Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305310 | RHN39669.1 | 96.032 | 252 | 10 | 0 | 1 | 252 | 1 | 252 | 5.08e-159 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305310 | sp|U3MMQ4|TAC1_PRUPE | 38.760 | 258 | 119 | 9 | 1 | 232 | 24 | 268 | 1.03e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305310 | A0A396GE58 | 96.032 | 252 | 10 | 0 | 1 | 252 | 1 | 252 | 2.43e-159 | 451 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0080990 | Msa1305310 | 0.803527 | 3.341356e-49 | -8.615850e-47 |
| Msa0641620 | Msa1305310 | 0.814952 | 1.185317e-51 | -8.615850e-47 |
| Msa0669840 | Msa1305310 | 0.806379 | 8.466025e-50 | -8.615850e-47 |
| Msa0680150 | Msa1305310 | 0.818334 | 2.069727e-52 | -8.615850e-47 |
| Msa0739580 | Msa1305310 | 0.823693 | 1.207542e-53 | -8.615850e-47 |
| Msa0748000 | Msa1305310 | 0.802889 | 4.527654e-49 | -8.615850e-47 |
| Msa0754030 | Msa1305310 | 0.808956 | 2.400636e-50 | -8.615850e-47 |
| Msa0778930 | Msa1305310 | 0.808967 | 2.386928e-50 | -8.615850e-47 |
| Msa0807110 | Msa1305310 | 0.809737 | 1.632238e-50 | -8.615850e-47 |
| Msa0816450 | Msa1305310 | 0.825361 | 4.887180e-54 | -8.615850e-47 |
| Msa0833040 | Msa1305310 | 0.808545 | 2.938818e-50 | -8.615850e-47 |
| Msa0147560 | Msa1305310 | 0.805263 | 1.452185e-49 | -8.615850e-47 |
| Msa0156250 | Msa1305310 | 0.806689 | 7.281911e-50 | -8.615850e-47 |
| Msa0219190 | Msa1305310 | 0.823294 | 1.496812e-53 | -8.615850e-47 |
| Msa1228190 | Msa1305310 | 0.804551 | 2.046082e-49 | -8.615850e-47 |
| Msa1228610 | Msa1305310 | 0.804726 | 1.881084e-49 | -8.615850e-47 |
| Msa1277400 | Msa1305310 | 0.987566 | 1.007705e-170 | -8.615850e-47 |
| Msa1296800 | Msa1305310 | 0.818674 | 1.732492e-52 | -8.615850e-47 |
| Msa1305310 | Msa1305510 | 0.806860 | 6.700613e-50 | -8.615850e-47 |
| Msa1305310 | Msa1307150 | 0.814353 | 1.608540e-51 | -8.615850e-47 |
| Msa1305310 | Msa1307190 | 0.934499 | 3.676274e-96 | -8.615850e-47 |
| Msa1305310 | Msa1356990 | 0.800903 | 1.158283e-48 | -8.615850e-47 |
| Msa1305310 | Msa1379970 | 0.809112 | 2.222323e-50 | -8.615850e-47 |
| Msa1305310 | Msa1406780 | 0.820112 | 8.146611e-53 | -8.615850e-47 |
| Msa1305310 | Msa1408870 | 0.809281 | 2.045154e-50 | -8.615850e-47 |
| Msa1305310 | Msa1414930 | 0.822534 | 2.250574e-53 | -8.615850e-47 |
| Msa1305310 | Msa1420060 | 0.834463 | 2.953498e-56 | -8.615850e-47 |
| Msa1305310 | Msa1421550 | 0.845926 | 2.994407e-59 | -8.615850e-47 |
| Msa1305310 | Msa1431850 | 0.817980 | 2.489041e-52 | -8.615850e-47 |
| Msa1305310 | Msa1437710 | 0.817338 | 3.473533e-52 | -8.615850e-47 |
| Msa0371540 | Msa1305310 | 0.803051 | 4.192910e-49 | -8.615850e-47 |
| Msa0406000 | Msa1305310 | 0.806452 | 8.168859e-50 | -8.615850e-47 |
| Msa0408630 | Msa1305310 | 0.801085 | 1.063270e-48 | -8.615850e-47 |
| Msa0408640 | Msa1305310 | 0.804208 | 2.411991e-49 | -8.615850e-47 |
| Msa0451400 | Msa1305310 | 0.826709 | 2.337356e-54 | -8.615850e-47 |
| Msa0999300 | Msa1305310 | 0.824854 | 6.442487e-54 | -8.615850e-47 |
| Msa1037770 | Msa1305310 | 0.800471 | 1.419058e-48 | -8.615850e-47 |
| Msa1037900 | Msa1305310 | 0.823277 | 1.510409e-53 | -8.615850e-47 |
| Msa1037910 | Msa1305310 | 0.813445 | 2.550647e-51 | -8.615850e-47 |
| Msa1041530 | Msa1305310 | 0.827589 | 1.439214e-54 | -8.615850e-47 |
| Msa1077180 | Msa1305310 | 0.807083 | 6.010757e-50 | -8.615850e-47 |
| Msa1081570 | Msa1305310 | 0.850024 | 2.217883e-60 | -8.615850e-47 |
| Msa0298240 | Msa1305310 | 0.818062 | 2.384197e-52 | -8.615850e-47 |
| Msa0306120 | Msa1305310 | 0.812000 | 5.282705e-51 | -8.615850e-47 |
| Msa0329620 | Msa1305310 | 0.821537 | 3.830046e-53 | -8.615850e-47 |
| Msa0359250 | Msa1305310 | 0.824155 | 9.406916e-54 | -8.615850e-47 |
| Msa0361260 | Msa1305310 | 0.810292 | 1.239655e-50 | -8.615850e-47 |
| Msa1123880 | Msa1305310 | 0.828154 | 1.052719e-54 | -8.615850e-47 |
| Msa1127140 | Msa1305310 | 0.840968 | 6.316075e-58 | -8.615850e-47 |
| Msa1129960 | Msa1305310 | 0.815089 | 1.105194e-51 | -8.615850e-47 |
| Msa1129970 | Msa1305310 | 0.804062 | 2.586529e-49 | -8.615850e-47 |
| Msa1166400 | Msa1305310 | 0.831043 | 2.087145e-55 | -8.615850e-47 |
| Msa1176160 | Msa1305310 | 0.929057 | 1.198290e-92 | -8.615850e-47 |
| Msa1201160 | Msa1305310 | 0.803505 | 3.376092e-49 | -8.615850e-47 |
| Msa1214830 | Msa1305310 | 0.803789 | 2.947433e-49 | -8.615850e-47 |
| Msa0492190 | Msa1305310 | 0.806525 | 7.883668e-50 | -8.615850e-47 |
| Msa0537920 | Msa1305310 | 0.814558 | 1.449431e-51 | -8.615850e-47 |
| Msa0594090 | Msa1305310 | 0.809366 | 1.960264e-50 | -8.615850e-47 |
| Msa0860280 | Msa1305310 | 0.807401 | 5.147094e-50 | -8.615850e-47 |
| Msa0867350 | Msa1305310 | 0.828624 | 8.108103e-55 | -8.615850e-47 |
| Msa0898730 | Msa1305310 | 0.823716 | 1.192206e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305310 | MtrunA17_Chr8g0346321 | 96.032 | 252 | 10 | 0 | 1 | 252 | 1 | 252 | 4.67e-163 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1305310 | AT2G46640.2 | 30.736 | 231 | 125 | 9 | 12 | 226 | 38 | 249 | 5.93e-15 | 73.2 |
| Msa1305310 | AT2G46640.1 | 30.736 | 231 | 125 | 9 | 12 | 226 | 26 | 237 | 6.32e-15 | 72.8 |
| Msa1305310 | AT2G46640.3 | 30.736 | 231 | 125 | 9 | 12 | 226 | 40 | 251 | 6.55e-15 | 73.2 |
| Msa1305310 | AT2G46640.4 | 30.736 | 231 | 125 | 9 | 12 | 226 | 40 | 251 | 8.66e-15 | 72.8 |
Find 60 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCACATGGTTCAATTCTT+TGG | 0.203507 | 8_3:+68725326 | None:intergenic |
| AGAAAGTTGGCAACCGAATT+TGG | 0.231188 | 8_3:+68728239 | None:intergenic |
| ATTCGGTTGCCAACTTTCTA+AGG | 0.265173 | 8_3:-68728235 | Msa1305310:five_prime_UTR |
| CTTCCAAAGCAAAGTATTCT+TGG | 0.268337 | 8_3:+68727682 | None:intergenic |
| CTTCGCTCCATTTGCAACTT+AGG | 0.315676 | 8_3:-68727959 | Msa1305310:intron |
| GTATTCTTGGTGATTGTTCA+TGG | 0.327683 | 8_3:+68727695 | None:intergenic |
| CATGGTGTGATTTACCTTCA+TGG | 0.334098 | 8_3:+68728204 | None:intergenic |
| AACCTTCACCACACCAAATT+CGG | 0.343239 | 8_3:-68728252 | Msa1305310:five_prime_UTR |
| ATGGGAGTGTCACTGTTATC+TGG | 0.356185 | 8_3:-68725414 | Msa1305310:three_prime_UTR |
| GAAGATTATTCCCCTTGTTA+AGG | 0.356621 | 8_3:-68727256 | Msa1305310:CDS |
| GTTTGTTACAGATCTTCAAT+TGG | 0.412010 | 8_3:-68728044 | Msa1305310:intron |
| TCACCAAGAATACTTTGCTT+TGG | 0.419615 | 8_3:-68727685 | Msa1305310:CDS |
| TATCTGTGAGACTATATATA+TGG | 0.426739 | 8_3:-68725239 | Msa1305310:three_prime_UTR |
| ATTCTTACCATTGGTACTCT+TGG | 0.429438 | 8_3:-68727735 | Msa1305310:CDS |
| GTTTAATTTCCTTAGAAAGT+TGG | 0.431940 | 8_3:+68728226 | None:intergenic |
| TGTGTTCATGTTGTTTCTGT+TGG | 0.432041 | 8_3:-68725293 | Msa1305310:three_prime_UTR |
| ACTTGACTCAACCAAGACTT+TGG | 0.432800 | 8_3:+68727323 | None:intergenic |
| TTTGTTACAGATCTTCAATT+GGG | 0.432814 | 8_3:-68728043 | Msa1305310:intron |
| ACTTTCTTGATGTCTTTCAT+TGG | 0.437252 | 8_3:+68727222 | None:intergenic |
| AATAATGATTAGAAACTTCA+AGG | 0.437546 | 8_3:-68727487 | Msa1305310:CDS |
| AAACCGTTGAGAGTGTTGTT+AGG | 0.437651 | 8_3:+68728003 | None:intergenic |
| ATGATTTCATGACAAATCAT+AGG | 0.438088 | 8_3:+68727447 | None:intergenic |
| TCAAATGTGTTGTTGATCAA+TGG | 0.438577 | 8_3:+68727582 | None:intergenic |
| TTTGGAACCTAAGTTGCAAA+TGG | 0.442908 | 8_3:+68727952 | None:intergenic |
| TTTCCAATCACCGAGCATAT+CGG | 0.445673 | 8_3:+68727764 | None:intergenic |
| TGACCGATATGCTCGGTGAT+TGG | 0.446300 | 8_3:-68727767 | Msa1305310:CDS |
| TGATTCTTGACATCAAGATC+TGG | 0.455218 | 8_3:+68726858 | None:intergenic |
| ATTTGATGAGAACAACTTTG+AGG | 0.478699 | 8_3:-68727565 | Msa1305310:CDS |
| TTATCAGTGTTGTTGATTGA+AGG | 0.480019 | 8_3:+68727816 | None:intergenic |
| ATTAATAACCACATGAATGA+AGG | 0.483710 | 8_3:-68726816 | Msa1305310:CDS |
| ACGTATGAGATTAAATACTT+AGG | 0.485233 | 8_3:-68725370 | Msa1305310:three_prime_UTR |
| TGATGAAGAAGATGCTAAAG+AGG | 0.486614 | 8_3:-68726890 | Msa1305310:CDS |
| TATGATTTGTCATGAAATCA+TGG | 0.489589 | 8_3:-68727445 | Msa1305310:CDS |
| TTGAATCTGATCAAAAGAAA+AGG | 0.490869 | 8_3:-68727410 | Msa1305310:CDS |
| TGATGATGATGCTAGAAAAG+AGG | 0.505541 | 8_3:-68727514 | Msa1305310:CDS |
| CTAAGGAAATTAAACCATGA+AGG | 0.509618 | 8_3:-68728218 | Msa1305310:intron |
| TTATTCTGCAGCCAAAGTCT+TGG | 0.511362 | 8_3:-68727334 | Msa1305310:CDS |
| TTTCTATGATGTTGAACAAG+AGG | 0.511917 | 8_3:-68727613 | Msa1305310:CDS |
| AGCCATTGCCTTCATTCATG+TGG | 0.516778 | 8_3:+68726808 | None:intergenic |
| TACTAGCTAGCGTTAAGCCA+TGG | 0.518868 | 8_3:-68725433 | Msa1305310:three_prime_UTR |
| TCTTCAATTGGGTGCACAAG+AGG | 0.532391 | 8_3:-68728032 | Msa1305310:five_prime_UTR |
| AAAGACGGAATTCTTACCAT+TGG | 0.543523 | 8_3:-68727744 | Msa1305310:CDS |
| AAACTTCAAGGAAATTGTTG+AGG | 0.544282 | 8_3:-68727475 | Msa1305310:CDS |
| CATCCTAACAACACTCTCAA+CGG | 0.551417 | 8_3:-68728006 | Msa1305310:five_prime_UTR |
| ACTAGCTAGCGTTAAGCCAT+GGG | 0.553704 | 8_3:-68725432 | Msa1305310:three_prime_UTR |
| AACCGAATTTGGTGTGGTGA+AGG | 0.554082 | 8_3:+68728250 | None:intergenic |
| CTTCAAGGAAATTGTTGAGG+TGG | 0.564269 | 8_3:-68727472 | Msa1305310:CDS |
| ATCATAGCCAAGAGTACCAA+TGG | 0.569824 | 8_3:+68727728 | None:intergenic |
| CATCATCATCAACTACATCA+TGG | 0.574853 | 8_3:+68727526 | None:intergenic |
| ATGCTCGGTGATTGGAAAGA+CGG | 0.581029 | 8_3:-68727759 | Msa1305310:CDS |
| TCTTGACATCAAGATCTGGA+TGG | 0.589109 | 8_3:+68726862 | None:intergenic |
| TGAATGAAGGCAATGGCTCA+AGG | 0.597220 | 8_3:-68726803 | Msa1305310:CDS |
| TGATTGTTCATGGATTTCAA+AGG | 0.604206 | 8_3:+68727705 | None:intergenic |
| AACCACATGAATGAAGGCAA+TGG | 0.612697 | 8_3:-68726810 | Msa1305310:CDS |
| AGATAACAGTGACACTCCCA+TGG | 0.629854 | 8_3:+68725416 | None:intergenic |
| GTTGCTTTGACCGATATGCT+CGG | 0.632441 | 8_3:-68727774 | Msa1305310:CDS |
| TCTTAACATCAGAATCAGCA+AGG | 0.653265 | 8_3:+68727367 | None:intergenic |
| GTTGGCAACCGAATTTGGTG+TGG | 0.690791 | 8_3:+68728244 | None:intergenic |
| ACACAAATTACAAAATCACA+TGG | 0.699258 | 8_3:+68725313 | None:intergenic |
| GATTTGTCATGAAATCATGG+AGG | 0.748556 | 8_3:-68727442 | Msa1305310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATAAATTTATTTTTGTT+TGG | + | chr8_3:68727578-68727597 | None:intergenic | 10.0% |
| !! | GAATTGAAAAAAATTAATTT+GGG | + | chr8_3:68727749-68727768 | None:intergenic | 10.0% |
| !! | TGAATTGAAAAAAATTAATT+TGG | + | chr8_3:68727750-68727769 | None:intergenic | 10.0% |
| !!! | AATTAATTTTTTTCAATTCA+TGG | - | chr8_3:68727750-68727769 | Msa1305310:CDS | 10.0% |
| !!! | TATAAATTTTGTCAAAAAAA+GGG | + | chr8_3:68727902-68727921 | None:intergenic | 10.0% |
| !!! | ATCATATATTATGAAATTTT+TGG | - | chr8_3:68727976-68727995 | Msa1305310:five_prime_UTR | 10.0% |
| !!! | TCATATATTATGAAATTTTT+GGG | - | chr8_3:68727977-68727996 | Msa1305310:five_prime_UTR | 10.0% |
| !!! | TTTATTTTAGACACAAAATT+TGG | + | chr8_3:68725535-68725554 | None:intergenic | 15.0% |
| !! | TCAAGCAAATAATTAATTAT+TGG | + | chr8_3:68726516-68726535 | None:intergenic | 15.0% |
| !! | ATTATTTGCTTGAAATTAAT+TGG | - | chr8_3:68726523-68726542 | Msa1305310:intron | 15.0% |
| !!! | CTAAATAATCATTTGATTTT+AGG | - | chr8_3:68726938-68726957 | Msa1305310:intron | 15.0% |
| !!! | CTATAAATTTTGTCAAAAAA+AGG | + | chr8_3:68727903-68727922 | None:intergenic | 15.0% |
| !!! | CACAATTTTTAAGACAATAA+AGG | + | chr8_3:68725350-68725369 | None:intergenic | 20.0% |
| !! | AATAATGATTAGAAACTTCA+AGG | - | chr8_3:68725979-68725998 | Msa1305310:intron | 20.0% |
| !! | TAATTACATATATAGCCTTT+AGG | + | chr8_3:68726296-68726315 | None:intergenic | 20.0% |
| !!! | ATTTATTTCCATTTTCACAA+TGG | - | chr8_3:68726400-68726419 | Msa1305310:intron | 20.0% |
| !! | ATATTATCATTTACTTGTGA+TGG | - | chr8_3:68726750-68726769 | Msa1305310:intron | 20.0% |
| !!! | TGTTTTTAAGATAAATGGAT+AGG | - | chr8_3:68727210-68727229 | Msa1305310:intron | 20.0% |
| !!! | AGTGTTGATTTTTTTTACAA+AGG | + | chr8_3:68727278-68727297 | None:intergenic | 20.0% |
| !! | AATAATACTAAGTGAATGTT+TGG | + | chr8_3:68727670-68727689 | None:intergenic | 20.0% |
| !!! | AAAAAATTAATTTGGGAAAC+AGG | + | chr8_3:68727742-68727761 | None:intergenic | 20.0% |
| !!! | TATGAAATTTTTGGGTTTTT+TGG | - | chr8_3:68727985-68728004 | Msa1305310:five_prime_UTR | 20.0% |
| !! | GTTTAATTTCCTTAGAAAGT+TGG | + | chr8_3:68725243-68725262 | None:intergenic | 25.0% |
| ! | CATATGCATGAGAAATATAA+TGG | + | chr8_3:68725302-68725321 | None:intergenic | 25.0% |
| ! | TTTGTTACAGATCTTCAATT+GGG | - | chr8_3:68725423-68725442 | Msa1305310:three_prime_UTR | 25.0% |
| !!! | GTTTGTTGTTTTTACTTAGA+TGG | - | chr8_3:68725599-68725618 | Msa1305310:intron | 25.0% |
| ! | ATGATTTCATGACAAATCAT+AGG | + | chr8_3:68726022-68726041 | None:intergenic | 25.0% |
| !! | TATGATTTGTCATGAAATCA+TGG | - | chr8_3:68726021-68726040 | Msa1305310:intron | 25.0% |
| ! | TTGAATCTGATCAAAAGAAA+AGG | - | chr8_3:68726056-68726075 | Msa1305310:intron | 25.0% |
| !!! | CCATTTTTTGCTTTAAGTTT+TGG | + | chr8_3:68726175-68726194 | None:intergenic | 25.0% |
| ! | CCAAAACTTAAAGCAAAAAA+TGG | - | chr8_3:68726172-68726191 | Msa1305310:intron | 25.0% |
| ! | TTGCTTGAAATTAATTGGTT+AGG | - | chr8_3:68726528-68726547 | Msa1305310:intron | 25.0% |
| ! | ATTAATAACCACATGAATGA+AGG | - | chr8_3:68726650-68726669 | Msa1305310:intron | 25.0% |
| ! | AAAAAGACAGTTCATGAAAA+GGG | + | chr8_3:68726729-68726748 | None:intergenic | 25.0% |
| ! | AAAAAAGACAGTTCATGAAA+AGG | + | chr8_3:68726730-68726749 | None:intergenic | 25.0% |
| ! | ATGCATGTCTCAAATTAATT+TGG | - | chr8_3:68726809-68726828 | Msa1305310:CDS | 25.0% |
| ! | GTAAACTCTTAGATACTTTA+GGG | - | chr8_3:68726960-68726979 | Msa1305310:intron | 25.0% |
| !! | CTGTATCATTCCAATTTTAT+CGG | - | chr8_3:68727063-68727082 | Msa1305310:intron | 25.0% |
| ! | ATTAATTTATAGTCCTTTCG+AGG | + | chr8_3:68727093-68727112 | None:intergenic | 25.0% |
| ! | TTTATCTTAAAAACAGAAGG+AGG | + | chr8_3:68727205-68727224 | None:intergenic | 25.0% |
| ! | CCATTTATCTTAAAAACAGA+AGG | + | chr8_3:68727208-68727227 | None:intergenic | 25.0% |
| !!! | CCTTCTGTTTTTAAGATAAA+TGG | - | chr8_3:68727205-68727224 | Msa1305310:intron | 25.0% |
| ! | AAGATAAATGGATAGGTATA+TGG | - | chr8_3:68727217-68727236 | Msa1305310:intron | 25.0% |
| ! | TCTAAAAAAACACTCAAACT+GGG | - | chr8_3:68727310-68727329 | Msa1305310:CDS | 25.0% |
| !! | CAAACATGATTTTATAGAGT+TGG | + | chr8_3:68727463-68727482 | None:intergenic | 25.0% |
| ! | TCAATATCACTTGAATAGAT+TGG | + | chr8_3:68727837-68727856 | None:intergenic | 25.0% |
| ! | ATCTATTCAAGTGATATTGA+TGG | - | chr8_3:68727837-68727856 | Msa1305310:exon | 25.0% |
| ! | ACGTATGAGATTAAATACTT+AGG | - | chr8_3:68728096-68728115 | Msa1305310:intron | 25.0% |
| ! | ACACAAATTACAAAATCACA+TGG | + | chr8_3:68728156-68728175 | None:intergenic | 25.0% |
| ! | TATCTGTGAGACTATATATA+TGG | - | chr8_3:68728227-68728246 | Msa1305310:five_prime_UTR | 25.0% |
| CTAAGGAAATTAAACCATGA+AGG | - | chr8_3:68725248-68725267 | Msa1305310:three_prime_UTR | 30.0% | |
| ! | GTTTGTTACAGATCTTCAAT+TGG | - | chr8_3:68725422-68725441 | Msa1305310:three_prime_UTR | 30.0% |
| ! | TTATCAGTGTTGTTGATTGA+AGG | + | chr8_3:68725653-68725672 | None:intergenic | 30.0% |
| TGATTGTTCATGGATTTCAA+AGG | + | chr8_3:68725764-68725783 | None:intergenic | 30.0% | |
| TTTCTATGATGTTGAACAAG+AGG | - | chr8_3:68725853-68725872 | Msa1305310:intron | 30.0% | |
| ! | TCAAATGTGTTGTTGATCAA+TGG | + | chr8_3:68725887-68725906 | None:intergenic | 30.0% |
| ATTTGATGAGAACAACTTTG+AGG | - | chr8_3:68725901-68725920 | Msa1305310:intron | 30.0% | |
| AAACTTCAAGGAAATTGTTG+AGG | - | chr8_3:68725991-68726010 | Msa1305310:intron | 30.0% | |
| ACTTTCTTGATGTCTTTCAT+TGG | + | chr8_3:68726247-68726266 | None:intergenic | 30.0% | |
| ! | TATCATTTACTTGTGATGGA+AGG | - | chr8_3:68726754-68726773 | Msa1305310:intron | 30.0% |
| ! | ATGATAACCTTTTCAACCTA+AGG | + | chr8_3:68726874-68726893 | None:intergenic | 30.0% |
| GGTAAACTCTTAGATACTTT+AGG | - | chr8_3:68726959-68726978 | Msa1305310:intron | 30.0% | |
| CGATAAAATTGGAATGATAC+AGG | + | chr8_3:68727065-68727084 | None:intergenic | 30.0% | |
| TACATACACAATTAAACTCG+AGG | - | chr8_3:68727152-68727171 | Msa1305310:intron | 30.0% | |
| ACAGAAGGAGGATAAAATTA+AGG | + | chr8_3:68727193-68727212 | None:intergenic | 30.0% | |
| !!! | CAGTTTGAGTGTTTTTTTAG+AGG | + | chr8_3:68727311-68727330 | None:intergenic | 30.0% |
| ! | CTCTAAAAAAACACTCAAAC+TGG | - | chr8_3:68727309-68727328 | Msa1305310:CDS | 30.0% |
| CCAAGAAAAAAGAGTTTAAG+AGG | + | chr8_3:68727337-68727356 | None:intergenic | 30.0% | |
| !!! | CCTCTTAAACTCTTTTTTCT+TGG | - | chr8_3:68727334-68727353 | Msa1305310:CDS | 30.0% |
| ! | TTATAGAGTTGGAATGCTTT+TGG | + | chr8_3:68727452-68727471 | None:intergenic | 30.0% |
| ! | TAATATGCCTCTTTTTGTAG+TGG | - | chr8_3:68727871-68727890 | Msa1305310:intron | 30.0% |
| !!! | GTTTTTTGGATTAACCTTTC+TGG | - | chr8_3:68727999-68728018 | Msa1305310:five_prime_UTR | 30.0% |
| AATCACATGGTTCAATTCTT+TGG | + | chr8_3:68728143-68728162 | None:intergenic | 30.0% | |
| ! | TTTGGAACCTAAGTTGCAAA+TGG | + | chr8_3:68725517-68725536 | None:intergenic | 35.0% |
| AAAGACGGAATTCTTACCAT+TGG | - | chr8_3:68725722-68725741 | Msa1305310:intron | 35.0% | |
| ATTCTTACCATTGGTACTCT+TGG | - | chr8_3:68725731-68725750 | Msa1305310:intron | 35.0% | |
| ! | GTATTCTTGGTGATTGTTCA+TGG | + | chr8_3:68725774-68725793 | None:intergenic | 35.0% |
| TCACCAAGAATACTTTGCTT+TGG | - | chr8_3:68725781-68725800 | Msa1305310:intron | 35.0% | |
| ! | CTTCCAAAGCAAAGTATTCT+TGG | + | chr8_3:68725787-68725806 | None:intergenic | 35.0% |
| CATCATCATCAACTACATCA+TGG | + | chr8_3:68725943-68725962 | None:intergenic | 35.0% | |
| ! | TGATGATGATGCTAGAAAAG+AGG | - | chr8_3:68725952-68725971 | Msa1305310:intron | 35.0% |
| GATTTGTCATGAAATCATGG+AGG | - | chr8_3:68726024-68726043 | Msa1305310:intron | 35.0% | |
| TCTTAACATCAGAATCAGCA+AGG | + | chr8_3:68726102-68726121 | None:intergenic | 35.0% | |
| GAAGATTATTCCCCTTGTTA+AGG | - | chr8_3:68726210-68726229 | Msa1305310:intron | 35.0% | |
| ! | ACGTGCATTTTCCTTAACAA+GGG | + | chr8_3:68726224-68726243 | None:intergenic | 35.0% |
| CATTGACACCATTGTGAAAA+TGG | + | chr8_3:68726411-68726430 | None:intergenic | 35.0% | |
| TTGTAGATAGGATAGTGTTG+AGG | - | chr8_3:68726490-68726509 | Msa1305310:intron | 35.0% | |
| TGATGAAGAAGATGCTAAAG+AGG | - | chr8_3:68726576-68726595 | Msa1305310:intron | 35.0% | |
| TGATTCTTGACATCAAGATC+TGG | + | chr8_3:68726611-68726630 | None:intergenic | 35.0% | |
| ! | AGGTCTTTTATCGCAGTTTA+AGG | - | chr8_3:68726683-68726702 | Msa1305310:intron | 35.0% |
| ACATGACAAACACATACCTT+AGG | - | chr8_3:68726855-68726874 | Msa1305310:CDS | 35.0% | |
| !! | ACACATACCTTAGGTTGAAA+AGG | - | chr8_3:68726864-68726883 | Msa1305310:CDS | 35.0% |
| !! | ACTTTAGGGTTTAGTCGTAT+CGG | - | chr8_3:68726974-68726993 | Msa1305310:intron | 35.0% |
| ATGGATAGGTATATGGATGA+TGG | - | chr8_3:68727224-68727243 | Msa1305310:CDS | 35.0% | |
| TAACATCCTATCAGTTAAGC+AGG | - | chr8_3:68727361-68727380 | Msa1305310:CDS | 35.0% | |
| ATGTATCCTGCTTAACTGAT+AGG | + | chr8_3:68727370-68727389 | None:intergenic | 35.0% | |
| TTTCAGTGAAGATAGATGCA+GGG | - | chr8_3:68727708-68727727 | Msa1305310:CDS | 35.0% | |
| ATGTTTCAGGGTAATTCTGT+GGG | + | chr8_3:68727782-68727801 | None:intergenic | 35.0% | |
| ! | CTCTTTGTTTGGATGTTTCA+GGG | + | chr8_3:68727794-68727813 | None:intergenic | 35.0% |
| GCTATATGAACCTCTTTGTT+TGG | + | chr8_3:68727805-68727824 | None:intergenic | 35.0% | |
| GGTTTAACCACTACAAAAAG+AGG | + | chr8_3:68727881-68727900 | None:intergenic | 35.0% | |
| !! | TGTGTTCATGTTGTTTCTGT+TGG | - | chr8_3:68728173-68728192 | Msa1305310:intron | 35.0% |
| AACCTTCACCACACCAAATT+CGG | - | chr8_3:68725214-68725233 | Msa1305310:three_prime_UTR | 40.0% | |
| AGAAAGTTGGCAACCGAATT+TGG | + | chr8_3:68725230-68725249 | None:intergenic | 40.0% | |
| ATTCGGTTGCCAACTTTCTA+AGG | - | chr8_3:68725231-68725250 | Msa1305310:three_prime_UTR | 40.0% | |
| CATGGTGTGATTTACCTTCA+TGG | + | chr8_3:68725265-68725284 | None:intergenic | 40.0% | |
| CATCCTAACAACACTCTCAA+CGG | - | chr8_3:68725460-68725479 | Msa1305310:intron | 40.0% | |
| !! | AAACCGTTGAGAGTGTTGTT+AGG | + | chr8_3:68725466-68725485 | None:intergenic | 40.0% |
| TTTCCAATCACCGAGCATAT+CGG | + | chr8_3:68725705-68725724 | None:intergenic | 40.0% | |
| !! | ATCATAGCCAAGAGTACCAA+TGG | + | chr8_3:68725741-68725760 | None:intergenic | 40.0% |
| CTTCAAGGAAATTGTTGAGG+TGG | - | chr8_3:68725994-68726013 | Msa1305310:intron | 40.0% | |
| TTATTCTGCAGCCAAAGTCT+TGG | - | chr8_3:68726132-68726151 | Msa1305310:intron | 40.0% | |
| ACTTGACTCAACCAAGACTT+TGG | + | chr8_3:68726146-68726165 | None:intergenic | 40.0% | |
| ! | CGTGCATTTTCCTTAACAAG+GGG | + | chr8_3:68726223-68726242 | None:intergenic | 40.0% |
| ! | GACGTGCATTTTCCTTAACA+AGG | + | chr8_3:68726225-68726244 | None:intergenic | 40.0% |
| CTACATCATGCACTTCCTAA+AGG | - | chr8_3:68726278-68726297 | Msa1305310:intron | 40.0% | |
| ATCTACAAAAGAGTCCTCAC+TGG | + | chr8_3:68726478-68726497 | None:intergenic | 40.0% | |
| ! | GTGAGGACTCTTTTGTAGAT+AGG | - | chr8_3:68726478-68726497 | Msa1305310:intron | 40.0% |
| TCTTGACATCAAGATCTGGA+TGG | + | chr8_3:68726607-68726626 | None:intergenic | 40.0% | |
| AACCACATGAATGAAGGCAA+TGG | - | chr8_3:68726656-68726675 | Msa1305310:intron | 40.0% | |
| ! | TACTTGTGATGGAAGGTTTG+TGG | - | chr8_3:68726761-68726780 | Msa1305310:intron | 40.0% |
| TCGAGGACATCCGATAAAAT+TGG | + | chr8_3:68727076-68727095 | None:intergenic | 40.0% | |
| ! | TTTTATCGGATGTCCTCGAA+AGG | - | chr8_3:68727077-68727096 | Msa1305310:intron | 40.0% |
| CTTTCAGTGAAGATAGATGC+AGG | - | chr8_3:68727707-68727726 | Msa1305310:CDS | 40.0% | |
| GATGTTTCAGGGTAATTCTG+TGG | + | chr8_3:68727783-68727802 | None:intergenic | 40.0% | |
| ! | CCTCTTTGTTTGGATGTTTC+AGG | + | chr8_3:68727795-68727814 | None:intergenic | 40.0% |
| CCTGAAACATCCAAACAAAG+AGG | - | chr8_3:68727792-68727811 | Msa1305310:CDS | 40.0% | |
| !! | TAACCTTTCTGGTTTGTTGC+AGG | - | chr8_3:68728010-68728029 | Msa1305310:five_prime_UTR | 40.0% |
| !! | AACCGAATTTGGTGTGGTGA+AGG | + | chr8_3:68725219-68725238 | None:intergenic | 45.0% |
| TCTTCAATTGGGTGCACAAG+AGG | - | chr8_3:68725434-68725453 | Msa1305310:three_prime_UTR | 45.0% | |
| CTTCGCTCCATTTGCAACTT+AGG | - | chr8_3:68725507-68725526 | Msa1305310:intron | 45.0% | |
| ! | GTTGCTTTGACCGATATGCT+CGG | - | chr8_3:68725692-68725711 | Msa1305310:intron | 45.0% |
| ! | ATGCTCGGTGATTGGAAAGA+CGG | - | chr8_3:68725707-68725726 | Msa1305310:intron | 45.0% |
| GCTTCATAGTTTGACCAGTG+AGG | - | chr8_3:68726461-68726480 | Msa1305310:intron | 45.0% | |
| AGCCATTGCCTTCATTCATG+TGG | + | chr8_3:68726661-68726680 | None:intergenic | 45.0% | |
| TGAATGAAGGCAATGGCTCA+AGG | - | chr8_3:68726663-68726682 | Msa1305310:intron | 45.0% | |
| TCAGGGTAATTCTGTGGGAT+GGG | + | chr8_3:68727777-68727796 | None:intergenic | 45.0% | |
| TTCAGGGTAATTCTGTGGGA+TGG | + | chr8_3:68727778-68727797 | None:intergenic | 45.0% | |
| GTACCTGCAACAAACCAGAA+AGG | + | chr8_3:68728016-68728035 | None:intergenic | 45.0% | |
| TACTAGCTAGCGTTAAGCCA+TGG | - | chr8_3:68728033-68728052 | Msa1305310:five_prime_UTR | 45.0% | |
| ACTAGCTAGCGTTAAGCCAT+GGG | - | chr8_3:68728034-68728053 | Msa1305310:five_prime_UTR | 45.0% | |
| AGATAACAGTGACACTCCCA+TGG | + | chr8_3:68728053-68728072 | None:intergenic | 45.0% | |
| !! | ATGGGAGTGTCACTGTTATC+TGG | - | chr8_3:68728052-68728071 | Msa1305310:intron | 45.0% |
| !! | AAAATTAATTAATAGAAAAA+TGG | + | chr8_3:68727486-68727505 | None:intergenic | 5.0% |
| ! | GTTGGCAACCGAATTTGGTG+TGG | + | chr8_3:68725225-68725244 | None:intergenic | 50.0% |
| ATGGCTGTGTTGTGTGTGCA+TGG | + | chr8_3:68725283-68725302 | None:intergenic | 50.0% | |
| ! | TGACCGATATGCTCGGTGAT+TGG | - | chr8_3:68725699-68725718 | Msa1305310:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 68725198 | 68728290 | 68725198 | ID=Msa1305310;Name=Msa1305310 |
| chr8_3 | mRNA | 68725198 | 68728290 | 68725198 | ID=Msa1305310-mRNA-1;Parent=Msa1305310;Name=Msa1305310-mRNA-1;_AED=0.11;_eAED=0.11;_QI=185|1|1|1|0.5|0.2|5|260|252 |
| chr8_3 | exon | 68725198 | 68725456 | 68725198 | ID=Msa1305310-mRNA-1:exon:21300;Parent=Msa1305310-mRNA-1 |
| chr8_3 | exon | 68726784 | 68726913 | 68726784 | ID=Msa1305310-mRNA-1:exon:21299;Parent=Msa1305310-mRNA-1 |
| chr8_3 | exon | 68727224 | 68727870 | 68727224 | ID=Msa1305310-mRNA-1:exon:21298;Parent=Msa1305310-mRNA-1 |
| chr8_3 | exon | 68727960 | 68728055 | 68727960 | ID=Msa1305310-mRNA-1:exon:21297;Parent=Msa1305310-mRNA-1 |
| chr8_3 | exon | 68728219 | 68728290 | 68728219 | ID=Msa1305310-mRNA-1:exon:21296;Parent=Msa1305310-mRNA-1 |
| chr8_3 | five_prime_UTR | 68728219 | 68728290 | 68728219 | ID=Msa1305310-mRNA-1:five_prime_utr;Parent=Msa1305310-mRNA-1 |
| chr8_3 | five_prime_UTR | 68727960 | 68728055 | 68727960 | ID=Msa1305310-mRNA-1:five_prime_utr;Parent=Msa1305310-mRNA-1 |
| chr8_3 | five_prime_UTR | 68727854 | 68727870 | 68727854 | ID=Msa1305310-mRNA-1:five_prime_utr;Parent=Msa1305310-mRNA-1 |
| chr8_3 | CDS | 68727224 | 68727853 | 68727224 | ID=Msa1305310-mRNA-1:cds;Parent=Msa1305310-mRNA-1 |
| chr8_3 | CDS | 68726785 | 68726913 | 68726785 | ID=Msa1305310-mRNA-1:cds;Parent=Msa1305310-mRNA-1 |
| chr8_3 | three_prime_UTR | 68726784 | 68726784 | 68726784 | ID=Msa1305310-mRNA-1:three_prime_utr;Parent=Msa1305310-mRNA-1 |
| chr8_3 | three_prime_UTR | 68725198 | 68725456 | 68725198 | ID=Msa1305310-mRNA-1:three_prime_utr;Parent=Msa1305310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
