Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848910 | XP_003615062.1 | 93.695 | 682 | 37 | 2 | 1 | 682 | 1 | 676 | 0.0 | 1283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848910 | sp|Q9MAH1|TTL1_ARATH | 44.280 | 472 | 256 | 4 | 218 | 682 | 228 | 699 | 4.66e-126 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848910 | G7KAB8 | 93.695 | 682 | 37 | 2 | 1 | 682 | 1 | 676 | 0.0 | 1283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072180 | Msa0848910 | 0.808702 | 2.720237e-50 | -8.615850e-47 |
| Msa0657710 | Msa0848910 | 0.861909 | 7.365950e-64 | -8.615850e-47 |
| Msa0657720 | Msa0848910 | 0.824256 | 8.907631e-54 | -8.615850e-47 |
| Msa0682110 | Msa0848910 | 0.814631 | 1.396265e-51 | -8.615850e-47 |
| Msa0682160 | Msa0848910 | 0.823661 | 1.228134e-53 | -8.615850e-47 |
| Msa0702790 | Msa0848910 | 0.821275 | 4.402167e-53 | -8.615850e-47 |
| Msa0702800 | Msa0848910 | 0.865336 | 6.359099e-65 | -8.615850e-47 |
| Msa0712880 | Msa0848910 | 0.807850 | 4.132079e-50 | -8.615850e-47 |
| Msa0722890 | Msa0848910 | 0.806311 | 8.750885e-50 | -8.615850e-47 |
| Msa0723090 | Msa0848910 | 0.829377 | 5.325670e-55 | -8.615850e-47 |
| Msa0731590 | Msa0848910 | 0.890629 | 8.285609e-74 | -8.615850e-47 |
| Msa0731680 | Msa0848910 | 0.824566 | 7.530527e-54 | -8.615850e-47 |
| Msa0771790 | Msa0848910 | 0.897025 | 2.096368e-76 | -8.615850e-47 |
| Msa0809930 | Msa0848910 | 0.824230 | 9.031630e-54 | -8.615850e-47 |
| Msa0828950 | Msa0848910 | 0.818970 | 1.484654e-52 | -8.615850e-47 |
| Msa0828960 | Msa0848910 | 0.862955 | 3.510888e-64 | -8.615850e-47 |
| Msa0134780 | Msa0848910 | 0.805626 | 1.219044e-49 | -8.615850e-47 |
| Msa0401860 | Msa0848910 | -0.800219 | 1.597292e-48 | -8.615850e-47 |
| Msa0405460 | Msa0848910 | -0.810923 | 9.054226e-51 | -8.615850e-47 |
| Msa0405550 | Msa0848910 | -0.802358 | 5.826418e-49 | -8.615850e-47 |
| Msa0417790 | Msa0848910 | -0.802945 | 4.409458e-49 | -8.615850e-47 |
| Msa0269170 | Msa0848910 | -0.816468 | 5.444561e-52 | -8.615850e-47 |
| Msa0345050 | Msa0848910 | 0.818299 | 2.108029e-52 | -8.615850e-47 |
| Msa0483970 | Msa0848910 | -0.811504 | 6.774978e-51 | -8.615850e-47 |
| Msa0531050 | Msa0848910 | 0.802554 | 5.308869e-49 | -8.615850e-47 |
| Msa0567330 | Msa0848910 | 0.804509 | 2.087585e-49 | -8.615850e-47 |
| Msa0591250 | Msa0848910 | -0.800624 | 1.320835e-48 | -8.615850e-47 |
| Msa0848910 | Msa0867660 | -0.820359 | 7.152760e-53 | -8.615850e-47 |
| Msa0848910 | Msa0873910 | 0.811988 | 5.314164e-51 | -8.615850e-47 |
| Msa0848910 | Msa0905570 | 0.803115 | 4.066082e-49 | -8.615850e-47 |
| Msa0848910 | Msa0906660 | 0.806658 | 7.390219e-50 | -8.615850e-47 |
| Msa0848910 | Msa0908260 | -0.805837 | 1.100695e-49 | -8.615850e-47 |
| Msa0848910 | Msa0908270 | -0.808421 | 3.122962e-50 | -8.615850e-47 |
| Msa0848910 | Msa0908280 | -0.801309 | 9.567485e-49 | -8.615850e-47 |
| Msa0848910 | Msa0908350 | -0.806706 | 7.222831e-50 | -8.615850e-47 |
| Msa0848910 | Msa0908470 | -0.812703 | 3.710397e-51 | -8.615850e-47 |
| Msa0848910 | Msa0908510 | -0.808729 | 2.684096e-50 | -8.615850e-47 |
| Msa0848910 | Msa0908630 | -0.805760 | 1.142468e-49 | -8.615850e-47 |
| Msa0848910 | Msa0908690 | -0.804024 | 2.633780e-49 | -8.615850e-47 |
| Msa0848910 | Msa0908700 | -0.810700 | 1.012037e-50 | -8.615850e-47 |
| Msa0848910 | Msa0924900 | -0.815670 | 8.206109e-52 | -8.615850e-47 |
| Msa0848910 | Msa0983600 | -0.810546 | 1.092651e-50 | -8.615850e-47 |
| Msa0848910 | Msa0983610 | -0.819519 | 1.112927e-52 | -8.615850e-47 |
| Msa0848910 | Msa1086760 | -0.805355 | 1.389483e-49 | -8.615850e-47 |
| Msa0848910 | Msa1086770 | -0.814580 | 1.433254e-51 | -8.615850e-47 |
| Msa0848910 | Msa1086940 | -0.817983 | 2.484601e-52 | -8.615850e-47 |
| Msa0848910 | Msa1087070 | -0.815956 | 7.087980e-52 | -8.615850e-47 |
| Msa0848910 | Msa1087080 | -0.806180 | 9.320621e-50 | -8.615850e-47 |
| Msa0848910 | Msa1087090 | -0.815997 | 6.937841e-52 | -8.615850e-47 |
| Msa0848910 | Msa1202800 | 0.845116 | 4.964207e-59 | -8.615850e-47 |
| Msa0848910 | Msa1214310 | 0.807593 | 4.685950e-50 | -8.615850e-47 |
| Msa0848910 | Msa1255210 | 0.844416 | 7.666007e-59 | -8.615850e-47 |
| Msa0848910 | Msa1283930 | 0.808867 | 2.507471e-50 | -8.615850e-47 |
| Msa0848910 | Msa1295650 | 0.843545 | 1.311614e-58 | -8.615850e-47 |
| Msa0848910 | Msa1322960 | 0.804472 | 2.124915e-49 | -8.615850e-47 |
| Msa0848910 | Msa1326680 | 0.801102 | 1.054821e-48 | -8.615850e-47 |
| Msa0848910 | Msa1354360 | -0.818870 | 1.563802e-52 | -8.615850e-47 |
| Msa0848910 | Msa1354370 | -0.802214 | 6.237738e-49 | -8.615850e-47 |
| Msa0848910 | Msa1354400 | -0.814858 | 1.243963e-51 | -8.615850e-47 |
| Msa0848910 | Msa1354520 | -0.818744 | 1.670519e-52 | -8.615850e-47 |
| Msa0848910 | Msa1354530 | -0.814254 | 1.691737e-51 | -8.615850e-47 |
| Msa0848910 | Msa1354650 | -0.815455 | 9.166368e-52 | -8.615850e-47 |
| Msa0848910 | Msa1354660 | -0.818580 | 1.820071e-52 | -8.615850e-47 |
| Msa0848910 | Msa1354780 | -0.810328 | 1.217184e-50 | -8.615850e-47 |
| Msa0848910 | Msa1354790 | -0.816149 | 6.417901e-52 | -8.615850e-47 |
| Msa0848910 | Msa1354960 | -0.820687 | 6.013619e-53 | -8.615850e-47 |
| Msa0848910 | Msa1365990 | -0.812271 | 4.610756e-51 | -8.615850e-47 |
| Msa0848910 | Msa1366020 | -0.816338 | 5.821836e-52 | -8.615850e-47 |
| Msa0848910 | Msa1366030 | -0.814844 | 1.252812e-51 | -8.615850e-47 |
| Msa0848910 | Msa1366060 | -0.815129 | 1.082903e-51 | -8.615850e-47 |
| Msa0848910 | Msa1368260 | -0.809161 | 2.169766e-50 | -8.615850e-47 |
| Msa0848910 | Msa1385360 | -0.815333 | 9.753281e-52 | -8.615850e-47 |
| Msa0848910 | Msa1385390 | -0.815195 | 1.047154e-51 | -8.615850e-47 |
| Msa0848910 | Msa1391130 | -0.812630 | 3.849805e-51 | -8.615850e-47 |
| Msa0848910 | Msa1391140 | -0.817382 | 3.394549e-52 | -8.615850e-47 |
| Msa0848910 | Msa1391260 | -0.820893 | 5.392950e-53 | -8.615850e-47 |
| Msa0848910 | Msa1407810 | 0.801601 | 8.337809e-49 | -8.615850e-47 |
| Msa0848910 | Msa1433360 | 0.826558 | 2.539237e-54 | -8.615850e-47 |
| Msa0848910 | Msa1437780 | 0.804259 | 2.353554e-49 | -8.615850e-47 |
| Msa0848910 | Msa1445530 | 0.812302 | 4.539556e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848910 | MtrunA17_Chr5g0425741 | 93.695 | 682 | 37 | 2 | 1 | 682 | 1 | 676 | 0.0 | 1283 |
| Msa0848910 | MtrunA17_Chr3g0115681 | 67.947 | 677 | 174 | 10 | 14 | 682 | 15 | 656 | 0.0 | 868 |
| Msa0848910 | MtrunA17_Chr2g0316221 | 46.653 | 478 | 243 | 4 | 215 | 681 | 219 | 695 | 2.40e-143 | 434 |
| Msa0848910 | MtrunA17_Chr3g0124261 | 57.983 | 357 | 149 | 1 | 215 | 570 | 220 | 576 | 7.26e-141 | 424 |
| Msa0848910 | MtrunA17_Chr7g0257081 | 26.933 | 375 | 216 | 11 | 224 | 545 | 663 | 1032 | 8.15e-18 | 88.2 |
| Msa0848910 | MtrunA17_Chr4g0038931 | 25.806 | 372 | 218 | 13 | 224 | 540 | 533 | 901 | 1.27e-16 | 84.3 |
| Msa0848910 | MtrunA17_Chr7g0237741 | 37.168 | 113 | 64 | 1 | 453 | 558 | 98 | 210 | 1.24e-14 | 74.7 |
| Msa0848910 | MtrunA17_Chr1g0160051 | 39.326 | 89 | 54 | 0 | 218 | 306 | 182 | 270 | 3.39e-14 | 75.5 |
| Msa0848910 | MtrunA17_Chr2g0323971 | 34.513 | 113 | 67 | 1 | 453 | 558 | 101 | 213 | 3.46e-14 | 73.6 |
| Msa0848910 | MtrunA17_Chr1g0166441 | 27.103 | 107 | 78 | 0 | 452 | 558 | 13 | 119 | 8.43e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0848910 | AT5G65160.1 | 53.887 | 373 | 168 | 2 | 201 | 572 | 223 | 592 | 2.12e-134 | 408 |
| Msa0848910 | AT1G78120.1 | 43.836 | 584 | 263 | 14 | 6 | 583 | 3 | 527 | 3.81e-129 | 392 |
| Msa0848910 | AT1G53300.1 | 44.280 | 472 | 256 | 4 | 218 | 682 | 228 | 699 | 4.74e-127 | 392 |
| Msa0848910 | AT2G42580.1 | 42.339 | 496 | 276 | 5 | 194 | 680 | 195 | 689 | 6.17e-126 | 389 |
| Msa0848910 | AT3G14950.1 | 43.524 | 471 | 259 | 4 | 217 | 680 | 258 | 728 | 6.29e-124 | 385 |
| Msa0848910 | AT5G10090.1 | 52.279 | 373 | 174 | 2 | 201 | 572 | 224 | 593 | 2.30e-122 | 377 |
| Msa0848910 | AT3G58620.1 | 40.161 | 498 | 281 | 7 | 194 | 680 | 189 | 680 | 2.80e-113 | 356 |
| Msa0848910 | AT1G78120.2 | 43.233 | 532 | 237 | 14 | 6 | 531 | 3 | 475 | 2.02e-110 | 342 |
| Msa0848910 | AT3G58620.2 | 39.468 | 451 | 256 | 7 | 194 | 633 | 189 | 633 | 1.06e-96 | 312 |
| Msa0848910 | AT2G41520.1 | 28.346 | 381 | 217 | 12 | 218 | 545 | 554 | 931 | 2.29e-24 | 109 |
| Msa0848910 | AT2G41520.3 | 28.084 | 381 | 218 | 12 | 218 | 545 | 454 | 831 | 4.34e-24 | 108 |
| Msa0848910 | AT5G12430.1 | 27.248 | 367 | 219 | 13 | 224 | 545 | 615 | 978 | 6.99e-21 | 98.6 |
| Msa0848910 | AT2G41520.2 | 27.100 | 369 | 206 | 11 | 218 | 545 | 554 | 900 | 9.92e-20 | 94.7 |
| Msa0848910 | AT4G12400.2 | 22.222 | 306 | 209 | 5 | 218 | 511 | 3 | 291 | 1.13e-14 | 77.8 |
| Msa0848910 | AT4G12400.1 | 22.222 | 306 | 209 | 5 | 218 | 511 | 3 | 291 | 1.34e-14 | 77.4 |
| Msa0848910 | AT1G04190.1 | 30.303 | 132 | 91 | 1 | 447 | 577 | 12 | 143 | 4.93e-14 | 74.3 |
| Msa0848910 | AT1G04190.1 | 32.593 | 135 | 78 | 3 | 220 | 354 | 18 | 139 | 1.83e-11 | 66.6 |
| Msa0848910 | AT4G08320.2 | 37.079 | 89 | 56 | 0 | 218 | 306 | 176 | 264 | 5.98e-12 | 68.9 |
| Msa0848910 | AT4G08320.1 | 37.079 | 89 | 56 | 0 | 218 | 306 | 176 | 264 | 6.28e-12 | 68.6 |
| Msa0848910 | AT3G17970.1 | 38.202 | 89 | 55 | 0 | 218 | 306 | 475 | 563 | 1.35e-11 | 68.2 |
| Msa0848910 | AT4G30480.2 | 34.513 | 113 | 67 | 2 | 453 | 558 | 108 | 220 | 8.00e-11 | 63.9 |
Find 120 sgRNAs with CRISPR-Local
Find 226 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTAAGGATTTAAAATT+TGG | 0.140223 | 5_4:+35040570 | Msa0848910:CDS |
| CACTCAACACTCTTTCTTCT+TGG | 0.181231 | 5_4:-35037912 | None:intergenic |
| TGACATCATCATTCGTATTA+TGG | 0.187837 | 5_4:-35037743 | None:intergenic |
| ATTTCCCACCTTCTTGCTTT+TGG | 0.202810 | 5_4:-35037445 | None:intergenic |
| CACCAATCGACAGAAAATTT+TGG | 0.212464 | 5_4:-35039288 | None:intergenic |
| GATTGGTGTAACAAGATATT+TGG | 0.255261 | 5_4:+35039303 | Msa0848910:CDS |
| CCCATTGATTTCAACACTTC+AGG | 0.263680 | 5_4:-35038080 | None:intergenic |
| GTTTGGCAACGATATATTTC+AGG | 0.271567 | 5_4:+35038300 | Msa0848910:CDS |
| GGGAAATGAAGCATACAAAA+AGG | 0.283295 | 5_4:+35038100 | Msa0848910:CDS |
| TTCCAAAATGCAATGGAAAA+AGG | 0.284276 | 5_4:+35041340 | Msa0848910:three_prime_UTR |
| AAGAAGGTGGGAAATGAATT+TGG | 0.286183 | 5_4:+35037453 | Msa0848910:CDS |
| AATTGCTATTGATTCAAATA+AGG | 0.311942 | 5_4:+35038160 | Msa0848910:CDS |
| TCAAGAGTTAAAGAGATTTC+AGG | 0.320539 | 5_4:+35041210 | Msa0848910:CDS |
| GCTACGTGGTGAAGATATTA+AGG | 0.330275 | 5_4:+35040557 | Msa0848910:CDS |
| CATTTACCTCTCTGTTGCTT+GGG | 0.349847 | 5_4:-35039795 | None:intergenic |
| GCATTTACCTCTCTGTTGCT+TGG | 0.350359 | 5_4:-35039796 | None:intergenic |
| TAATGGAAGAAAAGTGGTTA+TGG | 0.351291 | 5_4:+35037989 | Msa0848910:CDS |
| TAGCTTCCATGCATTTCTTA+AGG | 0.354835 | 5_4:-35038970 | None:intergenic |
| CTTGCCACTTCTTCATCCCC+TGG | 0.357092 | 5_4:-35040501 | None:intergenic |
| TGAATTTGGTTGTGGTTTCA+TGG | 0.358450 | 5_4:+35037467 | Msa0848910:CDS |
| AACAGATGGGAATCTCTTGC+TGG | 0.367982 | 5_4:-35040807 | None:intergenic |
| CTTCAAGGCATCAAAATTCA+TGG | 0.378167 | 5_4:+35039873 | Msa0848910:CDS |
| TTCATTGAATCTAGTGTTGT+TGG | 0.378212 | 5_4:-35037631 | None:intergenic |
| AGTGCTGCTTTGATTGGATT+AGG | 0.390295 | 5_4:+35038203 | Msa0848910:CDS |
| TTTCAAGGGAGAAAAGTCTT+TGG | 0.402556 | 5_4:-35037859 | None:intergenic |
| CAACATTTCATAGTCTTGAA+TGG | 0.407126 | 5_4:-35040466 | None:intergenic |
| AATGGAAGAAAAGTGGTTAT+GGG | 0.407604 | 5_4:+35037990 | Msa0848910:CDS |
| AATAAGAGTGCTGCTTTGAT+TGG | 0.422910 | 5_4:+35038197 | Msa0848910:CDS |
| AAATATTACACTCCCTCAAA+TGG | 0.428817 | 5_4:+35041285 | Msa0848910:three_prime_UTR |
| TAAATATAATGTTCCATTTG+AGG | 0.438359 | 5_4:-35041298 | None:intergenic |
| CAAGTTTCCAGTGAGTTTCA+AGG | 0.440774 | 5_4:-35037874 | None:intergenic |
| TCTAGCTGATGTTACTGCTC+TGG | 0.449258 | 5_4:-35039833 | None:intergenic |
| AGTGCTTACCTGTTGATGAT+AGG | 0.450235 | 5_4:+35039336 | Msa0848910:CDS |
| GTGTTAGTTCAACTCACAAA+AGG | 0.450869 | 5_4:+35037709 | Msa0848910:CDS |
| AAATATAATGTTCCATTTGA+GGG | 0.452274 | 5_4:-35041297 | None:intergenic |
| AGTGGCAAGGGCTTTGTTTG+AGG | 0.452462 | 5_4:+35040515 | Msa0848910:CDS |
| GGGAGAAAAGTCTTTGGTTA+CGG | 0.459219 | 5_4:-35037853 | None:intergenic |
| GTTTCCAAATAAAGAACAAA+AGG | 0.459946 | 5_4:+35037593 | Msa0848910:CDS |
| CAAGGGCTTTGTTTGAGGCT+CGG | 0.466961 | 5_4:+35040520 | Msa0848910:CDS |
| GAGTGGAAACTTACTCTTCA+AGG | 0.469684 | 5_4:+35039858 | Msa0848910:CDS |
| TAACAGAGCTCACAACCGTT+TGG | 0.473092 | 5_4:+35038283 | Msa0848910:CDS |
| TGAATGGAGTGTTGTTCTAA+AGG | 0.474125 | 5_4:+35039003 | Msa0848910:CDS |
| AAGTTTCCAGTGAGTTTCAA+GGG | 0.474677 | 5_4:-35037873 | None:intergenic |
| TGGTTTACTTAGCATCTGGC+AGG | 0.476129 | 5_4:+35039364 | Msa0848910:CDS |
| GCAGCATGTCGTTCTAAGCT+AGG | 0.476776 | 5_4:+35039964 | Msa0848910:CDS |
| GAGTTTAACTCTAAATGCTT+AGG | 0.478109 | 5_4:-35037939 | None:intergenic |
| GCACTGGTTTACTTAGCATC+TGG | 0.479209 | 5_4:+35039360 | Msa0848910:CDS |
| GAGAGGTAAATGCAGTGTTA+AGG | 0.483205 | 5_4:+35039806 | Msa0848910:CDS |
| TTAAGAAATGCATGGAAGCT+AGG | 0.484095 | 5_4:+35038972 | Msa0848910:CDS |
| AGCTCGACATCATCATCCTC+TGG | 0.484914 | 5_4:+35037687 | Msa0848910:CDS |
| ATGAGTGTGAGGAATCTATT+CGG | 0.485702 | 5_4:+35038246 | Msa0848910:CDS |
| CAAGCAAGTGTCGATGGTGC+TGG | 0.487932 | 5_4:+35040778 | Msa0848910:CDS |
| TTTGGCATGTTCTCATACAC+GGG | 0.489758 | 5_4:-35039270 | None:intergenic |
| TTCAGTATACAATGAAGGAT+TGG | 0.491579 | 5_4:+35039903 | Msa0848910:CDS |
| GATTGAAGACCATCCCTACT+TGG | 0.492258 | 5_4:+35041134 | Msa0848910:CDS |
| AGGTGCTGATTCAGCTCCAC+AGG | 0.494004 | 5_4:+35039048 | Msa0848910:CDS |
| AAGCTAGGAAATTCAATGAA+TGG | 0.495095 | 5_4:+35038987 | Msa0848910:CDS |
| ACCTGAAGTGTTGAAATCAA+TGG | 0.500536 | 5_4:+35038079 | Msa0848910:CDS |
| ACACAGTCTGCATTATCCTT+AGG | 0.501027 | 5_4:+35039028 | Msa0848910:CDS |
| TTTGTTTGTTAATAGGTTTG+AGG | 0.501255 | 5_4:+35039735 | Msa0848910:intron |
| CCTGTTGATGATAGGCGCAC+TGG | 0.501335 | 5_4:+35039344 | Msa0848910:CDS |
| AAAACAGCTCAGCAAGCGGC+TGG | 0.502769 | 5_4:+35039766 | Msa0848910:CDS |
| CCAGTGCGCCTATCATCAAC+AGG | 0.502823 | 5_4:-35039344 | None:intergenic |
| CCTGAAGTGTTGAAATCAAT+GGG | 0.509444 | 5_4:+35038080 | Msa0848910:CDS |
| GTGTAACAAGATATTTGGTA+TGG | 0.512670 | 5_4:+35039308 | Msa0848910:CDS |
| AGTCAACGTTTGACGTTGAT+CGG | 0.519012 | 5_4:-35038910 | None:intergenic |
| CTGCTTTGATTGGATTAGGA+AGG | 0.522810 | 5_4:+35038207 | Msa0848910:CDS |
| CATACACGGGATACGCCTCT+TGG | 0.525145 | 5_4:-35039257 | None:intergenic |
| TAATAATAATGGAAGAAAAG+TGG | 0.525995 | 5_4:+35037983 | Msa0848910:CDS |
| GTGGGAAATGAATTTGGTTG+TGG | 0.526985 | 5_4:+35037459 | Msa0848910:CDS |
| TGGTTATGGGGAATATTATG+AGG | 0.527211 | 5_4:+35038003 | Msa0848910:CDS |
| TGGAGCTGAATCAGCACCTA+AGG | 0.532251 | 5_4:-35039044 | None:intergenic |
| CCCATCTGTTAATTTCCTCA+AGG | 0.541662 | 5_4:+35040820 | Msa0848910:CDS |
| TGTTAGTTCAACTCACAAAA+GGG | 0.547111 | 5_4:+35037710 | Msa0848910:CDS |
| GTTCATGTAGTTGGAACGAT+GGG | 0.548608 | 5_4:+35040437 | Msa0848910:intron |
| AGCCTTGCTTTGCTATAACA+TGG | 0.551948 | 5_4:-35040036 | None:intergenic |
| TTGTGAGCTCTGTTATAAGA+AGG | 0.559856 | 5_4:-35038275 | None:intergenic |
| GTAACATCAGCTAGAATGAG+TGG | 0.563164 | 5_4:+35039841 | Msa0848910:CDS |
| CAGCATGTCGTTCTAAGCTA+GGG | 0.566141 | 5_4:+35039965 | Msa0848910:CDS |
| ATAGCAAAGCAAGGCTAAGG+AGG | 0.574323 | 5_4:+35040043 | Msa0848910:CDS |
| CACCACGTAGCATCTTGAGT+TGG | 0.574730 | 5_4:-35040545 | None:intergenic |
| GCATGTTCAGTATACAATGA+AGG | 0.575944 | 5_4:+35039898 | Msa0848910:CDS |
| GTTATAGCAAAGCAAGGCTA+AGG | 0.577740 | 5_4:+35040040 | Msa0848910:CDS |
| TGTTGTGCTCTTCAGTAACA+AGG | 0.578964 | 5_4:+35040748 | Msa0848910:CDS |
| ACCTTGAGGAAATTAACAGA+TGG | 0.580115 | 5_4:-35040821 | None:intergenic |
| GAAAACCAAAAGCAAGAAGG+TGG | 0.581617 | 5_4:+35037440 | Msa0848910:CDS |
| GTGTGAGGAATCTATTCGGT+TGG | 0.582493 | 5_4:+35038250 | Msa0848910:CDS |
| AGACATTACATAACCTCACC+TGG | 0.584948 | 5_4:+35040630 | Msa0848910:CDS |
| ATGGAAGAAAAGTGGTTATG+GGG | 0.585396 | 5_4:+35037991 | Msa0848910:CDS |
| ACTAATGAGTTTCTTAGCCT+AGG | 0.586693 | 5_4:-35037513 | None:intergenic |
| TGAAATATATCGTTGCCAAA+CGG | 0.589094 | 5_4:-35038298 | None:intergenic |
| AATGAAAACCAAAAGCAAGA+AGG | 0.589902 | 5_4:+35037437 | Msa0848910:CDS |
| CCCTACTTGGCAAAATCAGA+AGG | 0.591318 | 5_4:+35041147 | Msa0848910:CDS |
| CCTTGAGGAAATTAACAGAT+GGG | 0.594305 | 5_4:-35040820 | None:intergenic |
| CAGGGGATGAAGAAGTGGCA+AGG | 0.598230 | 5_4:+35040502 | Msa0848910:CDS |
| TGTTCATGTAGTTGGAACGA+TGG | 0.598462 | 5_4:+35040436 | Msa0848910:intron |
| ATCCATGTTATAGCAAAGCA+AGG | 0.601151 | 5_4:+35040034 | Msa0848910:CDS |
| AAGCCTTGCTGAAACTCGTA+AGG | 0.601383 | 5_4:+35039232 | Msa0848910:CDS |
| TGTTGATAAGAGAAAAGCCA+GGG | 0.605338 | 5_4:+35040484 | Msa0848910:CDS |
| AAATCACCTTAAGAAATGCA+TGG | 0.607286 | 5_4:+35038964 | Msa0848910:CDS |
| AGGGGATGAAGAAGTGGCAA+GGG | 0.610194 | 5_4:+35040503 | Msa0848910:CDS |
| AAAGCCAGGGGATGAAGAAG+TGG | 0.612053 | 5_4:+35040497 | Msa0848910:CDS |
| TGTTAAAACAGCTCAGCAAG+CGG | 0.612119 | 5_4:+35039762 | Msa0848910:CDS |
| AACACACAAGCAAGTGTCGA+TGG | 0.612307 | 5_4:+35040772 | Msa0848910:CDS |
| ATGTTGATAAGAGAAAAGCC+AGG | 0.618320 | 5_4:+35040483 | Msa0848910:CDS |
| GCAAGTGTCGATGGTGCTGG+AGG | 0.619498 | 5_4:+35040781 | Msa0848910:CDS |
| GAGGGCATATTGTAATGCCA+AGG | 0.628743 | 5_4:+35040062 | Msa0848910:CDS |
| AAAACCAAAAGCAAGAAGGT+GGG | 0.631711 | 5_4:+35037441 | Msa0848910:CDS |
| ATATTGTGCCTTACCAGGTG+AGG | 0.633902 | 5_4:-35040643 | None:intergenic |
| AGAAGCTATTCATGAGTGTG+AGG | 0.635841 | 5_4:+35038235 | Msa0848910:CDS |
| GTACCTTACGAGTTTCAGCA+AGG | 0.638918 | 5_4:-35039235 | None:intergenic |
| CATAACAGAACTGAGTTGTG+TGG | 0.640314 | 5_4:-35039934 | None:intergenic |
| GTGAGTTGAACTAACACCAG+AGG | 0.640485 | 5_4:-35037703 | None:intergenic |
| ACACTAGATTCAATGAAACT+CGG | 0.644942 | 5_4:+35037637 | Msa0848910:CDS |
| TAGCAAAGCAAGGCTAAGGA+GGG | 0.656318 | 5_4:+35040044 | Msa0848910:CDS |
| CTCCAACTCAAGATGCTACG+TGG | 0.662963 | 5_4:+35040543 | Msa0848910:CDS |
| GTTGTGCTCTTCAGTAACAA+GGG | 0.695733 | 5_4:+35040749 | Msa0848910:CDS |
| GAAACTCGTAAGGTACCAAG+AGG | 0.708107 | 5_4:+35039242 | Msa0848910:CDS |
| AGTTGACCCAAGCAACAGAG+AGG | 0.726458 | 5_4:+35039789 | Msa0848910:CDS |
| GTTGATAAGAGAAAAGCCAG+GGG | 0.744650 | 5_4:+35040485 | Msa0848910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTAAGAGTTTAAT+TGG | + | chr5_4:35040847-35040866 | Msa0848910:intron | 10.0% |
| !!! | TTTTGCAATAGTAATAATAA+TGG | + | chr5_4:35037972-35037991 | Msa0848910:CDS | 15.0% |
| !!! | GATATTAAGGATTTAAAATT+TGG | + | chr5_4:35040570-35040589 | Msa0848910:CDS | 15.0% |
| !!! | TAATAATAATGGAAGAAAAG+TGG | + | chr5_4:35037983-35038002 | Msa0848910:CDS | 20.0% |
| !!! | AATTGCTATTGATTCAAATA+AGG | + | chr5_4:35038160-35038179 | Msa0848910:CDS | 20.0% |
| !!! | TATTTCTATAACAAAAGACA+AGG | + | chr5_4:35038441-35038460 | Msa0848910:intron | 20.0% |
| !! | AATACTATTAAACAGCATAA+AGG | + | chr5_4:35039539-35039558 | Msa0848910:intron | 20.0% |
| !!! | ATTAGGAAAAATACATTTTG+TGG | - | chr5_4:35039566-35039585 | None:intergenic | 20.0% |
| !!! | TCAAACAATTTTACAGAATT+AGG | - | chr5_4:35039583-35039602 | None:intergenic | 20.0% |
| !! | CAAATTCAGTTCAAATATTA+CGG | - | chr5_4:35039633-35039652 | None:intergenic | 20.0% |
| !!! | ATTGAACTTTGTTTGTTAAT+AGG | + | chr5_4:35039728-35039747 | Msa0848910:intron | 20.0% |
| !!! | TATTATTTTGTTCATGTAGT+TGG | + | chr5_4:35040428-35040447 | Msa0848910:intron | 20.0% |
| !!! | TATTTAACAGCATTTGAAAT+CGG | - | chr5_4:35040720-35040739 | None:intergenic | 20.0% |
| !! | CTAATACAACAATGATATAA+TGG | + | chr5_4:35040956-35040975 | Msa0848910:intron | 20.0% |
| !! | GTTATATAAGTAAGAAACAA+TGG | - | chr5_4:35041091-35041110 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTATATTTTGA+AGG | - | chr5_4:35041190-35041209 | None:intergenic | 20.0% |
| !! | AAATATAATGTTCCATTTGA+GGG | - | chr5_4:35041300-35041319 | None:intergenic | 20.0% |
| !! | TAAATATAATGTTCCATTTG+AGG | - | chr5_4:35041301-35041320 | None:intergenic | 20.0% |
| !! | TTTTCAATTTCAAAAGTCCT+AGG | + | chr5_4:35037496-35037515 | Msa0848910:CDS | 25.0% |
| !!! | TCAATGTTGTTAGTTTTCAT+TGG | - | chr5_4:35037549-35037568 | None:intergenic | 25.0% |
| ! | GTTTCCAAATAAAGAACAAA+AGG | + | chr5_4:35037593-35037612 | Msa0848910:CDS | 25.0% |
| !! | TAATTCATTAAGGTTCTGAT+TGG | + | chr5_4:35038355-35038374 | Msa0848910:intron | 25.0% |
| ! | GCTTATAAAACAATTTGACT+CGG | - | chr5_4:35038467-35038486 | None:intergenic | 25.0% |
| !! | GATGTTTTCTTAAGTTAGTT+TGG | + | chr5_4:35038492-35038511 | Msa0848910:intron | 25.0% |
| ! | TATCTACTAGCATAAACATT+TGG | - | chr5_4:35038583-35038602 | None:intergenic | 25.0% |
| ! | AGTACCAAAGATTTAAATTG+AGG | + | chr5_4:35038633-35038652 | Msa0848910:intron | 25.0% |
| ! | ATGACCTCAATTTAAATCTT+TGG | - | chr5_4:35038640-35038659 | None:intergenic | 25.0% |
| ! | ATTTATGTATATTTCGCCAT+TGG | + | chr5_4:35039429-35039448 | Msa0848910:intron | 25.0% |
| !!! | TTTAAGTTTTCTTCTCAACA+AGG | - | chr5_4:35039509-35039528 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTAATAGGTTTG+AGG | + | chr5_4:35039735-35039754 | Msa0848910:intron | 25.0% |
| !! | ATCTAACATTTAAAGTACCT+TGG | - | chr5_4:35040082-35040101 | None:intergenic | 25.0% |
| !!! | GTTTTAGAAAAAAAGGTCAT+CGG | - | chr5_4:35040371-35040390 | None:intergenic | 25.0% |
| !!! | ACGAAGAGTTTTAGAAAAAA+AGG | - | chr5_4:35040378-35040397 | None:intergenic | 25.0% |
| ! | GATTTCAAATGCTGTTAAAT+AGG | + | chr5_4:35040719-35040738 | Msa0848910:intron | 25.0% |
| ! | TTAAAAATAAACCAACCTTG+AGG | - | chr5_4:35040838-35040857 | None:intergenic | 25.0% |
| !! | GTTATTTCAATATCGAAACT+AGG | + | chr5_4:35041065-35041084 | Msa0848910:intron | 25.0% |
| !!! | TTTTGTATATTTTGAAGGCT+GGG | - | chr5_4:35041185-35041204 | None:intergenic | 25.0% |
| !!! | TTTTTGTATATTTTGAAGGC+TGG | - | chr5_4:35041186-35041205 | None:intergenic | 25.0% |
| ! | GCCTTCAAAATATACAAAAA+TGG | + | chr5_4:35041186-35041205 | Msa0848910:CDS | 25.0% |
| AATGAAAACCAAAAGCAAGA+AGG | + | chr5_4:35037437-35037456 | Msa0848910:CDS | 30.0% | |
| !!! | GTTGTTAGTTTTCATTGGTA+GGG | - | chr5_4:35037544-35037563 | None:intergenic | 30.0% |
| !!! | TGTTGTTAGTTTTCATTGGT+AGG | - | chr5_4:35037545-35037564 | None:intergenic | 30.0% |
| ! | GGAACCTTTTGTTCTTTATT+TGG | - | chr5_4:35037600-35037619 | None:intergenic | 30.0% |
| TTCATTGAATCTAGTGTTGT+TGG | - | chr5_4:35037634-35037653 | None:intergenic | 30.0% | |
| ACACTAGATTCAATGAAACT+CGG | + | chr5_4:35037637-35037656 | Msa0848910:CDS | 30.0% | |
| TGTTAGTTCAACTCACAAAA+GGG | + | chr5_4:35037710-35037729 | Msa0848910:CDS | 30.0% | |
| TGACATCATCATTCGTATTA+TGG | - | chr5_4:35037746-35037765 | None:intergenic | 30.0% | |
| GAGTTTAACTCTAAATGCTT+AGG | - | chr5_4:35037942-35037961 | None:intergenic | 30.0% | |
| TAATGGAAGAAAAGTGGTTA+TGG | + | chr5_4:35037989-35038008 | Msa0848910:CDS | 30.0% | |
| AATGGAAGAAAAGTGGTTAT+GGG | + | chr5_4:35037990-35038009 | Msa0848910:CDS | 30.0% | |
| GGAAATGAAGCATACAAAAA+GGG | + | chr5_4:35038101-35038120 | Msa0848910:CDS | 30.0% | |
| !! | CAAAAAGGGTAATTTTGAAG+AGG | + | chr5_4:35038115-35038134 | Msa0848910:CDS | 30.0% |
| TGAAATATATCGTTGCCAAA+CGG | - | chr5_4:35038301-35038320 | None:intergenic | 30.0% | |
| ACACAGTCATAATAATCATG+CGG | + | chr5_4:35038324-35038343 | Msa0848910:intron | 30.0% | |
| GGGCTTCATTTAATTCATTA+AGG | + | chr5_4:35038345-35038364 | Msa0848910:intron | 30.0% | |
| TAAACATTTGGAAGAGCTTA+TGG | - | chr5_4:35038571-35038590 | None:intergenic | 30.0% | |
| TGCAAATTTGAATGCAGATT+AGG | + | chr5_4:35038860-35038879 | Msa0848910:intron | 30.0% | |
| AAATCACCTTAAGAAATGCA+TGG | + | chr5_4:35038964-35038983 | Msa0848910:CDS | 30.0% | |
| AAGCTAGGAAATTCAATGAA+TGG | + | chr5_4:35038987-35039006 | Msa0848910:CDS | 30.0% | |
| ACAACTAAAATTGTTGACCA+AGG | - | chr5_4:35039080-35039099 | None:intergenic | 30.0% | |
| GTTTATTTGACACAAACAAC+TGG | - | chr5_4:35039145-35039164 | None:intergenic | 30.0% | |
| GATTGGTGTAACAAGATATT+TGG | + | chr5_4:35039303-35039322 | Msa0848910:CDS | 30.0% | |
| GTGTAACAAGATATTTGGTA+TGG | + | chr5_4:35039308-35039327 | Msa0848910:CDS | 30.0% | |
| !!! | TACATTTTCTGAGTCTTGTT+TGG | + | chr5_4:35039689-35039708 | Msa0848910:intron | 30.0% |
| TTCAGTATACAATGAAGGAT+TGG | + | chr5_4:35039903-35039922 | Msa0848910:CDS | 30.0% | |
| TGGAGAATCACAATCAAATA+TGG | + | chr5_4:35040271-35040290 | Msa0848910:intron | 30.0% | |
| ! | CAACATTTCATAGTCTTGAA+TGG | - | chr5_4:35040469-35040488 | None:intergenic | 30.0% |
| CAAATGCTGTTAAATAGGTA+TGG | + | chr5_4:35040724-35040743 | Msa0848910:intron | 30.0% | |
| ! | GATAATTGTGCAGATGTTTT+AGG | + | chr5_4:35040931-35040950 | Msa0848910:intron | 30.0% |
| CTTGAGAAACAGATATGATT+TGG | - | chr5_4:35041030-35041049 | None:intergenic | 30.0% | |
| TCAAGAGTTAAAGAGATTTC+AGG | + | chr5_4:35041210-35041229 | Msa0848910:CDS | 30.0% | |
| !! | CCACGAGTTTTTAGAAAAAT+CGG | + | chr5_4:35041239-35041258 | Msa0848910:CDS | 30.0% |
| AAATATTACACTCCCTCAAA+TGG | + | chr5_4:35041285-35041304 | Msa0848910:three_prime_UTR | 30.0% | |
| !! | GTTGATTTTCCAAAATGCAA+TGG | + | chr5_4:35041333-35041352 | Msa0848910:three_prime_UTR | 30.0% |
| TTCCAAAATGCAATGGAAAA+AGG | + | chr5_4:35041340-35041359 | Msa0848910:three_prime_UTR | 30.0% | |
| AAAACCAAAAGCAAGAAGGT+GGG | + | chr5_4:35037441-35037460 | Msa0848910:CDS | 35.0% | |
| AAGAAGGTGGGAAATGAATT+TGG | + | chr5_4:35037453-35037472 | Msa0848910:CDS | 35.0% | |
| TGAATTTGGTTGTGGTTTCA+TGG | + | chr5_4:35037467-35037486 | Msa0848910:CDS | 35.0% | |
| ACTAATGAGTTTCTTAGCCT+AGG | - | chr5_4:35037516-35037535 | None:intergenic | 35.0% | |
| !!! | GTGTTGTTGGAGATTTTTTG+TGG | - | chr5_4:35037621-35037640 | None:intergenic | 35.0% |
| GTGTTAGTTCAACTCACAAA+AGG | + | chr5_4:35037709-35037728 | Msa0848910:CDS | 35.0% | |
| TTTCAAGGGAGAAAAGTCTT+TGG | - | chr5_4:35037862-35037881 | None:intergenic | 35.0% | |
| AAGTTTCCAGTGAGTTTCAA+GGG | - | chr5_4:35037876-35037895 | None:intergenic | 35.0% | |
| ATGGAAGAAAAGTGGTTATG+GGG | + | chr5_4:35037991-35038010 | Msa0848910:CDS | 35.0% | |
| TGGTTATGGGGAATATTATG+AGG | + | chr5_4:35038003-35038022 | Msa0848910:CDS | 35.0% | |
| !! | ACCTGAAGTGTTGAAATCAA+TGG | + | chr5_4:35038079-35038098 | Msa0848910:CDS | 35.0% |
| !! | CCTGAAGTGTTGAAATCAAT+GGG | + | chr5_4:35038080-35038099 | Msa0848910:CDS | 35.0% |
| GGGAAATGAAGCATACAAAA+AGG | + | chr5_4:35038100-35038119 | Msa0848910:CDS | 35.0% | |
| !! | GGTAATTTTGAAGAGGCTTT+GGG | + | chr5_4:35038122-35038141 | Msa0848910:CDS | 35.0% |
| !! | AATAAGAGTGCTGCTTTGAT+TGG | + | chr5_4:35038197-35038216 | Msa0848910:CDS | 35.0% |
| ATGAGTGTGAGGAATCTATT+CGG | + | chr5_4:35038246-35038265 | Msa0848910:CDS | 35.0% | |
| TTGTGAGCTCTGTTATAAGA+AGG | - | chr5_4:35038278-35038297 | None:intergenic | 35.0% | |
| GTTTGGCAACGATATATTTC+AGG | + | chr5_4:35038300-35038319 | Msa0848910:CDS | 35.0% | |
| CACAGTCATAATAATCATGC+GGG | + | chr5_4:35038325-35038344 | Msa0848910:intron | 35.0% | |
| ! | AAGTTAGTTTGGAGAGCTTA+TGG | + | chr5_4:35038503-35038522 | Msa0848910:intron | 35.0% |
| TTTGGAGAGCTTATGGAAAT+AGG | + | chr5_4:35038510-35038529 | Msa0848910:intron | 35.0% | |
| TAGCTTCCATGCATTTCTTA+AGG | - | chr5_4:35038973-35038992 | None:intergenic | 35.0% | |
| TTAAGAAATGCATGGAAGCT+AGG | + | chr5_4:35038972-35038991 | Msa0848910:CDS | 35.0% | |
| !! | TGAATGGAGTGTTGTTCTAA+AGG | + | chr5_4:35039003-35039022 | Msa0848910:CDS | 35.0% |
| ! | TTTTGGCATGTTCTCATACA+CGG | - | chr5_4:35039274-35039293 | None:intergenic | 35.0% |
| ! | TGCCAAAATTTTCTGTCGAT+TGG | + | chr5_4:35039286-35039305 | Msa0848910:CDS | 35.0% |
| ! | CACCAATCGACAGAAAATTT+TGG | - | chr5_4:35039291-35039310 | None:intergenic | 35.0% |
| AATTTGCAGTCCTTTAAGTC+CGG | + | chr5_4:35039469-35039488 | Msa0848910:intron | 35.0% | |
| TCTCAAAAAACCGGACTTAA+AGG | - | chr5_4:35039482-35039501 | None:intergenic | 35.0% | |
| CAAGGTAAGTCTCAAAAAAC+CGG | - | chr5_4:35039491-35039510 | None:intergenic | 35.0% | |
| GAACTGAATTTGCATCACAA+CGG | + | chr5_4:35039641-35039660 | Msa0848910:intron | 35.0% | |
| ! | CTTCAAGGCATCAAAATTCA+TGG | + | chr5_4:35039873-35039892 | Msa0848910:CDS | 35.0% |
| GCATGTTCAGTATACAATGA+AGG | + | chr5_4:35039898-35039917 | Msa0848910:CDS | 35.0% | |
| ATCCATGTTATAGCAAAGCA+AGG | + | chr5_4:35040034-35040053 | Msa0848910:CDS | 35.0% | |
| ACAATCAAATATGGCTGATG+TGG | + | chr5_4:35040280-35040299 | Msa0848910:intron | 35.0% | |
| ACATCAAAACCTTGATGTAG+CGG | + | chr5_4:35040333-35040352 | Msa0848910:intron | 35.0% | |
| ! | ATGTTGATAAGAGAAAAGCC+AGG | + | chr5_4:35040483-35040502 | Msa0848910:CDS | 35.0% |
| ! | TGTTGATAAGAGAAAAGCCA+GGG | + | chr5_4:35040484-35040503 | Msa0848910:CDS | 35.0% |
| AAACTATATTGTGCCTTACC+AGG | - | chr5_4:35040651-35040670 | None:intergenic | 35.0% | |
| CCTTGAGGAAATTAACAGAT+GGG | - | chr5_4:35040823-35040842 | None:intergenic | 35.0% | |
| ACCTTGAGGAAATTAACAGA+TGG | - | chr5_4:35040824-35040843 | None:intergenic | 35.0% | |
| TCTGTTAATTTCCTCAAGGT+TGG | + | chr5_4:35040824-35040843 | Msa0848910:intron | 35.0% | |
| GTTTAATTGGTATGCACAGT+CGG | + | chr5_4:35040860-35040879 | Msa0848910:intron | 35.0% | |
| CTGCACAATTATCTTCTACA+TGG | - | chr5_4:35040924-35040943 | None:intergenic | 35.0% | |
| TAACTGAACTACGACTATTC+AGG | + | chr5_4:35041107-35041126 | Msa0848910:intron | 35.0% | |
| !! | CCGATTTTTCTAAAAACTCG+TGG | - | chr5_4:35041242-35041261 | None:intergenic | 35.0% |
| ! | GACCTTTTTCCATTGCATTT+TGG | - | chr5_4:35041345-35041364 | None:intergenic | 35.0% |
| GAAAACCAAAAGCAAGAAGG+TGG | + | chr5_4:35037440-35037459 | Msa0848910:CDS | 40.0% | |
| ! | ATTTCCCACCTTCTTGCTTT+TGG | - | chr5_4:35037448-35037467 | None:intergenic | 40.0% |
| GTGGGAAATGAATTTGGTTG+TGG | + | chr5_4:35037459-35037478 | Msa0848910:CDS | 40.0% | |
| GGGAGAAAAGTCTTTGGTTA+CGG | - | chr5_4:35037856-35037875 | None:intergenic | 40.0% | |
| ! | TTTTCTCCCTTGAAACTCAC+TGG | + | chr5_4:35037867-35037886 | Msa0848910:CDS | 40.0% |
| CAAGTTTCCAGTGAGTTTCA+AGG | - | chr5_4:35037877-35037896 | None:intergenic | 40.0% | |
| CACTCAACACTCTTTCTTCT+TGG | - | chr5_4:35037915-35037934 | None:intergenic | 40.0% | |
| !! | CCCATTGATTTCAACACTTC+AGG | - | chr5_4:35038083-35038102 | None:intergenic | 40.0% |
| !! | GGGTAATTTTGAAGAGGCTT+TGG | + | chr5_4:35038121-35038140 | Msa0848910:CDS | 40.0% |
| !! | AGTGCTGCTTTGATTGGATT+AGG | + | chr5_4:35038203-35038222 | Msa0848910:CDS | 40.0% |
| ! | CTGCTTTGATTGGATTAGGA+AGG | + | chr5_4:35038207-35038226 | Msa0848910:CDS | 40.0% |
| AGAAGCTATTCATGAGTGTG+AGG | + | chr5_4:35038235-35038254 | Msa0848910:CDS | 40.0% | |
| ! | GTACTTGAGCTTGTTTGGAT+TGG | - | chr5_4:35038618-35038637 | None:intergenic | 40.0% |
| ! | CTTTGGTACTTGAGCTTGTT+TGG | - | chr5_4:35038623-35038642 | None:intergenic | 40.0% |
| ! | AGGAGATGTAGAAAAAGCAC+TGG | + | chr5_4:35038880-35038899 | Msa0848910:CDS | 40.0% |
| AGTCAACGTTTGACGTTGAT+CGG | - | chr5_4:35038913-35038932 | None:intergenic | 40.0% | |
| !! | TGTGCTTTCTTTTCAAGCTC+AGG | + | chr5_4:35038934-35038953 | Msa0848910:CDS | 40.0% |
| ACACAGTCTGCATTATCCTT+AGG | + | chr5_4:35039028-35039047 | Msa0848910:CDS | 40.0% | |
| TTTGGCATGTTCTCATACAC+GGG | - | chr5_4:35039273-35039292 | None:intergenic | 40.0% | |
| !! | AGTGCTTACCTGTTGATGAT+AGG | + | chr5_4:35039336-35039355 | Msa0848910:CDS | 40.0% |
| TGTTAAAACAGCTCAGCAAG+CGG | + | chr5_4:35039762-35039781 | Msa0848910:CDS | 40.0% | |
| ! | CATTTACCTCTCTGTTGCTT+GGG | - | chr5_4:35039798-35039817 | None:intergenic | 40.0% |
| GAGAGGTAAATGCAGTGTTA+AGG | + | chr5_4:35039806-35039825 | Msa0848910:CDS | 40.0% | |
| GTAACATCAGCTAGAATGAG+TGG | + | chr5_4:35039841-35039860 | Msa0848910:CDS | 40.0% | |
| GAGTGGAAACTTACTCTTCA+AGG | + | chr5_4:35039858-35039877 | Msa0848910:CDS | 40.0% | |
| CATAACAGAACTGAGTTGTG+TGG | - | chr5_4:35039937-35039956 | None:intergenic | 40.0% | |
| ! | AGCCTTGCTTTGCTATAACA+TGG | - | chr5_4:35040039-35040058 | None:intergenic | 40.0% |
| GTTATAGCAAAGCAAGGCTA+AGG | + | chr5_4:35040040-35040059 | Msa0848910:CDS | 40.0% | |
| CATGTGTTAGTGTTCAGTGT+AGG | - | chr5_4:35040208-35040227 | None:intergenic | 40.0% | |
| TTGTGATTCTCCACGTTTGA+AGG | - | chr5_4:35040264-35040283 | None:intergenic | 40.0% | |
| TGTTCATGTAGTTGGAACGA+TGG | + | chr5_4:35040436-35040455 | Msa0848910:intron | 40.0% | |
| GTTCATGTAGTTGGAACGAT+GGG | + | chr5_4:35040437-35040456 | Msa0848910:intron | 40.0% | |
| ! | GTTGATAAGAGAAAAGCCAG+GGG | + | chr5_4:35040485-35040504 | Msa0848910:CDS | 40.0% |
| GCTACGTGGTGAAGATATTA+AGG | + | chr5_4:35040557-35040576 | Msa0848910:CDS | 40.0% | |
| AGACATTACATAACCTCACC+TGG | + | chr5_4:35040630-35040649 | Msa0848910:CDS | 40.0% | |
| TTACATAACCTCACCTGGTA+AGG | + | chr5_4:35040635-35040654 | Msa0848910:intron | 40.0% | |
| TGTTGTGCTCTTCAGTAACA+AGG | + | chr5_4:35040748-35040767 | Msa0848910:CDS | 40.0% | |
| GTTGTGCTCTTCAGTAACAA+GGG | + | chr5_4:35040749-35040768 | Msa0848910:CDS | 40.0% | |
| CCCATCTGTTAATTTCCTCA+AGG | + | chr5_4:35040820-35040839 | Msa0848910:CDS | 40.0% | |
| ! | CCTTCTGATTTTGCCAAGTA+GGG | - | chr5_4:35041150-35041169 | None:intergenic | 40.0% |
| ! | ACCTTCTGATTTTGCCAAGT+AGG | - | chr5_4:35041151-35041170 | None:intergenic | 40.0% |
| ! | GTGAGTTGAACTAACACCAG+AGG | - | chr5_4:35037706-35037725 | None:intergenic | 45.0% |
| GTGTGAGGAATCTATTCGGT+TGG | + | chr5_4:35038250-35038269 | Msa0848910:CDS | 45.0% | |
| TAACAGAGCTCACAACCGTT+TGG | + | chr5_4:35038283-35038302 | Msa0848910:CDS | 45.0% | |
| ATGTCTCATAACCGCAAGTG+AGG | - | chr5_4:35038703-35038722 | None:intergenic | 45.0% | |
| AAGCCTTGCTGAAACTCGTA+AGG | + | chr5_4:35039232-35039251 | Msa0848910:CDS | 45.0% | |
| GTACCTTACGAGTTTCAGCA+AGG | - | chr5_4:35039238-35039257 | None:intergenic | 45.0% | |
| ! | GAAACTCGTAAGGTACCAAG+AGG | + | chr5_4:35039242-35039261 | Msa0848910:CDS | 45.0% |
| !! | GCACTGGTTTACTTAGCATC+TGG | + | chr5_4:35039360-35039379 | Msa0848910:CDS | 45.0% |
| TGGTTTACTTAGCATCTGGC+AGG | + | chr5_4:35039364-35039383 | Msa0848910:CDS | 45.0% | |
| TTACTTAGCATCTGGCAGGT+TGG | + | chr5_4:35039368-35039387 | Msa0848910:intron | 45.0% | |
| TTCGCCATTGGCATGCAATA+TGG | + | chr5_4:35039441-35039460 | Msa0848910:intron | 45.0% | |
| ACCACCATATTGCATGCCAA+TGG | - | chr5_4:35039448-35039467 | None:intergenic | 45.0% | |
| GTAGACCACATCATGTGATG+TGG | + | chr5_4:35039607-35039626 | Msa0848910:intron | 45.0% | |
| GCATTTACCTCTCTGTTGCT+TGG | - | chr5_4:35039799-35039818 | None:intergenic | 45.0% | |
| TCTAGCTGATGTTACTGCTC+TGG | - | chr5_4:35039836-35039855 | None:intergenic | 45.0% | |
| ! | CAGCATGTCGTTCTAAGCTA+GGG | + | chr5_4:35039965-35039984 | Msa0848910:CDS | 45.0% |
| ATAGCAAAGCAAGGCTAAGG+AGG | + | chr5_4:35040043-35040062 | Msa0848910:CDS | 45.0% | |
| TAGCAAAGCAAGGCTAAGGA+GGG | + | chr5_4:35040044-35040063 | Msa0848910:CDS | 45.0% | |
| ! | GAGGGCATATTGTAATGCCA+AGG | + | chr5_4:35040062-35040081 | Msa0848910:CDS | 45.0% |
| CAATCTGAACCGCTACATCA+AGG | - | chr5_4:35040345-35040364 | None:intergenic | 45.0% | |
| ATATTGTGCCTTACCAGGTG+AGG | - | chr5_4:35040646-35040665 | None:intergenic | 45.0% | |
| !! | AACACACAAGCAAGTGTCGA+TGG | + | chr5_4:35040772-35040791 | Msa0848910:CDS | 45.0% |
| AACAGATGGGAATCTCTTGC+TGG | - | chr5_4:35040810-35040829 | None:intergenic | 45.0% | |
| GATTGAAGACCATCCCTACT+TGG | + | chr5_4:35041134-35041153 | Msa0848910:CDS | 45.0% | |
| ! | CTGATTTTGCCAAGTAGGGA+TGG | - | chr5_4:35041146-35041165 | None:intergenic | 45.0% |
| CCCTACTTGGCAAAATCAGA+AGG | + | chr5_4:35041147-35041166 | Msa0848910:CDS | 45.0% | |
| !!! | CATTTTTTAAAATATATTAA+AGG | + | chr5_4:35038757-35038776 | Msa0848910:intron | 5.0% |
| AGCTCGACATCATCATCCTC+TGG | + | chr5_4:35037687-35037706 | Msa0848910:CDS | 50.0% | |
| TGGAGCTGAATCAGCACCTA+AGG | - | chr5_4:35039047-35039066 | None:intergenic | 50.0% | |
| TTGACCAAGGAACCAACCTG+TGG | - | chr5_4:35039067-35039086 | None:intergenic | 50.0% | |
| GCCATTGGCATGCAATATGG+TGG | + | chr5_4:35039444-35039463 | Msa0848910:intron | 50.0% | |
| TACGGCCACATCACATGATG+TGG | - | chr5_4:35039615-35039634 | None:intergenic | 50.0% | |
| AGTTGACCCAAGCAACAGAG+AGG | + | chr5_4:35039789-35039808 | Msa0848910:CDS | 50.0% | |
| ! | GCAGCATGTCGTTCTAAGCT+AGG | + | chr5_4:35039964-35039983 | Msa0848910:CDS | 50.0% |
| TGACACAACACTGGCACATG+TGG | - | chr5_4:35040181-35040200 | None:intergenic | 50.0% | |
| GTAGGACACTGACACAACAC+TGG | - | chr5_4:35040190-35040209 | None:intergenic | 50.0% | |
| ACCAAACACGCCTTCAAACG+TGG | + | chr5_4:35040251-35040270 | Msa0848910:intron | 50.0% | |
| ! | TCCACGTTTGAAGGCGTGTT+TGG | - | chr5_4:35040255-35040274 | None:intergenic | 50.0% |
| GTCCCAACGCAGTCACATTA+CGG | + | chr5_4:35040302-35040321 | Msa0848910:intron | 50.0% | |
| GACCGTAATGTGACTGCGTT+GGG | - | chr5_4:35040307-35040326 | None:intergenic | 50.0% | |
| TGACCGTAATGTGACTGCGT+TGG | - | chr5_4:35040308-35040327 | None:intergenic | 50.0% | |
| AAAGCCAGGGGATGAAGAAG+TGG | + | chr5_4:35040497-35040516 | Msa0848910:CDS | 50.0% | |
| AGGGGATGAAGAAGTGGCAA+GGG | + | chr5_4:35040503-35040522 | Msa0848910:CDS | 50.0% | |
| !! | AGTGGCAAGGGCTTTGTTTG+AGG | + | chr5_4:35040515-35040534 | Msa0848910:CDS | 50.0% |
| !! | CAAGGGCTTTGTTTGAGGCT+CGG | + | chr5_4:35040520-35040539 | Msa0848910:CDS | 50.0% |
| CTCCAACTCAAGATGCTACG+TGG | + | chr5_4:35040543-35040562 | Msa0848910:CDS | 50.0% | |
| CACCACGTAGCATCTTGAGT+TGG | - | chr5_4:35040548-35040567 | None:intergenic | 50.0% | |
| GACGCACGTGTGAATCGTTT+CGG | + | chr5_4:35040992-35041011 | Msa0848910:intron | 50.0% | |
| GCACATCTGAGCGCGAATTG+AGG | - | chr5_4:35038671-35038690 | None:intergenic | 55.0% | |
| ACCGCAAGTGAGGTCGCATT+GGG | - | chr5_4:35038693-35038712 | None:intergenic | 55.0% | |
| AACCGCAAGTGAGGTCGCAT+TGG | - | chr5_4:35038694-35038713 | None:intergenic | 55.0% | |
| !! | AGGTGCTGATTCAGCTCCAC+AGG | + | chr5_4:35039048-35039067 | Msa0848910:CDS | 55.0% |
| ! | GCTGATTCAGCTCCACAGGT+TGG | + | chr5_4:35039052-35039071 | Msa0848910:intron | 55.0% |
| !! | AGCTCCACAGGTTGGTTCCT+TGG | + | chr5_4:35039060-35039079 | Msa0848910:intron | 55.0% |
| CATACACGGGATACGCCTCT+TGG | - | chr5_4:35039260-35039279 | None:intergenic | 55.0% | |
| CCAGTGCGCCTATCATCAAC+AGG | - | chr5_4:35039347-35039366 | None:intergenic | 55.0% | |
| !! | CCTGTTGATGATAGGCGCAC+TGG | + | chr5_4:35039344-35039363 | Msa0848910:CDS | 55.0% |
| AAAACAGCTCAGCAAGCGGC+TGG | + | chr5_4:35039766-35039785 | Msa0848910:CDS | 55.0% | |
| ! | CTTGCCACTTCTTCATCCCC+TGG | - | chr5_4:35040504-35040523 | None:intergenic | 55.0% |
| CAGGGGATGAAGAAGTGGCA+AGG | + | chr5_4:35040502-35040521 | Msa0848910:CDS | 55.0% | |
| !! | CAAGCAAGTGTCGATGGTGC+TGG | + | chr5_4:35040778-35040797 | Msa0848910:CDS | 55.0% |
| GCCCAATGCGACCTCACTTG+CGG | + | chr5_4:35038689-35038708 | Msa0848910:intron | 60.0% | |
| !! | GCAAGTGTCGATGGTGCTGG+AGG | + | chr5_4:35040781-35040800 | Msa0848910:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35037432 | 35041376 | 35037432 | ID=Msa0848910;Name=Msa0848910 |
| chr5_4 | mRNA | 35037432 | 35041376 | 35037432 | ID=Msa0848910-mRNA-1;Parent=Msa0848910;Name=Msa0848910-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0.85|1|1|1|7|95|682 |
| chr5_4 | exon | 35037432 | 35038321 | 35037432 | ID=Msa0848910-mRNA-1:exon:11764;Parent=Msa0848910-mRNA-1 |
| chr5_4 | exon | 35038877 | 35039069 | 35038877 | ID=Msa0848910-mRNA-1:exon:11765;Parent=Msa0848910-mRNA-1 |
| chr5_4 | exon | 35039213 | 35039385 | 35039213 | ID=Msa0848910-mRNA-1:exon:11766;Parent=Msa0848910-mRNA-1 |
| chr5_4 | exon | 35039750 | 35040083 | 35039750 | ID=Msa0848910-mRNA-1:exon:11767;Parent=Msa0848910-mRNA-1 |
| chr5_4 | exon | 35040447 | 35040651 | 35040447 | ID=Msa0848910-mRNA-1:exon:11768;Parent=Msa0848910-mRNA-1 |
| chr5_4 | exon | 35040741 | 35040841 | 35040741 | ID=Msa0848910-mRNA-1:exon:11769;Parent=Msa0848910-mRNA-1 |
| chr5_4 | exon | 35041129 | 35041376 | 35041129 | ID=Msa0848910-mRNA-1:exon:11770;Parent=Msa0848910-mRNA-1 |
| chr5_4 | CDS | 35037432 | 35038321 | 35037432 | ID=Msa0848910-mRNA-1:cds;Parent=Msa0848910-mRNA-1 |
| chr5_4 | CDS | 35038877 | 35039069 | 35038877 | ID=Msa0848910-mRNA-1:cds;Parent=Msa0848910-mRNA-1 |
| chr5_4 | CDS | 35039213 | 35039385 | 35039213 | ID=Msa0848910-mRNA-1:cds;Parent=Msa0848910-mRNA-1 |
| chr5_4 | CDS | 35039750 | 35040083 | 35039750 | ID=Msa0848910-mRNA-1:cds;Parent=Msa0848910-mRNA-1 |
| chr5_4 | CDS | 35040447 | 35040651 | 35040447 | ID=Msa0848910-mRNA-1:cds;Parent=Msa0848910-mRNA-1 |
| chr5_4 | CDS | 35040741 | 35040841 | 35040741 | ID=Msa0848910-mRNA-1:cds;Parent=Msa0848910-mRNA-1 |
| chr5_4 | CDS | 35041129 | 35041281 | 35041129 | ID=Msa0848910-mRNA-1:cds;Parent=Msa0848910-mRNA-1 |
| chr5_4 | three_prime_UTR | 35041282 | 35041376 | 35041282 | ID=Msa0848910-mRNA-1:three_prime_utr;Parent=Msa0848910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
