Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771790 | sp|Q9SIN1|TTL3_ARATH | 34.205 | 497 | 231 | 9 | 183 | 585 | 195 | 689 | 8.85e-74 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771790 | G7KAB8 | 79.472 | 682 | 39 | 8 | 1 | 587 | 1 | 676 | 0.0 | 1016 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0072180 | Msa0771790 | 0.818269 | 2.140668e-52 | -8.615850e-47 |
| Msa0657710 | Msa0771790 | 0.857984 | 1.124138e-62 | -8.615850e-47 |
| Msa0657720 | Msa0771790 | 0.821358 | 4.211817e-53 | -8.615850e-47 |
| Msa0682110 | Msa0771790 | 0.825553 | 4.401364e-54 | -8.615850e-47 |
| Msa0682160 | Msa0771790 | 0.834736 | 2.523070e-56 | -8.615850e-47 |
| Msa0702790 | Msa0771790 | 0.820744 | 5.832957e-53 | -8.615850e-47 |
| Msa0702800 | Msa0771790 | 0.855660 | 5.435541e-62 | -8.615850e-47 |
| Msa0709140 | Msa0771790 | 0.801134 | 1.039295e-48 | -8.615850e-47 |
| Msa0712880 | Msa0771790 | 0.816150 | 6.414938e-52 | -8.615850e-47 |
| Msa0722890 | Msa0771790 | 0.828643 | 8.020198e-55 | -8.615850e-47 |
| Msa0723090 | Msa0771790 | 0.846044 | 2.781297e-59 | -8.615850e-47 |
| Msa0731590 | Msa0771790 | 0.885118 | 1.070581e-71 | -8.615850e-47 |
| Msa0731680 | Msa0771790 | 0.831765 | 1.386423e-55 | -8.615850e-47 |
| Msa0736920 | Msa0771790 | 0.801242 | 9.876512e-49 | -8.615850e-47 |
| Msa0765060 | Msa0771790 | 0.821089 | 4.858871e-53 | -8.615850e-47 |
| Msa0771790 | Msa0778570 | 0.805706 | 1.172722e-49 | -8.615850e-47 |
| Msa0771790 | Msa0809930 | 0.852179 | 5.472082e-61 | -8.615850e-47 |
| Msa0771790 | Msa0828950 | 0.823597 | 1.271763e-53 | -8.615850e-47 |
| Msa0771790 | Msa0828960 | 0.863275 | 2.796198e-64 | -8.615850e-47 |
| Msa0771790 | Msa0848910 | 0.897025 | 2.096368e-76 | -8.615850e-47 |
| Msa0771790 | Msa0867660 | -0.830973 | 2.171885e-55 | -8.615850e-47 |
| Msa0771790 | Msa0873910 | 0.812525 | 4.057588e-51 | -8.615850e-47 |
| Msa0771790 | Msa0906660 | 0.805016 | 1.636120e-49 | -8.615850e-47 |
| Msa0771790 | Msa0908260 | -0.817296 | 3.548904e-52 | -8.615850e-47 |
| Msa0771790 | Msa0908270 | -0.817277 | 3.585069e-52 | -8.615850e-47 |
| Msa0771790 | Msa0908280 | -0.804096 | 2.544659e-49 | -8.615850e-47 |
| Msa0771790 | Msa0908350 | -0.806592 | 7.633736e-50 | -8.615850e-47 |
| Msa0771790 | Msa0908470 | -0.822661 | 2.102395e-53 | -8.615850e-47 |
| Msa0771790 | Msa0908500 | -0.807219 | 5.624107e-50 | -8.615850e-47 |
| Msa0771790 | Msa0908510 | -0.815061 | 1.121178e-51 | -8.615850e-47 |
| Msa0771790 | Msa0908630 | -0.816917 | 4.318840e-52 | -8.615850e-47 |
| Msa0771790 | Msa0908690 | -0.816284 | 5.985448e-52 | -8.615850e-47 |
| Msa0771790 | Msa0908700 | -0.817039 | 4.053807e-52 | -8.615850e-47 |
| Msa0771790 | Msa0924900 | -0.819653 | 1.037087e-52 | -8.615850e-47 |
| Msa0771790 | Msa0940910 | 0.809176 | 2.153281e-50 | -8.615850e-47 |
| Msa0771790 | Msa0983600 | -0.821115 | 4.793333e-53 | -8.615850e-47 |
| Msa0771790 | Msa0983610 | -0.827350 | 1.642335e-54 | -8.615850e-47 |
| Msa0771790 | Msa1086760 | -0.816948 | 4.248939e-52 | -8.615850e-47 |
| Msa0771790 | Msa1086770 | -0.817578 | 3.065794e-52 | -8.615850e-47 |
| Msa0771790 | Msa1086940 | -0.821424 | 4.067248e-53 | -8.615850e-47 |
| Msa0771790 | Msa1087070 | -0.822733 | 2.022188e-53 | -8.615850e-47 |
| Msa0771790 | Msa1087080 | -0.808371 | 3.201144e-50 | -8.615850e-47 |
| Msa0771790 | Msa1087090 | -0.820420 | 6.925100e-53 | -8.615850e-47 |
| Msa0771790 | Msa1092310 | 0.801917 | 7.179995e-49 | -8.615850e-47 |
| Msa0771790 | Msa1136760 | 0.810060 | 1.390436e-50 | -8.615850e-47 |
| Msa0771790 | Msa1143260 | 0.800193 | 1.616476e-48 | -8.615850e-47 |
| Msa0771790 | Msa1202800 | 0.854575 | 1.123584e-61 | -8.615850e-47 |
| Msa0771790 | Msa1203440 | 0.803970 | 2.703493e-49 | -8.615850e-47 |
| Msa0771790 | Msa1214310 | 0.824528 | 7.689187e-54 | -8.615850e-47 |
| Msa0771790 | Msa1215740 | 0.806851 | 6.730812e-50 | -8.615850e-47 |
| Msa0771790 | Msa1255210 | 0.844314 | 8.161876e-59 | -8.615850e-47 |
| Msa0771790 | Msa1255690 | 0.803989 | 2.678962e-49 | -8.615850e-47 |
| Msa0771790 | Msa1295650 | 0.841173 | 5.578842e-58 | -8.615850e-47 |
| Msa0771790 | Msa1307530 | 0.800987 | 1.113815e-48 | -8.615850e-47 |
| Msa0771790 | Msa1323070 | 0.804710 | 1.895808e-49 | -8.615850e-47 |
| Msa0771790 | Msa1343600 | 0.804807 | 1.809292e-49 | -8.615850e-47 |
| Msa0771790 | Msa1354360 | -0.827359 | 1.633774e-54 | -8.615850e-47 |
| Msa0771790 | Msa1354370 | -0.807234 | 5.584414e-50 | -8.615850e-47 |
| Msa0771790 | Msa1354400 | -0.820933 | 5.278396e-53 | -8.615850e-47 |
| Msa0771790 | Msa1354520 | -0.823966 | 1.042082e-53 | -8.615850e-47 |
| Msa0771790 | Msa1354530 | -0.820826 | 5.585296e-53 | -8.615850e-47 |
| Msa0771790 | Msa1354650 | -0.820665 | 6.084073e-53 | -8.615850e-47 |
| Msa0771790 | Msa1354660 | -0.824264 | 8.867396e-54 | -8.615850e-47 |
| Msa0771790 | Msa1354780 | -0.819651 | 1.038465e-52 | -8.615850e-47 |
| Msa0771790 | Msa1354790 | -0.821844 | 3.252860e-53 | -8.615850e-47 |
| Msa0771790 | Msa1354960 | -0.826245 | 3.016224e-54 | -8.615850e-47 |
| Msa0771790 | Msa1365990 | -0.821012 | 5.062179e-53 | -8.615850e-47 |
| Msa0771790 | Msa1366020 | -0.822684 | 2.076252e-53 | -8.615850e-47 |
| Msa0771790 | Msa1366030 | -0.821581 | 3.742337e-53 | -8.615850e-47 |
| Msa0771790 | Msa1366060 | -0.821936 | 3.096900e-53 | -8.615850e-47 |
| Msa0771790 | Msa1368260 | -0.813613 | 2.342723e-51 | -8.615850e-47 |
| Msa0771790 | Msa1385360 | -0.824625 | 7.291885e-54 | -8.615850e-47 |
| Msa0771790 | Msa1385390 | -0.822249 | 2.621140e-53 | -8.615850e-47 |
| Msa0771790 | Msa1391130 | -0.818743 | 1.671891e-52 | -8.615850e-47 |
| Msa0771790 | Msa1391140 | -0.823901 | 1.078952e-53 | -8.615850e-47 |
| Msa0771790 | Msa1391260 | -0.824453 | 8.005923e-54 | -8.615850e-47 |
| Msa0771790 | Msa1398140 | 0.802023 | 6.830932e-49 | -8.615850e-47 |
| Msa0771790 | Msa1407810 | 0.806581 | 7.673653e-50 | -8.615850e-47 |
| Msa0771790 | Msa1433360 | 0.830816 | 2.372484e-55 | -8.615850e-47 |
| Msa0771790 | Msa1437780 | 0.808452 | 3.076576e-50 | -8.615850e-47 |
| Msa0771790 | Msa1439250 | 0.800378 | 1.482572e-48 | -8.615850e-47 |
| Msa0771790 | Msa1455200 | 0.800084 | 1.701354e-48 | -8.615850e-47 |
| Msa0139680 | Msa0771790 | 0.804339 | 2.264902e-49 | -8.615850e-47 |
| Msa0187540 | Msa0771790 | 0.800151 | 1.648800e-48 | -8.615850e-47 |
| Msa0226310 | Msa0771790 | 0.815502 | 8.948189e-52 | -8.615850e-47 |
| Msa0401860 | Msa0771790 | -0.802418 | 5.662445e-49 | -8.615850e-47 |
| Msa0405460 | Msa0771790 | -0.816561 | 5.190514e-52 | -8.615850e-47 |
| Msa0405470 | Msa0771790 | -0.804100 | 2.540815e-49 | -8.615850e-47 |
| Msa0405550 | Msa0771790 | -0.814211 | 1.729023e-51 | -8.615850e-47 |
| Msa0415640 | Msa0771790 | 0.806422 | 8.289100e-50 | -8.615850e-47 |
| Msa0254260 | Msa0771790 | 0.805814 | 1.113056e-49 | -8.615850e-47 |
| Msa0269170 | Msa0771790 | -0.824417 | 8.163508e-54 | -8.615850e-47 |
| Msa0304570 | Msa0771790 | 0.825177 | 5.403212e-54 | -8.615850e-47 |
| Msa0304680 | Msa0771790 | 0.830449 | 2.918724e-55 | -8.615850e-47 |
| Msa0345050 | Msa0771790 | 0.821635 | 3.635767e-53 | -8.615850e-47 |
| Msa0483970 | Msa0771790 | -0.825025 | 5.869432e-54 | -8.615850e-47 |
| Msa0567330 | Msa0771790 | 0.808904 | 2.463165e-50 | -8.615850e-47 |
| Msa0591250 | Msa0771790 | -0.810437 | 1.153298e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771790 | MtrunA17_Chr5g0425741 | 79.472 | 682 | 39 | 8 | 1 | 587 | 1 | 676 | 0.0 | 1016 |
| Msa0771790 | MtrunA17_Chr3g0115681 | 56.977 | 688 | 163 | 16 | 1 | 587 | 1 | 656 | 0.0 | 665 |
| Msa0771790 | MtrunA17_Chr3g0124261 | 45.378 | 357 | 126 | 4 | 204 | 491 | 220 | 576 | 4.94e-89 | 286 |
| Msa0771790 | MtrunA17_Chr2g0316221 | 35.774 | 478 | 211 | 8 | 204 | 586 | 219 | 695 | 1.95e-83 | 275 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0771790 | AT1G78120.1 | 35.951 | 573 | 247 | 13 | 4 | 504 | 3 | 527 | 5.96e-82 | 267 |
| Msa0771790 | AT5G65160.1 | 41.823 | 373 | 145 | 5 | 190 | 493 | 223 | 592 | 3.44e-80 | 264 |
| Msa0771790 | AT1G78120.2 | 38.415 | 492 | 229 | 12 | 4 | 469 | 3 | 446 | 1.21e-79 | 259 |
| Msa0771790 | AT2G42580.1 | 34.205 | 497 | 231 | 9 | 183 | 585 | 195 | 689 | 9.00e-75 | 252 |
| Msa0771790 | AT1G53300.1 | 35.381 | 472 | 212 | 9 | 207 | 586 | 228 | 698 | 2.26e-73 | 248 |
| Msa0771790 | AT5G10090.1 | 41.019 | 373 | 148 | 5 | 190 | 493 | 224 | 593 | 5.76e-72 | 242 |
| Msa0771790 | AT3G14950.1 | 34.183 | 471 | 219 | 8 | 206 | 585 | 258 | 728 | 6.40e-70 | 239 |
| Msa0771790 | AT3G58620.1 | 30.785 | 497 | 245 | 10 | 183 | 585 | 189 | 680 | 1.13e-60 | 214 |
| Msa0771790 | AT3G58620.2 | 31.429 | 420 | 207 | 9 | 183 | 526 | 189 | 603 | 2.05e-49 | 182 |
Find 99 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTAAGGATTTAAAATT+TGG | 0.140223 | 5_2:+45178328 | Msa0771790:CDS |
| GTGCTAGTTCAACTCTTAAA+AGG | 0.174363 | 5_2:+45175391 | Msa0771790:CDS |
| CACCATTCAACTGAAAATTT+TGG | 0.177262 | 5_2:-45176956 | None:intergenic |
| TGCCATCATTATCCGTATTA+TGG | 0.222184 | 5_2:-45175425 | None:intergenic |
| ATTTCCCACCTTGTTGCTTT+TGG | 0.222662 | 5_2:-45175127 | None:intergenic |
| AACAAGGTGGGAAATGAATT+TGG | 0.258675 | 5_2:+45175135 | Msa0771790:CDS |
| CCCATTGATTTCAACACTTC+AGG | 0.263680 | 5_2:-45175762 | None:intergenic |
| GGGAAATGAAGCATACAAAA+AGG | 0.283295 | 5_2:+45175782 | Msa0771790:CDS |
| TTCCAAAATGCAATGGAAAA+AGG | 0.284276 | 5_2:+45179097 | Msa0771790:three_prime_UTR |
| GAATGGTGTAACAAGATATT+TGG | 0.286099 | 5_2:+45176971 | Msa0771790:CDS |
| AATTGCTATTGATTCAAATA+AGG | 0.311942 | 5_2:+45175842 | Msa0771790:CDS |
| TCAAGAGTTAAAGAGATTTC+AGG | 0.320539 | 5_2:+45178967 | Msa0771790:CDS |
| GCTACGTGGTGAAGATATTA+AGG | 0.330275 | 5_2:+45178315 | Msa0771790:CDS |
| TAATGGAAGAAAAGTGGTTA+TGG | 0.351291 | 5_2:+45175671 | Msa0771790:CDS |
| CTTGCCACTTCTTCATCCCC+TGG | 0.357092 | 5_2:-45178259 | None:intergenic |
| TGAATTTGGTTGTGGTTTCA+TGG | 0.358450 | 5_2:+45175149 | Msa0771790:CDS |
| CTTCAAGGCATCAAAATTCA+TGG | 0.378167 | 5_2:+45177542 | Msa0771790:CDS |
| TTCATTGAATCTAGTGTTGT+TGG | 0.378212 | 5_2:-45175313 | None:intergenic |
| TAGCTTCTACGCATTTCTTA+AGG | 0.386576 | 5_2:-45176651 | None:intergenic |
| AGTCAACATTTGAGGTTGAT+TGG | 0.387440 | 5_2:-45176591 | None:intergenic |
| AGTGCTGCTTTGATTGGATT+AGG | 0.390295 | 5_2:+45175885 | Msa0771790:CDS |
| TGAATGGAGTGTTGTACTTA+AGG | 0.397110 | 5_2:+45176684 | Msa0771790:CDS |
| GCATTTACCTCTCTGTTGCT+TGG | 0.397607 | 5_2:-45177465 | None:intergenic |
| TTTCAAGGGAGAAAAGTCTT+TGG | 0.402556 | 5_2:-45175541 | None:intergenic |
| AATGGAAGAAAAGTGGTTAT+GGG | 0.407604 | 5_2:+45175672 | Msa0771790:CDS |
| AATAAGAGTGCTGCTTTGAT+TGG | 0.422910 | 5_2:+45175879 | Msa0771790:CDS |
| AAATATTACACTCCCTCAAA+TGG | 0.428817 | 5_2:+45179042 | Msa0771790:three_prime_UTR |
| TAAATATAATGTTCCATTTG+AGG | 0.438359 | 5_2:-45179055 | None:intergenic |
| CAAGTTTCCAGTGAGTTTCA+AGG | 0.440774 | 5_2:-45175556 | None:intergenic |
| AGTGCTTACCTGTTGATGAT+AGG | 0.450235 | 5_2:+45177004 | Msa0771790:CDS |
| TTGAGTGTGAGGAATCTATT+CGG | 0.452182 | 5_2:+45175928 | Msa0771790:CDS |
| AAATATAATGTTCCATTTGA+GGG | 0.452274 | 5_2:-45179054 | None:intergenic |
| AGTGGCAAGGGCTTTGTTTG+AGG | 0.452462 | 5_2:+45178273 | Msa0771790:CDS |
| CAGATTAGGAGAAGTAGAAA+AGG | 0.454259 | 5_2:+45176555 | Msa0771790:intron |
| ACTAACCTGCAGAGCTGAAT+CGG | 0.456052 | 5_2:-45176734 | None:intergenic |
| GGGAGAAAAGTCTTTGGTTA+CGG | 0.459219 | 5_2:-45175535 | None:intergenic |
| GTTTCCAAATAAAGAACAAA+AGG | 0.459946 | 5_2:+45175275 | Msa0771790:CDS |
| CAAGGGCTTTGTTTGAGGCT+CGG | 0.466961 | 5_2:+45178278 | Msa0771790:CDS |
| GAGTGGAAACTTACTCTTCA+AGG | 0.469684 | 5_2:+45177527 | Msa0771790:CDS |
| TCTCGCTGATGTTACTGCTC+TGG | 0.469747 | 5_2:-45177502 | None:intergenic |
| AAGTACAGAGTCAACATTTG+AGG | 0.470779 | 5_2:-45176599 | None:intergenic |
| AAGTTTCCAGTGAGTTTCAA+GGG | 0.474677 | 5_2:-45175555 | None:intergenic |
| GAGTTTAACTCTAAATGCTT+AGG | 0.478109 | 5_2:-45175621 | None:intergenic |
| AAGCTAGGAAATTCAATGAA+TGG | 0.479083 | 5_2:+45176668 | Msa0771790:CDS |
| GAGAGGTAAATGCAGTGTTA+AGG | 0.483205 | 5_2:+45177475 | Msa0771790:CDS |
| TGCTAGTTCAACTCTTAAAA+GGG | 0.485533 | 5_2:+45175392 | Msa0771790:CDS |
| AACACACAAGCAAGTGTTGA+TGG | 0.487801 | 5_2:+45178530 | Msa0771790:CDS |
| GATTGAAGACCATCCCTACT+TGG | 0.492258 | 5_2:+45178891 | Msa0771790:CDS |
| CCATTGCGCCTATCATCAAC+AGG | 0.493322 | 5_2:-45177012 | None:intergenic |
| ACCTGAAGTGTTGAAATCAA+TGG | 0.500536 | 5_2:+45175761 | Msa0771790:CDS |
| TTTGTTTGTTAATAGGTTTG+AGG | 0.501255 | 5_2:+45177404 | Msa0771790:intron |
| AAAACAGCTCAGCAAGCGGC+TGG | 0.502769 | 5_2:+45177435 | Msa0771790:CDS |
| AGGTGCCGATTCAGCTCTGC+AGG | 0.505385 | 5_2:+45176729 | Msa0771790:CDS |
| TTAAGAAATGCGTAGAAGCT+AGG | 0.505525 | 5_2:+45176653 | Msa0771790:CDS |
| GGTTGAACAAAACCATAATA+CGG | 0.506340 | 5_2:+45175413 | Msa0771790:CDS |
| CCTGAAGTGTTGAAATCAAT+GGG | 0.509444 | 5_2:+45175762 | Msa0771790:CDS |
| AACCATAATACGGATAATGA+TGG | 0.516231 | 5_2:+45175423 | Msa0771790:CDS |
| CATACACAGCATATGCCTCT+TGG | 0.516784 | 5_2:-45176925 | None:intergenic |
| GCAATGGTTTACTTAGCATC+CGG | 0.522566 | 5_2:+45177028 | Msa0771790:CDS |
| CTGCTTTGATTGGATTAGGA+AGG | 0.522810 | 5_2:+45175889 | Msa0771790:CDS |
| AGACATTACGTAACCTCACC+TGG | 0.525280 | 5_2:+45178388 | Msa0771790:CDS |
| ACACAGTCTGCATTATCGTT+AGG | 0.525552 | 5_2:+45176709 | Msa0771790:CDS |
| TAATAATAATGGAAGAAAAG+TGG | 0.525995 | 5_2:+45175665 | Msa0771790:CDS |
| TGGTTATGGGGAATATTATG+AGG | 0.527211 | 5_2:+45175685 | Msa0771790:CDS |
| AGCTCGACATCATCATCCTC+CGG | 0.532167 | 5_2:+45175369 | Msa0771790:CDS |
| GTGGGAAATGAATTTGGTTG+TGG | 0.539824 | 5_2:+45175141 | Msa0771790:CDS |
| GTGTAACAAGATATTTGGTA+TGG | 0.543232 | 5_2:+45176976 | Msa0771790:CDS |
| CCTGTTGATGATAGGCGCAA+TGG | 0.546990 | 5_2:+45177012 | Msa0771790:CDS |
| TGGTTTACTTAGCATCCGGC+AGG | 0.558032 | 5_2:+45177032 | Msa0771790:CDS |
| TTTAAGAGTTGAACTAGCAC+CGG | 0.558091 | 5_2:-45175388 | None:intergenic |
| GCATGTGCAGTATACAATGA+AGG | 0.571363 | 5_2:+45177567 | Msa0771790:CDS |
| AGAAGCAATTCTTGAGTGTG+AGG | 0.574330 | 5_2:+45175917 | Msa0771790:CDS |
| CACCACGTAGCATCTTGAGT+TGG | 0.574730 | 5_2:-45178303 | None:intergenic |
| GTAACATCAGCGAGAATGAG+TGG | 0.574827 | 5_2:+45177510 | Msa0771790:CDS |
| TGTTGTGCTCTTCAGTAACA+AGG | 0.578964 | 5_2:+45178506 | Msa0771790:CDS |
| ATGGAAGAAAAGTGGTTATG+GGG | 0.585396 | 5_2:+45175673 | Msa0771790:CDS |
| AGGAGAAGTAGAAAAGGCAC+TGG | 0.585586 | 5_2:+45176561 | Msa0771790:CDS |
| ACTAATGAGTTTCTTAGCCT+AGG | 0.586693 | 5_2:-45175195 | None:intergenic |
| CCCTACTTGGCAAAATCAGA+AGG | 0.591318 | 5_2:+45178904 | Msa0771790:CDS |
| CATAACAGAACCGAGTTGTG+TGG | 0.594120 | 5_2:-45177603 | None:intergenic |
| CAGGGGATGAAGAAGTGGCA+AGG | 0.598230 | 5_2:+45178260 | Msa0771790:CDS |
| TGTTGATAAGAGAAAAGCCA+GGG | 0.605338 | 5_2:+45178242 | Msa0771790:CDS |
| AGGGGATGAAGAAGTGGCAA+GGG | 0.610194 | 5_2:+45178261 | Msa0771790:CDS |
| AAAGCCAGGGGATGAAGAAG+TGG | 0.612053 | 5_2:+45178255 | Msa0771790:CDS |
| TGTTAAAACAGCTCAGCAAG+CGG | 0.612119 | 5_2:+45177431 | Msa0771790:CDS |
| ATGTTGATAAGAGAAAAGCC+AGG | 0.618320 | 5_2:+45178241 | Msa0771790:CDS |
| AAGCGTTGCTGATGCTCGTG+AGG | 0.631944 | 5_2:+45176900 | Msa0771790:CDS |
| ATATTGTGCCTTACCAGGTG+AGG | 0.633902 | 5_2:-45178401 | None:intergenic |
| AGATCATGATCCACACAACT+CGG | 0.635525 | 5_2:+45177593 | Msa0771790:CDS |
| ACACTAGATTCAATGAAACT+CGG | 0.644942 | 5_2:+45175319 | Msa0771790:CDS |
| AAGAGTTGAACTAGCACCGG+AGG | 0.655350 | 5_2:-45175385 | None:intergenic |
| AAAACCAAAAGCAACAAGGT+GGG | 0.655464 | 5_2:+45175123 | Msa0771790:CDS |
| CTCCAACTCAAGATGCTACG+TGG | 0.662963 | 5_2:+45178301 | Msa0771790:CDS |
| GAAAACCAAAAGCAACAAGG+TGG | 0.668719 | 5_2:+45175122 | Msa0771790:CDS |
| AATGAAAACCAAAAGCAACA+AGG | 0.673063 | 5_2:+45175119 | Msa0771790:CDS |
| GTTGTGCTCTTCAGTAACAA+GGG | 0.695733 | 5_2:+45178507 | Msa0771790:CDS |
| AGTTGATCCAAGCAACAGAG+AGG | 0.724996 | 5_2:+45177458 | Msa0771790:CDS |
| GATGCTCGTGAGGTACCAAG+AGG | 0.736425 | 5_2:+45176910 | Msa0771790:CDS |
| GTTGATAAGAGAAAAGCCAG+GGG | 0.744650 | 5_2:+45178243 | Msa0771790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTTAAGAGTTTAAT+TGG | + | chr5_2:45178605-45178624 | Msa0771790:intron | 10.0% |
| !!! | TTTTGCAATAGTAATAATAA+TGG | + | chr5_2:45175654-45175673 | Msa0771790:CDS | 15.0% |
| !! | AATAAAATTGTTTATTGCTA+AGG | - | chr5_2:45176781-45176800 | None:intergenic | 15.0% |
| !!! | GATATTAAGGATTTAAAATT+TGG | + | chr5_2:45178328-45178347 | Msa0771790:CDS | 15.0% |
| !!! | TAATAATAATGGAAGAAAAG+TGG | + | chr5_2:45175665-45175684 | Msa0771790:CDS | 20.0% |
| !!! | AATTGCTATTGATTCAAATA+AGG | + | chr5_2:45175842-45175861 | Msa0771790:CDS | 20.0% |
| !!! | TATTTCTATAACAAAAGACA+AGG | + | chr5_2:45176123-45176142 | Msa0771790:intron | 20.0% |
| !!! | ATTTATGTATATTTTGCCAT+TGG | + | chr5_2:45177097-45177116 | Msa0771790:intron | 20.0% |
| !! | AATACTATTAAACAGCATAA+AGG | + | chr5_2:45177208-45177227 | Msa0771790:intron | 20.0% |
| !!! | ATTAGGAAAAATACATTTTG+TGG | - | chr5_2:45177235-45177254 | None:intergenic | 20.0% |
| !!! | TCAAACAATTTTACAGAATT+AGG | - | chr5_2:45177252-45177271 | None:intergenic | 20.0% |
| !!! | ATTGAACTTTGTTTGTTAAT+AGG | + | chr5_2:45177397-45177416 | Msa0771790:intron | 20.0% |
| !!! | ATAAATCTTTTAAAGTACCT+TGG | - | chr5_2:45177751-45177770 | None:intergenic | 20.0% |
| !!! | ATTATTTTTGTTCATGTAGT+TGG | + | chr5_2:45178186-45178205 | Msa0771790:intron | 20.0% |
| !!! | TATTTAACAGCATTTGAAAT+CGG | - | chr5_2:45178478-45178497 | None:intergenic | 20.0% |
| !! | CTAATACAACAATGATATAA+TGG | + | chr5_2:45178714-45178733 | Msa0771790:intron | 20.0% |
| !! | GTTATATAAGTAAGAAACAA+TGG | - | chr5_2:45178848-45178867 | None:intergenic | 20.0% |
| !!! | TCCATTTTTGTATATTTTGA+AGG | - | chr5_2:45178947-45178966 | None:intergenic | 20.0% |
| !! | AAATATAATGTTCCATTTGA+GGG | - | chr5_2:45179057-45179076 | None:intergenic | 20.0% |
| !! | TAAATATAATGTTCCATTTG+AGG | - | chr5_2:45179058-45179077 | None:intergenic | 20.0% |
| !!! | TCAATGTTGTTAGTTTTCAT+TGG | - | chr5_2:45175231-45175250 | None:intergenic | 25.0% |
| ! | GTTTCCAAATAAAGAACAAA+AGG | + | chr5_2:45175275-45175294 | Msa0771790:CDS | 25.0% |
| !! | TAATTCATTAAGGTTCTGAT+TGG | + | chr5_2:45176037-45176056 | Msa0771790:intron | 25.0% |
| ! | GCTTATAAAACAATTTGACT+CGG | - | chr5_2:45176149-45176168 | None:intergenic | 25.0% |
| !! | GATGTTTTCTTAAGTTAGTT+TGG | + | chr5_2:45176174-45176193 | Msa0771790:intron | 25.0% |
| ! | AGTACCAAAGATTTAAATTG+AGG | + | chr5_2:45176316-45176335 | Msa0771790:intron | 25.0% |
| ! | ATGACCTCAATTTAAATCTT+TGG | - | chr5_2:45176323-45176342 | None:intergenic | 25.0% |
| !!! | TGCAAATTTTAATGCAGATT+AGG | + | chr5_2:45176541-45176560 | Msa0771790:intron | 25.0% |
| !!! | AATTTTGATAAGATCTACAC+TGG | - | chr5_2:45176815-45176834 | None:intergenic | 25.0% |
| ! | ATTAGAGTTGTTTGTATTTG+TGG | + | chr5_2:45176855-45176874 | Msa0771790:intron | 25.0% |
| !!! | TTTAAGTTTTCTTCTCAACA+AGG | - | chr5_2:45177177-45177196 | None:intergenic | 25.0% |
| ! | CAAATTCGGTTCAAATATTA+CGG | - | chr5_2:45177302-45177321 | None:intergenic | 25.0% |
| !! | TTTGTTTGTTAATAGGTTTG+AGG | + | chr5_2:45177404-45177423 | Msa0771790:intron | 25.0% |
| ! | GATTTCAAATGCTGTTAAAT+AGG | + | chr5_2:45178477-45178496 | Msa0771790:intron | 25.0% |
| ! | TTAAAAATAAACCAACCTTG+AGG | - | chr5_2:45178596-45178615 | None:intergenic | 25.0% |
| !! | GTTATTTCAATATCGAAACT+AGG | + | chr5_2:45178822-45178841 | Msa0771790:intron | 25.0% |
| !!! | TTTTGTATATTTTGAAGGCT+GGG | - | chr5_2:45178942-45178961 | None:intergenic | 25.0% |
| !!! | TTTTTGTATATTTTGAAGGC+TGG | - | chr5_2:45178943-45178962 | None:intergenic | 25.0% |
| ! | GCCTTCAAAATATACAAAAA+TGG | + | chr5_2:45178943-45178962 | Msa0771790:CDS | 25.0% |
| AATGAAAACCAAAAGCAACA+AGG | + | chr5_2:45175119-45175138 | Msa0771790:CDS | 30.0% | |
| ! | TTTTCAATCTCAAAAGTCCT+AGG | + | chr5_2:45175178-45175197 | Msa0771790:CDS | 30.0% |
| !!! | GTTGTTAGTTTTCATTGGTA+AGG | - | chr5_2:45175226-45175245 | None:intergenic | 30.0% |
| ! | GGAACCTTTTGTTCTTTATT+TGG | - | chr5_2:45175282-45175301 | None:intergenic | 30.0% |
| TTCATTGAATCTAGTGTTGT+TGG | - | chr5_2:45175316-45175335 | None:intergenic | 30.0% | |
| ACACTAGATTCAATGAAACT+CGG | + | chr5_2:45175319-45175338 | Msa0771790:CDS | 30.0% | |
| TGCTAGTTCAACTCTTAAAA+GGG | + | chr5_2:45175392-45175411 | Msa0771790:CDS | 30.0% | |
| GGTTGAACAAAACCATAATA+CGG | + | chr5_2:45175413-45175432 | Msa0771790:CDS | 30.0% | |
| AACCATAATACGGATAATGA+TGG | + | chr5_2:45175423-45175442 | Msa0771790:CDS | 30.0% | |
| GAGTTTAACTCTAAATGCTT+AGG | - | chr5_2:45175624-45175643 | None:intergenic | 30.0% | |
| TAATGGAAGAAAAGTGGTTA+TGG | + | chr5_2:45175671-45175690 | Msa0771790:CDS | 30.0% | |
| AATGGAAGAAAAGTGGTTAT+GGG | + | chr5_2:45175672-45175691 | Msa0771790:CDS | 30.0% | |
| GGAAATGAAGCATACAAAAA+GGG | + | chr5_2:45175783-45175802 | Msa0771790:CDS | 30.0% | |
| !! | CAAAAAGGGTAATTTTGAAG+AGG | + | chr5_2:45175797-45175816 | Msa0771790:intron | 30.0% |
| TGAAATATATCGTTGCCAAA+CGG | - | chr5_2:45175983-45176002 | None:intergenic | 30.0% | |
| ACACAGTCATAATAATCATG+CGG | + | chr5_2:45176006-45176025 | Msa0771790:intron | 30.0% | |
| GGGCTTCATTTAATTCATTA+AGG | + | chr5_2:45176027-45176046 | Msa0771790:intron | 30.0% | |
| TAAACATTTGGAAGAGCTTA+TGG | - | chr5_2:45176253-45176272 | None:intergenic | 30.0% | |
| ! | GCTTATTCAATTTTATCTGC+TGG | - | chr5_2:45176278-45176297 | None:intergenic | 30.0% |
| AAGCTAGGAAATTCAATGAA+TGG | + | chr5_2:45176668-45176687 | Msa0771790:CDS | 30.0% | |
| ! | TGCCAAAATTTTCAGTTGAA+TGG | + | chr5_2:45176954-45176973 | Msa0771790:CDS | 30.0% |
| ! | CACCATTCAACTGAAAATTT+TGG | - | chr5_2:45176959-45176978 | None:intergenic | 30.0% |
| GAATGGTGTAACAAGATATT+TGG | + | chr5_2:45176971-45176990 | Msa0771790:CDS | 30.0% | |
| GTGTAACAAGATATTTGGTA+TGG | + | chr5_2:45176976-45176995 | Msa0771790:CDS | 30.0% | |
| !! | ATTTATTTTCACAAACCTGC+CGG | - | chr5_2:45177050-45177069 | None:intergenic | 30.0% |
| ACAAGGTAAGTCTCAAAAAA+GGG | - | chr5_2:45177160-45177179 | None:intergenic | 30.0% | |
| AACAAGGTAAGTCTCAAAAA+AGG | - | chr5_2:45177161-45177180 | None:intergenic | 30.0% | |
| !!! | TACATTTTCTGAGTCTTGTT+TGG | + | chr5_2:45177358-45177377 | Msa0771790:intron | 30.0% |
| TTAATGTTCAACACATGTGT+CGG | - | chr5_2:45177901-45177920 | None:intergenic | 30.0% | |
| CATTGTGATATTTCATATCG+AGG | + | chr5_2:45178012-45178031 | Msa0771790:intron | 30.0% | |
| ! | CAACATTTCATAGTCTTGAA+TGG | - | chr5_2:45178227-45178246 | None:intergenic | 30.0% |
| CAAATGCTGTTAAATAGGTA+TGG | + | chr5_2:45178482-45178501 | Msa0771790:intron | 30.0% | |
| ! | GATAATTGTGCAGATGTTTT+AGG | + | chr5_2:45178689-45178708 | Msa0771790:intron | 30.0% |
| ACTTGAGAAACAGATATGAT+TGG | - | chr5_2:45178788-45178807 | None:intergenic | 30.0% | |
| TCAAGAGTTAAAGAGATTTC+AGG | + | chr5_2:45178967-45178986 | Msa0771790:CDS | 30.0% | |
| !! | CCACGAGTTTTTAGAAAAAT+CGG | + | chr5_2:45178996-45179015 | Msa0771790:CDS | 30.0% |
| AAATATTACACTCCCTCAAA+TGG | + | chr5_2:45179042-45179061 | Msa0771790:three_prime_UTR | 30.0% | |
| !! | GTTGATTTTCCAAAATGCAA+TGG | + | chr5_2:45179090-45179109 | Msa0771790:three_prime_UTR | 30.0% |
| TTCCAAAATGCAATGGAAAA+AGG | + | chr5_2:45179097-45179116 | Msa0771790:three_prime_UTR | 30.0% | |
| AAAACCAAAAGCAACAAGGT+GGG | + | chr5_2:45175123-45175142 | Msa0771790:CDS | 35.0% | |
| AACAAGGTGGGAAATGAATT+TGG | + | chr5_2:45175135-45175154 | Msa0771790:CDS | 35.0% | |
| TGAATTTGGTTGTGGTTTCA+TGG | + | chr5_2:45175149-45175168 | Msa0771790:CDS | 35.0% | |
| ACTAATGAGTTTCTTAGCCT+AGG | - | chr5_2:45175198-45175217 | None:intergenic | 35.0% | |
| !!! | GTGTTGTTGGAGATTTTTTG+TGG | - | chr5_2:45175303-45175322 | None:intergenic | 35.0% |
| TTTAAGAGTTGAACTAGCAC+CGG | - | chr5_2:45175391-45175410 | None:intergenic | 35.0% | |
| GTGCTAGTTCAACTCTTAAA+AGG | + | chr5_2:45175391-45175410 | Msa0771790:CDS | 35.0% | |
| TGCCATCATTATCCGTATTA+TGG | - | chr5_2:45175428-45175447 | None:intergenic | 35.0% | |
| TTTCAAGGGAGAAAAGTCTT+TGG | - | chr5_2:45175544-45175563 | None:intergenic | 35.0% | |
| AAGTTTCCAGTGAGTTTCAA+GGG | - | chr5_2:45175558-45175577 | None:intergenic | 35.0% | |
| ATGGAAGAAAAGTGGTTATG+GGG | + | chr5_2:45175673-45175692 | Msa0771790:CDS | 35.0% | |
| TGGTTATGGGGAATATTATG+AGG | + | chr5_2:45175685-45175704 | Msa0771790:CDS | 35.0% | |
| !! | ACCTGAAGTGTTGAAATCAA+TGG | + | chr5_2:45175761-45175780 | Msa0771790:CDS | 35.0% |
| !! | CCTGAAGTGTTGAAATCAAT+GGG | + | chr5_2:45175762-45175781 | Msa0771790:CDS | 35.0% |
| GGGAAATGAAGCATACAAAA+AGG | + | chr5_2:45175782-45175801 | Msa0771790:CDS | 35.0% | |
| !! | GGTAATTTTGAAGAGGCTTT+GGG | + | chr5_2:45175804-45175823 | Msa0771790:intron | 35.0% |
| !! | AATAAGAGTGCTGCTTTGAT+TGG | + | chr5_2:45175879-45175898 | Msa0771790:CDS | 35.0% |
| TTGAGTGTGAGGAATCTATT+CGG | + | chr5_2:45175928-45175947 | Msa0771790:CDS | 35.0% | |
| TTGTGAGCTCTGTTATAAGA+AGG | - | chr5_2:45175960-45175979 | None:intergenic | 35.0% | |
| GTTTGGCAACGATATATTTC+AGG | + | chr5_2:45175982-45176001 | Msa0771790:intron | 35.0% | |
| CACAGTCATAATAATCATGC+GGG | + | chr5_2:45176007-45176026 | Msa0771790:intron | 35.0% | |
| ! | AAGTTAGTTTGGAGAGCTTA+TGG | + | chr5_2:45176185-45176204 | Msa0771790:intron | 35.0% |
| TTTGGAGAGCTTATGGAAAT+AGG | + | chr5_2:45176192-45176211 | Msa0771790:intron | 35.0% | |
| TATCTGCTGGCATAAACATT+TGG | - | chr5_2:45176265-45176284 | None:intergenic | 35.0% | |
| ! | TACTTTGAGCTTGTTTGGAT+TGG | - | chr5_2:45176300-45176319 | None:intergenic | 35.0% |
| ! | TTTGGTACTTTGAGCTTGTT+TGG | - | chr5_2:45176305-45176324 | None:intergenic | 35.0% |
| CAGATTAGGAGAAGTAGAAA+AGG | + | chr5_2:45176555-45176574 | Msa0771790:intron | 35.0% | |
| ! | AGTCAACATTTGAGGTTGAT+TGG | - | chr5_2:45176594-45176613 | None:intergenic | 35.0% |
| AAGTACAGAGTCAACATTTG+AGG | - | chr5_2:45176602-45176621 | None:intergenic | 35.0% | |
| TAGCTTCTACGCATTTCTTA+AGG | - | chr5_2:45176654-45176673 | None:intergenic | 35.0% | |
| TTAAGAAATGCGTAGAAGCT+AGG | + | chr5_2:45176653-45176672 | Msa0771790:CDS | 35.0% | |
| !! | TGAATGGAGTGTTGTACTTA+AGG | + | chr5_2:45176684-45176703 | Msa0771790:CDS | 35.0% |
| AGGATTAACATGTTTGAGCA+AGG | - | chr5_2:45176761-45176780 | None:intergenic | 35.0% | |
| CAAACAACTCTAATCAGCTT+AGG | - | chr5_2:45176849-45176868 | None:intergenic | 35.0% | |
| TCTCAAAAAAGGGGACTTAA+AGG | - | chr5_2:45177150-45177169 | None:intergenic | 35.0% | |
| CAAGGTAAGTCTCAAAAAAG+GGG | - | chr5_2:45177159-45177178 | None:intergenic | 35.0% | |
| ! | CTTCAAGGCATCAAAATTCA+TGG | + | chr5_2:45177542-45177561 | Msa0771790:CDS | 35.0% |
| TAAGCTAGGGCAATATGAAA+AGG | + | chr5_2:45177647-45177666 | Msa0771790:intron | 35.0% | |
| ATCCATGTTATAGCAAAGCA+AGG | + | chr5_2:45177703-45177722 | Msa0771790:intron | 35.0% | |
| ! | TTCGTAATAGTGTTGAGTGT+CGG | - | chr5_2:45177816-45177835 | None:intergenic | 35.0% |
| TTGATTGTAACCACATGTGT+CGG | + | chr5_2:45177855-45177874 | Msa0771790:intron | 35.0% | |
| AGGAGAATCACAATCAAATG+TGG | + | chr5_2:45178032-45178051 | Msa0771790:intron | 35.0% | |
| ACATTGAAACCTTGATGTAG+TGG | + | chr5_2:45178092-45178111 | Msa0771790:intron | 35.0% | |
| ! | ATGTTGATAAGAGAAAAGCC+AGG | + | chr5_2:45178241-45178260 | Msa0771790:CDS | 35.0% |
| ! | TGTTGATAAGAGAAAAGCCA+GGG | + | chr5_2:45178242-45178261 | Msa0771790:CDS | 35.0% |
| AAACTATATTGTGCCTTACC+AGG | - | chr5_2:45178409-45178428 | None:intergenic | 35.0% | |
| CCTTGAGGAAATTAACAGAT+GGG | - | chr5_2:45178581-45178600 | None:intergenic | 35.0% | |
| ACCTTGAGGAAATTAACAGA+TGG | - | chr5_2:45178582-45178601 | None:intergenic | 35.0% | |
| TCTGTTAATTTCCTCAAGGT+TGG | + | chr5_2:45178582-45178601 | Msa0771790:intron | 35.0% | |
| GTTTAATTGGTATGCACAGT+CGG | + | chr5_2:45178618-45178637 | Msa0771790:intron | 35.0% | |
| CTGCACAATTATCTTCTACA+TGG | - | chr5_2:45178682-45178701 | None:intergenic | 35.0% | |
| TAACTGAACTACGACTATTC+AGG | + | chr5_2:45178864-45178883 | Msa0771790:intron | 35.0% | |
| !! | CCGATTTTTCTAAAAACTCG+TGG | - | chr5_2:45178999-45179018 | None:intergenic | 35.0% |
| ! | GACCTTTTTCCATTGCATTT+TGG | - | chr5_2:45179102-45179121 | None:intergenic | 35.0% |
| GAAAACCAAAAGCAACAAGG+TGG | + | chr5_2:45175122-45175141 | Msa0771790:CDS | 40.0% | |
| !!! | ATTTCCCACCTTGTTGCTTT+TGG | - | chr5_2:45175130-45175149 | None:intergenic | 40.0% |
| GTGGGAAATGAATTTGGTTG+TGG | + | chr5_2:45175141-45175160 | Msa0771790:CDS | 40.0% | |
| GGGAGAAAAGTCTTTGGTTA+CGG | - | chr5_2:45175538-45175557 | None:intergenic | 40.0% | |
| ! | TTTTCTCCCTTGAAACTCAC+TGG | + | chr5_2:45175549-45175568 | Msa0771790:CDS | 40.0% |
| CAAGTTTCCAGTGAGTTTCA+AGG | - | chr5_2:45175559-45175578 | None:intergenic | 40.0% | |
| CACTCAACACTCTTTCTTCT+TGG | - | chr5_2:45175597-45175616 | None:intergenic | 40.0% | |
| !! | CCCATTGATTTCAACACTTC+AGG | - | chr5_2:45175765-45175784 | None:intergenic | 40.0% |
| !! | GGGTAATTTTGAAGAGGCTT+TGG | + | chr5_2:45175803-45175822 | Msa0771790:intron | 40.0% |
| !! | AGTGCTGCTTTGATTGGATT+AGG | + | chr5_2:45175885-45175904 | Msa0771790:CDS | 40.0% |
| ! | CTGCTTTGATTGGATTAGGA+AGG | + | chr5_2:45175889-45175908 | Msa0771790:CDS | 40.0% |
| AGAAGCAATTCTTGAGTGTG+AGG | + | chr5_2:45175917-45175936 | Msa0771790:CDS | 40.0% | |
| !! | TGTACTTGCTTTTCAAGCTC+AGG | + | chr5_2:45176615-45176634 | Msa0771790:CDS | 40.0% |
| ACACAGTCTGCATTATCGTT+AGG | + | chr5_2:45176709-45176728 | Msa0771790:CDS | 40.0% | |
| !! | AGTGCTTACCTGTTGATGAT+AGG | + | chr5_2:45177004-45177023 | Msa0771790:CDS | 40.0% |
| GCAATGGTTTACTTAGCATC+CGG | + | chr5_2:45177028-45177047 | Msa0771790:CDS | 40.0% | |
| GAACCGAATTTGCATCACAA+CGG | + | chr5_2:45177310-45177329 | Msa0771790:intron | 40.0% | |
| ACACCGTTGTGATGCAAATT+CGG | - | chr5_2:45177316-45177335 | None:intergenic | 40.0% | |
| TGTTAAAACAGCTCAGCAAG+CGG | + | chr5_2:45177431-45177450 | Msa0771790:CDS | 40.0% | |
| GAGAGGTAAATGCAGTGTTA+AGG | + | chr5_2:45177475-45177494 | Msa0771790:CDS | 40.0% | |
| GAGTGGAAACTTACTCTTCA+AGG | + | chr5_2:45177527-45177546 | Msa0771790:CDS | 40.0% | |
| GCATGTGCAGTATACAATGA+AGG | + | chr5_2:45177567-45177586 | Msa0771790:CDS | 40.0% | |
| AGATCATGATCCACACAACT+CGG | + | chr5_2:45177593-45177612 | Msa0771790:CDS | 40.0% | |
| ! | AGCCTTGCTTTGCTATAACA+TGG | - | chr5_2:45177708-45177727 | None:intergenic | 40.0% |
| GTTATAGCAAAGCAAGGCTA+AGG | + | chr5_2:45177709-45177728 | Msa0771790:intron | 40.0% | |
| ACCAGACACAAATTTGATCG+TGG | + | chr5_2:45177933-45177952 | Msa0771790:intron | 40.0% | |
| ACCACGATCAAATTTGTGTC+TGG | - | chr5_2:45177937-45177956 | None:intergenic | 40.0% | |
| AGACACAAATTTGATCGTGG+TGG | + | chr5_2:45177936-45177955 | Msa0771790:intron | 40.0% | |
| ACCAGACACAAATTTGATCG+TGG | + | chr5_2:45177933-45177952 | Msa0771790:intron | 40.0% | |
| ACCACGATCAAATTTGTGTC+TGG | - | chr5_2:45177937-45177956 | None:intergenic | 40.0% | |
| AGACACAAATTTGATCGTGG+TGG | + | chr5_2:45177936-45177955 | Msa0771790:intron | 40.0% | |
| ACAATCAAATGTGGCTGATG+TGG | + | chr5_2:45178041-45178060 | Msa0771790:intron | 40.0% | |
| TGTTCATGTAGTTGGAACGA+TGG | + | chr5_2:45178194-45178213 | Msa0771790:intron | 40.0% | |
| GTTCATGTAGTTGGAACGAT+GGG | + | chr5_2:45178195-45178214 | Msa0771790:intron | 40.0% | |
| ! | GTTGATAAGAGAAAAGCCAG+GGG | + | chr5_2:45178243-45178262 | Msa0771790:CDS | 40.0% |
| GCTACGTGGTGAAGATATTA+AGG | + | chr5_2:45178315-45178334 | Msa0771790:CDS | 40.0% | |
| TGTTGTGCTCTTCAGTAACA+AGG | + | chr5_2:45178506-45178525 | Msa0771790:CDS | 40.0% | |
| GTTGTGCTCTTCAGTAACAA+GGG | + | chr5_2:45178507-45178526 | Msa0771790:CDS | 40.0% | |
| !! | AACACACAAGCAAGTGTTGA+TGG | + | chr5_2:45178530-45178549 | Msa0771790:CDS | 40.0% |
| CCCATCTGTTAATTTCCTCA+AGG | + | chr5_2:45178578-45178597 | Msa0771790:intron | 40.0% | |
| ! | CCTTCTGATTTTGCCAAGTA+GGG | - | chr5_2:45178907-45178926 | None:intergenic | 40.0% |
| ! | ACCTTCTGATTTTGCCAAGT+AGG | - | chr5_2:45178908-45178927 | None:intergenic | 40.0% |
| GTGTGAGGAATCTATTCGGT+TGG | + | chr5_2:45175932-45175951 | Msa0771790:intron | 45.0% | |
| TAACAGAGCTCACAACCGTT+TGG | + | chr5_2:45175965-45175984 | Msa0771790:intron | 45.0% | |
| ! | AGGAGAAGTAGAAAAGGCAC+TGG | + | chr5_2:45176561-45176580 | Msa0771790:CDS | 45.0% |
| ACTAACCTGCAGAGCTGAAT+CGG | - | chr5_2:45176737-45176756 | None:intergenic | 45.0% | |
| CATACACAGCATATGCCTCT+TGG | - | chr5_2:45176928-45176947 | None:intergenic | 45.0% | |
| ACCAGCATATTGCATGCCAA+TGG | - | chr5_2:45177116-45177135 | None:intergenic | 45.0% | |
| GTAGACCACATCATGTGATG+TGG | + | chr5_2:45177276-45177295 | Msa0771790:intron | 45.0% | |
| AGTTGATCCAAGCAACAGAG+AGG | + | chr5_2:45177458-45177477 | Msa0771790:CDS | 45.0% | |
| GCATTTACCTCTCTGTTGCT+TGG | - | chr5_2:45177468-45177487 | None:intergenic | 45.0% | |
| GTAACATCAGCGAGAATGAG+TGG | + | chr5_2:45177510-45177529 | Msa0771790:CDS | 45.0% | |
| CATAACAGAACCGAGTTGTG+TGG | - | chr5_2:45177606-45177625 | None:intergenic | 45.0% | |
| ! | CAGCTTGTCGTTCTAAGCTA+GGG | + | chr5_2:45177634-45177653 | Msa0771790:intron | 45.0% |
| ATAGCAAAGCAAGGCTAAGG+AGG | + | chr5_2:45177712-45177731 | Msa0771790:intron | 45.0% | |
| TAGCAAAGCAAGGCTAAGGA+GGG | + | chr5_2:45177713-45177732 | Msa0771790:intron | 45.0% | |
| ! | GAGGGCATATTGTAATGCCA+AGG | + | chr5_2:45177731-45177750 | Msa0771790:intron | 45.0% |
| AGACATTACGTAACCTCACC+TGG | + | chr5_2:45178388-45178407 | Msa0771790:CDS | 45.0% | |
| TTACGTAACCTCACCTGGTA+AGG | + | chr5_2:45178393-45178412 | Msa0771790:intron | 45.0% | |
| ATATTGTGCCTTACCAGGTG+AGG | - | chr5_2:45178404-45178423 | None:intergenic | 45.0% | |
| AACAGATGGGAATCTCTTGC+TGG | - | chr5_2:45178568-45178587 | None:intergenic | 45.0% | |
| GATTGAAGACCATCCCTACT+TGG | + | chr5_2:45178891-45178910 | Msa0771790:CDS | 45.0% | |
| ! | CTGATTTTGCCAAGTAGGGA+TGG | - | chr5_2:45178903-45178922 | None:intergenic | 45.0% |
| CCCTACTTGGCAAAATCAGA+AGG | + | chr5_2:45178904-45178923 | Msa0771790:CDS | 45.0% | |
| !!! | CATTTTTTAAAATATATTTA+AGG | + | chr5_2:45176438-45176457 | Msa0771790:intron | 5.0% |
| AGCTCGACATCATCATCCTC+CGG | + | chr5_2:45175369-45175388 | Msa0771790:CDS | 50.0% | |
| ! | AAGAGTTGAACTAGCACCGG+AGG | - | chr5_2:45175388-45175407 | None:intergenic | 50.0% |
| GCACATTTGAGCGCGAATTG+AGG | - | chr5_2:45176354-45176373 | None:intergenic | 50.0% | |
| ATGTCTCATAACCGCCAGTG+AGG | - | chr5_2:45176386-45176405 | None:intergenic | 50.0% | |
| CCATTGCGCCTATCATCAAC+AGG | - | chr5_2:45177015-45177034 | None:intergenic | 50.0% | |
| !! | CCTGTTGATGATAGGCGCAA+TGG | + | chr5_2:45177012-45177031 | Msa0771790:CDS | 50.0% |
| TGGTTTACTTAGCATCCGGC+AGG | + | chr5_2:45177032-45177051 | Msa0771790:CDS | 50.0% | |
| GCCATTGGCATGCAATATGC+TGG | + | chr5_2:45177112-45177131 | Msa0771790:intron | 50.0% | |
| TACGGCCACATCACATGATG+TGG | - | chr5_2:45177284-45177303 | None:intergenic | 50.0% | |
| TCTCGCTGATGTTACTGCTC+TGG | - | chr5_2:45177505-45177524 | None:intergenic | 50.0% | |
| ! | GCAGCTTGTCGTTCTAAGCT+AGG | + | chr5_2:45177633-45177652 | Msa0771790:intron | 50.0% |
| AGACATGACACCGACACATG+TGG | - | chr5_2:45177868-45177887 | None:intergenic | 50.0% | |
| CGAGCTTGACCACTACATCA+AGG | - | chr5_2:45178104-45178123 | None:intergenic | 50.0% | |
| AAAGCCAGGGGATGAAGAAG+TGG | + | chr5_2:45178255-45178274 | Msa0771790:CDS | 50.0% | |
| AGGGGATGAAGAAGTGGCAA+GGG | + | chr5_2:45178261-45178280 | Msa0771790:CDS | 50.0% | |
| !! | AGTGGCAAGGGCTTTGTTTG+AGG | + | chr5_2:45178273-45178292 | Msa0771790:CDS | 50.0% |
| !! | CAAGGGCTTTGTTTGAGGCT+CGG | + | chr5_2:45178278-45178297 | Msa0771790:CDS | 50.0% |
| CTCCAACTCAAGATGCTACG+TGG | + | chr5_2:45178301-45178320 | Msa0771790:CDS | 50.0% | |
| CACCACGTAGCATCTTGAGT+TGG | - | chr5_2:45178306-45178325 | None:intergenic | 50.0% | |
| !! | CAAGCAAGTGTTGATGGTGC+TGG | + | chr5_2:45178536-45178555 | Msa0771790:intron | 50.0% |
| GACGCACGTGTGAATCGTTT+CGG | + | chr5_2:45178750-45178769 | Msa0771790:intron | 50.0% | |
| ! | AAGCGTTGCTGATGCTCGTG+AGG | + | chr5_2:45176900-45176919 | Msa0771790:CDS | 55.0% |
| ! | GATGCTCGTGAGGTACCAAG+AGG | + | chr5_2:45176910-45176929 | Msa0771790:CDS | 55.0% |
| AAAACAGCTCAGCAAGCGGC+TGG | + | chr5_2:45177435-45177454 | Msa0771790:CDS | 55.0% | |
| ! | CTTGCCACTTCTTCATCCCC+TGG | - | chr5_2:45178262-45178281 | None:intergenic | 55.0% |
| CAGGGGATGAAGAAGTGGCA+AGG | + | chr5_2:45178260-45178279 | Msa0771790:CDS | 55.0% | |
| !! | GCAAGTGTTGATGGTGCTGG+AGG | + | chr5_2:45178539-45178558 | Msa0771790:intron | 55.0% |
| TGTGCCCAATGCGACCTCAC+TGG | + | chr5_2:45176369-45176388 | Msa0771790:intron | 60.0% | |
| ACCGCCAGTGAGGTCGCATT+GGG | - | chr5_2:45176376-45176395 | None:intergenic | 60.0% | |
| AACCGCCAGTGAGGTCGCAT+TGG | - | chr5_2:45176377-45176396 | None:intergenic | 60.0% | |
| !! | AGGTGCCGATTCAGCTCTGC+AGG | + | chr5_2:45176729-45176748 | Msa0771790:CDS | 60.0% |
| GCCCAATGCGACCTCACTGG+CGG | + | chr5_2:45176372-45176391 | Msa0771790:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 45175114 | 45179133 | 45175114 | ID=Msa0771790;Name=Msa0771790 |
| chr5_2 | mRNA | 45175114 | 45179133 | 45175114 | ID=Msa0771790-mRNA-1;Parent=Msa0771790;Name=Msa0771790-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.33|0.3|1|0.33|0.3|10|95|587 |
| chr5_2 | exon | 45175114 | 45175345 | 45175114 | ID=Msa0771790-mRNA-1:exon:13666;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45175355 | 45175581 | 45175355 | ID=Msa0771790-mRNA-1:exon:13667;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45175606 | 45175804 | 45175606 | ID=Msa0771790-mRNA-1:exon:13668;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45175817 | 45175949 | 45175817 | ID=Msa0771790-mRNA-1:exon:13669;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45176558 | 45176750 | 45176558 | ID=Msa0771790-mRNA-1:exon:13670;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45176881 | 45177053 | 45176881 | ID=Msa0771790-mRNA-1:exon:13671;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45177419 | 45177642 | 45177419 | ID=Msa0771790-mRNA-1:exon:13672;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45178233 | 45178409 | 45178233 | ID=Msa0771790-mRNA-1:exon:13673;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45178499 | 45178551 | 45178499 | ID=Msa0771790-mRNA-1:exon:13674;Parent=Msa0771790-mRNA-1 |
| chr5_2 | exon | 45178886 | 45179133 | 45178886 | ID=Msa0771790-mRNA-1:exon:13675;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45175114 | 45175345 | 45175114 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45175355 | 45175581 | 45175355 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45175606 | 45175804 | 45175606 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45175817 | 45175949 | 45175817 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45176558 | 45176750 | 45176558 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45176881 | 45177053 | 45176881 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45177419 | 45177642 | 45177419 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45178233 | 45178409 | 45178233 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45178499 | 45178551 | 45178499 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | CDS | 45178886 | 45179038 | 45178886 | ID=Msa0771790-mRNA-1:cds;Parent=Msa0771790-mRNA-1 |
| chr5_2 | three_prime_UTR | 45179039 | 45179133 | 45179039 | ID=Msa0771790-mRNA-1:three_prime_utr;Parent=Msa0771790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
