Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277400 | RHN39669.1 | 96.032 | 252 | 10 | 0 | 1 | 252 | 1 | 252 | 5.08e-159 | 451 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277400 | sp|U3MMQ4|TAC1_PRUPE | 38.760 | 258 | 119 | 9 | 1 | 232 | 24 | 268 | 1.03e-42 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277400 | A0A396GE58 | 96.032 | 252 | 10 | 0 | 1 | 252 | 1 | 252 | 2.43e-159 | 451 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022640 | Msa1277400 | 0.803238 | 3.835364e-49 | -8.615850e-47 |
| Msa0050040 | Msa1277400 | 0.801332 | 9.467653e-49 | -8.615850e-47 |
| Msa0080990 | Msa1277400 | 0.810570 | 1.079337e-50 | -8.615850e-47 |
| Msa0102990 | Msa1277400 | 0.800236 | 1.584422e-48 | -8.615850e-47 |
| Msa0641620 | Msa1277400 | 0.820872 | 5.450898e-53 | -8.615850e-47 |
| Msa0669840 | Msa1277400 | 0.820898 | 5.378021e-53 | -8.615850e-47 |
| Msa0680150 | Msa1277400 | 0.824435 | 8.084200e-54 | -8.615850e-47 |
| Msa0739580 | Msa1277400 | 0.829624 | 4.637555e-55 | -8.615850e-47 |
| Msa0748000 | Msa1277400 | 0.809443 | 1.887502e-50 | -8.615850e-47 |
| Msa0754030 | Msa1277400 | 0.809478 | 1.855433e-50 | -8.615850e-47 |
| Msa0778930 | Msa1277400 | 0.815699 | 8.086742e-52 | -8.615850e-47 |
| Msa0782360 | Msa1277400 | 0.806057 | 9.894174e-50 | -8.615850e-47 |
| Msa0807110 | Msa1277400 | 0.805683 | 1.185859e-49 | -8.615850e-47 |
| Msa0816450 | Msa1277400 | 0.826299 | 2.928211e-54 | -8.615850e-47 |
| Msa0833040 | Msa1277400 | 0.808688 | 2.739534e-50 | -8.615850e-47 |
| Msa0130010 | Msa1277400 | 0.802592 | 5.214283e-49 | -8.615850e-47 |
| Msa0147560 | Msa1277400 | 0.807333 | 5.320087e-50 | -8.615850e-47 |
| Msa0156250 | Msa1277400 | 0.815553 | 8.714327e-52 | -8.615850e-47 |
| Msa0161680 | Msa1277400 | 0.807275 | 5.473601e-50 | -8.615850e-47 |
| Msa0212150 | Msa1277400 | 0.800631 | 1.316497e-48 | -8.615850e-47 |
| Msa0219190 | Msa1277400 | 0.827785 | 1.291621e-54 | -8.615850e-47 |
| Msa1228190 | Msa1277400 | 0.816351 | 5.784210e-52 | -8.615850e-47 |
| Msa1228610 | Msa1277400 | 0.800935 | 1.141143e-48 | -8.615850e-47 |
| Msa1277400 | Msa1294290 | 0.801522 | 8.655383e-49 | -8.615850e-47 |
| Msa1277400 | Msa1296800 | 0.817490 | 3.210003e-52 | -8.615850e-47 |
| Msa1277400 | Msa1305310 | 0.987566 | 1.007705e-170 | -8.615850e-47 |
| Msa1277400 | Msa1305510 | 0.805531 | 1.275987e-49 | -8.615850e-47 |
| Msa1277400 | Msa1307150 | 0.820150 | 7.983250e-53 | -8.615850e-47 |
| Msa1277400 | Msa1307190 | 0.930818 | 9.405279e-94 | -8.615850e-47 |
| Msa1277400 | Msa1356990 | 0.807432 | 5.070362e-50 | -8.615850e-47 |
| Msa1277400 | Msa1379970 | 0.814476 | 1.511041e-51 | -8.615850e-47 |
| Msa1277400 | Msa1406780 | 0.825427 | 4.714763e-54 | -8.615850e-47 |
| Msa1277400 | Msa1408870 | 0.805292 | 1.432620e-49 | -8.615850e-47 |
| Msa1277400 | Msa1414930 | 0.826355 | 2.838663e-54 | -8.615850e-47 |
| Msa1277400 | Msa1420060 | 0.843486 | 1.360621e-58 | -8.615850e-47 |
| Msa1277400 | Msa1421550 | 0.854226 | 1.417651e-61 | -8.615850e-47 |
| Msa1277400 | Msa1431850 | 0.824555 | 7.577287e-54 | -8.615850e-47 |
| Msa1277400 | Msa1437710 | 0.818501 | 1.896489e-52 | -8.615850e-47 |
| Msa0371540 | Msa1277400 | 0.805531 | 1.276276e-49 | -8.615850e-47 |
| Msa0406000 | Msa1277400 | 0.813412 | 2.593839e-51 | -8.615850e-47 |
| Msa0408630 | Msa1277400 | 0.809437 | 1.893491e-50 | -8.615850e-47 |
| Msa0408640 | Msa1277400 | 0.811446 | 6.971853e-51 | -8.615850e-47 |
| Msa0451400 | Msa1277400 | 0.832852 | 7.459775e-56 | -8.615850e-47 |
| Msa0464540 | Msa1277400 | 0.800042 | 1.734714e-48 | -8.615850e-47 |
| Msa0999300 | Msa1277400 | 0.812565 | 3.977262e-51 | -8.615850e-47 |
| Msa1014270 | Msa1277400 | 0.807348 | 5.281889e-50 | -8.615850e-47 |
| Msa1037770 | Msa1277400 | 0.804356 | 2.246916e-49 | -8.615850e-47 |
| Msa1037890 | Msa1277400 | 0.801571 | 8.457158e-49 | -8.615850e-47 |
| Msa1037900 | Msa1277400 | 0.829434 | 5.159281e-55 | -8.615850e-47 |
| Msa1037910 | Msa1277400 | 0.812988 | 3.213113e-51 | -8.615850e-47 |
| Msa1041530 | Msa1277400 | 0.830137 | 3.478627e-55 | -8.615850e-47 |
| Msa1070420 | Msa1277400 | 0.804361 | 2.241966e-49 | -8.615850e-47 |
| Msa1077180 | Msa1277400 | 0.803053 | 4.188250e-49 | -8.615850e-47 |
| Msa1081570 | Msa1277400 | 0.852874 | 3.466241e-61 | -8.615850e-47 |
| Msa0252770 | Msa1277400 | 0.814601 | 1.417659e-51 | -8.615850e-47 |
| Msa0298240 | Msa1277400 | 0.821690 | 3.530182e-53 | -8.615850e-47 |
| Msa0306120 | Msa1277400 | 0.824043 | 9.992033e-54 | -8.615850e-47 |
| Msa0329620 | Msa1277400 | 0.828674 | 7.885230e-55 | -8.615850e-47 |
| Msa0359250 | Msa1277400 | 0.830229 | 3.302480e-55 | -8.615850e-47 |
| Msa0361260 | Msa1277400 | 0.818067 | 2.377844e-52 | -8.615850e-47 |
| Msa1123880 | Msa1277400 | 0.831818 | 1.345185e-55 | -8.615850e-47 |
| Msa1127140 | Msa1277400 | 0.843113 | 1.711094e-58 | -8.615850e-47 |
| Msa1129960 | Msa1277400 | 0.820052 | 8.407020e-53 | -8.615850e-47 |
| Msa1129970 | Msa1277400 | 0.804392 | 2.208684e-49 | -8.615850e-47 |
| Msa1166400 | Msa1277400 | 0.832671 | 8.273259e-56 | -8.615850e-47 |
| Msa1176160 | Msa1277400 | 0.934831 | 2.193810e-96 | -8.615850e-47 |
| Msa1201160 | Msa1277400 | 0.813226 | 2.849894e-51 | -8.615850e-47 |
| Msa1214830 | Msa1277400 | 0.813166 | 2.936659e-51 | -8.615850e-47 |
| Msa0492190 | Msa1277400 | 0.802810 | 4.701457e-49 | -8.615850e-47 |
| Msa0537920 | Msa1277400 | 0.823283 | 1.505490e-53 | -8.615850e-47 |
| Msa0594090 | Msa1277400 | 0.816501 | 5.352740e-52 | -8.615850e-47 |
| Msa0856520 | Msa1277400 | 0.802939 | 4.422324e-49 | -8.615850e-47 |
| Msa0860280 | Msa1277400 | 0.818813 | 1.611482e-52 | -8.615850e-47 |
| Msa0867350 | Msa1277400 | 0.833005 | 6.837357e-56 | -8.615850e-47 |
| Msa0898730 | Msa1277400 | 0.828808 | 7.317102e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277400 | MtrunA17_Chr8g0346321 | 96.032 | 252 | 10 | 0 | 1 | 252 | 1 | 252 | 4.67e-163 | 451 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1277400 | AT2G46640.2 | 30.736 | 231 | 125 | 9 | 12 | 226 | 38 | 249 | 5.93e-15 | 73.2 |
| Msa1277400 | AT2G46640.1 | 30.736 | 231 | 125 | 9 | 12 | 226 | 26 | 237 | 6.32e-15 | 72.8 |
| Msa1277400 | AT2G46640.3 | 30.736 | 231 | 125 | 9 | 12 | 226 | 40 | 251 | 6.55e-15 | 73.2 |
| Msa1277400 | AT2G46640.4 | 30.736 | 231 | 125 | 9 | 12 | 226 | 40 | 251 | 8.66e-15 | 72.8 |
Find 60 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCACATGGTTCAATTCTT+TGG | 0.203507 | 8_3:-12666551 | None:intergenic |
| AGAAAGTTGGCAACCGAATT+TGG | 0.231188 | 8_3:-12663638 | None:intergenic |
| ATTCGGTTGCCAACTTTCTA+AGG | 0.265173 | 8_3:+12663642 | Msa1277400:five_prime_UTR |
| CTTCCAAAGCAAAGTATTCT+TGG | 0.268337 | 8_3:-12664195 | None:intergenic |
| CTTCGCTCCATTTGCAACTT+AGG | 0.315676 | 8_3:+12663918 | Msa1277400:five_prime_UTR |
| GTATTCTTGGTGATTGTTCA+TGG | 0.327683 | 8_3:-12664182 | None:intergenic |
| CATGGTGTGATTTACCTTCA+TGG | 0.334098 | 8_3:-12663673 | None:intergenic |
| AACCTTCACCACACCAAATT+CGG | 0.343239 | 8_3:+12663625 | Msa1277400:five_prime_UTR |
| ATGGGAGTGTCACTGTTATC+TGG | 0.356185 | 8_3:+12666463 | Msa1277400:three_prime_UTR |
| GAAGATTATTCCCCTTGTTA+AGG | 0.356621 | 8_3:+12664621 | Msa1277400:CDS |
| GTTTGTTACAGATCTTCAAT+TGG | 0.412010 | 8_3:+12663833 | Msa1277400:intron |
| TCACCAAGAATACTTTGCTT+TGG | 0.419615 | 8_3:+12664192 | Msa1277400:CDS |
| TATCTGTGAGACTATATATA+TGG | 0.426739 | 8_3:+12666638 | Msa1277400:three_prime_UTR |
| ATTCTTACCATTGGTACTCT+TGG | 0.429438 | 8_3:+12664142 | Msa1277400:CDS |
| GTTTAATTTCCTTAGAAAGT+TGG | 0.431940 | 8_3:-12663651 | None:intergenic |
| TGTGTTCATGTTGTTTCTGT+TGG | 0.432041 | 8_3:+12666584 | Msa1277400:three_prime_UTR |
| ACTTGACTCAACCAAGACTT+TGG | 0.432800 | 8_3:-12664554 | None:intergenic |
| TTTGTTACAGATCTTCAATT+GGG | 0.432814 | 8_3:+12663834 | Msa1277400:intron |
| ACTTTCTTGATGTCTTTCAT+TGG | 0.437252 | 8_3:-12664655 | None:intergenic |
| AATAATGATTAGAAACTTCA+AGG | 0.437546 | 8_3:+12664390 | Msa1277400:CDS |
| AAACCGTTGAGAGTGTTGTT+AGG | 0.437651 | 8_3:-12663874 | None:intergenic |
| ATGATTTCATGACAAATCAT+AGG | 0.438088 | 8_3:-12664430 | None:intergenic |
| TCAAATGTGTTGTTGATCAA+TGG | 0.438577 | 8_3:-12664295 | None:intergenic |
| TTTGGAACCTAAGTTGCAAA+TGG | 0.442908 | 8_3:-12663925 | None:intergenic |
| TTTCCAATCACCGAGCATAT+CGG | 0.445673 | 8_3:-12664113 | None:intergenic |
| TGACCGATATGCTCGGTGAT+TGG | 0.446300 | 8_3:+12664110 | Msa1277400:CDS |
| TGATTCTTGACATCAAGATC+TGG | 0.455218 | 8_3:-12665019 | None:intergenic |
| ATTTGATGAGAACAACTTTG+AGG | 0.478699 | 8_3:+12664312 | Msa1277400:CDS |
| TTATCAGTGTTGTTGATTGA+AGG | 0.480019 | 8_3:-12664061 | None:intergenic |
| ATTAATAACCACATGAATGA+AGG | 0.483710 | 8_3:+12665061 | Msa1277400:CDS |
| ACGTATGAGATTAAATACTT+AGG | 0.485233 | 8_3:+12666507 | Msa1277400:three_prime_UTR |
| TGATGAAGAAGATGCTAAAG+AGG | 0.486614 | 8_3:+12664987 | Msa1277400:CDS |
| TATGATTTGTCATGAAATCA+TGG | 0.489589 | 8_3:+12664432 | Msa1277400:CDS |
| TTGAATCTGATCAAAAGAAA+AGG | 0.490869 | 8_3:+12664467 | Msa1277400:CDS |
| TGATGATGATGCTAGAAAAG+AGG | 0.505541 | 8_3:+12664363 | Msa1277400:CDS |
| CTAAGGAAATTAAACCATGA+AGG | 0.509618 | 8_3:+12663659 | Msa1277400:five_prime_UTR |
| TTATTCTGCAGCCAAAGTCT+TGG | 0.511362 | 8_3:+12664543 | Msa1277400:CDS |
| TTTCTATGATGTTGAACAAG+AGG | 0.511917 | 8_3:+12664264 | Msa1277400:CDS |
| AGCCATTGCCTTCATTCATG+TGG | 0.516778 | 8_3:-12665069 | None:intergenic |
| TACTAGCTAGCGTTAAGCCA+TGG | 0.518868 | 8_3:+12666444 | Msa1277400:three_prime_UTR |
| TCTTCAATTGGGTGCACAAG+AGG | 0.532391 | 8_3:+12663845 | Msa1277400:five_prime_UTR |
| AAAGACGGAATTCTTACCAT+TGG | 0.543523 | 8_3:+12664133 | Msa1277400:CDS |
| AAACTTCAAGGAAATTGTTG+AGG | 0.544282 | 8_3:+12664402 | Msa1277400:CDS |
| CATCCTAACAACACTCTCAA+CGG | 0.551417 | 8_3:+12663871 | Msa1277400:five_prime_UTR |
| ACTAGCTAGCGTTAAGCCAT+GGG | 0.553704 | 8_3:+12666445 | Msa1277400:three_prime_UTR |
| AACCGAATTTGGTGTGGTGA+AGG | 0.554082 | 8_3:-12663627 | None:intergenic |
| CTTCAAGGAAATTGTTGAGG+TGG | 0.564269 | 8_3:+12664405 | Msa1277400:CDS |
| ATCATAGCCAAGAGTACCAA+TGG | 0.569824 | 8_3:-12664149 | None:intergenic |
| CATCATCATCAACTACATCA+TGG | 0.574853 | 8_3:-12664351 | None:intergenic |
| ATGCTCGGTGATTGGAAAGA+CGG | 0.581029 | 8_3:+12664118 | Msa1277400:CDS |
| TCTTGACATCAAGATCTGGA+TGG | 0.589109 | 8_3:-12665015 | None:intergenic |
| TGAATGAAGGCAATGGCTCA+AGG | 0.597220 | 8_3:+12665074 | Msa1277400:CDS |
| TGATTGTTCATGGATTTCAA+AGG | 0.604206 | 8_3:-12664172 | None:intergenic |
| AACCACATGAATGAAGGCAA+TGG | 0.612697 | 8_3:+12665067 | Msa1277400:CDS |
| AGATAACAGTGACACTCCCA+TGG | 0.629854 | 8_3:-12666461 | None:intergenic |
| GTTGCTTTGACCGATATGCT+CGG | 0.632441 | 8_3:+12664103 | Msa1277400:CDS |
| TCTTAACATCAGAATCAGCA+AGG | 0.653265 | 8_3:-12664510 | None:intergenic |
| GTTGGCAACCGAATTTGGTG+TGG | 0.690791 | 8_3:-12663633 | None:intergenic |
| ACACAAATTACAAAATCACA+TGG | 0.699258 | 8_3:-12666564 | None:intergenic |
| GATTTGTCATGAAATCATGG+AGG | 0.748556 | 8_3:+12664435 | Msa1277400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATAAATTTATTTTTGTT+TGG | - | chr8_3:12665989-12666008 | None:intergenic | 10.0% |
| !! | GAATTGAAAAAAATTAATTT+GGG | - | chr8_3:12666160-12666179 | None:intergenic | 10.0% |
| !! | TGAATTGAAAAAAATTAATT+TGG | - | chr8_3:12666161-12666180 | None:intergenic | 10.0% |
| !!! | AATTAATTTTTTTCAATTCA+TGG | + | chr8_3:12666161-12666180 | Msa1277400:intron | 10.0% |
| !!! | TATAAATTTTGTCAAAAAAA+GGG | - | chr8_3:12666313-12666332 | None:intergenic | 10.0% |
| !!! | ATCATATATTATGAAATTTT+TGG | + | chr8_3:12666387-12666406 | Msa1277400:intron | 10.0% |
| !!! | TCATATATTATGAAATTTTT+GGG | + | chr8_3:12666388-12666407 | Msa1277400:intron | 10.0% |
| !!! | TTTATTTTAGACACAAAATT+TGG | - | chr8_3:12663946-12663965 | None:intergenic | 15.0% |
| !! | TCAAGCAAATAATTAATTAT+TGG | - | chr8_3:12664927-12664946 | None:intergenic | 15.0% |
| !! | ATTATTTGCTTGAAATTAAT+TGG | + | chr8_3:12664934-12664953 | Msa1277400:intron | 15.0% |
| !!! | CTAAATAATCATTTGATTTT+AGG | + | chr8_3:12665349-12665368 | Msa1277400:intron | 15.0% |
| !!! | CTATAAATTTTGTCAAAAAA+AGG | - | chr8_3:12666314-12666333 | None:intergenic | 15.0% |
| !!! | CACAATTTTTAAGACAATAA+AGG | - | chr8_3:12663761-12663780 | None:intergenic | 20.0% |
| !! | AATAATGATTAGAAACTTCA+AGG | + | chr8_3:12664390-12664409 | Msa1277400:CDS | 20.0% |
| !! | TAATTACATATATAGCCTTT+AGG | - | chr8_3:12664707-12664726 | None:intergenic | 20.0% |
| !!! | ATTTATTTCCATTTTCACAA+TGG | + | chr8_3:12664811-12664830 | Msa1277400:intron | 20.0% |
| !! | ATATTATCATTTACTTGTGA+TGG | + | chr8_3:12665161-12665180 | Msa1277400:intron | 20.0% |
| !!! | TGTTTTTAAGATAAATGGAT+AGG | + | chr8_3:12665621-12665640 | Msa1277400:intron | 20.0% |
| !!! | AGTGTTGATTTTTTTTACAA+AGG | - | chr8_3:12665689-12665708 | None:intergenic | 20.0% |
| !! | AATAATACTAAGTGAATGTT+TGG | - | chr8_3:12666081-12666100 | None:intergenic | 20.0% |
| !!! | AAAAAATTAATTTGGGAAAC+AGG | - | chr8_3:12666153-12666172 | None:intergenic | 20.0% |
| !!! | TATGAAATTTTTGGGTTTTT+TGG | + | chr8_3:12666396-12666415 | Msa1277400:intron | 20.0% |
| !! | GTTTAATTTCCTTAGAAAGT+TGG | - | chr8_3:12663654-12663673 | None:intergenic | 25.0% |
| ! | CATATGCATGAGAAATATAA+TGG | - | chr8_3:12663713-12663732 | None:intergenic | 25.0% |
| ! | TTTGTTACAGATCTTCAATT+GGG | + | chr8_3:12663834-12663853 | Msa1277400:intron | 25.0% |
| !!! | GTTTGTTGTTTTTACTTAGA+TGG | + | chr8_3:12664010-12664029 | Msa1277400:intron | 25.0% |
| ! | ATGATTTCATGACAAATCAT+AGG | - | chr8_3:12664433-12664452 | None:intergenic | 25.0% |
| !! | TATGATTTGTCATGAAATCA+TGG | + | chr8_3:12664432-12664451 | Msa1277400:CDS | 25.0% |
| ! | TTGAATCTGATCAAAAGAAA+AGG | + | chr8_3:12664467-12664486 | Msa1277400:CDS | 25.0% |
| !!! | CCATTTTTTGCTTTAAGTTT+TGG | - | chr8_3:12664586-12664605 | None:intergenic | 25.0% |
| ! | CCAAAACTTAAAGCAAAAAA+TGG | + | chr8_3:12664583-12664602 | Msa1277400:CDS | 25.0% |
| ! | TTGCTTGAAATTAATTGGTT+AGG | + | chr8_3:12664939-12664958 | Msa1277400:intron | 25.0% |
| ! | ATTAATAACCACATGAATGA+AGG | + | chr8_3:12665061-12665080 | Msa1277400:CDS | 25.0% |
| ! | AAAAAGACAGTTCATGAAAA+GGG | - | chr8_3:12665140-12665159 | None:intergenic | 25.0% |
| ! | AAAAAAGACAGTTCATGAAA+AGG | - | chr8_3:12665141-12665160 | None:intergenic | 25.0% |
| ! | ATGCATGTCTCAAATTAATT+TGG | + | chr8_3:12665220-12665239 | Msa1277400:intron | 25.0% |
| ! | GTAAACTCTTAGATACTTTA+GGG | + | chr8_3:12665371-12665390 | Msa1277400:intron | 25.0% |
| !! | CTGTATCATTCCAATTTTAT+CGG | + | chr8_3:12665474-12665493 | Msa1277400:intron | 25.0% |
| ! | ATTAATTTATAGTCCTTTCG+AGG | - | chr8_3:12665504-12665523 | None:intergenic | 25.0% |
| ! | TTTATCTTAAAAACAGAAGG+AGG | - | chr8_3:12665616-12665635 | None:intergenic | 25.0% |
| ! | CCATTTATCTTAAAAACAGA+AGG | - | chr8_3:12665619-12665638 | None:intergenic | 25.0% |
| !!! | CCTTCTGTTTTTAAGATAAA+TGG | + | chr8_3:12665616-12665635 | Msa1277400:intron | 25.0% |
| ! | AAGATAAATGGATAGGTATA+TGG | + | chr8_3:12665628-12665647 | Msa1277400:intron | 25.0% |
| ! | TCTAAAAAAACACTCAAACT+GGG | + | chr8_3:12665721-12665740 | Msa1277400:intron | 25.0% |
| !! | CAAACATGATTTTATAGAGT+TGG | - | chr8_3:12665874-12665893 | None:intergenic | 25.0% |
| ! | TCAATATCACTTGAATAGAT+TGG | - | chr8_3:12666248-12666267 | None:intergenic | 25.0% |
| ! | ATCTATTCAAGTGATATTGA+TGG | + | chr8_3:12666248-12666267 | Msa1277400:intron | 25.0% |
| ! | ACGTATGAGATTAAATACTT+AGG | + | chr8_3:12666507-12666526 | Msa1277400:three_prime_UTR | 25.0% |
| ! | ACACAAATTACAAAATCACA+TGG | - | chr8_3:12666567-12666586 | None:intergenic | 25.0% |
| ! | TATCTGTGAGACTATATATA+TGG | + | chr8_3:12666638-12666657 | Msa1277400:three_prime_UTR | 25.0% |
| CTAAGGAAATTAAACCATGA+AGG | + | chr8_3:12663659-12663678 | Msa1277400:five_prime_UTR | 30.0% | |
| ! | GTTTGTTACAGATCTTCAAT+TGG | + | chr8_3:12663833-12663852 | Msa1277400:intron | 30.0% |
| ! | TTATCAGTGTTGTTGATTGA+AGG | - | chr8_3:12664064-12664083 | None:intergenic | 30.0% |
| TGATTGTTCATGGATTTCAA+AGG | - | chr8_3:12664175-12664194 | None:intergenic | 30.0% | |
| TTTCTATGATGTTGAACAAG+AGG | + | chr8_3:12664264-12664283 | Msa1277400:CDS | 30.0% | |
| ! | TCAAATGTGTTGTTGATCAA+TGG | - | chr8_3:12664298-12664317 | None:intergenic | 30.0% |
| ATTTGATGAGAACAACTTTG+AGG | + | chr8_3:12664312-12664331 | Msa1277400:CDS | 30.0% | |
| AAACTTCAAGGAAATTGTTG+AGG | + | chr8_3:12664402-12664421 | Msa1277400:CDS | 30.0% | |
| ACTTTCTTGATGTCTTTCAT+TGG | - | chr8_3:12664658-12664677 | None:intergenic | 30.0% | |
| ! | TATCATTTACTTGTGATGGA+AGG | + | chr8_3:12665165-12665184 | Msa1277400:intron | 30.0% |
| ! | ATGATAACCTTTTCAACCTA+AGG | - | chr8_3:12665285-12665304 | None:intergenic | 30.0% |
| GGTAAACTCTTAGATACTTT+AGG | + | chr8_3:12665370-12665389 | Msa1277400:intron | 30.0% | |
| CGATAAAATTGGAATGATAC+AGG | - | chr8_3:12665476-12665495 | None:intergenic | 30.0% | |
| TACATACACAATTAAACTCG+AGG | + | chr8_3:12665563-12665582 | Msa1277400:intron | 30.0% | |
| ACAGAAGGAGGATAAAATTA+AGG | - | chr8_3:12665604-12665623 | None:intergenic | 30.0% | |
| !!! | CAGTTTGAGTGTTTTTTTAG+AGG | - | chr8_3:12665722-12665741 | None:intergenic | 30.0% |
| ! | CTCTAAAAAAACACTCAAAC+TGG | + | chr8_3:12665720-12665739 | Msa1277400:intron | 30.0% |
| CCAAGAAAAAAGAGTTTAAG+AGG | - | chr8_3:12665748-12665767 | None:intergenic | 30.0% | |
| !!! | CCTCTTAAACTCTTTTTTCT+TGG | + | chr8_3:12665745-12665764 | Msa1277400:intron | 30.0% |
| TAACATCCTATCAATTAAGC+AGG | + | chr8_3:12665772-12665791 | Msa1277400:intron | 30.0% | |
| ATGTATCCTGCTTAATTGAT+AGG | - | chr8_3:12665781-12665800 | None:intergenic | 30.0% | |
| ! | TTATAGAGTTGGAATGCTTT+TGG | - | chr8_3:12665863-12665882 | None:intergenic | 30.0% |
| ! | TAATATGCCTCTTTTTGTAG+TGG | + | chr8_3:12666282-12666301 | Msa1277400:intron | 30.0% |
| !!! | GTTTTTTGGATTAACCTTTC+TGG | + | chr8_3:12666410-12666429 | Msa1277400:intron | 30.0% |
| AATCACATGGTTCAATTCTT+TGG | - | chr8_3:12666554-12666573 | None:intergenic | 30.0% | |
| ! | TTTGGAACCTAAGTTGCAAA+TGG | - | chr8_3:12663928-12663947 | None:intergenic | 35.0% |
| AAAGACGGAATTCTTACCAT+TGG | + | chr8_3:12664133-12664152 | Msa1277400:CDS | 35.0% | |
| ATTCTTACCATTGGTACTCT+TGG | + | chr8_3:12664142-12664161 | Msa1277400:CDS | 35.0% | |
| ! | GTATTCTTGGTGATTGTTCA+TGG | - | chr8_3:12664185-12664204 | None:intergenic | 35.0% |
| TCACCAAGAATACTTTGCTT+TGG | + | chr8_3:12664192-12664211 | Msa1277400:CDS | 35.0% | |
| ! | CTTCCAAAGCAAAGTATTCT+TGG | - | chr8_3:12664198-12664217 | None:intergenic | 35.0% |
| CATCATCATCAACTACATCA+TGG | - | chr8_3:12664354-12664373 | None:intergenic | 35.0% | |
| ! | TGATGATGATGCTAGAAAAG+AGG | + | chr8_3:12664363-12664382 | Msa1277400:CDS | 35.0% |
| GATTTGTCATGAAATCATGG+AGG | + | chr8_3:12664435-12664454 | Msa1277400:CDS | 35.0% | |
| TCTTAACATCAGAATCAGCA+AGG | - | chr8_3:12664513-12664532 | None:intergenic | 35.0% | |
| GAAGATTATTCCCCTTGTTA+AGG | + | chr8_3:12664621-12664640 | Msa1277400:CDS | 35.0% | |
| ! | ACGTGCATTTTCCTTAACAA+GGG | - | chr8_3:12664635-12664654 | None:intergenic | 35.0% |
| CATTGACACCATTGTGAAAA+TGG | - | chr8_3:12664822-12664841 | None:intergenic | 35.0% | |
| TTGTAGATAGGATAGTGTTG+AGG | + | chr8_3:12664901-12664920 | Msa1277400:intron | 35.0% | |
| TGATGAAGAAGATGCTAAAG+AGG | + | chr8_3:12664987-12665006 | Msa1277400:CDS | 35.0% | |
| TGATTCTTGACATCAAGATC+TGG | - | chr8_3:12665022-12665041 | None:intergenic | 35.0% | |
| ! | AGGTCTTTTATCGCAGTTTA+AGG | + | chr8_3:12665094-12665113 | Msa1277400:CDS | 35.0% |
| ACATGACAAACACATACCTT+AGG | + | chr8_3:12665266-12665285 | Msa1277400:intron | 35.0% | |
| !! | ACACATACCTTAGGTTGAAA+AGG | + | chr8_3:12665275-12665294 | Msa1277400:intron | 35.0% |
| !! | ACTTTAGGGTTTAGTCGTAT+CGG | + | chr8_3:12665385-12665404 | Msa1277400:intron | 35.0% |
| ATGGATAGGTATATGGATGA+TGG | + | chr8_3:12665635-12665654 | Msa1277400:intron | 35.0% | |
| TTTCAGTGAAGATAGATGCA+GGG | + | chr8_3:12666119-12666138 | Msa1277400:intron | 35.0% | |
| ATGTTTCAGGGTAATTCTGT+GGG | - | chr8_3:12666193-12666212 | None:intergenic | 35.0% | |
| ! | CTCTTTGTTTGGATGTTTCA+GGG | - | chr8_3:12666205-12666224 | None:intergenic | 35.0% |
| GCTATATGAACCTCTTTGTT+TGG | - | chr8_3:12666216-12666235 | None:intergenic | 35.0% | |
| GGTTTAACCACTACAAAAAG+AGG | - | chr8_3:12666292-12666311 | None:intergenic | 35.0% | |
| !! | TGTGTTCATGTTGTTTCTGT+TGG | + | chr8_3:12666584-12666603 | Msa1277400:three_prime_UTR | 35.0% |
| AACCTTCACCACACCAAATT+CGG | + | chr8_3:12663625-12663644 | Msa1277400:five_prime_UTR | 40.0% | |
| AGAAAGTTGGCAACCGAATT+TGG | - | chr8_3:12663641-12663660 | None:intergenic | 40.0% | |
| ATTCGGTTGCCAACTTTCTA+AGG | + | chr8_3:12663642-12663661 | Msa1277400:five_prime_UTR | 40.0% | |
| CATGGTGTGATTTACCTTCA+TGG | - | chr8_3:12663676-12663695 | None:intergenic | 40.0% | |
| CATCCTAACAACACTCTCAA+CGG | + | chr8_3:12663871-12663890 | Msa1277400:five_prime_UTR | 40.0% | |
| !! | AAACCGTTGAGAGTGTTGTT+AGG | - | chr8_3:12663877-12663896 | None:intergenic | 40.0% |
| TTTCCAATCACCGAGCATAT+CGG | - | chr8_3:12664116-12664135 | None:intergenic | 40.0% | |
| !! | ATCATAGCCAAGAGTACCAA+TGG | - | chr8_3:12664152-12664171 | None:intergenic | 40.0% |
| CTTCAAGGAAATTGTTGAGG+TGG | + | chr8_3:12664405-12664424 | Msa1277400:CDS | 40.0% | |
| TTATTCTGCAGCCAAAGTCT+TGG | + | chr8_3:12664543-12664562 | Msa1277400:CDS | 40.0% | |
| ACTTGACTCAACCAAGACTT+TGG | - | chr8_3:12664557-12664576 | None:intergenic | 40.0% | |
| ! | CGTGCATTTTCCTTAACAAG+GGG | - | chr8_3:12664634-12664653 | None:intergenic | 40.0% |
| ! | GACGTGCATTTTCCTTAACA+AGG | - | chr8_3:12664636-12664655 | None:intergenic | 40.0% |
| CTACATCATGCACTTCCTAA+AGG | + | chr8_3:12664689-12664708 | Msa1277400:intron | 40.0% | |
| ATCTACAAAAGAGTCCTCAC+TGG | - | chr8_3:12664889-12664908 | None:intergenic | 40.0% | |
| ! | GTGAGGACTCTTTTGTAGAT+AGG | + | chr8_3:12664889-12664908 | Msa1277400:intron | 40.0% |
| TCTTGACATCAAGATCTGGA+TGG | - | chr8_3:12665018-12665037 | None:intergenic | 40.0% | |
| AACCACATGAATGAAGGCAA+TGG | + | chr8_3:12665067-12665086 | Msa1277400:CDS | 40.0% | |
| ! | TACTTGTGATGGAAGGTTTG+TGG | + | chr8_3:12665172-12665191 | Msa1277400:intron | 40.0% |
| TCGAGGACATCCGATAAAAT+TGG | - | chr8_3:12665487-12665506 | None:intergenic | 40.0% | |
| ! | TTTTATCGGATGTCCTCGAA+AGG | + | chr8_3:12665488-12665507 | Msa1277400:intron | 40.0% |
| CTTTCAGTGAAGATAGATGC+AGG | + | chr8_3:12666118-12666137 | Msa1277400:intron | 40.0% | |
| GATGTTTCAGGGTAATTCTG+TGG | - | chr8_3:12666194-12666213 | None:intergenic | 40.0% | |
| ! | CCTCTTTGTTTGGATGTTTC+AGG | - | chr8_3:12666206-12666225 | None:intergenic | 40.0% |
| CCTGAAACATCCAAACAAAG+AGG | + | chr8_3:12666203-12666222 | Msa1277400:intron | 40.0% | |
| !! | TAACCTTTCTGGTTTGTTGC+AGG | + | chr8_3:12666421-12666440 | Msa1277400:intron | 40.0% |
| !! | AACCGAATTTGGTGTGGTGA+AGG | - | chr8_3:12663630-12663649 | None:intergenic | 45.0% |
| TCTTCAATTGGGTGCACAAG+AGG | + | chr8_3:12663845-12663864 | Msa1277400:five_prime_UTR | 45.0% | |
| CTTCGCTCCATTTGCAACTT+AGG | + | chr8_3:12663918-12663937 | Msa1277400:five_prime_UTR | 45.0% | |
| ! | GTTGCTTTGACCGATATGCT+CGG | + | chr8_3:12664103-12664122 | Msa1277400:CDS | 45.0% |
| ! | ATGCTCGGTGATTGGAAAGA+CGG | + | chr8_3:12664118-12664137 | Msa1277400:CDS | 45.0% |
| GCTTCATAGTTTGACCAGTG+AGG | + | chr8_3:12664872-12664891 | Msa1277400:intron | 45.0% | |
| AGCCATTGCCTTCATTCATG+TGG | - | chr8_3:12665072-12665091 | None:intergenic | 45.0% | |
| TGAATGAAGGCAATGGCTCA+AGG | + | chr8_3:12665074-12665093 | Msa1277400:CDS | 45.0% | |
| TCAGGGTAATTCTGTGGGAT+GGG | - | chr8_3:12666188-12666207 | None:intergenic | 45.0% | |
| TTCAGGGTAATTCTGTGGGA+TGG | - | chr8_3:12666189-12666208 | None:intergenic | 45.0% | |
| GTACCTGCAACAAACCAGAA+AGG | - | chr8_3:12666427-12666446 | None:intergenic | 45.0% | |
| TACTAGCTAGCGTTAAGCCA+TGG | + | chr8_3:12666444-12666463 | Msa1277400:three_prime_UTR | 45.0% | |
| ACTAGCTAGCGTTAAGCCAT+GGG | + | chr8_3:12666445-12666464 | Msa1277400:three_prime_UTR | 45.0% | |
| AGATAACAGTGACACTCCCA+TGG | - | chr8_3:12666464-12666483 | None:intergenic | 45.0% | |
| !! | ATGGGAGTGTCACTGTTATC+TGG | + | chr8_3:12666463-12666482 | Msa1277400:three_prime_UTR | 45.0% |
| !! | AAAATTAATTAATAGAAAAA+TGG | - | chr8_3:12665897-12665916 | None:intergenic | 5.0% |
| ! | GTTGGCAACCGAATTTGGTG+TGG | - | chr8_3:12663636-12663655 | None:intergenic | 50.0% |
| ATGGCTGTGTTGTGTGTGCA+TGG | - | chr8_3:12663694-12663713 | None:intergenic | 50.0% | |
| ! | TGACCGATATGCTCGGTGAT+TGG | + | chr8_3:12664110-12664129 | Msa1277400:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 12663609 | 12666701 | 12663609 | ID=Msa1277400;Name=Msa1277400 |
| chr8_3 | mRNA | 12663609 | 12666701 | 12663609 | ID=Msa1277400-mRNA-1;Parent=Msa1277400;Name=Msa1277400-mRNA-1;_AED=0.12;_eAED=0.12;_QI=185|1|1|1|0.5|0.2|5|260|252 |
| chr8_3 | exon | 12663609 | 12663680 | 12663609 | ID=Msa1277400-mRNA-1:exon:5102;Parent=Msa1277400-mRNA-1 |
| chr8_3 | exon | 12663844 | 12663939 | 12663844 | ID=Msa1277400-mRNA-1:exon:5103;Parent=Msa1277400-mRNA-1 |
| chr8_3 | exon | 12664029 | 12664675 | 12664029 | ID=Msa1277400-mRNA-1:exon:5104;Parent=Msa1277400-mRNA-1 |
| chr8_3 | exon | 12664986 | 12665115 | 12664986 | ID=Msa1277400-mRNA-1:exon:5105;Parent=Msa1277400-mRNA-1 |
| chr8_3 | exon | 12666443 | 12666701 | 12666443 | ID=Msa1277400-mRNA-1:exon:5106;Parent=Msa1277400-mRNA-1 |
| chr8_3 | five_prime_UTR | 12663609 | 12663680 | 12663609 | ID=Msa1277400-mRNA-1:five_prime_utr;Parent=Msa1277400-mRNA-1 |
| chr8_3 | five_prime_UTR | 12663844 | 12663939 | 12663844 | ID=Msa1277400-mRNA-1:five_prime_utr;Parent=Msa1277400-mRNA-1 |
| chr8_3 | five_prime_UTR | 12664029 | 12664045 | 12664029 | ID=Msa1277400-mRNA-1:five_prime_utr;Parent=Msa1277400-mRNA-1 |
| chr8_3 | CDS | 12664046 | 12664675 | 12664046 | ID=Msa1277400-mRNA-1:cds;Parent=Msa1277400-mRNA-1 |
| chr8_3 | CDS | 12664986 | 12665114 | 12664986 | ID=Msa1277400-mRNA-1:cds;Parent=Msa1277400-mRNA-1 |
| chr8_3 | three_prime_UTR | 12665115 | 12665115 | 12665115 | ID=Msa1277400-mRNA-1:three_prime_utr;Parent=Msa1277400-mRNA-1 |
| chr8_3 | three_prime_UTR | 12666443 | 12666701 | 12666443 | ID=Msa1277400-mRNA-1:three_prime_utr;Parent=Msa1277400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
