Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330550 | XP_013457813.1 | 96.405 | 306 | 9 | 1 | 1 | 306 | 1 | 304 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330550 | sp|Q9FJJ3|SRO5_ARATH | 41.975 | 243 | 122 | 6 | 68 | 301 | 70 | 302 | 2.71e-53 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330550 | A0A072UPT7 | 96.405 | 306 | 9 | 1 | 1 | 306 | 1 | 304 | 0.0 | 608 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010800 | Msa1330550 | 0.820485 | 6.692342e-53 | -8.615850e-47 |
| Msa0017320 | Msa1330550 | 0.802641 | 5.095091e-49 | -8.615850e-47 |
| Msa0074750 | Msa1330550 | 0.805212 | 1.488370e-49 | -8.615850e-47 |
| Msa0081940 | Msa1330550 | 0.812414 | 4.291894e-51 | -8.615850e-47 |
| Msa0082050 | Msa1330550 | 0.804647 | 1.954327e-49 | -8.615850e-47 |
| Msa0658680 | Msa1330550 | 0.815425 | 9.304949e-52 | -8.615850e-47 |
| Msa0789560 | Msa1330550 | 0.805849 | 1.094333e-49 | -8.615850e-47 |
| Msa0128430 | Msa1330550 | 0.807037 | 6.146832e-50 | -8.615850e-47 |
| Msa0137510 | Msa1330550 | 0.801619 | 8.265797e-49 | -8.615850e-47 |
| Msa0138210 | Msa1330550 | 0.813152 | 2.957857e-51 | -8.615850e-47 |
| Msa0171980 | Msa1330550 | 0.810013 | 1.423133e-50 | -8.615850e-47 |
| Msa0183420 | Msa1330550 | 0.802498 | 5.451943e-49 | -8.615850e-47 |
| Msa0210260 | Msa1330550 | 0.809468 | 1.864231e-50 | -8.615850e-47 |
| Msa1234620 | Msa1330550 | 0.807273 | 5.478961e-50 | -8.615850e-47 |
| Msa1330550 | Msa1336040 | 0.833257 | 5.917781e-56 | -8.615850e-47 |
| Msa1330550 | Msa1339320 | 0.814323 | 1.633206e-51 | -8.615850e-47 |
| Msa1330550 | Msa1360020 | 0.806400 | 8.378770e-50 | -8.615850e-47 |
| Msa1330550 | Msa1391720 | 0.824478 | 7.897206e-54 | -8.615850e-47 |
| Msa1330550 | Msa1437330 | 0.820112 | 8.147694e-53 | -8.615850e-47 |
| Msa0376420 | Msa1330550 | 0.801013 | 1.099833e-48 | -8.615850e-47 |
| Msa0403490 | Msa1330550 | 0.898697 | 4.115938e-77 | -8.615850e-47 |
| Msa1036740 | Msa1330550 | 0.817139 | 3.849230e-52 | -8.615850e-47 |
| Msa0244970 | Msa1330550 | 0.820946 | 5.243697e-53 | -8.615850e-47 |
| Msa0262700 | Msa1330550 | 0.810142 | 1.335519e-50 | -8.615850e-47 |
| Msa0280110 | Msa1330550 | 0.826376 | 2.806157e-54 | -8.615850e-47 |
| Msa0308440 | Msa1330550 | 0.814388 | 1.580716e-51 | -8.615850e-47 |
| Msa0319290 | Msa1330550 | 0.813720 | 2.218831e-51 | -8.615850e-47 |
| Msa1122780 | Msa1330550 | 0.800008 | 1.762593e-48 | -8.615850e-47 |
| Msa1127430 | Msa1330550 | 0.831757 | 1.393134e-55 | -8.615850e-47 |
| Msa1163870 | Msa1330550 | 0.803506 | 3.374942e-49 | -8.615850e-47 |
| Msa1201640 | Msa1330550 | 0.800239 | 1.582283e-48 | -8.615850e-47 |
| Msa1209190 | Msa1330550 | 0.907883 | 3.128293e-81 | -8.615850e-47 |
| Msa1209860 | Msa1330550 | 0.858689 | 6.933538e-63 | -8.615850e-47 |
| Msa1214170 | Msa1330550 | 0.803037 | 4.219577e-49 | -8.615850e-47 |
| Msa0500400 | Msa1330550 | 0.800906 | 1.156960e-48 | -8.615850e-47 |
| Msa0511150 | Msa1330550 | 0.800471 | 1.419379e-48 | -8.615850e-47 |
| Msa0514610 | Msa1330550 | 0.808794 | 2.599285e-50 | -8.615850e-47 |
| Msa0569780 | Msa1330550 | 0.812993 | 3.204587e-51 | -8.615850e-47 |
| Msa0583670 | Msa1330550 | 0.801391 | 9.206575e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330550 | MtrunA17_Chr4g0059061 | 96.405 | 306 | 9 | 1 | 1 | 306 | 1 | 304 | 0.0 | 608 |
| Msa1330550 | MtrunA17_Chr3g0117631 | 48.852 | 305 | 139 | 5 | 13 | 306 | 15 | 313 | 1.12e-96 | 290 |
| Msa1330550 | MtrunA17_Chr8g0380321 | 37.594 | 266 | 152 | 6 | 43 | 299 | 19 | 279 | 4.34e-53 | 176 |
| Msa1330550 | MtrunA17_Chr1g0210871 | 32.063 | 315 | 156 | 10 | 46 | 320 | 273 | 569 | 5.82e-41 | 150 |
| Msa1330550 | MtrunA17_Chr5g0412301 | 31.229 | 301 | 159 | 9 | 46 | 305 | 266 | 559 | 4.57e-36 | 137 |
| Msa1330550 | MtrunA17_Chr5g0410781 | 35.294 | 187 | 106 | 6 | 43 | 220 | 59 | 239 | 5.11e-30 | 115 |
| Msa1330550 | MtrunA17_Chr7g0217951 | 34.946 | 186 | 102 | 7 | 46 | 220 | 249 | 426 | 3.98e-26 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1330550 | AT5G62520.1 | 41.975 | 243 | 122 | 6 | 68 | 301 | 70 | 302 | 2.76e-54 | 181 |
| Msa1330550 | AT1G23550.1 | 37.407 | 270 | 150 | 5 | 48 | 305 | 56 | 318 | 9.44e-54 | 179 |
| Msa1330550 | AT3G47720.1 | 40.891 | 247 | 124 | 6 | 68 | 305 | 78 | 311 | 2.14e-51 | 173 |
| Msa1330550 | AT1G70440.2 | 31.908 | 304 | 174 | 9 | 15 | 303 | 19 | 304 | 2.15e-44 | 155 |
| Msa1330550 | AT1G70440.1 | 31.908 | 304 | 174 | 9 | 15 | 303 | 19 | 304 | 2.15e-44 | 155 |
| Msa1330550 | AT1G32230.1 | 30.702 | 342 | 179 | 10 | 11 | 303 | 235 | 567 | 2.00e-39 | 147 |
| Msa1330550 | AT1G32230.3 | 30.205 | 341 | 181 | 9 | 11 | 303 | 235 | 566 | 5.98e-39 | 145 |
| Msa1330550 | AT1G32230.6 | 30.205 | 341 | 181 | 9 | 11 | 303 | 235 | 566 | 1.04e-38 | 145 |
| Msa1330550 | AT1G32230.4 | 30.205 | 341 | 181 | 9 | 11 | 303 | 235 | 566 | 1.04e-38 | 145 |
| Msa1330550 | AT1G32230.2 | 30.205 | 341 | 181 | 9 | 11 | 303 | 235 | 566 | 1.04e-38 | 145 |
| Msa1330550 | AT1G32230.5 | 30.205 | 341 | 181 | 9 | 11 | 303 | 235 | 566 | 1.04e-38 | 145 |
| Msa1330550 | AT5G62520.2 | 41.975 | 162 | 82 | 5 | 68 | 220 | 70 | 228 | 1.02e-32 | 122 |
| Msa1330550 | AT2G35510.1 | 27.476 | 313 | 178 | 9 | 38 | 307 | 262 | 568 | 8.68e-29 | 117 |
| Msa1330550 | AT2G35510.3 | 27.476 | 313 | 178 | 9 | 38 | 307 | 262 | 568 | 8.68e-29 | 117 |
| Msa1330550 | AT2G35510.2 | 30.526 | 190 | 121 | 5 | 38 | 222 | 262 | 445 | 1.40e-23 | 101 |
Find 84 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGGAATCCATAGCCCTTT+TGG | 0.255696 | 8_4:+49735965 | None:intergenic |
| TTGAAACTCATAACATATTC+AGG | 0.280626 | 8_4:+49739077 | None:intergenic |
| GATATTATTCAACACGGTTT+TGG | 0.293672 | 8_4:-49739521 | Msa1330550:CDS |
| ACTCCAAACAATGAACTCTT+TGG | 0.300883 | 8_4:+49739124 | None:intergenic |
| AAACGAATCTGCTTCGGATT+AGG | 0.308031 | 8_4:+49739732 | None:intergenic |
| TCGTGTGATCATGGGAAAAT+TGG | 0.321394 | 8_4:-49739225 | Msa1330550:CDS |
| CCAAGTTTCACAAGGAGTAT+AGG | 0.324583 | 8_4:-49738826 | Msa1330550:CDS |
| CTCCCAAAGAGTTCATTGTT+TGG | 0.353473 | 8_4:-49739127 | Msa1330550:CDS |
| AGAGTCGGGAATTGCATAAA+AGG | 0.360107 | 8_4:+49738899 | None:intergenic |
| CAAGTTTCACAAGGAGTATA+GGG | 0.369249 | 8_4:-49738825 | Msa1330550:intron |
| CCTATACTCCTTGTGAAACT+TGG | 0.373522 | 8_4:+49738826 | None:intergenic |
| AGTTCAGAAGAATATGATTC+TGG | 0.386842 | 8_4:-49739167 | Msa1330550:CDS |
| TTGAGTAGCAAGAAAGTTGA+TGG | 0.394627 | 8_4:-49736020 | Msa1330550:CDS |
| CAAGTACACACTACCTTTGT+CGG | 0.405137 | 8_4:+49739046 | None:intergenic |
| CTCCAAACAATGAACTCTTT+GGG | 0.417033 | 8_4:+49739125 | None:intergenic |
| TCGTCTTCCGAACTATCCTT+CGG | 0.427547 | 8_4:+49739774 | None:intergenic |
| CTTTCAAGTGGAGAATCGTT+TGG | 0.428078 | 8_4:+49739467 | None:intergenic |
| TGTTTCGGTAAATTGTAGAT+TGG | 0.431614 | 8_4:+49739866 | None:intergenic |
| TTTGTAGGACATGAGAAGGT+TGG | 0.436670 | 8_4:-49738953 | Msa1330550:intron |
| TAATCATTGCATTCGACTCA+TGG | 0.437955 | 8_4:+49735947 | None:intergenic |
| AACCACAAACGAATCTGCTT+CGG | 0.446185 | 8_4:+49739726 | None:intergenic |
| TCGCCGGCGGAATCATGTTT+CGG | 0.448520 | 8_4:+49739851 | None:intergenic |
| CGTCTTCCGAACTATCCTTC+GGG | 0.448830 | 8_4:+49739775 | None:intergenic |
| TTTGGTTATGTTCATAGCAA+TGG | 0.454047 | 8_4:-49739503 | Msa1330550:CDS |
| CTGAAAATCGCTACTCCATA+GGG | 0.455210 | 8_4:+49739683 | None:intergenic |
| GTGTAGAGGGGTGGCAAGAT+TGG | 0.457360 | 8_4:-49736062 | Msa1330550:intron |
| GTTGCTTTGTCGTGTGATCA+TGG | 0.459584 | 8_4:-49739234 | Msa1330550:CDS |
| CCTGAAAATCGCTACTCCAT+AGG | 0.467324 | 8_4:+49739682 | None:intergenic |
| CATGAGAAGGTTGGAGTTGG+AGG | 0.468737 | 8_4:-49738944 | Msa1330550:CDS |
| TTTCAGGAATCCTTGTAAAA+CGG | 0.475306 | 8_4:-49739666 | Msa1330550:CDS |
| ATCCGAAGCAGATTCGTTTG+TGG | 0.477453 | 8_4:-49739728 | Msa1330550:CDS |
| GGACATGAGAAGGTTGGAGT+TGG | 0.482722 | 8_4:-49738947 | Msa1330550:CDS |
| AAATTGGAGGCTGTGCCTGC+AGG | 0.495226 | 8_4:-49739209 | Msa1330550:CDS |
| ACGATTCCCGAAGGATAGTT+CGG | 0.498656 | 8_4:-49739781 | Msa1330550:CDS |
| ATCAAGAGTAAGACCCAAAA+GGG | 0.501995 | 8_4:-49735979 | Msa1330550:CDS |
| CATCAAGAGTAAGACCCAAA+AGG | 0.503977 | 8_4:-49735980 | Msa1330550:CDS |
| GGATGCGACACTCTCGCAAT+CGG | 0.504460 | 8_4:+49739811 | None:intergenic |
| AGTAAGACCCAAAAGGGCTA+TGG | 0.516837 | 8_4:-49735973 | Msa1330550:CDS |
| GCGCAAGGGTTGAAACCCTA+TGG | 0.518787 | 8_4:-49739698 | Msa1330550:CDS |
| GAATCCTTGTAAAACGGTAA+TGG | 0.521351 | 8_4:-49739660 | Msa1330550:CDS |
| CCTTCGGGAATCGTGGCCGC+CGG | 0.528283 | 8_4:+49739790 | None:intergenic |
| TAGAGGGGTGGCAAGATTGG+CGG | 0.529568 | 8_4:-49736059 | Msa1330550:CDS |
| TATCAAATCTTTCAGAGCAA+AGG | 0.540517 | 8_4:-49738627 | Msa1330550:intron |
| AATTGCATAAAAGGCGAAGA+TGG | 0.540655 | 8_4:+49738908 | None:intergenic |
| CTCCTTGTGAAACTTGGCAA+TGG | 0.542921 | 8_4:+49738832 | None:intergenic |
| CAAACGATTCTCCACTTGAA+AGG | 0.543450 | 8_4:-49739466 | Msa1330550:CDS |
| TTGCTTTGTCGTGTGATCAT+GGG | 0.546121 | 8_4:-49739233 | Msa1330550:CDS |
| GATTGCGAGAGTGTCGCATC+CGG | 0.547181 | 8_4:-49739809 | Msa1330550:CDS |
| AGAACTGTTGTTGACGAACA+AGG | 0.547451 | 8_4:-49739269 | Msa1330550:CDS |
| AAAGCGCAGAAATCAGAGTC+GGG | 0.547882 | 8_4:+49738885 | None:intergenic |
| ATTAACTCGTGCCTTTCAAG+TGG | 0.549624 | 8_4:+49739455 | None:intergenic |
| TTCAAACTTGCTTCCGACAA+AGG | 0.552001 | 8_4:-49739059 | Msa1330550:intron |
| GTTTGTGGTTTAAGTGCGCA+AGG | 0.554303 | 8_4:-49739713 | Msa1330550:CDS |
| GCAAGATTGGCGGCGTGAAG+AGG | 0.556892 | 8_4:-49736049 | Msa1330550:CDS |
| AATCGCTGATTCATCTTCGC+CGG | 0.558062 | 8_4:+49739835 | None:intergenic |
| GCAATGGAAACAATATCAGA+TGG | 0.571537 | 8_4:+49738848 | None:intergenic |
| GAATCATATTCTTCTGAACT+CGG | 0.573273 | 8_4:+49739170 | None:intergenic |
| CTGCGTTGATCAGAACCTGC+AGG | 0.581877 | 8_4:+49739194 | None:intergenic |
| CGCTGATTCATCTTCGCCGG+CGG | 0.587670 | 8_4:+49739838 | None:intergenic |
| TGTGATCATGGGAAAATTGG+AGG | 0.591354 | 8_4:-49739222 | Msa1330550:CDS |
| CGGTGGCTAAAATGCGCGGT+GGG | 0.591716 | 8_4:-49739598 | Msa1330550:CDS |
| TGCGAGAGTGTCGCATCCGG+CGG | 0.593829 | 8_4:-49739806 | Msa1330550:CDS |
| AGATTGGCGGCGTGAAGAGG+AGG | 0.595685 | 8_4:-49736046 | Msa1330550:CDS |
| TTCCATTGCCAAGTTTCACA+AGG | 0.602302 | 8_4:-49738834 | Msa1330550:CDS |
| TTTGTGGTTTAAGTGCGCAA+GGG | 0.604517 | 8_4:-49739712 | Msa1330550:CDS |
| ATGAGAAGGTTGGAGTTGGA+GGG | 0.604737 | 8_4:-49738943 | Msa1330550:CDS |
| TTACCGAAACATGATTCCGC+CGG | 0.606830 | 8_4:-49739854 | Msa1330550:CDS |
| TGAGATCTTCGCACGTGCGG+TGG | 0.607606 | 8_4:-49739615 | Msa1330550:CDS |
| CCGGCGGCCACGATTCCCGA+AGG | 0.617069 | 8_4:-49739790 | Msa1330550:CDS |
| ATAGTTCGGAAGACGACGGA+GGG | 0.618356 | 8_4:-49739767 | Msa1330550:CDS |
| CGTGCGGTGGCTAAAATGCG+CGG | 0.622389 | 8_4:-49739602 | Msa1330550:CDS |
| GAAAGCGCAGAAATCAGAGT+CGG | 0.626070 | 8_4:+49738884 | None:intergenic |
| GAACTATCCTTCGGGAATCG+TGG | 0.630182 | 8_4:+49739783 | None:intergenic |
| GATAGTTCGGAAGACGACGG+AGG | 0.630672 | 8_4:-49739768 | Msa1330550:CDS |
| AATGTGAAACACGTGTGGTA+CGG | 0.653048 | 8_4:-49739569 | Msa1330550:CDS |
| GTTTGAGATCTTCGCACGTG+CGG | 0.658246 | 8_4:-49739618 | Msa1330550:CDS |
| AAACGGTAATGGCACAAGCG+AGG | 0.659734 | 8_4:-49739649 | Msa1330550:CDS |
| GCGGTGGCTAAAATGCGCGG+TGG | 0.662286 | 8_4:-49739599 | Msa1330550:CDS |
| AGAAGAATATGATTCTGGAG+TGG | 0.669225 | 8_4:-49739162 | Msa1330550:CDS |
| ATGGAAACAATATCAGATGG+AGG | 0.669944 | 8_4:+49738851 | None:intergenic |
| ATTGTTGATATTATTCAACA+CGG | 0.694317 | 8_4:-49739527 | Msa1330550:CDS |
| GTTGAAACTGTGTAGAGGGG+TGG | 0.704912 | 8_4:-49736071 | Msa1330550:intron |
| AAGGATAGTTCGGAAGACGA+CGG | 0.711418 | 8_4:-49739771 | Msa1330550:CDS |
| ATGCTAATGTGAAACACGTG+TGG | 0.770185 | 8_4:-49739574 | Msa1330550:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATGCTAAATAAAATTT+TGG | - | chr8_4:49737327-49737346 | Msa1330550:intron | 10.0% |
| !!! | ATAATGCTAAATAAAATTTT+GGG | - | chr8_4:49737328-49737347 | Msa1330550:intron | 10.0% |
| !! | AATTGAAATAAAAAACAAAA+GGG | + | chr8_4:49737667-49737686 | None:intergenic | 10.0% |
| !! | AAATTGAAATAAAAAACAAA+AGG | + | chr8_4:49737668-49737687 | None:intergenic | 10.0% |
| !!! | ATTTCAATTTTTCAATTAAA+TGG | - | chr8_4:49737678-49737697 | Msa1330550:intron | 10.0% |
| !! | ATTGTATTAACTTTACTTAA+TGG | - | chr8_4:49736428-49736447 | Msa1330550:intron | 15.0% |
| !!! | TTTCAGATTTATTTTTTGTT+TGG | - | chr8_4:49736848-49736867 | Msa1330550:intron | 15.0% |
| !! | TTACATTTCAATAGAATTTA+GGG | + | chr8_4:49737370-49737389 | None:intergenic | 15.0% |
| !!! | TCTAATTTTCTCAAATATTT+AGG | - | chr8_4:49737630-49737649 | Msa1330550:intron | 15.0% |
| !! | ATTGAAATAAAAAACAAAAG+GGG | + | chr8_4:49737666-49737685 | None:intergenic | 15.0% |
| !! | TTATTCTTTCTAATCTAATT+AGG | - | chr8_4:49739058-49739077 | Msa1330550:intron | 15.0% |
| !! | TTTCTTTAGTATTTATTGTA+TGG | + | chr8_4:49739162-49739181 | None:intergenic | 15.0% |
| !! | ATTGTTGATATTATTCAACA+CGG | - | chr8_4:49736298-49736317 | Msa1330550:intron | 20.0% |
| !! | ATTAACTTTACTTAATGGTT+AGG | - | chr8_4:49736433-49736452 | Msa1330550:intron | 20.0% |
| !! | TTAACTTTACTTAATGGTTA+GGG | - | chr8_4:49736434-49736453 | Msa1330550:intron | 20.0% |
| !!! | TTTGTTGTGTTTTTGTTATT+AGG | - | chr8_4:49736818-49736837 | Msa1330550:intron | 20.0% |
| !!! | TTGTTGTGTTTTTGTTATTA+GGG | - | chr8_4:49736819-49736838 | Msa1330550:intron | 20.0% |
| !!! | TATTTTTTGTTTGGTTTTGT+AGG | - | chr8_4:49736857-49736876 | Msa1330550:intron | 20.0% |
| !! | ATAAACTTTGATCTATAAGT+TGG | + | chr8_4:49737310-49737329 | None:intergenic | 20.0% |
| !! | TACATTTCAATAGAATTTAG+GGG | + | chr8_4:49737369-49737388 | None:intergenic | 20.0% |
| !! | GTTACATTTCAATAGAATTT+AGG | + | chr8_4:49737371-49737390 | None:intergenic | 20.0% |
| !! | TGCTCATTGAAAAAATAAAT+GGG | + | chr8_4:49737400-49737419 | None:intergenic | 20.0% |
| !! | TCATCCTATTACATAAATAA+AGG | - | chr8_4:49738236-49738255 | Msa1330550:intron | 20.0% |
| !! | CATCCTATTACATAAATAAA+GGG | - | chr8_4:49738237-49738256 | Msa1330550:intron | 20.0% |
| !! | TTCCCAATAAAATTAAATTG+AGG | - | chr8_4:49738335-49738354 | Msa1330550:intron | 20.0% |
| !!! | CACCTCAATTTAATTTTATT+GGG | + | chr8_4:49738340-49738359 | None:intergenic | 20.0% |
| !! | AAAATAGGAATCTATGTATA+TGG | - | chr8_4:49738525-49738544 | Msa1330550:intron | 20.0% |
| !!! | TTTTAAAATTATGATGAGCT+GGG | - | chr8_4:49738684-49738703 | Msa1330550:CDS | 20.0% |
| !! | TAACTATAAGACAAATCAAA+TGG | + | chr8_4:49738893-49738912 | None:intergenic | 20.0% |
| !!! | GACATTTGATTTTTTTGTTT+GGG | - | chr8_4:49739264-49739283 | Msa1330550:CDS | 20.0% |
| !!! | TTTTTTTTAAGAATGCAACT+TGG | + | chr8_4:49739420-49739439 | None:intergenic | 20.0% |
| ! | TTGAAACTCATAACATATTC+AGG | + | chr8_4:49736751-49736770 | None:intergenic | 25.0% |
| ! | TTCTTATCCTGTAAAACAAA+CGG | + | chr8_4:49737112-49737131 | None:intergenic | 25.0% |
| ! | GTGCTCATTGAAAAAATAAA+TGG | + | chr8_4:49737401-49737420 | None:intergenic | 25.0% |
| ! | TTTCAAAAGGAAACAATACA+GGG | + | chr8_4:49737526-49737545 | None:intergenic | 25.0% |
| !! | TTTTCAAAAGGAAACAATAC+AGG | + | chr8_4:49737527-49737546 | None:intergenic | 25.0% |
| !!! | ATGACTTTCAAGTTTTCAAA+AGG | + | chr8_4:49737539-49737558 | None:intergenic | 25.0% |
| ! | ATTTGAGAAAATTAGACTCT+AGG | + | chr8_4:49737626-49737645 | None:intergenic | 25.0% |
| ! | AAAAGAAAATGACTTCTATG+TGG | - | chr8_4:49738098-49738117 | Msa1330550:intron | 25.0% |
| !! | ACACCCTTTATTTATGTAAT+AGG | + | chr8_4:49738243-49738262 | None:intergenic | 25.0% |
| ! | TCTTATTAGTGCAAAAATAG+AGG | - | chr8_4:49738264-49738283 | Msa1330550:intron | 25.0% |
| ! | CTTATTAGTGCAAAAATAGA+GGG | - | chr8_4:49738265-49738284 | Msa1330550:intron | 25.0% |
| ! | TTATTAGTGCAAAAATAGAG+GGG | - | chr8_4:49738266-49738285 | Msa1330550:intron | 25.0% |
| !!! | GCACCTCAATTTAATTTTAT+TGG | + | chr8_4:49738341-49738360 | None:intergenic | 25.0% |
| ! | TGGTTGGAAAATTAGAAAAT+AGG | - | chr8_4:49738510-49738529 | Msa1330550:intron | 25.0% |
| !!! | GTTTTAAAATTATGATGAGC+TGG | - | chr8_4:49738683-49738702 | Msa1330550:CDS | 25.0% |
| !! | ATATTTCTTTTCTGTAGAAG+GGG | + | chr8_4:49738826-49738845 | None:intergenic | 25.0% |
| !! | CATATTTCTTTTCTGTAGAA+GGG | + | chr8_4:49738827-49738846 | None:intergenic | 25.0% |
| !! | TCATATTTCTTTTCTGTAGA+AGG | + | chr8_4:49738828-49738847 | None:intergenic | 25.0% |
| ! | TTCTACAGAAAAGAAATATG+AGG | - | chr8_4:49738827-49738846 | Msa1330550:CDS | 25.0% |
| ! | AGATGTTATCTACAACTTTA+TGG | - | chr8_4:49738950-49738969 | Msa1330550:intron | 25.0% |
| !!! | GCAATCTAATGTTTTGTTTT+TGG | + | chr8_4:49738990-49739009 | None:intergenic | 25.0% |
| ! | TAAAGAAAGTGATAGAATAC+TGG | - | chr8_4:49739174-49739193 | Msa1330550:CDS | 25.0% |
| !!! | CGACATTTGATTTTTTTGTT+TGG | - | chr8_4:49739263-49739282 | Msa1330550:CDS | 25.0% |
| !!! | ATTTGATTTTTTTGTTTGGG+TGG | - | chr8_4:49739267-49739286 | Msa1330550:CDS | 25.0% |
| ! | GTTAATTGTACTATAGTAGA+AGG | - | chr8_4:49739310-49739329 | Msa1330550:intron | 25.0% |
| !!! | TTTGCTTTCTTTTAGTTGTT+TGG | - | chr8_4:49739450-49739469 | Msa1330550:intron | 25.0% |
| ! | CTAGTGTAAACCTTTATTAT+TGG | + | chr8_4:49739514-49739533 | None:intergenic | 25.0% |
| ! | TAATAAAGGTTTACACTAGA+AGG | - | chr8_4:49739515-49739534 | Msa1330550:CDS | 25.0% |
| ! | AATAAAGGTTTACACTAGAA+GGG | - | chr8_4:49739516-49739535 | Msa1330550:CDS | 25.0% |
| ! | AATGTTCAAGTCTTACTAAA+GGG | - | chr8_4:49739596-49739615 | Msa1330550:CDS | 25.0% |
| !! | TTTTTCGTTATGTTCTACTT+TGG | - | chr8_4:49739648-49739667 | Msa1330550:CDS | 25.0% |
| TGTTTCGGTAAATTGTAGAT+TGG | + | chr8_4:49735962-49735981 | None:intergenic | 30.0% | |
| TTTCAGGAATCCTTGTAAAA+CGG | - | chr8_4:49736159-49736178 | Msa1330550:intron | 30.0% | |
| ! | GATATTATTCAACACGGTTT+TGG | - | chr8_4:49736304-49736323 | Msa1330550:intron | 30.0% |
| TTTGGTTATGTTCATAGCAA+TGG | - | chr8_4:49736322-49736341 | Msa1330550:intron | 30.0% | |
| GAATCATATTCTTCTGAACT+CGG | + | chr8_4:49736658-49736677 | None:intergenic | 30.0% | |
| AGTTCAGAAGAATATGATTC+TGG | - | chr8_4:49736658-49736677 | Msa1330550:intron | 30.0% | |
| CAAAAAGTTAGAAAAGTTGC+AGG | - | chr8_4:49737154-49737173 | Msa1330550:intron | 30.0% | |
| TATCAAATCTTTCAGAGCAA+AGG | - | chr8_4:49737198-49737217 | Msa1330550:intron | 30.0% | |
| TGTTAAGAATTTAGACATGC+TGG | - | chr8_4:49737261-49737280 | Msa1330550:intron | 30.0% | |
| TTTCAATAGAATTTAGGGGA+GGG | + | chr8_4:49737365-49737384 | None:intergenic | 30.0% | |
| ATTTCAATAGAATTTAGGGG+AGG | + | chr8_4:49737366-49737385 | None:intergenic | 30.0% | |
| ! | TTTTCCCCCATTTAATCAAA+AGG | + | chr8_4:49737446-49737465 | None:intergenic | 30.0% |
| ! | TAGAACTCTATTCATGGTTT+TGG | - | chr8_4:49737735-49737754 | Msa1330550:intron | 30.0% |
| ! | TCTTTCTTTATAAGCCGTTT+TGG | - | chr8_4:49737991-49738010 | Msa1330550:intron | 30.0% |
| TCTTATCAGTGCAAAAATAG+AGG | - | chr8_4:49738059-49738078 | Msa1330550:intron | 30.0% | |
| !!! | CAAAAATAGAGGTGTTTTTG+TGG | - | chr8_4:49738070-49738089 | Msa1330550:intron | 30.0% |
| TTTGCTAACACCGTTTATAA+CGG | + | chr8_4:49738202-49738221 | None:intergenic | 30.0% | |
| ! | TATAAACGGTGTTAGCAAAA+AGG | - | chr8_4:49738203-49738222 | Msa1330550:intron | 30.0% |
| TATTAGTGCAAAAATAGAGG+GGG | - | chr8_4:49738267-49738286 | Msa1330550:intron | 30.0% | |
| AATTATATTCATCTCCCTTG+AGG | + | chr8_4:49738315-49738334 | None:intergenic | 30.0% | |
| !!! | TGCATATTTTTGGCTTGTTT+TGG | - | chr8_4:49738389-49738408 | Msa1330550:intron | 30.0% |
| ! | TTCTAATTTTCCAACCACAA+TGG | + | chr8_4:49738507-49738526 | None:intergenic | 30.0% |
| TTCCTACTTCTTGATTACTA+TGG | - | chr8_4:49738605-49738624 | Msa1330550:intron | 30.0% | |
| TTCCATAGTAATCAAGAAGT+AGG | + | chr8_4:49738610-49738629 | None:intergenic | 30.0% | |
| TAGCTTCCAATAGTTAACAA+AGG | - | chr8_4:49738646-49738665 | Msa1330550:CDS | 30.0% | |
| ACAAGACCTTTGTTAACTAT+TGG | + | chr8_4:49738655-49738674 | None:intergenic | 30.0% | |
| !! | AGTGCTAGTTGATTTTAATG+TGG | - | chr8_4:49738754-49738773 | Msa1330550:intron | 30.0% |
| ! | TATTTCTTTTCTGTAGAAGG+GGG | + | chr8_4:49738825-49738844 | None:intergenic | 30.0% |
| ! | TCTGCTATGGTTTCAAATTT+TGG | + | chr8_4:49738858-49738877 | None:intergenic | 30.0% |
| AACCATAGCAGATTTAGATT+TGG | - | chr8_4:49738866-49738885 | Msa1330550:CDS | 30.0% | |
| GTTATCTACAACTTTATGGT+AGG | - | chr8_4:49738954-49738973 | Msa1330550:intron | 30.0% | |
| ACAAGAAAAAGAAACACATG+AGG | + | chr8_4:49739026-49739045 | None:intergenic | 30.0% | |
| TACTAACCAAACTTACATTG+AGG | - | chr8_4:49739215-49739234 | Msa1330550:CDS | 30.0% | |
| TTTCAACCTCAATGTAAGTT+TGG | + | chr8_4:49739224-49739243 | None:intergenic | 30.0% | |
| TGGTTGGAATAATGTAATAG+CGG | - | chr8_4:49739362-49739381 | Msa1330550:intron | 30.0% | |
| ATTCGATTACAACAATGTGT+TGG | - | chr8_4:49739484-49739503 | Msa1330550:CDS | 30.0% | |
| ! | TGTTGGTAGACCAATAATAA+AGG | - | chr8_4:49739501-49739520 | Msa1330550:CDS | 30.0% |
| CAATGTTCAAGTCTTACTAA+AGG | - | chr8_4:49739595-49739614 | Msa1330550:CDS | 30.0% | |
| ! | TTCTCTATCAAACTAGTTTC+AGG | - | chr8_4:49739671-49739690 | Msa1330550:CDS | 30.0% |
| ! | TCTCTATCAAACTAGTTTCA+GGG | - | chr8_4:49739672-49739691 | Msa1330550:CDS | 30.0% |
| GAATCCTTGTAAAACGGTAA+TGG | - | chr8_4:49736165-49736184 | Msa1330550:intron | 35.0% | |
| ! | TTGTTGACGAACAAGGTTTT+AGG | - | chr8_4:49736563-49736582 | Msa1330550:intron | 35.0% |
| ! | AGAAGAATATGATTCTGGAG+TGG | - | chr8_4:49736663-49736682 | Msa1330550:intron | 35.0% |
| CTCCAAACAATGAACTCTTT+GGG | + | chr8_4:49736703-49736722 | None:intergenic | 35.0% | |
| ACTCCAAACAATGAACTCTT+TGG | + | chr8_4:49736704-49736723 | None:intergenic | 35.0% | |
| AATTGCATAAAAGGCGAAGA+TGG | + | chr8_4:49736920-49736939 | None:intergenic | 35.0% | |
| ATGGAAACAATATCAGATGG+AGG | + | chr8_4:49736977-49736996 | None:intergenic | 35.0% | |
| GCAATGGAAACAATATCAGA+TGG | + | chr8_4:49736980-49736999 | None:intergenic | 35.0% | |
| ! | CAAGTTTCACAAGGAGTATA+GGG | - | chr8_4:49737000-49737019 | Msa1330550:intron | 35.0% |
| !!! | TGTGTTTCCGTTTGTTTTAC+AGG | - | chr8_4:49737102-49737121 | Msa1330550:intron | 35.0% |
| AGGTACTTCTATTCTCTCTT+TGG | - | chr8_4:49737218-49737237 | Msa1330550:intron | 35.0% | |
| TTCAATAGAATTTAGGGGAG+GGG | + | chr8_4:49737364-49737383 | None:intergenic | 35.0% | |
| !! | TCAGCTGCCTTTTGATTAAA+TGG | - | chr8_4:49737436-49737455 | Msa1330550:intron | 35.0% |
| !! | CAGCTGCCTTTTGATTAAAT+GGG | - | chr8_4:49737437-49737456 | Msa1330550:intron | 35.0% |
| !! | AGCTGCCTTTTGATTAAATG+GGG | - | chr8_4:49737438-49737457 | Msa1330550:intron | 35.0% |
| ACCAACAAAAGCAAACTTCA+GGG | + | chr8_4:49737473-49737492 | None:intergenic | 35.0% | |
| TCTTCGTAGAACTCTATTCA+TGG | - | chr8_4:49737729-49737748 | Msa1330550:intron | 35.0% | |
| !!! | TCATGGTTTTGGATGATGAA+TGG | - | chr8_4:49737746-49737765 | Msa1330550:intron | 35.0% |
| TGACTTGACTTCTATGTAGT+TGG | - | chr8_4:49737900-49737919 | Msa1330550:intron | 35.0% | |
| !! | TTATAAGCCGTTTTGGCAAA+AGG | - | chr8_4:49737998-49738017 | Msa1330550:intron | 35.0% |
| !! | TATAAGCCGTTTTGGCAAAA+GGG | - | chr8_4:49737999-49738018 | Msa1330550:intron | 35.0% |
| TGCCACCTATTACACAAATA+AGG | - | chr8_4:49738030-49738049 | Msa1330550:intron | 35.0% | |
| GCCACCTATTACACAAATAA+GGG | - | chr8_4:49738031-49738050 | Msa1330550:intron | 35.0% | |
| CCACCTATTACACAAATAAG+GGG | - | chr8_4:49738032-49738051 | Msa1330550:intron | 35.0% | |
| ! | ACACCCCTTATTTGTGTAAT+AGG | + | chr8_4:49738038-49738057 | None:intergenic | 35.0% |
| TCTGTCTCTTCCGTTATAAA+CGG | - | chr8_4:49738189-49738208 | Msa1330550:intron | 35.0% | |
| ATTAGTGCAAAAATAGAGGG+GGG | - | chr8_4:49738268-49738287 | Msa1330550:intron | 35.0% | |
| TTACATTTCAAGAGACCTCA+AGG | - | chr8_4:49738297-49738316 | Msa1330550:intron | 35.0% | |
| TACATTTCAAGAGACCTCAA+GGG | - | chr8_4:49738298-49738317 | Msa1330550:intron | 35.0% | |
| !!! | TGTTTTGGCTGTATCAAATG+TGG | - | chr8_4:49738404-49738423 | Msa1330550:intron | 35.0% |
| !!! | GTTTTGGCTGTATCAAATGT+GGG | - | chr8_4:49738405-49738424 | Msa1330550:intron | 35.0% |
| !! | TTTTGGCTGTATCAAATGTG+GGG | - | chr8_4:49738406-49738425 | Msa1330550:intron | 35.0% |
| ! | AATTTTCCAACCACAATGGA+GGG | + | chr8_4:49738503-49738522 | None:intergenic | 35.0% |
| ! | TAATTTTCCAACCACAATGG+AGG | + | chr8_4:49738504-49738523 | None:intergenic | 35.0% |
| ATCAAGAAGTAGGAAGAACA+TGG | + | chr8_4:49738600-49738619 | None:intergenic | 35.0% | |
| ATGAGCTGGGAATAAGAATA+GGG | - | chr8_4:49738697-49738716 | Msa1330550:CDS | 35.0% | |
| !! | GCTAGTTGATTTTAATGTGG+TGG | - | chr8_4:49738757-49738776 | Msa1330550:intron | 35.0% |
| ! | TTAATGTGGTGGAAATCACA+TGG | - | chr8_4:49738768-49738787 | Msa1330550:intron | 35.0% |
| GACCAAATCTAAATCTGCTA+TGG | + | chr8_4:49738871-49738890 | None:intergenic | 35.0% | |
| ATAGTTTAAAGACACAGGGT+TGG | + | chr8_4:49738924-49738943 | None:intergenic | 35.0% | |
| AACCCTGTGTCTTTAAACTA+TGG | - | chr8_4:49738923-49738942 | Msa1330550:CDS | 35.0% | |
| CTCCATAGTTTAAAGACACA+GGG | + | chr8_4:49738928-49738947 | None:intergenic | 35.0% | |
| ACTCCATAGTTTAAAGACAC+AGG | + | chr8_4:49738929-49738948 | None:intergenic | 35.0% | |
| ! | TAAAGCTTGCATGCATTTTC+TGG | + | chr8_4:49739100-49739119 | None:intergenic | 35.0% |
| GAAAACAAGCATGAGAAACA+AGG | - | chr8_4:49739240-49739259 | Msa1330550:CDS | 35.0% | |
| !! | GGAATAATGTAATAGCGGAT+AGG | - | chr8_4:49739367-49739386 | Msa1330550:intron | 35.0% |
| AAATACTGGAGTTGTGATTG+AGG | - | chr8_4:49739563-49739582 | Msa1330550:CDS | 35.0% | |
| AATACTGGAGTTGTGATTGA+GGG | - | chr8_4:49739564-49739583 | Msa1330550:CDS | 35.0% | |
| ! | ATTTAGAGCTCACTCTTCTA+GGG | - | chr8_4:49739695-49739714 | Msa1330550:CDS | 35.0% |
| TTGAGTAGCAAGAAAGTTGA+TGG | - | chr8_4:49739805-49739824 | Msa1330550:CDS | 35.0% | |
| ATCAAGAGTAAGACCCAAAA+GGG | - | chr8_4:49739846-49739865 | Msa1330550:CDS | 35.0% | |
| AAACGAATCTGCTTCGGATT+AGG | + | chr8_4:49736096-49736115 | None:intergenic | 40.0% | |
| AACCACAAACGAATCTGCTT+CGG | + | chr8_4:49736102-49736121 | None:intergenic | 40.0% | |
| TTTGTGGTTTAAGTGCGCAA+GGG | - | chr8_4:49736113-49736132 | Msa1330550:intron | 40.0% | |
| CTGAAAATCGCTACTCCATA+GGG | + | chr8_4:49736145-49736164 | None:intergenic | 40.0% | |
| !! | TGTGCCATTACCGTTTTACA+AGG | + | chr8_4:49736172-49736191 | None:intergenic | 40.0% |
| ATGCTAATGTGAAACACGTG+TGG | - | chr8_4:49736251-49736270 | Msa1330550:intron | 40.0% | |
| AATGTGAAACACGTGTGGTA+CGG | - | chr8_4:49736256-49736275 | Msa1330550:intron | 40.0% | |
| ! | CTTTCAAGTGGAGAATCGTT+TGG | + | chr8_4:49736361-49736380 | None:intergenic | 40.0% |
| CAAACGATTCTCCACTTGAA+AGG | - | chr8_4:49736359-49736378 | Msa1330550:intron | 40.0% | |
| ATTAACTCGTGCCTTTCAAG+TGG | + | chr8_4:49736373-49736392 | None:intergenic | 40.0% | |
| AGAACTGTTGTTGACGAACA+AGG | - | chr8_4:49736556-49736575 | Msa1330550:intron | 40.0% | |
| TTGCTTTGTCGTGTGATCAT+GGG | - | chr8_4:49736592-49736611 | Msa1330550:intron | 40.0% | |
| TCGTGTGATCATGGGAAAAT+TGG | - | chr8_4:49736600-49736619 | Msa1330550:intron | 40.0% | |
| TGTGATCATGGGAAAATTGG+AGG | - | chr8_4:49736603-49736622 | Msa1330550:intron | 40.0% | |
| CTCCCAAAGAGTTCATTGTT+TGG | - | chr8_4:49736698-49736717 | Msa1330550:intron | 40.0% | |
| ! | TTCAAACTTGCTTCCGACAA+AGG | - | chr8_4:49736766-49736785 | Msa1330550:intron | 40.0% |
| CAAGTACACACTACCTTTGT+CGG | + | chr8_4:49736782-49736801 | None:intergenic | 40.0% | |
| ! | TGTGTACTTGTGTGTTGTTG+TGG | - | chr8_4:49736792-49736811 | Msa1330550:intron | 40.0% |
| !!! | TGGTTTTGTAGGACATGAGA+AGG | - | chr8_4:49736868-49736887 | Msa1330550:intron | 40.0% |
| TTTGTAGGACATGAGAAGGT+TGG | - | chr8_4:49736872-49736891 | Msa1330550:intron | 40.0% | |
| AGAGTCGGGAATTGCATAAA+AGG | + | chr8_4:49736929-49736948 | None:intergenic | 40.0% | |
| TTCCATTGCCAAGTTTCACA+AGG | - | chr8_4:49736991-49737010 | Msa1330550:intron | 40.0% | |
| CCTATACTCCTTGTGAAACT+TGG | + | chr8_4:49737002-49737021 | None:intergenic | 40.0% | |
| ! | CCAAGTTTCACAAGGAGTAT+AGG | - | chr8_4:49736999-49737018 | Msa1330550:intron | 40.0% |
| GGAGTATAGGGTAAGTGTTT+CGG | - | chr8_4:49737012-49737031 | Msa1330550:intron | 40.0% | |
| !! | ACTTGGTTTGACTTGGTTGT+GGG | - | chr8_4:49737035-49737054 | Msa1330550:intron | 40.0% |
| TCAATAGAATTTAGGGGAGG+GGG | + | chr8_4:49737363-49737382 | None:intergenic | 40.0% | |
| !! | GCTGCCTTTTGATTAAATGG+GGG | - | chr8_4:49737439-49737458 | Msa1330550:intron | 40.0% |
| !! | ACCCTGAAGTTTGCTTTTGT+TGG | - | chr8_4:49737469-49737488 | Msa1330550:intron | 40.0% |
| CACCAACAAAAGCAAACTTC+AGG | + | chr8_4:49737474-49737493 | None:intergenic | 40.0% | |
| CTATGCTTCAACGGGAAAAT+AGG | + | chr8_4:49737565-49737584 | None:intergenic | 40.0% | |
| AAGCTCTACTATGCTTCAAC+GGG | + | chr8_4:49737573-49737592 | None:intergenic | 40.0% | |
| GAAGCTCTACTATGCTTCAA+CGG | + | chr8_4:49737574-49737593 | None:intergenic | 40.0% | |
| TGAAGCATAGTAGAGCTTCT+TGG | - | chr8_4:49737575-49737594 | Msa1330550:intron | 40.0% | |
| ATCGGCCACAAAAACACAAT+CGG | + | chr8_4:49737871-49737890 | None:intergenic | 40.0% | |
| GTCAAGTCATCTTCTTCGAT+CGG | + | chr8_4:49737889-49737908 | None:intergenic | 40.0% | |
| TTGACTTCTATGTAGTTGGC+TGG | - | chr8_4:49737904-49737923 | Msa1330550:intron | 40.0% | |
| TGACTTCTATGTAGTTGGCT+GGG | - | chr8_4:49737905-49737924 | Msa1330550:intron | 40.0% | |
| ! | CCCCTTATTTGTGTAATAGG+TGG | + | chr8_4:49738035-49738054 | None:intergenic | 40.0% |
| GAAAATGACTTCTATGTGGC+TGG | - | chr8_4:49738102-49738121 | Msa1330550:intron | 40.0% | |
| TGTTGAGAGACACGATACAT+TGG | - | chr8_4:49738149-49738168 | Msa1330550:intron | 40.0% | |
| ! | CGTTGGCATCGAAAAAAGTA+GGG | + | chr8_4:49738369-49738388 | None:intergenic | 40.0% |
| ! | ACGTTGGCATCGAAAAAAGT+AGG | + | chr8_4:49738370-49738389 | None:intergenic | 40.0% |
| ! | GATGCCAACGTGCATATTTT+TGG | - | chr8_4:49738379-49738398 | Msa1330550:intron | 40.0% |
| CAAGCCAAAAATATGCACGT+TGG | + | chr8_4:49738386-49738405 | None:intergenic | 40.0% | |
| ! | TGTGATAGCCTTTTCCTACT+AGG | - | chr8_4:49738465-49738484 | Msa1330550:intron | 40.0% |
| CTTGATTACTATGGAAACCC+AGG | - | chr8_4:49738614-49738633 | Msa1330550:intron | 40.0% | |
| GGAAGCTAAATAGACATCCT+GGG | + | chr8_4:49738634-49738653 | None:intergenic | 40.0% | |
| TGGAAGCTAAATAGACATCC+TGG | + | chr8_4:49738635-49738654 | None:intergenic | 40.0% | |
| GATGAGCTGGGAATAAGAAT+AGG | - | chr8_4:49738696-49738715 | Msa1330550:CDS | 40.0% | |
| !! | CACATGAGGTTTTGTCAAAG+AGG | + | chr8_4:49739012-49739031 | None:intergenic | 40.0% |
| !! | GTCTTTCTAGTTACAGCTAC+TGG | - | chr8_4:49739342-49739361 | Msa1330550:intron | 40.0% |
| ! | TTCTAGTTACAGCTACTGGT+TGG | - | chr8_4:49739346-49739365 | Msa1330550:intron | 40.0% |
| !! | TAGCGGATAGGCTTTTACTA+TGG | - | chr8_4:49739379-49739398 | Msa1330550:intron | 40.0% |
| ! | AGCGGATAGGCTTTTACTAT+GGG | - | chr8_4:49739380-49739399 | Msa1330550:intron | 40.0% |
| TCAAACATTTCCCTACAGAC+AGG | - | chr8_4:49739539-49739558 | Msa1330550:CDS | 40.0% | |
| CAAACATTTCCCTACAGACA+GGG | - | chr8_4:49739540-49739559 | Msa1330550:CDS | 40.0% | |
| ! | GATTTAGAGCTCACTCTTCT+AGG | - | chr8_4:49739694-49739713 | Msa1330550:CDS | 40.0% |
| ! | TTTAGAGCTCACTCTTCTAG+GGG | - | chr8_4:49739696-49739715 | Msa1330550:CDS | 40.0% |
| TGTGTGTTGAAACTGTGTAG+AGG | - | chr8_4:49739749-49739768 | Msa1330550:CDS | 40.0% | |
| GTGTGTTGAAACTGTGTAGA+GGG | - | chr8_4:49739750-49739769 | Msa1330550:CDS | 40.0% | |
| TGTGTTGAAACTGTGTAGAG+GGG | - | chr8_4:49739751-49739770 | Msa1330550:CDS | 40.0% | |
| CATCAAGAGTAAGACCCAAA+AGG | - | chr8_4:49739845-49739864 | Msa1330550:CDS | 40.0% | |
| ! | ATGGAATCCATAGCCCTTTT+GGG | + | chr8_4:49739862-49739881 | None:intergenic | 40.0% |
| TTACCGAAACATGATTCCGC+CGG | - | chr8_4:49735971-49735990 | Msa1330550:CDS | 45.0% | |
| !! | AATCGCTGATTCATCTTCGC+CGG | + | chr8_4:49735993-49736012 | None:intergenic | 45.0% |
| ACGATTCCCGAAGGATAGTT+CGG | - | chr8_4:49736044-49736063 | Msa1330550:CDS | 45.0% | |
| TCGTCTTCCGAACTATCCTT+CGG | + | chr8_4:49736054-49736073 | None:intergenic | 45.0% | |
| AAGGATAGTTCGGAAGACGA+CGG | - | chr8_4:49736054-49736073 | Msa1330550:CDS | 45.0% | |
| ATCCGAAGCAGATTCGTTTG+TGG | - | chr8_4:49736097-49736116 | Msa1330550:intron | 45.0% | |
| GTTTGTGGTTTAAGTGCGCA+AGG | - | chr8_4:49736112-49736131 | Msa1330550:intron | 45.0% | |
| CCTGAAAATCGCTACTCCAT+AGG | + | chr8_4:49736146-49736165 | None:intergenic | 45.0% | |
| ! | CCTATGGAGTAGCGATTTTC+AGG | - | chr8_4:49736143-49736162 | Msa1330550:intron | 45.0% |
| ! | GTTGCTTTGTCGTGTGATCA+TGG | - | chr8_4:49736591-49736610 | Msa1330550:intron | 45.0% |
| ATGAGAAGGTTGGAGTTGGA+GGG | - | chr8_4:49736882-49736901 | Msa1330550:intron | 45.0% | |
| AAAGCGCAGAAATCAGAGTC+GGG | + | chr8_4:49736943-49736962 | None:intergenic | 45.0% | |
| ! | GAAAGCGCAGAAATCAGAGT+CGG | + | chr8_4:49736944-49736963 | None:intergenic | 45.0% |
| CTCCTTGTGAAACTTGGCAA+TGG | + | chr8_4:49736996-49737015 | None:intergenic | 45.0% | |
| TAGGGTAAGTGTTTCGGACT+TGG | - | chr8_4:49737018-49737037 | Msa1330550:intron | 45.0% | |
| ! | GTTTCGGACTTGGTTTGACT+TGG | - | chr8_4:49737028-49737047 | Msa1330550:intron | 45.0% |
| !! | GACTTGGTTTGACTTGGTTG+TGG | - | chr8_4:49737034-49737053 | Msa1330550:intron | 45.0% |
| !! | CTTGGTTTGACTTGGTTGTG+GGG | - | chr8_4:49737036-49737055 | Msa1330550:intron | 45.0% |
| !! | GCTGGTCTTTCACTTCACTT+TGG | - | chr8_4:49737279-49737298 | Msa1330550:intron | 45.0% |
| !! | TGACGCCGATTGTGTTTTTG+TGG | - | chr8_4:49737863-49737882 | Msa1330550:intron | 45.0% |
| ! | AACCAGCCCTTTTGCCAAAA+CGG | + | chr8_4:49738008-49738027 | None:intergenic | 45.0% |
| ATCGCACACCTAGTAGGAAA+AGG | + | chr8_4:49738476-49738495 | None:intergenic | 45.0% | |
| ATTTCACCCTCCATTGTGGT+TGG | - | chr8_4:49738494-49738513 | Msa1330550:intron | 45.0% | |
| GCAGATTGTCTGATTGAAGC+TGG | - | chr8_4:49738564-49738583 | Msa1330550:intron | 45.0% | |
| GGGTTTGAATTGCAAACTGC+AGG | - | chr8_4:49738717-49738736 | Msa1330550:intron | 45.0% | |
| TCTGTAGAAGGGGGTTTAAG+TGG | + | chr8_4:49738816-49738835 | None:intergenic | 45.0% | |
| !! | CATGCAAGCTTTAAGCAAGC+CGG | - | chr8_4:49739107-49739126 | Msa1330550:CDS | 45.0% |
| AATCATTCCATCCACGTTGC+TGG | + | chr8_4:49739137-49739156 | None:intergenic | 45.0% | |
| ! | GCGGATAGGCTTTTACTATG+GGG | - | chr8_4:49739381-49739400 | Msa1330550:intron | 45.0% |
| CCAGTATTTCCCTGTCTGTA+GGG | + | chr8_4:49739552-49739571 | None:intergenic | 45.0% | |
| TCCAGTATTTCCCTGTCTGT+AGG | + | chr8_4:49739553-49739572 | None:intergenic | 45.0% | |
| TTAGAGCTCACTCTTCTAGG+GGG | - | chr8_4:49739697-49739716 | Msa1330550:CDS | 45.0% | |
| !! | TCTTCTAGGGGGGTCTTTTA+CGG | - | chr8_4:49739708-49739727 | Msa1330550:CDS | 45.0% |
| AGTAAGACCCAAAAGGGCTA+TGG | - | chr8_4:49739852-49739871 | Msa1330550:CDS | 45.0% | |
| ! | CATGGAATCCATAGCCCTTT+TGG | + | chr8_4:49739863-49739882 | None:intergenic | 45.0% |
| GAACTATCCTTCGGGAATCG+TGG | + | chr8_4:49736045-49736064 | None:intergenic | 50.0% | |
| CGTCTTCCGAACTATCCTTC+GGG | + | chr8_4:49736053-49736072 | None:intergenic | 50.0% | |
| ATAGTTCGGAAGACGACGGA+GGG | - | chr8_4:49736058-49736077 | Msa1330550:CDS | 50.0% | |
| ! | AAACGGTAATGGCACAAGCG+AGG | - | chr8_4:49736176-49736195 | Msa1330550:intron | 50.0% |
| ! | GTTTGAGATCTTCGCACGTG+CGG | - | chr8_4:49736207-49736226 | Msa1330550:intron | 50.0% |
| GGACATGAGAAGGTTGGAGT+TGG | - | chr8_4:49736878-49736897 | Msa1330550:intron | 50.0% | |
| CATGAGAAGGTTGGAGTTGG+AGG | - | chr8_4:49736881-49736900 | Msa1330550:intron | 50.0% | |
| CAAAAGGCAGCTGAAGTCGA+AGG | + | chr8_4:49737430-49737449 | None:intergenic | 50.0% | |
| ATGACTTCTATGTGGCTGGC+TGG | - | chr8_4:49738106-49738125 | Msa1330550:intron | 50.0% | |
| ! | TGACTTCTATGTGGCTGGCT+GGG | - | chr8_4:49738107-49738126 | Msa1330550:intron | 50.0% |
| GGTGAAATCGCACACCTAGT+AGG | + | chr8_4:49738482-49738501 | None:intergenic | 50.0% | |
| TGCGATTTCACCCTCCATTG+TGG | - | chr8_4:49738490-49738509 | Msa1330550:intron | 50.0% | |
| CCCTACAGACAGGGAAATAC+TGG | - | chr8_4:49739549-49739568 | Msa1330550:CDS | 50.0% | |
| ! | TAGAGCTCACTCTTCTAGGG+GGG | - | chr8_4:49739698-49739717 | Msa1330550:CDS | 50.0% |
| ! | TAGGGGGGTCTTTTACGGTT+GGG | - | chr8_4:49739713-49739732 | Msa1330550:CDS | 50.0% |
| ! | TTTTACGGTTGGGGCAAGGA+TGG | - | chr8_4:49739723-49739742 | Msa1330550:CDS | 50.0% |
| GTTGAAACTGTGTAGAGGGG+TGG | - | chr8_4:49739754-49739773 | Msa1330550:CDS | 50.0% | |
| TCGCCGGCGGAATCATGTTT+CGG | + | chr8_4:49735977-49735996 | None:intergenic | 55.0% | |
| GGATGCGACACTCTCGCAAT+CGG | + | chr8_4:49736017-49736036 | None:intergenic | 55.0% | |
| !! | GATTGCGAGAGTGTCGCATC+CGG | - | chr8_4:49736016-49736035 | Msa1330550:CDS | 55.0% |
| GATAGTTCGGAAGACGACGG+AGG | - | chr8_4:49736057-49736076 | Msa1330550:CDS | 55.0% | |
| GCGCAAGGGTTGAAACCCTA+TGG | - | chr8_4:49736127-49736146 | Msa1330550:intron | 55.0% | |
| AAATTGGAGGCTGTGCCTGC+AGG | - | chr8_4:49736616-49736635 | Msa1330550:intron | 55.0% | |
| ! | CTGCGTTGATCAGAACCTGC+AGG | + | chr8_4:49736634-49736653 | None:intergenic | 55.0% |
| AAGGCAGCTGAAGTCGAAGG+AGG | + | chr8_4:49737427-49737446 | None:intergenic | 55.0% | |
| !! | AGCCGTTTTGGCAAAAGGGC+TGG | - | chr8_4:49738003-49738022 | Msa1330550:intron | 55.0% |
| CATTCCATCCACGTTGCTGG+CGG | + | chr8_4:49739134-49739153 | None:intergenic | 55.0% | |
| ! | CTAGGGGGGTCTTTTACGGT+TGG | - | chr8_4:49739712-49739731 | Msa1330550:CDS | 55.0% |
| ! | AGGGGGGTCTTTTACGGTTG+GGG | - | chr8_4:49739714-49739733 | Msa1330550:CDS | 55.0% |
| ! | GGTCTTTTACGGTTGGGGCA+AGG | - | chr8_4:49739719-49739738 | Msa1330550:CDS | 55.0% |
| GTGTAGAGGGGTGGCAAGAT+TGG | - | chr8_4:49739763-49739782 | Msa1330550:CDS | 55.0% | |
| TAGAGGGGTGGCAAGATTGG+CGG | - | chr8_4:49739766-49739785 | Msa1330550:CDS | 55.0% | |
| !! | CGCTGATTCATCTTCGCCGG+CGG | + | chr8_4:49735990-49736009 | None:intergenic | 60.0% |
| TGAGATCTTCGCACGTGCGG+TGG | - | chr8_4:49736210-49736229 | Msa1330550:intron | 60.0% | |
| CGTGCGGTGGCTAAAATGCG+CGG | - | chr8_4:49736223-49736242 | Msa1330550:intron | 60.0% | |
| CGGTGGCTAAAATGCGCGGT+GGG | - | chr8_4:49736227-49736246 | Msa1330550:intron | 60.0% | |
| GTGGGGCTTGTGACAGTCAC+TGG | - | chr8_4:49737053-49737072 | Msa1330550:intron | 60.0% | |
| GCAAGATTGGCGGCGTGAAG+AGG | - | chr8_4:49739776-49739795 | Msa1330550:CDS | 60.0% | |
| AGATTGGCGGCGTGAAGAGG+AGG | - | chr8_4:49739779-49739798 | Msa1330550:CDS | 60.0% | |
| !! | TGCGAGAGTGTCGCATCCGG+CGG | - | chr8_4:49736019-49736038 | Msa1330550:CDS | 65.0% |
| GCGGTGGCTAAAATGCGCGG+TGG | - | chr8_4:49736226-49736245 | Msa1330550:intron | 65.0% | |
| CATCCACGTTGCTGGCGGTC+CGG | + | chr8_4:49739129-49739148 | None:intergenic | 65.0% | |
| CCTTCGGGAATCGTGGCCGC+CGG | + | chr8_4:49736038-49736057 | None:intergenic | 70.0% | |
| AAGCCGGACCGCCAGCAACG+TGG | - | chr8_4:49739123-49739142 | Msa1330550:CDS | 70.0% | |
| CGGACCGCCAGCAACGTGGA+TGG | - | chr8_4:49739127-49739146 | Msa1330550:CDS | 70.0% | |
| CCGGCGGCCACGATTCCCGA+AGG | - | chr8_4:49736035-49736054 | Msa1330550:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 49735950 | 49739897 | 49735950 | ID=Msa1330550;Name=Msa1330550 |
| chr8_4 | mRNA | 49735950 | 49739897 | 49735950 | ID=Msa1330550-mRNA-1;Parent=Msa1330550;Name=Msa1330550-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.5|0.6|0.8|1|1|5|0|347 |
| chr8_4 | exon | 49739461 | 49739897 | 49739461 | ID=Msa1330550-mRNA-1:exon:14464;Parent=Msa1330550-mRNA-1 |
| chr8_4 | exon | 49739060 | 49739298 | 49739060 | ID=Msa1330550-mRNA-1:exon:14463;Parent=Msa1330550-mRNA-1 |
| chr8_4 | exon | 49738826 | 49738968 | 49738826 | ID=Msa1330550-mRNA-1:exon:14462;Parent=Msa1330550-mRNA-1 |
| chr8_4 | exon | 49738628 | 49738723 | 49738628 | ID=Msa1330550-mRNA-1:exon:14461;Parent=Msa1330550-mRNA-1 |
| chr8_4 | exon | 49735950 | 49736078 | 49735950 | ID=Msa1330550-mRNA-1:exon:14460;Parent=Msa1330550-mRNA-1 |
| chr8_4 | CDS | 49739461 | 49739897 | 49739461 | ID=Msa1330550-mRNA-1:cds;Parent=Msa1330550-mRNA-1 |
| chr8_4 | CDS | 49739060 | 49739298 | 49739060 | ID=Msa1330550-mRNA-1:cds;Parent=Msa1330550-mRNA-1 |
| chr8_4 | CDS | 49738826 | 49738968 | 49738826 | ID=Msa1330550-mRNA-1:cds;Parent=Msa1330550-mRNA-1 |
| chr8_4 | CDS | 49738628 | 49738723 | 49738628 | ID=Msa1330550-mRNA-1:cds;Parent=Msa1330550-mRNA-1 |
| chr8_4 | CDS | 49735950 | 49736078 | 49735950 | ID=Msa1330550-mRNA-1:cds;Parent=Msa1330550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
