Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339320 | AFK46915.1 | 94.660 | 206 | 4 | 1 | 1 | 199 | 1 | 206 | 7.46e-137 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339320 | I3T323 | 94.660 | 206 | 4 | 1 | 1 | 199 | 1 | 206 | 3.56e-137 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010800 | Msa1339320 | 0.820577 | 6.372542e-53 | -8.615850e-47 |
| Msa0074750 | Msa1339320 | 0.812279 | 4.593297e-51 | -8.615850e-47 |
| Msa0606080 | Msa1339320 | 0.865074 | 7.686562e-65 | -8.615850e-47 |
| Msa0645530 | Msa1339320 | 0.800824 | 1.202389e-48 | -8.615850e-47 |
| Msa0649100 | Msa1339320 | 0.804263 | 2.348882e-49 | -8.615850e-47 |
| Msa0651560 | Msa1339320 | 0.837682 | 4.500632e-57 | -8.615850e-47 |
| Msa0697680 | Msa1339320 | 0.820088 | 8.250854e-53 | -8.615850e-47 |
| Msa0701100 | Msa1339320 | 0.801094 | 1.058748e-48 | -8.615850e-47 |
| Msa0707010 | Msa1339320 | 0.867347 | 1.463799e-65 | -8.615850e-47 |
| Msa0709120 | Msa1339320 | 0.828481 | 8.777992e-55 | -8.615850e-47 |
| Msa0746170 | Msa1339320 | 0.810029 | 1.412044e-50 | -8.615850e-47 |
| Msa0746210 | Msa1339320 | 0.801090 | 1.060768e-48 | -8.615850e-47 |
| Msa0789560 | Msa1339320 | 0.830098 | 3.556005e-55 | -8.615850e-47 |
| Msa0137510 | Msa1339320 | 0.808864 | 2.511086e-50 | -8.615850e-47 |
| Msa0139670 | Msa1339320 | 0.830485 | 2.859399e-55 | -8.615850e-47 |
| Msa0194920 | Msa1339320 | 0.807933 | 3.968010e-50 | -8.615850e-47 |
| Msa1234620 | Msa1339320 | 0.838283 | 3.153426e-57 | -8.615850e-47 |
| Msa1254620 | Msa1339320 | 0.800215 | 1.600121e-48 | -8.615850e-47 |
| Msa1297530 | Msa1339320 | 0.801133 | 1.039594e-48 | -8.615850e-47 |
| Msa1304810 | Msa1339320 | 0.826127 | 3.216946e-54 | -8.615850e-47 |
| Msa1330550 | Msa1339320 | 0.814323 | 1.633206e-51 | -8.615850e-47 |
| Msa1336040 | Msa1339320 | 0.815727 | 7.971285e-52 | -8.615850e-47 |
| Msa1339320 | Msa1366550 | 0.801264 | 9.773832e-49 | -8.615850e-47 |
| Msa1339320 | Msa1369920 | -0.803646 | 3.156958e-49 | -8.615850e-47 |
| Msa1339320 | Msa1382020 | 0.805944 | 1.045335e-49 | -8.615850e-47 |
| Msa1339320 | Msa1387240 | 0.843168 | 1.654462e-58 | -8.615850e-47 |
| Msa1339320 | Msa1391720 | 0.815475 | 9.070384e-52 | -8.615850e-47 |
| Msa1339320 | Msa1419840 | 0.801321 | 9.516187e-49 | -8.615850e-47 |
| Msa1339320 | Msa1434040 | 0.834577 | 2.766101e-56 | -8.615850e-47 |
| Msa1339320 | Msa1454960 | 0.812261 | 4.633267e-51 | -8.615850e-47 |
| Msa0376420 | Msa1339320 | 0.835539 | 1.582200e-56 | -8.615850e-47 |
| Msa0376600 | Msa1339320 | 0.807842 | 4.148186e-50 | -8.615850e-47 |
| Msa0382370 | Msa1339320 | 0.842429 | 2.600325e-58 | -8.615850e-47 |
| Msa0388730 | Msa1339320 | 0.835442 | 1.674108e-56 | -8.615850e-47 |
| Msa0395980 | Msa1339320 | 0.840951 | 6.381406e-58 | -8.615850e-47 |
| Msa0403490 | Msa1339320 | 0.824696 | 7.016896e-54 | -8.615850e-47 |
| Msa0411240 | Msa1339320 | 0.832128 | 1.127745e-55 | -8.615850e-47 |
| Msa0431210 | Msa1339320 | 0.802557 | 5.300858e-49 | -8.615850e-47 |
| Msa0432160 | Msa1339320 | 0.839054 | 1.992855e-57 | -8.615850e-47 |
| Msa0440510 | Msa1339320 | 0.819449 | 1.154877e-52 | -8.615850e-47 |
| Msa0476680 | Msa1339320 | 0.837608 | 4.702606e-57 | -8.615850e-47 |
| Msa1022030 | Msa1339320 | 0.894170 | 3.171666e-75 | -8.615850e-47 |
| Msa1062040 | Msa1339320 | 0.806068 | 9.841774e-50 | -8.615850e-47 |
| Msa0244970 | Msa1339320 | 0.825329 | 4.975690e-54 | -8.615850e-47 |
| Msa0271550 | Msa1339320 | 0.811211 | 7.843555e-51 | -8.615850e-47 |
| Msa0319290 | Msa1339320 | 0.825978 | 3.489553e-54 | -8.615850e-47 |
| Msa0320470 | Msa1339320 | 0.805938 | 1.048322e-49 | -8.615850e-47 |
| Msa0362890 | Msa1339320 | 0.811671 | 6.230631e-51 | -8.615850e-47 |
| Msa1107200 | Msa1339320 | 0.810122 | 1.348840e-50 | -8.615850e-47 |
| Msa1127430 | Msa1339320 | 0.818998 | 1.462388e-52 | -8.615850e-47 |
| Msa1209190 | Msa1339320 | 0.836449 | 9.297924e-57 | -8.615850e-47 |
| Msa1209860 | Msa1339320 | 0.805151 | 1.532832e-49 | -8.615850e-47 |
| Msa0486820 | Msa1339320 | 0.809604 | 1.743485e-50 | -8.615850e-47 |
| Msa0491000 | Msa1339320 | 0.828322 | 9.587174e-55 | -8.615850e-47 |
| Msa0516240 | Msa1339320 | 0.832936 | 7.113046e-56 | -8.615850e-47 |
| Msa0521010 | Msa1339320 | 0.837762 | 4.292828e-57 | -8.615850e-47 |
| Msa0544170 | Msa1339320 | 0.802996 | 4.302583e-49 | -8.615850e-47 |
| Msa0545020 | Msa1339320 | 0.800116 | 1.675913e-48 | -8.615850e-47 |
| Msa0566350 | Msa1339320 | 0.817052 | 4.027487e-52 | -8.615850e-47 |
| Msa0566750 | Msa1339320 | 0.815532 | 8.807874e-52 | -8.615850e-47 |
| Msa0581400 | Msa1339320 | 0.809953 | 1.466411e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339320 | MtrunA17_Chr7g0241151 | 94.660 | 206 | 4 | 1 | 1 | 199 | 1 | 206 | 3.42e-140 | 397 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339320 | AT2G38000.1 | 50.952 | 210 | 84 | 6 | 1 | 199 | 1 | 202 | 4.37e-62 | 198 |
Find 70 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGACCTGAACTTGGTATT+TGG | 0.143432 | tig0003231:-152 | Msa1339320:CDS |
| TCATTAAGGAATTAAAATTT+TGG | 0.171220 | tig0003231:+2491 | None:intergenic |
| TTGAGTTAACTTTGTCATTA+AGG | 0.208466 | tig0003231:+2477 | None:intergenic |
| ATACACCGTTCTCAATAATT+TGG | 0.274752 | tig0003231:-2437 | Msa1339320:five_prime_UTR |
| TAATCATACCTTCGGAATTC+AGG | 0.308842 | tig0003231:+1077 | None:intergenic |
| GGTTACTATCCTCCTGTTCA+TGG | 0.315738 | tig0003231:-2123 | Msa1339320:CDS |
| CAGAACAAAGAAGTGGAAAA+TGG | 0.318162 | tig0003231:-2245 | Msa1339320:CDS |
| TGAACTTGGTATTTGGGAAT+TGG | 0.319345 | tig0003231:-145 | Msa1339320:CDS |
| CGTTGGTCATCGTTGTTGTT+GGG | 0.319437 | tig0003231:-319 | Msa1339320:CDS |
| GGCGGATATGGAGGAGATTA+TGG | 0.320851 | tig0003231:-1110 | Msa1339320:CDS |
| GTATTTGGGAATTGGATCTA+AGG | 0.340045 | tig0003231:-137 | Msa1339320:CDS |
| AGGACCTGAACTTGGTATTT+GGG | 0.353750 | tig0003231:-151 | Msa1339320:CDS |
| GCTCCTGTTCCTTCTTCTGC+AGG | 0.365248 | tig0003231:-2144 | Msa1339320:CDS |
| AATATTGATGGAAAGGATAA+AGG | 0.372577 | tig0003231:-171 | Msa1339320:CDS |
| GTTGCTTATCAAGGCGGATA+TGG | 0.373448 | tig0003231:-1122 | Msa1339320:CDS |
| TGCTCGAACATGGAAGATTC+AGG | 0.412128 | tig0003231:-286 | Msa1339320:CDS |
| AAATTATTTGATGGGTCAAA+TGG | 0.418906 | tig0003231:+2521 | None:intergenic |
| ATGGAACAACCTCTTCTATC+AGG | 0.419335 | tig0003231:-2388 | Msa1339320:intron |
| ACGTTGGTCATCGTTGTTGT+TGG | 0.419460 | tig0003231:-320 | Msa1339320:CDS |
| TATGAGCATGTGGGTCGAAC+AGG | 0.420593 | tig0003231:-2216 | Msa1339320:CDS |
| TACCCTGGTGGAAATATTGA+TGG | 0.431134 | tig0003231:-183 | Msa1339320:CDS |
| TCAACACTTACACAAGTTCC+AGG | 0.435269 | tig0003231:+2183 | None:intergenic |
| GTTACTATCCTCCTGTTCAT+GGG | 0.438066 | tig0003231:-2122 | Msa1339320:CDS |
| CTGTAGGGTACAAATAGAAA+AGG | 0.448232 | tig0003231:+105 | None:intergenic |
| AGAACGGTGTATTATATATG+TGG | 0.450894 | tig0003231:+2448 | None:intergenic |
| GAAGTTATTGAGAAATGCTC+AGG | 0.463765 | tig0003231:-54 | None:intergenic |
| TGGATACGTTTATAGAAGAA+AGG | 0.466452 | tig0003231:-230 | Msa1339320:CDS |
| TGAATCTTCCATGTTCGAGC+AGG | 0.474774 | tig0003231:+288 | None:intergenic |
| CGAACAGGTTCTGCATATCC+TGG | 0.475291 | tig0003231:-2201 | Msa1339320:CDS |
| GAACGGTGTATTATATATGT+GGG | 0.481216 | tig0003231:+2449 | None:intergenic |
| ATACCTTCGGAATTCAGGTC+TGG | 0.486171 | tig0003231:+1082 | None:intergenic |
| TTCTCAATAACTTCAGAATG+AGG | 0.490617 | tig0003231:+63 | None:intergenic |
| TCAATATTTCCACCAGGGTA+TGG | 0.494935 | tig0003231:+186 | None:intergenic |
| GTGCAAGCGGTTGCTTATCA+AGG | 0.497954 | tig0003231:-1131 | Msa1339320:CDS |
| TAACCTGCAGAAGAAGGAAC+AGG | 0.501782 | tig0003231:+2141 | None:intergenic |
| GAAGACTGTAATGTTTATGT+TGG | 0.506847 | tig0003231:-258 | Msa1339320:CDS |
| TCATCTGAGCCTGATCCTGC+TGG | 0.515267 | tig0003231:-2087 | Msa1339320:intron |
| GGATAGTAACCTGCAGAAGA+AGG | 0.515742 | tig0003231:+2135 | None:intergenic |
| ATCCACTTATAGGGAAACCT+TGG | 0.516020 | tig0003231:-376 | Msa1339320:intron |
| CTAAACTATCTTAACCATCA+TGG | 0.519678 | tig0003231:-2407 | Msa1339320:exon |
| AAGGATAAAGGACCTGAACT+TGG | 0.524416 | tig0003231:-159 | Msa1339320:CDS |
| TAGAAGAGGTTGTTCCATGA+TGG | 0.529006 | tig0003231:+2393 | None:intergenic |
| TTACTATCCTCCTGTTCATG+GGG | 0.529196 | tig0003231:-2121 | Msa1339320:CDS |
| ATTGATATGAGTATTGTAAA+CGG | 0.532254 | tig0003231:+2558 | None:intergenic |
| AAGAACATACCAGCAGGATC+AGG | 0.534132 | tig0003231:+2078 | None:intergenic |
| TGTAGGGTACAAATAGAAAA+GGG | 0.540231 | tig0003231:+106 | None:intergenic |
| TCGTATCTCTACTTCATCCA+AGG | 0.540313 | tig0003231:+359 | None:intergenic |
| TGGTGGAAATATTGATGGAA+AGG | 0.543305 | tig0003231:-178 | Msa1339320:CDS |
| GTTGGTCATCGTTGTTGTTG+GGG | 0.543611 | tig0003231:-318 | Msa1339320:CDS |
| GATAAATCAGAACAAAGAAG+TGG | 0.545722 | tig0003231:-2252 | Msa1339320:intron |
| GGATACGTTTATAGAAGAAA+GGG | 0.547661 | tig0003231:-229 | Msa1339320:CDS |
| AATTCCCAAATACCAAGTTC+AGG | 0.553284 | tig0003231:+147 | None:intergenic |
| TTTCCATCAATATTTCCACC+AGG | 0.579726 | tig0003231:+180 | None:intergenic |
| ATGGAGCTCATATGAGCATG+TGG | 0.588921 | tig0003231:-2226 | Msa1339320:CDS |
| ATTACCCGTTGCAGTGCAAG+CGG | 0.589006 | tig0003231:-1144 | Msa1339320:intron |
| GAAATTGTACCTGATAGAAG+AGG | 0.599830 | tig0003231:+2379 | None:intergenic |
| GCTTATCAAGGCGGATATGG+AGG | 0.600674 | tig0003231:-1119 | Msa1339320:CDS |
| TTCCATCAATATTTCCACCA+GGG | 0.602904 | tig0003231:+181 | None:intergenic |
| GAATCTTCCATGTTCGAGCA+GGG | 0.608319 | tig0003231:+289 | None:intergenic |
| TACTATCCTCCTGTTCATGG+GGG | 0.610681 | tig0003231:-2120 | Msa1339320:CDS |
| TAATGTTTATGTTGGAACGC+TGG | 0.633236 | tig0003231:-250 | Msa1339320:CDS |
| AAAGAGACAGAGCCATACCC+TGG | 0.641609 | tig0003231:-198 | Msa1339320:CDS |
| AGAGACCAAATTATTGAGAA+CGG | 0.644594 | tig0003231:+2432 | None:intergenic |
| GAACCAGACCTGAATTCCGA+AGG | 0.656715 | tig0003231:-1085 | Msa1339320:intron |
| TGGAGCTCATATGAGCATGT+GGG | 0.669407 | tig0003231:-2225 | Msa1339320:CDS |
| GAGACAGAGCCATACCCTGG+TGG | 0.678375 | tig0003231:-195 | Msa1339320:CDS |
| GAGCTGCTCATTGATCACGT+TGG | 0.698946 | tig0003231:-336 | Msa1339320:CDS |
| CAAGCGGTTGCTTATCAAGG+CGG | 0.703834 | tig0003231:-1128 | Msa1339320:CDS |
| TCTTCCATGTTCGAGCAGGG+CGG | 0.712512 | tig0003231:+292 | None:intergenic |
| GGATATGGAGGAGATTATGG+TGG | 0.714179 | tig0003231:-1107 | Msa1339320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATTATAAAAATTATTTGAT+GGG | + | tig0003231:103-122 | None:intergenic | 10.0% |
| !!! | AAATTAGATTATTATTTTCA+AGG | - | tig0003231:2099-2118 | Msa1339320:CDS | 10.0% |
| !! | GGATTATAAAAATTATTTGA+TGG | + | tig0003231:104-123 | None:intergenic | 15.0% |
| !!! | TCATTAAGGAATTAAAATTT+TGG | + | tig0003231:125-144 | None:intergenic | 15.0% |
| !! | AAATTATTCATACTATCATA+AGG | - | tig0003231:786-805 | Msa1339320:intron | 15.0% |
| !! | AATTCTAATCTAATTTGATT+GGG | + | tig0003231:1898-1917 | None:intergenic | 15.0% |
| !! | TAATTCTAATCTAATTTGAT+TGG | + | tig0003231:1899-1918 | None:intergenic | 15.0% |
| !! | ATTAGATTAGAATTAAGATT+AGG | - | tig0003231:1904-1923 | Msa1339320:intron | 15.0% |
| !!! | AAAGAACTTTTAATCATAAA+GGG | + | tig0003231:2168-2187 | None:intergenic | 15.0% |
| !!! | TAAAGAACTTTTAATCATAA+AGG | + | tig0003231:2169-2188 | None:intergenic | 15.0% |
| !!! | ATCATAAGGAATTAGAATTT+TGG | - | tig0003231:800-819 | Msa1339320:intron | 20.0% |
| !! | AGACATATCAATAGTTAATT+TGG | + | tig0003231:921-940 | None:intergenic | 20.0% |
| !! | ATTAACTATTGATATGTCTA+AGG | - | tig0003231:922-941 | Msa1339320:intron | 20.0% |
| !! | AAGGTGAAGTATAAATATTA+TGG | + | tig0003231:950-969 | None:intergenic | 20.0% |
| !! | GAGATAAATGATCATAAATA+AGG | - | tig0003231:1157-1176 | Msa1339320:intron | 20.0% |
| !! | TACTTAATTCATGTTTAAGT+AGG | - | tig0003231:1333-1352 | Msa1339320:intron | 20.0% |
| !! | ACTTAATTCATGTTTAAGTA+GGG | - | tig0003231:1334-1353 | Msa1339320:intron | 20.0% |
| !! | TGATCAATAATCTTATCAAA+TGG | - | tig0003231:2211-2230 | Msa1339320:CDS | 20.0% |
| !! | AAATTATTTGATGGGTCAAA+TGG | + | tig0003231:95-114 | None:intergenic | 25.0% |
| ! | TTGAGTTAACTTTGTCATTA+AGG | + | tig0003231:139-158 | None:intergenic | 25.0% |
| !!! | TTGTATCATGATTTTGATTC+TGG | - | tig0003231:322-341 | Msa1339320:CDS | 25.0% |
| !!! | TGTATCATGATTTTGATTCT+GGG | - | tig0003231:323-342 | Msa1339320:CDS | 25.0% |
| !! | CTCTTTTCAATTATGATCAT+TGG | - | tig0003231:583-602 | Msa1339320:intron | 25.0% |
| ! | ATAAACCAATATTGTTACCA+AGG | - | tig0003231:645-664 | Msa1339320:intron | 25.0% |
| !! | TAAAACCTTGGTAACAATAT+TGG | + | tig0003231:653-672 | None:intergenic | 25.0% |
| ! | CAAAAATAGAAGAAACATGA+AGG | - | tig0003231:1115-1134 | Msa1339320:CDS | 25.0% |
| ! | GATCATAAATAAGGAAGAAT+TGG | - | tig0003231:1166-1185 | Msa1339320:intron | 25.0% |
| ! | CTTAATTCATGTTTAAGTAG+GGG | - | tig0003231:1335-1354 | Msa1339320:intron | 25.0% |
| ! | TTAATTCATGTTTAAGTAGG+GGG | - | tig0003231:1336-1355 | Msa1339320:intron | 25.0% |
| ! | AAGTTAAGTAATCATACCTT+CGG | + | tig0003231:1547-1566 | None:intergenic | 25.0% |
| ! | CTAATTTCATGATCTATTAC+TGG | + | tig0003231:2086-2105 | None:intergenic | 25.0% |
| ! | ATTATTGATCAATATAGTGC+TGG | + | tig0003231:2202-2221 | None:intergenic | 25.0% |
| ! | AATATTGATGGAAAGGATAA+AGG | - | tig0003231:2442-2461 | Msa1339320:five_prime_UTR | 25.0% |
| GAACGGTGTATTATATATGT+GGG | + | tig0003231:167-186 | None:intergenic | 30.0% | |
| AGAACGGTGTATTATATATG+TGG | + | tig0003231:168-187 | None:intergenic | 30.0% | |
| ATACACCGTTCTCAATAATT+TGG | - | tig0003231:176-195 | Msa1339320:CDS | 30.0% | |
| AGAGACCAAATTATTGAGAA+CGG | + | tig0003231:184-203 | None:intergenic | 30.0% | |
| CTAAACTATCTTAACCATCA+TGG | - | tig0003231:206-225 | Msa1339320:CDS | 30.0% | |
| GATAAATCAGAACAAAGAAG+TGG | - | tig0003231:361-380 | Msa1339320:CDS | 30.0% | |
| !!! | TTGGTTTTGACTTTGTGTTA+TGG | - | tig0003231:602-621 | Msa1339320:intron | 30.0% |
| !!! | TTTTGACTTTGTGTTATGGT+TGG | - | tig0003231:606-625 | Msa1339320:intron | 30.0% |
| TTGGTTTATTGAACATTTCC+AGG | + | tig0003231:634-653 | None:intergenic | 30.0% | |
| !!! | GTTACCAAGGTTTTAAATAG+TGG | - | tig0003231:658-677 | Msa1339320:intron | 30.0% |
| AAGCTATCAAATATCCTGAA+TGG | + | tig0003231:1077-1096 | None:intergenic | 30.0% | |
| ! | ATTCAGGATATTTGATAGCT+TGG | - | tig0003231:1076-1095 | Msa1339320:intron | 30.0% |
| ATGAAGGACAAATGACTTAT+AGG | - | tig0003231:1131-1150 | Msa1339320:CDS | 30.0% | |
| GAATTGGAGAAAAACAGTAT+CGG | - | tig0003231:1182-1201 | Msa1339320:intron | 30.0% | |
| AAAAGCTAGAAACTCTCTAT+TGG | + | tig0003231:1407-1426 | None:intergenic | 30.0% | |
| ! | CATGATGGTATCTAATTTTG+TGG | - | tig0003231:1625-1644 | Msa1339320:intron | 30.0% |
| !! | TCTGAAAGAAGTATTAGTTG+TGG | - | tig0003231:1656-1675 | Msa1339320:intron | 30.0% |
| GGTTTCATTCTACAATGATA+TGG | - | tig0003231:1677-1696 | Msa1339320:intron | 30.0% | |
| ACAATGATATGGACCATAAT+AGG | - | tig0003231:1688-1707 | Msa1339320:intron | 30.0% | |
| CAATGATATGGACCATAATA+GGG | - | tig0003231:1689-1708 | Msa1339320:intron | 30.0% | |
| CCAAAGTGAAATTAAGAACA+GGG | + | tig0003231:1791-1810 | None:intergenic | 30.0% | |
| ACCAAAGTGAAATTAAGAAC+AGG | + | tig0003231:1792-1811 | None:intergenic | 30.0% | |
| TGAGCAGAAGATTATATTTG+AGG | - | tig0003231:1859-1878 | Msa1339320:intron | 30.0% | |
| ! | CTGCTTATTATTTGAAGTGT+TGG | - | tig0003231:1963-1982 | Msa1339320:intron | 30.0% |
| !! | ATTATTTTCAAGGCTTGTTC+TGG | - | tig0003231:2109-2128 | Msa1339320:CDS | 30.0% |
| AAATGGCTAATCCACTTATA+GGG | - | tig0003231:2228-2247 | Msa1339320:CDS | 30.0% | |
| GAAGACTGTAATGTTTATGT+TGG | - | tig0003231:2355-2374 | Msa1339320:intron | 30.0% | |
| TGGATACGTTTATAGAAGAA+AGG | - | tig0003231:2383-2402 | Msa1339320:intron | 30.0% | |
| GGATACGTTTATAGAAGAAA+GGG | - | tig0003231:2384-2403 | Msa1339320:intron | 30.0% | |
| TGTAGGGTACAAATAGAAAA+GGG | + | tig0003231:2510-2529 | None:intergenic | 30.0% | |
| ! | TTTTCTATTTGTACCCTACA+GGG | - | tig0003231:2510-2529 | Msa1339320:five_prime_UTR | 30.0% |
| TTCTCAATAACTTCAGAATG+AGG | + | tig0003231:2553-2572 | None:intergenic | 30.0% | |
| GAAATTGTACCTGATAGAAG+AGG | + | tig0003231:237-256 | None:intergenic | 35.0% | |
| ATTTGGAGAACATTGTGATG+AGG | + | tig0003231:271-290 | None:intergenic | 35.0% | |
| CAGAACAAAGAAGTGGAAAA+TGG | - | tig0003231:368-387 | Msa1339320:intron | 35.0% | |
| ! | TCAGCCACTATTTAAAACCT+TGG | + | tig0003231:665-684 | None:intergenic | 35.0% |
| !!! | AAGGTTTTAAATAGTGGCTG+AGG | - | tig0003231:664-683 | Msa1339320:intron | 35.0% |
| AGGACAAATGACTTATAGGA+AGG | - | tig0003231:1135-1154 | Msa1339320:intron | 35.0% | |
| CTTGATTGTTACACAATACG+CGG | - | tig0003231:1265-1284 | Msa1339320:intron | 35.0% | |
| !! | CAATGTCTTTTGAAAGTGTG+AGG | - | tig0003231:1381-1400 | Msa1339320:intron | 35.0% |
| ! | TGCAACGGGTAATGTATTTT+AGG | + | tig0003231:1462-1481 | None:intergenic | 35.0% |
| TAATCATACCTTCGGAATTC+AGG | + | tig0003231:1539-1558 | None:intergenic | 35.0% | |
| AATTAACGTCTGCCCTATTA+TGG | + | tig0003231:1704-1723 | None:intergenic | 35.0% | |
| CCCTGTTCTTAATTTCACTT+TGG | - | tig0003231:1788-1807 | Msa1339320:intron | 35.0% | |
| ! | CTCACTTCTTTTACCGATAA+AGG | + | tig0003231:1818-1837 | None:intergenic | 35.0% |
| GCAGAAGATTATATTTGAGG+CGG | - | tig0003231:1862-1881 | Msa1339320:intron | 35.0% | |
| GATAAACTTCTAATCGTGTG+TGG | - | tig0003231:2028-2047 | Msa1339320:intron | 35.0% | |
| CAAATGGCTAATCCACTTAT+AGG | - | tig0003231:2227-2246 | Msa1339320:CDS | 35.0% | |
| TAATGTTTATGTTGGAACGC+TGG | - | tig0003231:2363-2382 | Msa1339320:intron | 35.0% | |
| TTCCATCAATATTTCCACCA+GGG | + | tig0003231:2435-2454 | None:intergenic | 35.0% | |
| TTTCCATCAATATTTCCACC+AGG | + | tig0003231:2436-2455 | None:intergenic | 35.0% | |
| TGGTGGAAATATTGATGGAA+AGG | - | tig0003231:2435-2454 | Msa1339320:five_prime_UTR | 35.0% | |
| AATTCCCAAATACCAAGTTC+AGG | + | tig0003231:2469-2488 | None:intergenic | 35.0% | |
| TGAACTTGGTATTTGGGAAT+TGG | - | tig0003231:2468-2487 | Msa1339320:five_prime_UTR | 35.0% | |
| GTATTTGGGAATTGGATCTA+AGG | - | tig0003231:2476-2495 | Msa1339320:five_prime_UTR | 35.0% | |
| CTGTAGGGTACAAATAGAAA+AGG | + | tig0003231:2511-2530 | None:intergenic | 35.0% | |
| ! | CTTTTCTATTTGTACCCTAC+AGG | - | tig0003231:2509-2528 | Msa1339320:five_prime_UTR | 35.0% |
| TAGAAGAGGTTGTTCCATGA+TGG | + | tig0003231:223-242 | None:intergenic | 40.0% | |
| ATGGAACAACCTCTTCTATC+AGG | - | tig0003231:225-244 | Msa1339320:CDS | 40.0% | |
| TCAACACTTACACAAGTTCC+AGG | + | tig0003231:433-452 | None:intergenic | 40.0% | |
| GTTACTATCCTCCTGTTCAT+GGG | - | tig0003231:491-510 | Msa1339320:intron | 40.0% | |
| TTACTATCCTCCTGTTCATG+GGG | - | tig0003231:492-511 | Msa1339320:intron | 40.0% | |
| CAACAAAAGAACATACCAGC+AGG | + | tig0003231:544-563 | None:intergenic | 40.0% | |
| ! | TTTGTGTTATGGTTGGTTCC+TGG | - | tig0003231:613-632 | Msa1339320:intron | 40.0% |
| CTGTTACAGTTGTTGCGTTA+CGG | - | tig0003231:712-731 | Msa1339320:intron | 40.0% | |
| AGGTTGCAGATGGGTATATA+AGG | + | tig0003231:969-988 | None:intergenic | 40.0% | |
| AAGAGCAATGGCTGAAGAAT+TGG | + | tig0003231:1052-1071 | None:intergenic | 40.0% | |
| TCCTGAATGGAAAAGAGCAA+TGG | + | tig0003231:1064-1083 | None:intergenic | 40.0% | |
| ! | ATAGCTTGGTGAGAAAAACG+AGG | - | tig0003231:1090-1109 | Msa1339320:CDS | 40.0% |
| ! | CTACCTATACCTTTTTGTCG+CGG | - | tig0003231:1208-1227 | Msa1339320:intron | 40.0% |
| TGAAACTAGACTGTGCATGA+TGG | - | tig0003231:1610-1629 | Msa1339320:intron | 40.0% | |
| TCACTTTGGTCGTCCTTTAT+CGG | - | tig0003231:1802-1821 | Msa1339320:intron | 40.0% | |
| ! | ATATTTGAGGCGGAAAGAAC+AGG | - | tig0003231:1872-1891 | Msa1339320:intron | 40.0% |
| ATCCACTTATAGGGAAACCT+TGG | - | tig0003231:2237-2256 | Msa1339320:CDS | 40.0% | |
| ATCCAAGGTTTCCCTATAAG+TGG | + | tig0003231:2242-2261 | None:intergenic | 40.0% | |
| TCGTATCTCTACTTCATCCA+AGG | + | tig0003231:2257-2276 | None:intergenic | 40.0% | |
| TCAATATTTCCACCAGGGTA+TGG | + | tig0003231:2430-2449 | None:intergenic | 40.0% | |
| TACCCTGGTGGAAATATTGA+TGG | - | tig0003231:2430-2449 | Msa1339320:five_prime_UTR | 40.0% | |
| AAGGATAAAGGACCTGAACT+TGG | - | tig0003231:2454-2473 | Msa1339320:five_prime_UTR | 40.0% | |
| AAGGACCTGAACTTGGTATT+TGG | - | tig0003231:2461-2480 | Msa1339320:five_prime_UTR | 40.0% | |
| AGGACCTGAACTTGGTATTT+GGG | - | tig0003231:2462-2481 | Msa1339320:five_prime_UTR | 40.0% | |
| ATGGAGCTCATATGAGCATG+TGG | - | tig0003231:387-406 | Msa1339320:intron | 45.0% | |
| TGGAGCTCATATGAGCATGT+GGG | - | tig0003231:388-407 | Msa1339320:intron | 45.0% | |
| TAACCTGCAGAAGAAGGAAC+AGG | + | tig0003231:475-494 | None:intergenic | 45.0% | |
| GGATAGTAACCTGCAGAAGA+AGG | + | tig0003231:481-500 | None:intergenic | 45.0% | |
| GGTTACTATCCTCCTGTTCA+TGG | - | tig0003231:490-509 | Msa1339320:intron | 45.0% | |
| TACTATCCTCCTGTTCATGG+GGG | - | tig0003231:493-512 | Msa1339320:intron | 45.0% | |
| AAGAACATACCAGCAGGATC+AGG | + | tig0003231:538-557 | None:intergenic | 45.0% | |
| ! | AGTTGTTGCGTTACGGATTG+TGG | - | tig0003231:719-738 | Msa1339320:intron | 45.0% |
| TGTCAGGGGAATATGCATGA+TGG | - | tig0003231:999-1018 | Msa1339320:intron | 45.0% | |
| ! | CTTTGGGAGCAAATAAGGCT+TGG | + | tig0003231:1026-1045 | None:intergenic | 45.0% |
| ! | GCTGAAGAATTGGCTGCTTT+GGG | + | tig0003231:1042-1061 | None:intergenic | 45.0% |
| ! | GCCATTGCTCTTTTCCATTC+AGG | - | tig0003231:1060-1079 | Msa1339320:intron | 45.0% |
| TGAAAACTGCCGCGACAAAA+AGG | + | tig0003231:1220-1239 | None:intergenic | 45.0% | |
| ! | CGCGGCAGTTTTCATGTTAA+CGG | - | tig0003231:1226-1245 | Msa1339320:intron | 45.0% |
| TGTTACACAATACGCGGTCT+AGG | - | tig0003231:1271-1290 | Msa1339320:intron | 45.0% | |
| GTTGCTTATCAAGGCGGATA+TGG | - | tig0003231:1491-1510 | Msa1339320:intron | 45.0% | |
| GGATATGGAGGAGATTATGG+TGG | - | tig0003231:1506-1525 | Msa1339320:intron | 45.0% | |
| ATACCTTCGGAATTCAGGTC+TGG | + | tig0003231:1534-1553 | None:intergenic | 45.0% | |
| GCTACTCTTCACTTCGTAGT+AGG | - | tig0003231:1998-2017 | Msa1339320:intron | 45.0% | |
| ACGTTGGTCATCGTTGTTGT+TGG | - | tig0003231:2293-2312 | Msa1339320:intron | 45.0% | |
| ! | CGTTGGTCATCGTTGTTGTT+GGG | - | tig0003231:2294-2313 | Msa1339320:intron | 45.0% |
| ! | GTTGGTCATCGTTGTTGTTG+GGG | - | tig0003231:2295-2314 | Msa1339320:intron | 45.0% |
| GAATCTTCCATGTTCGAGCA+GGG | + | tig0003231:2327-2346 | None:intergenic | 45.0% | |
| TGAATCTTCCATGTTCGAGC+AGG | + | tig0003231:2328-2347 | None:intergenic | 45.0% | |
| TGCTCGAACATGGAAGATTC+AGG | - | tig0003231:2327-2346 | Msa1339320:intron | 45.0% | |
| ! | TTTTCACGCACTTCCCTGTA+GGG | + | tig0003231:2526-2545 | None:intergenic | 45.0% |
| !! | ATAAAAATTGAAAATTTATT+TGG | + | tig0003231:288-307 | None:intergenic | 5.0% |
| TATGAGCATGTGGGTCGAAC+AGG | - | tig0003231:397-416 | Msa1339320:intron | 50.0% | |
| CGAACAGGTTCTGCATATCC+TGG | - | tig0003231:412-431 | Msa1339320:intron | 50.0% | |
| AACCTACACCGCGTTTGTCA+GGG | - | tig0003231:984-1003 | Msa1339320:intron | 50.0% | |
| GCATATTCCCCTGACAAACG+CGG | + | tig0003231:995-1014 | None:intergenic | 50.0% | |
| !! | GGCTGCTTTGGGAGCAAATA+AGG | + | tig0003231:1031-1050 | None:intergenic | 50.0% |
| GGCTGAAGAATTGGCTGCTT+TGG | + | tig0003231:1043-1062 | None:intergenic | 50.0% | |
| ! | CTGCCGCGACAAAAAGGTAT+AGG | + | tig0003231:1214-1233 | None:intergenic | 50.0% |
| ATTACCCGTTGCAGTGCAAG+CGG | - | tig0003231:1469-1488 | Msa1339320:intron | 50.0% | |
| GTGCAAGCGGTTGCTTATCA+AGG | - | tig0003231:1482-1501 | Msa1339320:intron | 50.0% | |
| CAAGCGGTTGCTTATCAAGG+CGG | - | tig0003231:1485-1504 | Msa1339320:intron | 50.0% | |
| GCTTATCAAGGCGGATATGG+AGG | - | tig0003231:1494-1513 | Msa1339320:intron | 50.0% | |
| GGCGGATATGGAGGAGATTA+TGG | - | tig0003231:1503-1522 | Msa1339320:intron | 50.0% | |
| GAACCAGACCTGAATTCCGA+AGG | - | tig0003231:1528-1547 | Msa1339320:intron | 50.0% | |
| GAGCTGCTCATTGATCACGT+TGG | - | tig0003231:2277-2296 | Msa1339320:intron | 50.0% | |
| AAAGAGACAGAGCCATACCC+TGG | - | tig0003231:2415-2434 | Msa1339320:five_prime_UTR | 50.0% | |
| ! | CTTTTCACGCACTTCCCTGT+AGG | + | tig0003231:2527-2546 | None:intergenic | 50.0% |
| GCTCCTGTTCCTTCTTCTGC+AGG | - | tig0003231:469-488 | Msa1339320:intron | 55.0% | |
| TCCTCCTGTTCATGGGGGTT+TGG | - | tig0003231:498-517 | Msa1339320:intron | 55.0% | |
| ACCAAACCCCCATGAACAGG+AGG | + | tig0003231:502-521 | None:intergenic | 55.0% | |
| CCAACCAAACCCCCATGAAC+AGG | + | tig0003231:505-524 | None:intergenic | 55.0% | |
| ! | CCTGTTCATGGGGGTTTGGT+TGG | - | tig0003231:502-521 | Msa1339320:intron | 55.0% |
| TCATCTGAGCCTGATCCTGC+TGG | - | tig0003231:526-545 | Msa1339320:intron | 55.0% | |
| ACGCGGTGTAGGTTGCAGAT+GGG | + | tig0003231:978-997 | None:intergenic | 55.0% | |
| AACGCGGTGTAGGTTGCAGA+TGG | + | tig0003231:979-998 | None:intergenic | 55.0% | |
| CAACCTACACCGCGTTTGTC+AGG | - | tig0003231:983-1002 | Msa1339320:intron | 55.0% | |
| ACCTACACCGCGTTTGTCAG+GGG | - | tig0003231:985-1004 | Msa1339320:intron | 55.0% | |
| AGCAACCGCTTGCACTGCAA+CGG | + | tig0003231:1477-1496 | None:intergenic | 55.0% | |
| TCTTCCATGTTCGAGCAGGG+CGG | + | tig0003231:2324-2343 | None:intergenic | 55.0% | |
| TCCCCTGACAAACGCGGTGT+AGG | + | tig0003231:989-1008 | None:intergenic | 60.0% | |
| GCAACCGCTTGCACTGCAAC+GGG | + | tig0003231:1476-1495 | None:intergenic | 60.0% | |
| GAGACAGAGCCATACCCTGG+TGG | - | tig0003231:2418-2437 | Msa1339320:five_prime_UTR | 60.0% | |
| GTAGCCGCCCTGCTCGAACA+TGG | - | tig0003231:2317-2336 | Msa1339320:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003231 | gene | 56 | 2579 | 56 | ID=Msa1339320;Name=Msa1339320 |
| tig0003231 | mRNA | 56 | 2579 | 56 | ID=Msa1339320-mRNA-1;Parent=Msa1339320;Name=Msa1339320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=169|1|0.75|1|1|1|4|0|199 |
| tig0003231 | exon | 56 | 386 | 56 | ID=Msa1339320-mRNA-1:exon:2080;Parent=Msa1339320-mRNA-1 |
| tig0003231 | exon | 1086 | 1152 | 1086 | ID=Msa1339320-mRNA-1:exon:2079;Parent=Msa1339320-mRNA-1 |
| tig0003231 | exon | 2088 | 2264 | 2088 | ID=Msa1339320-mRNA-1:exon:2078;Parent=Msa1339320-mRNA-1 |
| tig0003231 | exon | 2389 | 2579 | 2389 | ID=Msa1339320-mRNA-1:exon:2077;Parent=Msa1339320-mRNA-1 |
| tig0003231 | five_prime_UTR | 2411 | 2579 | 2411 | ID=Msa1339320-mRNA-1:five_prime_utr;Parent=Msa1339320-mRNA-1 |
| tig0003231 | CDS | 2389 | 2410 | 2389 | ID=Msa1339320-mRNA-1:cds;Parent=Msa1339320-mRNA-1 |
| tig0003231 | CDS | 2088 | 2264 | 2088 | ID=Msa1339320-mRNA-1:cds;Parent=Msa1339320-mRNA-1 |
| tig0003231 | CDS | 1086 | 1152 | 1086 | ID=Msa1339320-mRNA-1:cds;Parent=Msa1339320-mRNA-1 |
| tig0003231 | CDS | 56 | 386 | 56 | ID=Msa1339320-mRNA-1:cds;Parent=Msa1339320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
