 Msa1461250:intergenic 30.0%
GTCAACTTCTACAAGAAAAA+TGG + tig0041402:12000-12019 Msa1461250:intergenic 30.0%
TTAATGCGCATGATATTAGT+AGG - tig0041402:12027-12046 Msa1461250:intron 30.0%
TTTATATGTTCCAATCCCTT+TGG + tig0041402:12416-12435 Msa1461250:intergenic 30.0%
ATATGTTTATAAGGATGGCT+TGG - tig0041402:12520-12539 Msa1461250:intron 30.0%
TGCCTTTCCAAAAAACATTT+AGG - tig0041402:12620-12639 Msa1461250:intron 30.0%
GCATGCATTACTAATCTATA+GGG + tig0041402:12765-12784 Msa1461250:intergenic 30.0%
! TATGCATTTCTAGGTAATGA+GGG + tig0041402:12826-12845 Msa1461250:intergenic 30.0%
! TTATGCATTTCTAGGTAATG+AGG + tig0041402:12827-12846 Msa1461250:intergenic 30.0%
!!! TGCATAATTTGTTTTCTGCA+TGG - tig0041402:12840-12859 Msa1461250:intron 30.0%
!!! GCATAATTTGTTTTCTGCAT+GGG - tig0041402:12841-12860 Msa1461250:intron 30.0%
! AACGATAAAGTTTTCTGCAT+TGG - tig0041402:12868-12887 Msa1461250:intron 30.0%
! TCATGTTACGATTTAGGATT+AGG + tig0041402:12960-12979 Msa1461250:intergenic 30.0%
TTCTGAACGTATTTGTAGTT+AGG + tig0041402:12995-13014 Msa1461250:intergenic 30.0%
ATGAAATATGTGTGCCTAAA+TGG - tig0041402:13114-13133 Msa1461250:intron 30.0%
TGAAATATGTGTGCCTAAAT+GGG - tig0041402:13115-13134 Msa1461250:intron 30.0%
! CCCTATTTCTTTCCATTATA+TGG + tig0041402:13150-13169 Msa1461250:intergenic 30.0%
TAGGTACAATTAATCTGACT+AGG - tig0041402:13433-13452 Msa1461250:intron 30.0%
! TGAATTTTTCCTTAGATAGC+TGG - tig0041402:13494-13513 Msa1461250:intron 30.0%
TAATCATCCTAATAGTTGGA+TGG + tig0041402:13734-13753 Msa1461250:intergenic 30.0%
! ACTATGACATCAGCTTATTT+TGG + tig0041402:13783-13802 Msa1461250:intergenic 30.0%
GGTAAAATTATACACGCTAT+TGG + tig0041402:13985-14004 Msa1461250:intergenic 30.0%
!! GAATTTTCATTTTTGTTGGG+GGG - tig0041402:14058-14077 Msa1461250:intron 30.0%
! CTTTTGCTTATATTAGTGAC+CGG + tig0041402:14525-14544 Msa1461250:intergenic 30.0%
! CTTTTGCTTATATTAGTGAC+CGG - tig0041402:14525-14544 Msa1461250:CDS 30.0%
TGTTATAGTAAAAGTGGTAG+TGG - tig0041402:14765-14784 Msa1461250:CDS 30.0%
GATACATACATGAGAAAAAC+AGG + tig0041402:14880-14899 Msa1461250:intergenic 30.0%
TTTCTCATGTATGTATCTGT+TGG - tig0041402:14883-14902 Msa1461250:CDS 30.0%
ACATTGATGCATTTAGTCAA+TGG + tig0041402:14923-14942 Msa1461250:intergenic 30.0%
TCAAACAGAAAAAGAAAAGG+GGG + tig0041402:15053-15072 Msa1461250:intergenic 30.0%
AAATCTCATTTACGCTTCTC+CGG - tig0041402:11274-11293 Msa1461250:CDS 35.0%
ATTGATGAAAGGAGAAGAAG+TGG + tig0041402:11360-11379 Msa1461250:intergenic 35.0%
GGAAGATTGGAATTGATGAA+AGG + tig0041402:11371-11390 Msa1461250:intergenic 35.0%
TATAGTAAATGGTTCCTGTG+CGG - tig0041402:11954-11973 Msa1461250:intron 35.0%
GCCAATGATCTTATGCATTT+CGG - tig0041402:12145-12164 Msa1461250:intron 35.0%
CCAATGATCTTATGCATTTC+GGG - tig0041402:12146-12165 Msa1461250:intron 35.0%
! TTTCGGGTACATTGATTGTT+TGG - tig0041402:12162-12181 Msa1461250:intron 35.0%
CTCAGATTCTCTTCAATTTG+TGG - tig0041402:12315-12334 Msa1461250:intron 35.0%
CGAATTTATACCAAAGGGAT+TGG - tig0041402:12403-12422 Msa1461250:intron 35.0%
AGGAAGTCAGAGAAAGAATA+CGG + tig0041402:12673-12692 Msa1461250:intergenic 35.0%
CGCATGCATTACTAATCTAT+AGG + tig0041402:12766-12785 Msa1461250:intergenic 35.0%
TCATTCAAATCTGCACATTC+AGG + tig0041402:13021-13040 Msa1461250:intergenic 35.0%
AAAAGGTTGCAAACAGATCA+GGG + tig0041402:13046-13065 Msa1461250:intergenic 35.0%
CACACATATTTCATCACTAG+TGG + tig0041402:13108-13127 Msa1461250:intergenic 35.0%
! TCTTTTTCTTCTCCATGAGT+CGG - tig0041402:13834-13853 Msa1461250:intron 35.0%
AACTGAAAGCTAACTTTGCA+TGG + tig0041402:13902-13921 Msa1461250:intergenic 35.0%
!! TGCAAAGTTAGCTTTCAGTT+TGG - tig0041402:13902-13921 Msa1461250:intron 35.0%
! CTTTCAGTTTGGAATCTGTA+GGG - tig0041402:13913-13932 Msa1461250:intron 35.0%
ACTGACCAAATTCATTTGAC+AGG + tig0041402:14178-14197 Msa1461250:intergenic 35.0%
! CTTTTTATTGTCTCAGTCTG+AGG - tig0041402:14224-14243 Msa1461250:intron 35.0%
AGTGTCATATTTACTTGTCG+AGG - tig0041402:14372-14391 Msa1461250:intron 35.0%
AGCCTAATTGAGAGTCAAAA+AGG - tig0041402:14601-14620 Msa1461250:CDS 35.0%
GCCTAATTGAGAGTCAAAAA+GGG - tig0041402:14602-14621 Msa1461250:CDS 35.0%
! TTCGTCTCTTCAACTTTTCA+GGG - tig0041402:14649-14668 Msa1461250:CDS 35.0%
TTAATGCACCAACATCAAGA+GGG + tig0041402:14726-14745 Msa1461250:intergenic 35.0%
ATTAATGCACCAACATCAAG+AGG + tig0041402:14727-14746 Msa1461250:intergenic 35.0%
CTTGGAATTCCCTTCTAAAT+AGG - tig0041402:14969-14988 Msa1461250:five_prime_UTR 35.0%
AGGGTAACAAAGAATACGAT+AGG + tig0041402:15015-15034 Msa1461250:intergenic 35.0%
AGAAGAAGTGGAAGAAGTGA+CGG + tig0041402:11348-11367 Msa1461250:intergenic 40.0%
! ACAGGTTCAGTCAAGGTATT+GGG + tig0041402:11524-11543 Msa1461250:intergenic 40.0%
AACAGGTTCAGTCAAGGTAT+TGG + tig0041402:11525-11544 Msa1461250:intergenic 40.0%
ATACCTTGACTGAACCTGTT+TGG - tig0041402:11525-11544 Msa1461250:intron 40.0%
TACCTTGACTGAACCTGTTT+GGG - tig0041402:11526-11545 Msa1461250:intron 40.0%
! CTTTTGACAGTATCCCAAAC+AGG + tig0041402:11542-11561 Msa1461250:intergenic 40.0%
TACCAGGATCTTCACGATTA+GGG + tig0041402:11613-11632 Msa1461250:intergenic 40.0%
TTACCAGGATCTTCACGATT+AGG + tig0041402:11614-11633 Msa1461250:intergenic 40.0%
TAATCGTGAAGATCCTGGTA+AGG - tig0041402:11613-11632 Msa1461250:intron 40.0%
TTTGCGTGATTGGGATCTTT+GGG - tig0041402:11637-11656 Msa1461250:intron 40.0%
TCTTAGGTCTCACTCTTTCT+TGG - tig0041402:11681-11700 Msa1461250:intron 40.0%
TTGGTCTGCTTCTGTCAAAA+AGG - tig0041402:11700-11719 Msa1461250:intron 40.0%
CCCGAAATGCATAAGATCAT+TGG + tig0041402:12149-12168 Msa1461250:intergenic 40.0%
TCTGCGCGAATTTATACCAA+AGG - tig0041402:12397-12416 Msa1461250:intron 40.0%
CTGCGCGAATTTATACCAAA+GGG - tig0041402:12398-12417 Msa1461250:intron 40.0%
! TGTTTATAAGGATGGCTTGG+TGG - tig0041402:12523-12542 Msa1461250:intron 40.0%
! TTGGGAGTTTGGAGTCATAA+GGG - tig0041402:12546-12565 Msa1461250:intron 40.0%
GAAAAGGTTGCAAACAGATC+AGG + tig0041402:13047-13066 Msa1461250:intergenic 40.0%
TCACTCACACACAACAGAAA+AGG + tig0041402:13063-13082 Msa1461250:intergenic 40.0%
! TTTTCTGTTGTGTGTGAGTG+AGG - tig0041402:13062-13081 Msa1461250:intron 40.0%
ATGGTATAGCTGTCCCATTT+AGG + tig0041402:13131-13150 Msa1461250:intergenic 40.0%
GGGACAGCTATACCATATAA+TGG - tig0041402:13135-13154 Msa1461250:intron 40.0%
!! CTTATGTGGACTAGCTATGA+TGG + tig0041402:13206-13225 Msa1461250:intergenic 40.0%
! TGTGAAGCACTTTCGGTAAT+GGG + tig0041402:13243-13262 Msa1461250:intergenic 40.0%
! TTGTGAAGCACTTTCGGTAA+TGG + tig0041402:13244-13263 Msa1461250:intergenic 40.0%
CTAAGTACTCCAGCTATCTA+AGG + tig0041402:13506-13525 Msa1461250:intergenic 40.0%
! GCAGCAATTCTGAAAACTGT+TGG + tig0041402:13579-13598 Msa1461250:intergenic 40.0%
TGATAGATGCAAGTAAGAGC+TGG - tig0041402:13659-13678 Msa1461250:intron 40.0%
CCTAATAGTTGGATGGTCTT+GGG + tig0041402:13727-13746 Msa1461250:intergenic 40.0%
TCCTAATAGTTGGATGGTCT+TGG + tig0041402:13728-13747 Msa1461250:intergenic 40.0%
TTTCCCTTTATCCTTTCTGC+TGG - tig0041402:13874-13893 Msa1461250:intron 40.0%
TTCCCTTTATCCTTTCTGCT+GGG - tig0041402:13875-13894 Msa1461250:intron 40.0%
! GCTTTCAGTTTGGAATCTGT+AGG - tig0041402:13912-13931 Msa1461250:intron 40.0%
AGCAATACAGGAGTGAAACT+TGG + tig0041402:14006-14025 Msa1461250:intergenic 40.0%
GGTTAGTACAAGAGCAATAC+AGG + tig0041402:14018-14037 Msa1461250:intergenic 40.0%
CACGACCTGTCAAATGAATT+TGG - tig0041402:14170-14189 Msa1461250:intron 40.0%
GTGAGATGAAAGAGAGAAAG+AGG + tig0041402:14325-14344 Msa1461250:intergenic 40.0%
GTGTTGTAAAATACTCCCTC+CGG - tig0041402:14394-14413 Msa1461250:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG + tig0041402:14529-14548 Msa1461250:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + tig0041402:14528-14547 Msa1461250:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG - tig0041402:14528-14547 Msa1461250:CDS 40.0%
TGCTTATATTAGTGACCGGA+GGG - tig0041402:14529-14548 Msa1461250:CDS 40.0%
ATCAAAACAGATACTCCCTC+CGG + tig0041402:14547-14566 Msa1461250:intergenic 40.0%
!! GCCCTTTTTGACTCTCAATT+AGG + tig0041402:14606-14625 Msa1461250:intergenic 40.0%
AATTGAGAGTCAAAAAGGGC+AGG - tig0041402:14606-14625 Msa1461250:CDS 40.0%
! CTTCGTCTCTTCAACTTTTC+AGG - tig0041402:14648-14667 Msa1461250:CDS 40.0%
TGCTTATTCCCTCTTGATGT+TGG - tig0041402:14715-14734 Msa1461250:CDS 40.0%
TTGACTGCAGAACTCATGAA+AGG + tig0041402:14829-14848 Msa1461250:intergenic 40.0%
! AGAGCAAGAGCTTTTCTTCT+GGG + tig0041402:14853-14872 Msa1461250:intergenic 40.0%
! AGGAAAGAAAAAGGGTGCGT+AGG - tig0041402:11090-11109 Msa1461250:three_prime_UTR 45.0%
AGATTGGGATGATGCGTGAA+GGG + tig0041402:11237-11256 Msa1461250:intergenic 45.0%
GATCTCGTCGATGTCAGATT+GGG + tig0041402:11252-11271 Msa1461250:intergenic 45.0%
AAGAAGTGGAAGAAGTGACG+GGG + tig0041402:11346-11365 Msa1461250:intergenic 45.0%
GAAGAAGTGGAAGAAGTGAC+GGG + tig0041402:11347-11366 Msa1461250:intergenic 45.0%
! GAGAAGAAGAAGGGGGTTTT+GGG + tig0041402:11433-11452 Msa1461250:intergenic 45.0%
! AGAGAAGAAGAAGGGGGTTT+TGG + tig0041402:11434-11453 Msa1461250:intergenic 45.0%
ATCCCAAACAGGTTCAGTCA+AGG + tig0041402:11531-11550 Msa1461250:intergenic 45.0%
CTGTCAAAAGAGATCTCTCC+AGG - tig0041402:11552-11571 Msa1461250:intron 45.0%
GGATCTTCACGATTAGGGTT+AGG + tig0041402:11608-11627 Msa1461250:intergenic 45.0%
AACCCTAATCGTGAAGATCC+TGG - tig0041402:11608-11627 Msa1461250:intron 45.0%
TGGTAAGGCTTTGCGTGATT+GGG - tig0041402:11628-11647 Msa1461250:intron 45.0%
CTTTGCGTGATTGGGATCTT+TGG - tig0041402:11636-11655 Msa1461250:intron 45.0%
TTGCGTGATTGGGATCTTTG+GGG - tig0041402:11638-11657 Msa1461250:intron 45.0%
ATTGTTTGGTACCCAGCCAA+AGG - tig0041402:12176-12195 Msa1461250:intron 45.0%
!! TATAAGGATGGCTTGGTGGT+TGG - tig0041402:12527-12546 Msa1461250:intron 45.0%
!! ATAAGGATGGCTTGGTGGTT+GGG - tig0041402:12528-12547 Msa1461250:intron 45.0%
! GTTGGGAGTTTGGAGTCATA+AGG - tig0041402:12545-12564 Msa1461250:intron 45.0%
GTTAGATGTTAGCGGAGAGT+GGG + tig0041402:12586-12605 Msa1461250:intergenic 45.0%
TGTTAGATGTTAGCGGAGAG+TGG + tig0041402:12587-12606 Msa1461250:intergenic 45.0%
ATGACCAACTGCAACTACTC+AGG - tig0041402:12896-12915 Msa1461250:intron 45.0%
TGACCAACTGCAACTACTCA+GGG - tig0041402:12897-12916 Msa1461250:intron 45.0%
AACTGCAACTACTCAGGGAA+GGG - tig0041402:12902-12921 Msa1461250:intron 45.0%
GCTTCTCTGTGTTAGATGAG+TGG - tig0041402:13170-13189 Msa1461250:intron 45.0%
! TGAATGCGGAAGGTCTTATG+TGG + tig0041402:13220-13239 Msa1461250:intergenic 45.0%
!! CTTTCGGTAATGGGTGAATG+CGG + tig0041402:13234-13253 Msa1461250:intergenic 45.0%
GAACTGAATGGCACGTTAGA+GGG + tig0041402:13614-13633 Msa1461250:intergenic 45.0%
AGAACTGAATGGCACGTTAG+AGG + tig0041402:13615-13634 Msa1461250:intergenic 45.0%
ATGCAAGTAAGAGCTGGTGA+TGG - tig0041402:13665-13684 Msa1461250:intron 45.0%
CCCAAGACCATCCAACTATT+AGG - tig0041402:13724-13743 Msa1461250:intron 45.0%
TTATTTCAGGCGTTCAGCAC+AGG - tig0041402:13751-13770 Msa1461250:intron 45.0%
TATTTCAGGCGTTCAGCACA+GGG - tig0041402:13752-13771 Msa1461250:intron 45.0%
TCAACAAGCAATCCGACTCA+TGG + tig0041402:13849-13868 Msa1461250:intergenic 45.0%
GTCCCAGCAGAAAGGATAAA+GGG + tig0041402:13880-13899 Msa1461250:intergenic 45.0%
TGGAATCTGTAGGGTTGTTG+AGG - tig0041402:13922-13941 Msa1461250:intron 45.0%
GGGGGGTTCAAATTCTAAGT+TGG - tig0041402:14075-14094 Msa1461250:intron 45.0%
!! GTCTCAGTCTGAGGTTTTTG+CGG - tig0041402:14233-14252 Msa1461250:intron 45.0%
GACATTGAATGTCCTGCTTC+TGG - tig0041402:14293-14312 Msa1461250:intron 45.0%
AAGAGGCTATTACCAGAAGC+AGG + tig0041402:14308-14327 Msa1461250:intergenic 45.0%
!! GTCTCTTCAACTTTTCAGGG+TGG - tig0041402:14652-14671 Msa1461250:CDS 45.0%
! GGTAGTGGTATGTGTGACAT+TGG - tig0041402:14780-14799 Msa1461250:CDS 45.0%
! GAGCAAGAGCTTTTCTTCTG+GGG + tig0041402:14852-14871 Msa1461250:intergenic 45.0%
! GAGAGCAAGAGCTTTTCTTC+TGG + tig0041402:14854-14873 Msa1461250:intergenic 45.0%
GATTGGGATGATGCGTGAAG+GGG + tig0041402:11236-11255 Msa1461250:intergenic 50.0%
CAGATTGGGATGATGCGTGA+AGG + tig0041402:11238-11257 Msa1461250:intergenic 50.0%
CGATCTCGTCGATGTCAGAT+TGG + tig0041402:11253-11272 Msa1461250:intergenic 50.0%
AGGGGTGAGAAGAGGATTTG+GGG + tig0041402:11406-11425 Msa1461250:intergenic 50.0%
GAGGGGTGAGAAGAGGATTT+GGG + tig0041402:11407-11426 Msa1461250:intergenic 50.0%
AGAGGGGTGAGAAGAGGATT+TGG + tig0041402:11408-11427 Msa1461250:intergenic 50.0%
AGGAGGGAGAGAAGAAGAAG+GGG + tig0041402:11441-11460 Msa1461250:intergenic 50.0%
GAGGAGGGAGAGAAGAAGAA+GGG + tig0041402:11442-11461 Msa1461250:intergenic 50.0%
AGAGGAGGGAGAGAAGAAGA+AGG + tig0041402:11443-11462 Msa1461250:intergenic 50.0%
ATATCGGGTCGGGTAGAAGA+AGG + tig0041402:11476-11495 Msa1461250:intergenic 50.0%
AATCCGGAGGTGGAGATATC+GGG + tig0041402:11491-11510 Msa1461250:intergenic 50.0%
GAATCCGGAGGTGGAGATAT+CGG + tig0041402:11492-11511 Msa1461250:intergenic 50.0%
GATATCTCCACCTCCGGATT+CGG - tig0041402:11491-11510 Msa1461250:intron 50.0%
!! TCAGTCAAGGTATTGGGAGC+AGG + tig0041402:11518-11537 Msa1461250:intergenic 50.0%
CAATCACGCAAAGCCTTACC+AGG + tig0041402:11629-11648 Msa1461250:intergenic 50.0%
CTGGTAAGGCTTTGCGTGAT+TGG - tig0041402:11627-11646 Msa1461250:intron 50.0%
TCCTGTGCGGTATTTCGATG+CGG - tig0041402:11967-11986 Msa1461250:intron 50.0%
CTACATATCCGAGCTGCCTT+TGG + tig0041402:12195-12214 Msa1461250:intergenic 50.0%
ATTCGCGCAGAGAAAGAGAG+CGG + tig0041402:12388-12407 Msa1461250:intergenic 50.0%
CTCGTCATCTCTGGCAAAGA+TGG - tig0041402:12787-12806 Msa1461250:intron 50.0%
CTTCCCTGAGTAGTTGCAGT+TGG + tig0041402:12903-12922 Msa1461250:intergenic 50.0%
CAACTGCAACTACTCAGGGA+AGG - tig0041402:12901-12920 Msa1461250:intron 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0041402:13353-13372 Msa1461250:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0041402:13350-13369 Msa1461250:intron 50.0%
CTTATCCCACTAAGTGGAGC+CGG - tig0041402:13356-13375 Msa1461250:intron 50.0%
GTATTCCGGCTCCACTTAGT+GGG + tig0041402:13364-13383 Msa1461250:intergenic 50.0%
AGTATTCCGGCTCCACTTAG+TGG + tig0041402:13365-13384 Msa1461250:intergenic 50.0%
AATGGCACGTTAGAGGGAGA+GGG + tig0041402:13608-13627 Msa1461250:intergenic 50.0%
ATTTCAGGCGTTCAGCACAG+GGG - tig0041402:13753-13772 Msa1461250:intron 50.0%
GGTCCCAGCAGAAAGGATAA+AGG + tig0041402:13881-13900 Msa1461250:intergenic 50.0%
TTTGCATGGTCCCAGCAGAA+AGG + tig0041402:13888-13907 Msa1461250:intergenic 50.0%
TAGGGTTGTTGAGGCCTTGA+GGG - tig0041402:13931-13950 Msa1461250:intron 50.0%
GCACTATATCATCCCCCTCA+AGG + tig0041402:13948-13967 Msa1461250:intergenic 50.0%
GAGGGGGATGATATAGTGCT+TGG - tig0041402:13949-13968 Msa1461250:intron 50.0%
! GCATTTGCCTTACTTGCTGC+TGG - tig0041402:14258-14277 Msa1461250:intron 50.0%
TACAGCACCAGCAGCAAGTA+AGG + tig0041402:14268-14287 Msa1461250:intergenic 50.0%
TTCCAGAGTCTGAGTCTGCT+CGG - tig0041402:14688-14707 Msa1461250:CDS 50.0%
TGGTATGTGTGACATTGGCG+TGG - tig0041402:14785-14804 Msa1461250:CDS 50.0%
GGATGATGCGTGAAGGGGTA+TGG + tig0041402:11231-11250 Msa1461250:intergenic 55.0%
! TGGTGGACGAGCAGGAAGAA+CGG + tig0041402:11303-11322 Msa1461250:intergenic 55.0%
ATTGAAGCGCGTGGAGGAGA+TGG + tig0041402:11323-11342 Msa1461250:intergenic 55.0%
GGGTGCGGGATTAGGAAGAT+TGG + tig0041402:11384-11403 Msa1461250:intergenic 55.0%
AGAAGAGGATTTGGGGGGTG+CGG + tig0041402:11399-11418 Msa1461250:intergenic 55.0%
GGGTGAGAAGAGGATTTGGG+GGG + tig0041402:11404-11423 Msa1461250:intergenic 55.0%
GGGGTGAGAAGAGGATTTGG+GGG + tig0041402:11405-11424 Msa1461250:intergenic 55.0%
!!! AAGGGGGTTTTGGGAGAGAG+GGG + tig0041402:11424-11443 Msa1461250:intergenic 55.0%
!!! GAAGGGGGTTTTGGGAGAGA+GGG + tig0041402:11425-11444 Msa1461250:intergenic 55.0%
!!! AGAAGGGGGTTTTGGGAGAG+AGG + tig0041402:11426-11445 Msa1461250:intergenic 55.0%
GGAGGGAGAGAAGAAGAAGG+GGG + tig0041402:11440-11459 Msa1461250:intergenic 55.0%
AAGGAGGAGGAGGAAGAGGA+GGG + tig0041402:11457-11476 Msa1461250:intergenic 55.0%
GAAGAAGGAGGAGGAGGAAG+AGG + tig0041402:11461-11480 Msa1461250:intergenic 55.0%
ATTGGGAGCAGGTCCGAATC+CGG + tig0041402:11507-11526 Msa1461250:intergenic 55.0%
TCCGCATCGAAATACCGCAC+AGG + tig0041402:11971-11990 Msa1461250:intergenic 55.0%
TATCCGAGCTGCCTTTGGCT+GGG + tig0041402:12190-12209 Msa1461250:intergenic 55.0%
ATATCCGAGCTGCCTTTGGC+TGG + tig0041402:12191-12210 Msa1461250:intergenic 55.0%
!! TGGCTTGGTGGTTGGGAGTT+TGG - tig0041402:12535-12554 Msa1461250:intron 55.0%
TGCATGCGACTCGTCATCTC+TGG - tig0041402:12778-12797 Msa1461250:intron 55.0%
!! CGGTAATGGGTGAATGCGGA+AGG + tig0041402:13230-13249 Msa1461250:intergenic 55.0%
CGGCTCCACTTAGTGGGATA+AGG + tig0041402:13358-13377 Msa1461250:intergenic 55.0%
GAATGGCACGTTAGAGGGAG+AGG + tig0041402:13609-13628 Msa1461250:intergenic 55.0%
GTAGGGTTGTTGAGGCCTTG+AGG - tig0041402:13930-13949 Msa1461250:intron 55.0%
AGGGTTGTTGAGGCCTTGAG+GGG - tig0041402:13932-13951 Msa1461250:intron 55.0%
AACCGAGCAGACTCAGACTC+TGG + tig0041402:14693-14712 Msa1461250:intergenic 55.0%
TGACATTGGCGTGGAGCTCT+TGG - tig0041402:14794-14813 Msa1461250:CDS 55.0%
GACATTGGCGTGGAGCTCTT+GGG - tig0041402:14795-14814 Msa1461250:CDS 55.0%
GGGGCGCGAGTACAAAAGAA+GGG + tig0041402:15034-15053 Msa1461250:intergenic 55.0%
TGGACGAGCAGGAAGAACGG+TGG + tig0041402:11300-11319 Msa1461250:intergenic 60.0%
! GATTTGGGGGGTGCGGGATT+AGG + tig0041402:11392-11411 Msa1461250:intergenic 60.0%
! GAAGAGGATTTGGGGGGTGC+GGG + tig0041402:11398-11417 Msa1461250:intergenic 60.0%
TGGGAGAGAGGGGTGAGAAG+AGG + tig0041402:11414-11433 Msa1461250:intergenic 60.0%
GAAGGAGGAGGAGGAAGAGG+AGG + tig0041402:11458-11477 Msa1461250:intergenic 60.0%
CGGGTAGAAGAAGGAGGAGG+AGG + tig0041402:11467-11486 Msa1461250:intergenic 60.0%
GGTCGGGTAGAAGAAGGAGG+AGG + tig0041402:11470-11489 Msa1461250:intergenic 60.0%
TCGGGTCGGGTAGAAGAAGG+AGG + tig0041402:11473-11492 Msa1461250:intergenic 60.0%
GGAGGTGGAGATATCGGGTC+GGG + tig0041402:11486-11505 Msa1461250:intergenic 60.0%
CGGAGGTGGAGATATCGGGT+CGG + tig0041402:11487-11506 Msa1461250:intergenic 60.0%
CGACCCGATATCTCCACCTC+CGG - tig0041402:11485-11504 Msa1461250:intron 60.0%
GTACCCAGCCAAAGGCAGCT+CGG - tig0041402:12184-12203 Msa1461250:intron 60.0%
CGTTAGAGGGAGAGGGAAGC+AGG + tig0041402:13601-13620 Msa1461250:intergenic 60.0%
GGGTTGTTGAGGCCTTGAGG+GGG - tig0041402:13933-13952 Msa1461250:intron 60.0%
! GGGGGCGCGAGTACAAAAGA+AGG + tig0041402:15035-15054 Msa1461250:intergenic 60.0%
CGAGCAGGAAGAACGGTGGC+CGG + tig0041402:11296-11315 Msa1461250:intergenic 65.0%
!! GGAGGAGATGGTGGACGAGC+AGG + tig0041402:11311-11330 Msa1461250:intergenic 65.0%
GAAGCGCGTGGAGGAGATGG+TGG + tig0041402:11320-11339 Msa1461250:intergenic 65.0%
ACGGGGATTGAAGCGCGTGG+AGG + tig0041402:11329-11348 Msa1461250:intergenic 65.0%
! GTGACGGGGATTGAAGCGCG+TGG + tig0041402:11332-11351 Msa1461250:intergenic 65.0%
AGCAGGTCCGAATCCGGAGG+TGG + tig0041402:11501-11520 Msa1461250:intergenic 65.0%
GGGAGCAGGTCCGAATCCGG+AGG + tig0041402:11504-11523 Msa1461250:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0041402 gene 11015 15151 11015 ID=Msa1461250;Name=Msa1461250
tig0041402 mRNA 11015 15151 11015 ID=Msa1461250-mRNA-1;Parent=Msa1461250;Name=Msa1461250-mRNA-1;_AED=0.00;_eAED=0.00;_QI=197|1|1|1|1|1|3|221|281
tig0041402 exon 11015 11496 11015 ID=Msa1461250-mRNA-1:exon:23093;Parent=Msa1461250-mRNA-1
tig0041402 exon 11852 11926 11852 ID=Msa1461250-mRNA-1:exon:23092;Parent=Msa1461250-mRNA-1
tig0041402 exon 14445 15151 14445 ID=Msa1461250-mRNA-1:exon:23091;Parent=Msa1461250-mRNA-1
tig0041402 five_prime_UTR 14955 15151 14955 ID=Msa1461250-mRNA-1:five_prime_utr;Parent=Msa1461250-mRNA-1
tig0041402 CDS 14445 14954 14445 ID=Msa1461250-mRNA-1:cds;Parent=Msa1461250-mRNA-1
tig0041402 CDS 11852 11926 11852 ID=Msa1461250-mRNA-1:cds;Parent=Msa1461250-mRNA-1
tig0041402 CDS 11236 11496 11236 ID=Msa1461250-mRNA-1:cds;Parent=Msa1461250-mRNA-1
tig0041402 three_prime_UTR 11015 11235 11015 ID=Msa1461250-mRNA-1:three_prime_utr;Parent=Msa1461250-mRNA-1
Gene Sequence

>Msa1461250

ATGTCACACAGCGACACCATACCCCTTCACGCATCATCCCAATCTGACATCGACGAGATCGAAAATCTCATTTACGCTTCTCCGGCCACCGTTCTTCCTGCTCGTCCACCATCTCCTCCACGCGCTTCAATCCCCGTCACTTCTTCCACTTCTTCTCCTTTCATCAATTCCAATCTTCCTAATCCCGCACCCCCCAAATCCTCTTCTCACCCCTCTCTCCCAAAACCCCCTTCTTCTTCTCTCCCTCCTCTTCCTCCTCCTCCTTCTTCTACCCGACCCGATATCTCCACCTCCGGATTCGGACCTGCTCCCAATACCTTGACTGAACCTGTTTGGGATACTGTCAAAAGAGATCTCTCCAGGATTGTTAGTAATTTGAAACTCGTTGTTTTTCCTAACCCTAATCGTGAAGATCCTGGTAAGGCTTTGCGTGATTGGGATCTTTGGGGACCTTTCTTCTTCATTGTTTTCTTAGGTCTCACTCTTTCTTGGTCTGCTTCTGTCAAAAAGTCTGAGGTTTTTGCGGTTGCATTTGCCTTACTTGCTGCTGGTGCTGTAATTTTGACATTGAATGTCCTGCTTCTGGGTGGACACATTATTTTCTTCCAGAGTCTGAGTCTGCTCGGTTATTGCTTATTCCCTCTTGATGTTGGTGCATTAATTTGTATGTTGAAGAACAATGTTATAGTAAAAGTGGTAGTGGTATGTGTGACATTGGCGTGGAGCTCTTGGGCTGCGTATCCTTTCATGAGTTCTGCAGTCAACCCCAGAAGAAAAGCTCTTGCTCTCTACCCTGTTTTTCTCATGTATGTATCTGTTGGTTTTCTCATCATTGCCATTGACTAA

Protein sequence

>Msa1461250

MSHSDTIPLHASSQSDIDEIENLIYASPATVLPARPPSPPRASIPVTSSTSSPFINSNLPNPAPPKSSSHPSLPKPPSSSLPPLPPPPSSTRPDISTSGFGPAPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPNREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDVGALICMLKNNVIVKVVVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSVGFLIIAID*