AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724170 MtrunA17_Chr5g0415261 100.000 306 0 0 1 306 1 306 0.0 642
Msa0724170 MtrunA17_Chr8g0364041 97.386 306 8 0 1 306 1 306 0.0 626
Msa0724170 MtrunA17_Chr8g0378521 80.263 304 60 0 3 306 5 308 0.0 534
Msa0724170 MtrunA17_Chr7g0268381 79.070 301 63 0 6 306 13 313 0.0 522
Msa0724170 MtrunA17_Chr5g0445011 66.118 304 101 2 5 306 2 305 1.21e-152 429
Msa0724170 MtrunA17_Chr1g0165341 55.960 302 132 1 6 306 2 303 6.33e-128 367
Msa0724170 MtrunA17_Chr1g0190121 45.819 299 153 3 4 294 3 300 2.74e-95 285
Msa0724170 MtrunA17_Chr7g0272371 46.154 299 154 3 7 299 10 307 3.65e-95 284
Msa0724170 MtrunA17_Chr5g0436061 46.102 295 152 3 6 294 24 317 3.14e-94 281
Msa0724170 MtrunA17_Chr7g0274931 47.826 276 142 2 20 294 26 300 4.49e-94 281
Msa0724170 MtrunA17_Chr8g0387541 48.679 265 134 2 20 283 27 290 1.59e-93 280
Msa0724170 MtrunA17_Chr1g0186811 48.175 274 140 2 20 292 26 298 1.43e-91 275
Msa0724170 MtrunA17_Chr8g0334361 44.483 290 152 3 7 288 4 292 1.47e-91 274
Msa0724170 MtrunA17_Chr1g0167751 45.804 286 153 2 20 304 26 310 1.95e-91 275
Msa0724170 MtrunA17_Chr4g0025471 39.792 289 160 5 24 298 673 961 5.96e-60 206
Msa0724170 MtrunA17_Chr3g0097231 42.449 245 135 5 50 290 222 464 1.24e-59 197
Msa0724170 MtrunA17_Chr2g0322121 39.932 293 155 8 24 298 668 957 4.57e-58 201
Msa0724170 MtrunA17_Chr2g0330311 37.884 293 170 8 7 290 202 491 1.48e-56 190
Msa0724170 MtrunA17_Chr2g0330331 43.043 230 125 5 49 274 86 313 3.64e-53 177
Msa0724170 MtrunA17_Chr1g0196211 39.106 179 101 4 102 272 2 180 1.84e-35 128
Msa0724170 MtrunA17_Chr8g0369981 32.414 290 141 10 26 262 107 394 1.62e-31 122
Msa0724170 MtrunA17_Chr2g0330011 40.458 131 68 4 17 138 224 353 1.64e-17 82.0
Msa0724170 MtrunA17_Chr1g0196221 47.059 85 39 1 24 102 552 636 3.41e-15 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724170 AT1G10430.2 94.771 306 16 0 1 306 1 306 0.0 617
Msa0724170 AT1G10430.1 94.771 306 16 0 1 306 1 306 0.0 617
Msa0724170 AT1G59830.1 94.444 306 17 0 1 306 1 306 0.0 612
Msa0724170 AT1G69960.1 91.803 305 25 0 2 306 3 307 0.0 599
Msa0724170 AT2G42500.1 80.066 301 60 0 6 306 13 313 0.0 526
Msa0724170 AT3G58500.1 78.571 308 64 1 1 306 6 313 0.0 525
Msa0724170 AT1G59830.2 93.281 253 17 0 1 253 1 253 5.63e-180 497
Msa0724170 AT5G55260.1 66.118 304 101 2 5 306 2 305 3.18e-154 434
Msa0724170 AT4G26720.1 65.461 304 103 2 5 306 2 305 1.35e-153 432
Msa0724170 AT2G42500.2 68.771 301 47 1 6 306 13 266 2.83e-153 430
Msa0724170 AT5G55260.2 58.261 345 101 3 5 306 2 346 1.01e-145 414
Msa0724170 AT3G19980.1 55.960 302 132 1 6 306 2 303 1.76e-127 366
Msa0724170 AT1G50370.1 55.298 302 134 1 6 306 2 303 2.76e-126 363
Msa0724170 AT2G29400.1 47.253 273 143 1 20 292 43 314 7.42e-96 286
Msa0724170 AT2G39840.1 47.119 295 149 3 6 294 21 314 9.84e-96 286
Msa0724170 AT5G27840.1 47.635 296 148 3 1 290 8 302 1.45e-94 283
Msa0724170 AT5G27840.4 47.635 296 148 3 1 290 8 302 2.32e-94 283
Msa0724170 AT5G27840.2 47.635 296 148 3 1 290 8 302 2.46e-94 282
Msa0724170 AT5G27840.3 47.635 296 148 3 1 290 8 302 2.46e-94 282
Msa0724170 AT3G05580.1 47.586 290 145 3 7 290 14 302 2.45e-93 280
Msa0724170 AT1G64040.1 49.434 265 132 2 20 283 27 290 4.04e-93 279
Msa0724170 AT5G43380.1 46.667 285 143 3 7 283 6 289 3.77e-91 275
Msa0724170 AT5G59160.3 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0724170 AT5G59160.2 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0724170 AT5G59160.1 46.350 274 145 2 20 292 36 308 5.54e-91 273
Msa0724170 AT5G43380.2 46.667 285 143 3 7 283 6 289 5.79e-91 274
Msa0724170 AT4G11240.1 47.547 265 137 2 20 283 27 290 6.70e-91 273
Msa0724170 AT5G43380.3 46.667 285 143 3 7 283 6 289 7.30e-91 273
Msa0724170 AT3G46820.1 45.620 274 147 2 20 292 36 308 6.35e-89 268
Msa0724170 AT2G42500.4 73.214 168 40 2 1 163 6 173 3.05e-84 251
Msa0724170 AT2G42500.3 75.625 160 34 2 1 155 6 165 5.09e-83 248
Msa0724170 AT2G42500.5 70.857 175 44 3 1 170 6 178 1.24e-82 247
Msa0724170 AT3G05580.2 49.187 246 118 3 1 240 8 252 4.58e-80 243
Msa0724170 AT2G42810.1 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0724170 AT2G42810.5 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0724170 AT2G42810.4 42.537 268 144 6 31 290 201 466 1.08e-63 209
Msa0724170 AT2G42810.2 42.537 268 144 6 31 290 255 520 4.13e-63 208
Msa0724170 AT2G42810.3 42.537 268 144 6 31 290 254 519 4.45e-63 208
Msa0724170 AT4G03080.1 41.481 270 144 5 24 279 554 823 6.11e-60 205
Msa0724170 AT1G03445.2 41.328 271 142 7 24 279 480 748 1.41e-59 203
Msa0724170 AT1G03445.1 41.328 271 142 7 24 279 480 748 1.69e-59 203
Msa0724170 AT2G27210.2 39.655 290 160 6 24 298 674 963 1.24e-58 202
Msa0724170 AT2G27210.1 39.655 290 160 6 24 298 679 968 1.26e-58 202
Msa0724170 AT1G08420.2 40.741 270 146 5 24 279 685 954 4.40e-58 201
Msa0724170 AT1G08420.1 40.741 270 146 5 24 279 690 959 4.64e-58 201
Msa0724170 AT5G63870.1 32.353 306 142 11 49 291 79 382 1.75e-31 122
Msa0724170 AT5G63870.2 32.353 306 142 11 49 291 79 382 1.75e-31 122
Msa0724170 AT5G63870.3 36.449 214 97 7 49 225 79 290 2.40e-28 111
Msa0724170 AT1G48120.1 32.087 321 148 11 32 283 635 954 1.52e-26 110
Msa0724170 AT5G10900.3 28.514 249 143 9 20 239 191 433 8.31e-19 87.0
Msa0724170 AT5G10900.2 28.514 249 143 9 20 239 191 433 9.42e-19 87.0
Msa0724170 AT5G10900.1 28.514 249 143 9 20 239 191 433 9.71e-19 87.0

Find 118 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATACTAATTATCTCTTTA+TGG 0.113568 5_1:+22455545 Msa0724170:CDS
CTGCTGCTGTCTGTCTTATT+TGG 0.178677 5_1:+22459427 Msa0724170:three_prime_UTR
CCACATCGGTAGCAGTAATT+TGG 0.207567 5_1:-22459140 None:intergenic
TAATGGTTTCTTTATATTAC+TGG 0.239909 5_1:-22455161 None:intergenic
GATGAATGCTTGAGAAAATA+TGG 0.265964 5_1:+22458169 Msa0724170:CDS
AGTGGAGACTGTTTCACTTT+TGG 0.279854 5_1:+22457449 Msa0724170:CDS
ATGGCTGCCATTCTGGAAAT+TGG 0.280680 5_1:+22459167 Msa0724170:CDS
TGGGAATATGGCTGCCATTC+TGG 0.284450 5_1:+22459160 Msa0724170:CDS
GATACTAATTATCTCTTTAT+GGG 0.296309 5_1:+22455546 Msa0724170:CDS
TGCTTAGAAACTGCTGAAAT+AGG 0.300474 5_1:+22459697 Msa0724170:three_prime_UTR
ACTGCTGAAATAGGGAATTA+AGG 0.312707 5_1:+22459706 Msa0724170:three_prime_UTR
CTGCTACCGATGTGGGAATA+TGG 0.319446 5_1:+22459148 Msa0724170:CDS
TGGAGGTCTCTCACCATCTT+TGG 0.327030 5_1:+22458353 Msa0724170:CDS
TCTGGAAATTGGAGAGAATA+TGG 0.342558 5_1:+22459178 Msa0724170:CDS
CATGGAGTGCAAGCCTTTAC+CGG 0.348936 5_1:+22455368 Msa0724170:CDS
TTCAGCAGTTTCTAAGCAAC+AGG 0.350221 5_1:-22459692 None:intergenic
GACTGCCCTCATTGAGAGTC+AGG 0.351563 5_1:+22458243 Msa0724170:CDS
ACCAATTGTGTCGATTCTAT+TGG 0.351694 5_1:-22459458 None:intergenic
ACCGGTGAAGTGTCCGGTTA+CGG 0.359368 5_1:+22455455 Msa0724170:CDS
CCCAGACGATCGTTGTGGTT+GGG 0.364879 5_1:+22458871 Msa0724170:CDS
GGCTCAATTTGCCTTGGAGC+TGG 0.369766 5_1:-22459224 None:intergenic
CCCCAACCACAACGATCGTC+TGG 0.379839 5_1:-22458872 None:intergenic
GAGATAGAATTACAATTCTC+AGG 0.380189 5_1:+22457493 Msa0724170:CDS
CATGCCGTCACACGCGGATC+TGG 0.408264 5_1:+22455326 Msa0724170:exon
ACGGTTTGTGGTGATATTCA+TGG 0.413148 5_1:+22455474 Msa0724170:CDS
CTTACACTTGAGTAATTTGA+CGG 0.424338 5_1:-22457530 None:intergenic
AGAAGATGAAGATGAGGGTT+TGG 0.426868 5_1:-22455233 None:intergenic
CATCTTCTCCGACGAATCTC+CGG 0.433394 5_1:+22455248 Msa0724170:five_prime_UTR
GCTTAGAAACTGCTGAAATA+GGG 0.436312 5_1:+22459698 Msa0724170:three_prime_UTR
GTTTCATTTAAGATTGTGAA+TGG 0.436982 5_1:+22459592 Msa0724170:three_prime_UTR
TTCACATCCGCCTCCGGTAA+AGG 0.440700 5_1:-22455381 None:intergenic
ATATCACCACAAACCGTAAC+CGG 0.441931 5_1:-22455468 None:intergenic
AAGTGTCCGGTTACGGTTTG+TGG 0.441934 5_1:+22455462 Msa0724170:CDS
CCAGACGATCGTTGTGGTTG+GGG 0.450228 5_1:+22458872 Msa0724170:CDS
AATATGGAAATGCCAATGTC+TGG 0.452706 5_1:+22458185 Msa0724170:CDS
CGTGGTGCTGGATATACGTT+TGG 0.454119 5_1:+22458905 Msa0724170:CDS
TTTCACTGTTTAAGTGGTGG+AGG 0.459844 5_1:+22459358 Msa0724170:three_prime_UTR
GGTATATCTCCACGTGGTGC+TGG 0.461540 5_1:+22458893 Msa0724170:CDS
GAGGAGTTTCACTGTTTAAG+TGG 0.462531 5_1:+22459352 Msa0724170:three_prime_UTR
AGAAAGAAGTAACTACATAC+AGG 0.463848 5_1:-22459297 None:intergenic
ACCAATAGAATCGACACAAT+TGG 0.466980 5_1:+22459457 Msa0724170:three_prime_UTR
CGTTCAACCGGTGAAGTGTC+CGG 0.468440 5_1:+22455449 Msa0724170:CDS
ATTATTATGATATCATATCA+TGG 0.469832 5_1:+22459654 Msa0724170:three_prime_UTR
CCGCGCCTTGGATCGCATAC+AGG 0.472606 5_1:+22458392 Msa0724170:CDS
GATCAGTCGGCGACGGTCGC+CGG 0.478360 5_1:-22455267 None:intergenic
TGAGGAATGGAACGTTCAAC+CGG 0.483631 5_1:+22455437 Msa0724170:CDS
GGTGTCTTTCGTGTAGTGTC+AGG 0.485525 5_1:-22459245 None:intergenic
CTCTTTATGGGAGATTATGT+AGG 0.493968 5_1:+22455558 Msa0724170:CDS
GAGCGATTCTTGTTGAGGAA+TGG 0.495521 5_1:+22455424 Msa0724170:CDS
ACCCAGACGATCGTTGTGGT+TGG 0.495708 5_1:+22458870 Msa0724170:CDS
GTGTCAGGCTCAATTTGCCT+TGG 0.498966 5_1:-22459230 None:intergenic
AGCGCCTTCACATCCGCCTC+CGG 0.505019 5_1:-22455387 None:intergenic
GGTAAAGAATTTCCAGACAT+TGG 0.508637 5_1:-22458197 None:intergenic
ATTCTCTCCAATTTCCAGAA+TGG 0.510452 5_1:-22459174 None:intergenic
TCGGATTGGTGGAAATGCTC+CGG 0.512157 5_1:+22455524 Msa0724170:CDS
TCAATATAGGTTCCGCATGA+AGG 0.513509 5_1:+22458821 Msa0724170:intron
AGGTAAATAATCAAACAAAT+CGG 0.517054 5_1:-22458218 None:intergenic
ATAAAGAGATAATTAGTATC+CGG 0.517202 5_1:-22455543 None:intergenic
GCTCAGTTCAATCACACAAA+TGG 0.518477 5_1:+22458941 Msa0724170:CDS
CCAAATTACTGCTACCGATG+TGG 0.523948 5_1:+22459140 Msa0724170:CDS
ACTGGATAATATCCGCGCCT+TGG 0.529586 5_1:+22458380 Msa0724170:CDS
CAAATTACTGCTACCGATGT+GGG 0.532060 5_1:+22459141 Msa0724170:CDS
TTCTTCAGATCCGATGAGAT+CGG 0.533938 5_1:-22455291 None:intergenic
GTGCAAGCCTTTACCGGAGG+CGG 0.534349 5_1:+22455374 Msa0724170:CDS
ATGATATCATATCATGGGTA+GGG 0.536950 5_1:+22459660 Msa0724170:three_prime_UTR
TTGTGAATGGTTACAAGTGC+AGG 0.539078 5_1:+22459605 Msa0724170:three_prime_UTR
TCGGCAGATCGAGAGTCTCA+TGG 0.543255 5_1:+22455350 Msa0724170:CDS
CTCACCATCTTTGGATACAC+TGG 0.543454 5_1:+22458362 Msa0724170:CDS
AGCGAGAGCGATTCTTGTTG+AGG 0.545800 5_1:+22455419 Msa0724170:CDS
TTATCCAGTGTATCCAAAGA+TGG 0.549296 5_1:-22458366 None:intergenic
TATGATATCATATCATGGGT+AGG 0.555001 5_1:+22459659 Msa0724170:three_prime_UTR
GAGTTTCACTGTTTAAGTGG+TGG 0.555690 5_1:+22459355 Msa0724170:three_prime_UTR
TTTACCGGAGGCGGATGTGA+AGG 0.556113 5_1:+22455383 Msa0724170:CDS
TTCACTGTTTAAGTGGTGGA+GGG 0.556999 5_1:+22459359 Msa0724170:three_prime_UTR
CGATCCAGATCCGCGTGTGA+CGG 0.559405 5_1:-22455330 None:intergenic
CAGATCCGCGTGTGACGGCA+TGG 0.561837 5_1:-22455325 None:intergenic
TGCTGGATATACGTTTGGAC+AGG 0.564091 5_1:+22458910 Msa0724170:CDS
ACCGTAACCGGACACTTCAC+CGG 0.565155 5_1:-22455456 None:intergenic
TATCATATCATGGGTAGGGT+TGG 0.569225 5_1:+22459664 Msa0724170:three_prime_UTR
TAGAGCTCATCAGCTTGTGA+TGG 0.570025 5_1:+22458979 Msa0724170:CDS
CGACTGATCTCCGATCTCAT+CGG 0.572969 5_1:+22455281 Msa0724170:five_prime_UTR
CGTCGGAGAAGATGAAGATG+AGG 0.573607 5_1:-22455239 None:intergenic
TTATTATGATATCATATCAT+GGG 0.573643 5_1:+22459655 Msa0724170:three_prime_UTR
AGATAGAATTACAATTCTCA+GGG 0.575342 5_1:+22457494 Msa0724170:CDS
CATAAATTTATGCAGATCGT+GGG 0.576093 5_1:+22457418 Msa0724170:intron
GACGGTCGCCGGAGATTCGT+CGG 0.576191 5_1:-22455256 None:intergenic
GACCAATGTGTGATCTCTTG+TGG 0.576863 5_1:+22458843 Msa0724170:CDS
CGTCACACGCGGATCTGGAT+CGG 0.578779 5_1:+22455331 Msa0724170:CDS
CCCAACCACAACGATCGTCT+GGG 0.580244 5_1:-22458871 None:intergenic
GCTCATCAGCTTGTGATGGA+AGG 0.582864 5_1:+22458983 Msa0724170:CDS
TGCAGTTTGATCCAGCTCCA+AGG 0.585413 5_1:+22459213 Msa0724170:CDS
AACCTCCTGTATGCGATCCA+AGG 0.586881 5_1:-22458397 None:intergenic
TTCAAACCTGACTCTCAATG+AGG 0.590959 5_1:-22458249 None:intergenic
AGGAGGAAGCGGCAATAACA+TGG 0.596625 5_1:+22459497 Msa0724170:three_prime_UTR
TTCAACCATGCCGTCACACG+CGG 0.601853 5_1:+22455320 Msa0724170:exon
CGCCTTGGATCGCATACAGG+AGG 0.602261 5_1:+22458395 Msa0724170:CDS
TCAAACCTGACTCTCAATGA+GGG 0.610004 5_1:-22458248 None:intergenic
TTGTGATGGAAGGATACAAT+TGG 0.613571 5_1:+22458993 Msa0724170:CDS
CTCTCAATGAGGGCAGTCAG+AGG 0.620691 5_1:-22458238 None:intergenic
GGAAGGATACAATTGGTGCC+AGG 0.622019 5_1:+22459000 Msa0724170:CDS
CGATGAGATCGGAGATCAGT+CGG 0.627267 5_1:-22455280 None:intergenic
GTCGGAGAAGATGAAGATGA+GGG 0.631325 5_1:-22455238 None:intergenic
TGACACTACACGAAAGACAC+CGG 0.642789 5_1:+22459247 Msa0724170:CDS
GATCGGAGATCAGTCGGCGA+CGG 0.650816 5_1:-22455274 None:intergenic
GAAAGAAGTAACTACATACA+GGG 0.653211 5_1:-22459296 None:intergenic
AGATTGAATTCAAAGAAGAG+AGG 0.657155 5_1:+22455092 Msa0724170:five_prime_UTR
TCACACATTGGTCCTTCATG+CGG 0.659593 5_1:-22458833 None:intergenic
TCACAATCTTAAATGAAACA+TGG 0.668124 5_1:-22459588 None:intergenic
CCTGTATGCGATCCAAGGCG+CGG 0.673253 5_1:-22458392 None:intergenic
GGAGTGCAAGCCTTTACCGG+AGG 0.673342 5_1:+22455371 Msa0724170:CDS
TGGCAGCCATATTCCCACAT+CGG 0.677796 5_1:-22459154 None:intergenic
AGATCGTGGGTACTATTCAG+TGG 0.679198 5_1:+22457431 Msa0724170:intron
TCTGACCCAGACGATCGTTG+TGG 0.702404 5_1:+22458866 Msa0724170:CDS
AACGTATATCCAGCACCACG+TGG 0.705317 5_1:-22458902 None:intergenic
CAATCTTAAATGAAACATGG+TGG 0.707013 5_1:-22459585 None:intergenic
GATAGAATTACAATTCTCAG+GGG 0.726280 5_1:+22457495 Msa0724170:CDS
GACCACAAGAGATCACACAT+TGG 0.731997 5_1:-22458845 None:intergenic
GGTTGGGGTATATCTCCACG+TGG 0.804235 5_1:+22458887 Msa0724170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGGTTAATTTGATTTATTTA+GGG + chr5_1:22455630-22455649 Msa0724170:intron 15.0%
!!! TATATATAGTGTTTTGTTTT+CGG + chr5_1:22455688-22455707 Msa0724170:intron 15.0%
!!! TAAGGTTTGATTTTTTATTT+TGG + chr5_1:22455868-22455887 Msa0724170:intron 15.0%
!!! ATAGTTATTTCAGTTTTATA+AGG + chr5_1:22455984-22456003 Msa0724170:intron 15.0%
!! TATTGAGTTTGATATATTAT+CGG + chr5_1:22456019-22456038 Msa0724170:intron 15.0%
!!! TTTGTAGTTTAATTTTGATA+CGG + chr5_1:22456359-22456378 Msa0724170:intron 15.0%
!! CTATAAATTATAACACAATA+CGG - chr5_1:22456627-22456646 None:intergenic 15.0%
!! TTGAATATAAGAAACATAAA+AGG + chr5_1:22458089-22458108 Msa0724170:intron 15.0%
!!! ACATAAAAGGAATTTTATTT+TGG + chr5_1:22458102-22458121 Msa0724170:intron 15.0%
!! TTAGTATCAAATAATTTACA+TGG - chr5_1:22458463-22458482 None:intergenic 15.0%
!! AGAAATGAAATATTAAATGA+GGG - chr5_1:22458734-22458753 None:intergenic 15.0%
!! ATTATTATGATATCATATCA+TGG + chr5_1:22459654-22459673 Msa0724170:three_prime_UTR 15.0%
!! TTATTATGATATCATATCAT+GGG + chr5_1:22459655-22459674 Msa0724170:three_prime_UTR 15.0%
!! TAATGGTTTCTTTATATTAC+TGG - chr5_1:22455164-22455183 None:intergenic 20.0%
!! ATAAAGAGATAATTAGTATC+CGG - chr5_1:22455546-22455565 None:intergenic 20.0%
!! GATACTAATTATCTCTTTAT+GGG + chr5_1:22455546-22455565 Msa0724170:CDS 20.0%
!!! GAGGTTAATTTGATTTATTT+AGG + chr5_1:22455629-22455648 Msa0724170:intron 20.0%
!!! TTTATTTAGGGTTTGATTAT+TGG + chr5_1:22455642-22455661 Msa0724170:intron 20.0%
!!! TAATTGCTTCTTTTATATGT+TGG + chr5_1:22456102-22456121 Msa0724170:intron 20.0%
!!! TTATGATGTTTTCTGAAAAA+TGG + chr5_1:22456150-22456169 Msa0724170:intron 20.0%
!!! TCTAAAATCAAACATATGAT+TGG - chr5_1:22456418-22456437 None:intergenic 20.0%
!!! ACTTGTCTTTTTATTTTTCT+TGG + chr5_1:22456741-22456760 Msa0724170:intron 20.0%
!!! TTCATGTATGATAGAATTTT+TGG + chr5_1:22456803-22456822 Msa0724170:intron 20.0%
!!! TGGATATACATATCATTTTA+TGG + chr5_1:22456834-22456853 Msa0724170:intron 20.0%
!!! GGATATACATATCATTTTAT+GGG + chr5_1:22456835-22456854 Msa0724170:intron 20.0%
!!! TGTTACTGTAATATATTTTG+AGG + chr5_1:22457221-22457240 Msa0724170:intron 20.0%
!!! GTTACTGTAATATATTTTGA+GGG + chr5_1:22457222-22457241 Msa0724170:intron 20.0%
!! AAATTTATGCCAGAATTATT+AGG - chr5_1:22457407-22457426 None:intergenic 20.0%
!! AGGTAAATAATCAAACAAAT+CGG - chr5_1:22458221-22458240 None:intergenic 20.0%
!! TATTAAATGGCTATTATAAC+TGG + chr5_1:22458427-22458446 Msa0724170:intron 20.0%
!!! TGATACTAAGAACATTTTTA+TGG + chr5_1:22458474-22458493 Msa0724170:intron 20.0%
!! CAGAAATGAAATATTAAATG+AGG - chr5_1:22458735-22458754 None:intergenic 20.0%
!!! ACAATTTTGCTTTTCAATAT+AGG + chr5_1:22458808-22458827 Msa0724170:intron 20.0%
!!! GTCTTTTTTATTACTCTTTT+AGG + chr5_1:22459088-22459107 Msa0724170:intron 20.0%
!! TGAAGTTACAAAAAATAATC+CGG - chr5_1:22459269-22459288 None:intergenic 20.0%
!!! ATTTGTCTTTAAGAAAAAAG+AGG + chr5_1:22459333-22459352 Msa0724170:three_prime_UTR 20.0%
!!! ACAACATAATTCTTTCTTTT+TGG + chr5_1:22459391-22459410 Msa0724170:three_prime_UTR 20.0%
!!! TGGTATTGTATATTTTTGAT+AGG + chr5_1:22459477-22459496 Msa0724170:three_prime_UTR 20.0%
!!! TATTGTATATTTTTGATAGG+AGG + chr5_1:22459480-22459499 Msa0724170:three_prime_UTR 20.0%
! GGATACTAATTATCTCTTTA+TGG + chr5_1:22455545-22455564 Msa0724170:CDS 25.0%
! CCTCAAGAAAACAAAAAATT+AGG - chr5_1:22455613-22455632 None:intergenic 25.0%
!!! CCTAATTTTTTGTTTTCTTG+AGG + chr5_1:22455610-22455629 Msa0724170:intron 25.0%
!!! GTTTGATTATTGGTTTTATG+AGG + chr5_1:22455652-22455671 Msa0724170:intron 25.0%
! AGCTGAATTAGATGTATATA+GGG + chr5_1:22455734-22455753 Msa0724170:intron 25.0%
!! TGTATATAGGGTTTGAATTT+TGG + chr5_1:22455746-22455765 Msa0724170:intron 25.0%
!!! ATTTTGGTTTTGGTATTTCT+TGG + chr5_1:22455762-22455781 Msa0724170:intron 25.0%
!! AGGTGAATTTTATGCATATA+AGG + chr5_1:22455850-22455869 Msa0724170:intron 25.0%
! TTGTTCTTGAGATGAATTAT+TGG + chr5_1:22455897-22455916 Msa0724170:intron 25.0%
!! TGTATTTGAGTCTATTTTGT+TGG + chr5_1:22455928-22455947 Msa0724170:intron 25.0%
!!! TATATGTTGGAGTCTTTTTT+TGG + chr5_1:22456115-22456134 Msa0724170:intron 25.0%
! GTTGTATTTGTTTGACTAAT+TGG + chr5_1:22456192-22456211 Msa0724170:intron 25.0%
! ACAATTCTCCTTTAAACAAA+TGG - chr5_1:22456713-22456732 None:intergenic 25.0%
!!! GTATGATAGAATTTTTGGTT+TGG + chr5_1:22456808-22456827 Msa0724170:intron 25.0%
!!! TAGAATTTTTGGTTTGGAAT+TGG + chr5_1:22456814-22456833 Msa0724170:intron 25.0%
! TAAGTTTGAGCTCAAAAAAT+TGG + chr5_1:22456931-22456950 Msa0724170:intron 25.0%
!!! TCAAAGTGTCTATATTTTGA+CGG + chr5_1:22457109-22457128 Msa0724170:intron 25.0%
! TACTAGATTCAGATGTAATA+AGG + chr5_1:22457284-22457303 Msa0724170:intron 25.0%
! AATTAGATTATTTGCATCTG+TGG + chr5_1:22457366-22457385 Msa0724170:intron 25.0%
! ATTAGATTATTTGCATCTGT+GGG + chr5_1:22457367-22457386 Msa0724170:intron 25.0%
! GAATTATTAGGAAATTGTAG+TGG - chr5_1:22457395-22457414 None:intergenic 25.0%
! CTACAATTTCCTAATAATTC+TGG + chr5_1:22457395-22457414 Msa0724170:intron 25.0%
! AGATAGAATTACAATTCTCA+GGG + chr5_1:22457494-22457513 Msa0724170:CDS 25.0%
! CTTGCTTAAAGTTTAAGAAT+AGG + chr5_1:22457632-22457651 Msa0724170:intron 25.0%
! TAAAACACAAACACAATGAA+TGG - chr5_1:22457683-22457702 None:intergenic 25.0%
! TATATCTTTCTCAGTATTCT+GGG + chr5_1:22457816-22457835 Msa0724170:intron 25.0%
!!! AGTGTTTTAGTGAGTTTTTA+AGG + chr5_1:22457852-22457871 Msa0724170:intron 25.0%
!!! ATTTGTTTTCTTACCATTTC+AGG + chr5_1:22458134-22458153 Msa0724170:intron 25.0%
!!! ATAAAAAAGGTGTTAGACAA+TGG - chr5_1:22458314-22458333 None:intergenic 25.0%
! CAGAAAATCTGCAATAAAAA+AGG - chr5_1:22458327-22458346 None:intergenic 25.0%
! ATGAATCAATCTAAGTGTTA+CGG - chr5_1:22459034-22459053 None:intergenic 25.0%
!! ACTTAGATTGATTCATTTCA+AGG + chr5_1:22459038-22459057 Msa0724170:intron 25.0%
! TCACAATCTTAAATGAAACA+TGG - chr5_1:22459591-22459610 None:intergenic 25.0%
!! GTTTCATTTAAGATTGTGAA+TGG + chr5_1:22459592-22459611 Msa0724170:three_prime_UTR 25.0%
AGATTGAATTCAAAGAAGAG+AGG + chr5_1:22455092-22455111 Msa0724170:five_prime_UTR 30.0%
! ATGATCTGATTGAGCTTTTT+CGG + chr5_1:22455505-22455524 Msa0724170:CDS 30.0%
!!! TAGTGTTTTGTTTTCGGTTT+TGG + chr5_1:22455694-22455713 Msa0724170:intron 30.0%
!! TTTTCGGTTTTGGTGATTTT+TGG + chr5_1:22455704-22455723 Msa0724170:intron 30.0%
GAGCTGAATTAGATGTATAT+AGG + chr5_1:22455733-22455752 Msa0724170:intron 30.0%
!!! TAGGGTTTGAATTTTGGTTT+TGG + chr5_1:22455752-22455771 Msa0724170:intron 30.0%
TTGGTATTTCTTGGTTTATG+AGG + chr5_1:22455771-22455790 Msa0724170:intron 30.0%
AGGTGAATTTGATGCATATA+GGG + chr5_1:22455791-22455810 Msa0724170:intron 30.0%
!!! TTGGAGTCTTTTTTTGGAAA+GGG + chr5_1:22456121-22456140 Msa0724170:intron 30.0%
!!! TGGAAATTGCTGTTTTTAGT+TGG + chr5_1:22456170-22456189 Msa0724170:intron 30.0%
TAATCCATATAACACTGTCA+GGG - chr5_1:22456514-22456533 None:intergenic 30.0%
TTAATCCATATAACACTGTC+AGG - chr5_1:22456515-22456534 None:intergenic 30.0%
!!! ATCCTCATTTTTTCAGATCT+TGG + chr5_1:22456674-22456693 Msa0724170:intron 30.0%
AACCAAGATCTGAAAAAATG+AGG - chr5_1:22456679-22456698 None:intergenic 30.0%
!! GTTATGTGCCATTTGTTTAA+AGG + chr5_1:22456702-22456721 Msa0724170:intron 30.0%
TGTGCAACACAATTAAGAAA+CGG + chr5_1:22456901-22456920 Msa0724170:intron 30.0%
!!! ATGTTTTAAGTTTGTGTGAG+TGG + chr5_1:22456992-22457011 Msa0724170:intron 30.0%
! CTTGTATGAGAGGATTTTAT+AGG + chr5_1:22457055-22457074 Msa0724170:intron 30.0%
AGTGACATATGTTTGTATTG+AGG + chr5_1:22457185-22457204 Msa0724170:intron 30.0%
!! CTGTAATATATTTTGAGGGA+AGG + chr5_1:22457226-22457245 Msa0724170:intron 30.0%
CTTAACAACTTCAATATCTG+AGG + chr5_1:22457257-22457276 Msa0724170:intron 30.0%
CATAAATTTATGCAGATCGT+GGG + chr5_1:22457418-22457437 Msa0724170:intron 30.0%
GAGATAGAATTACAATTCTC+AGG + chr5_1:22457493-22457512 Msa0724170:CDS 30.0%
GATAGAATTACAATTCTCAG+GGG + chr5_1:22457495-22457514 Msa0724170:CDS 30.0%
CTTACACTTGAGTAATTTGA+CGG - chr5_1:22457533-22457552 None:intergenic 30.0%
AACACAATGAATGGAGTAAT+TGG - chr5_1:22457674-22457693 None:intergenic 30.0%
! TGTGTTTTATAACTTTCTGC+TGG + chr5_1:22457694-22457713 Msa0724170:intron 30.0%
TTTACATTGAGATAGATGGA+TGG - chr5_1:22457722-22457741 None:intergenic 30.0%
GAACTTTACATTGAGATAGA+TGG - chr5_1:22457726-22457745 None:intergenic 30.0%
TCTCAATGTAAAGTTCAATG+CGG + chr5_1:22457730-22457749 Msa0724170:intron 30.0%
CTATATCTTTCTCAGTATTC+TGG + chr5_1:22457815-22457834 Msa0724170:intron 30.0%
TACAAGTGAAACATCATATC+TGG + chr5_1:22457942-22457961 Msa0724170:intron 30.0%
!! TTTTCTTACCATTTCAGGTA+TGG + chr5_1:22458139-22458158 Msa0724170:intron 30.0%
GATGAATGCTTGAGAAAATA+TGG + chr5_1:22458169-22458188 Msa0724170:CDS 30.0%
! GAGGTTTGTGTGTTATTAAA+TGG + chr5_1:22458414-22458433 Msa0724170:intron 30.0%
GGGAAAAAAGATCTTTAACT+TGG - chr5_1:22458510-22458529 None:intergenic 30.0%
!!! ATCTTTTTTCCCCTAAAGTA+TGG + chr5_1:22458518-22458537 Msa0724170:intron 30.0%
ACTTTGCATACCATACTTTA+GGG - chr5_1:22458531-22458550 None:intergenic 30.0%
TACTTTGCATACCATACTTT+AGG - chr5_1:22458532-22458551 None:intergenic 30.0%
! GTTGTCTGCATTTTTCTTTT+TGG + chr5_1:22458638-22458657 Msa0724170:intron 30.0%
TGAATCAATCTAAGTGTTAC+GGG - chr5_1:22459033-22459052 None:intergenic 30.0%
GAAAGAAGTAACTACATACA+GGG - chr5_1:22459299-22459318 None:intergenic 30.0%
AGAAAGAAGTAACTACATAC+AGG - chr5_1:22459300-22459319 None:intergenic 30.0%
!! ATATTTTTGATAGGAGGAAG+CGG + chr5_1:22459486-22459505 Msa0724170:three_prime_UTR 30.0%
CAATCTTAAATGAAACATGG+TGG - chr5_1:22459588-22459607 None:intergenic 30.0%
TATGATATCATATCATGGGT+AGG + chr5_1:22459659-22459678 Msa0724170:three_prime_UTR 30.0%
ATGATATCATATCATGGGTA+GGG + chr5_1:22459660-22459679 Msa0724170:three_prime_UTR 30.0%
!!! ACGATGCGTTTTGAGAATAA+TGG - chr5_1:22455181-22455200 None:intergenic 35.0%
CTCTTTATGGGAGATTATGT+AGG + chr5_1:22455558-22455577 Msa0724170:CDS 35.0%
GAGGTGAATTTGATGCATAT+AGG + chr5_1:22455790-22455809 Msa0724170:intron 35.0%
! TGCATATAGGGTGTGATTTT+TGG + chr5_1:22455803-22455822 Msa0724170:intron 35.0%
!! TGGTGATGTTTGCTTTTATG+AGG + chr5_1:22455830-22455849 Msa0724170:intron 35.0%
!!! GTTGGTTTTTGATGAGTGTT+TGG + chr5_1:22455946-22455965 Msa0724170:intron 35.0%
!!! GTTGGAGTCTTTTTTTGGAA+AGG + chr5_1:22456120-22456139 Msa0724170:intron 35.0%
TGATATGTAGTCAGCTAGTT+TGG + chr5_1:22456294-22456313 Msa0724170:intron 35.0%
TTTACCCTGACAGTGTTATA+TGG + chr5_1:22456507-22456526 Msa0724170:intron 35.0%
GAAATGGTCAAGATTTAGTC+AGG - chr5_1:22456601-22456620 None:intergenic 35.0%
TAACACAATACGGACAGAAA+TGG - chr5_1:22456617-22456636 None:intergenic 35.0%
AATCATTCCAACAGAAAAGC+AGG - chr5_1:22456773-22456792 None:intergenic 35.0%
TTCTTAATTGTGTTGCACAC+CGG - chr5_1:22456900-22456919 None:intergenic 35.0%
GTGCAACACAATTAAGAAAC+GGG + chr5_1:22456902-22456921 Msa0724170:intron 35.0%
TGCAACACAATTAAGAAACG+GGG + chr5_1:22456903-22456922 Msa0724170:intron 35.0%
GAACTTGAAACTTGTATGAG+AGG + chr5_1:22457045-22457064 Msa0724170:intron 35.0%
!! TATTTTGAGGGAAGGTTATG+AGG + chr5_1:22457234-22457253 Msa0724170:intron 35.0%
! ATGTAATAAGGTGCCAACTT+TGG + chr5_1:22457296-22457315 Msa0724170:intron 35.0%
AGAATGGTTATAGCCAAAGT+TGG - chr5_1:22457312-22457331 None:intergenic 35.0%
GCATAAATTTATGCAGATCG+TGG + chr5_1:22457417-22457436 Msa0724170:intron 35.0%
CTCAATGTAAAGTTCAATGC+GGG + chr5_1:22457731-22457750 Msa0724170:intron 35.0%
TCAATGTAAAGTTCAATGCG+GGG + chr5_1:22457732-22457751 Msa0724170:intron 35.0%
AGAAAGAGTTGTAAAGTGTG+TGG + chr5_1:22457881-22457900 Msa0724170:intron 35.0%
!! AATGGATAGTGGTTTTACCA+AGG + chr5_1:22457906-22457925 Msa0724170:intron 35.0%
!! ATGGATAGTGGTTTTACCAA+GGG + chr5_1:22457907-22457926 Msa0724170:intron 35.0%
TACACAATAGCACATTCACT+CGG - chr5_1:22457981-22458000 None:intergenic 35.0%
AATAACAGATTGGCATTCAC+AGG - chr5_1:22458026-22458045 None:intergenic 35.0%
TGTGAATGCCAATCTGTTAT+TGG + chr5_1:22458025-22458044 Msa0724170:intron 35.0%
! ATGCCAATCTGTTATTGGTT+TGG + chr5_1:22458030-22458049 Msa0724170:intron 35.0%
!! TGCCAATCTGTTATTGGTTT+GGG + chr5_1:22458031-22458050 Msa0724170:intron 35.0%
ATCCCAAACCAATAACAGAT+TGG - chr5_1:22458036-22458055 None:intergenic 35.0%
! GGTTTGGGATGATATGAAAT+TGG + chr5_1:22458046-22458065 Msa0724170:intron 35.0%
AATATGGAAATGCCAATGTC+TGG + chr5_1:22458185-22458204 Msa0724170:CDS 35.0%
GGTAAAGAATTTCCAGACAT+TGG - chr5_1:22458200-22458219 None:intergenic 35.0%
! TTGCAGATTTTCTGTTTGCA+TGG + chr5_1:22458333-22458352 Msa0724170:intron 35.0%
TTATCCAGTGTATCCAAAGA+TGG - chr5_1:22458369-22458388 None:intergenic 35.0%
CTTTGCATACCATACTTTAG+GGG - chr5_1:22458530-22458549 None:intergenic 35.0%
GAAACATGAAACATCCAAAG+AGG - chr5_1:22458712-22458731 None:intergenic 35.0%
ATATATCCAGTCAACCTCTA+CGG - chr5_1:22458775-22458794 None:intergenic 35.0%
! TTGTGATGGAAGGATACAAT+TGG + chr5_1:22458993-22459012 Msa0724170:CDS 35.0%
!! ACTCTTTTAGGAGAAGAATG+TGG + chr5_1:22459100-22459119 Msa0724170:intron 35.0%
ATTCTCTCCAATTTCCAGAA+TGG - chr5_1:22459177-22459196 None:intergenic 35.0%
TCTGGAAATTGGAGAGAATA+TGG + chr5_1:22459178-22459197 Msa0724170:CDS 35.0%
ACCAATAGAATCGACACAAT+TGG + chr5_1:22459457-22459476 Msa0724170:three_prime_UTR 35.0%
!! ACCAATTGTGTCGATTCTAT+TGG - chr5_1:22459461-22459480 None:intergenic 35.0%
TGCTTAGAAACTGCTGAAAT+AGG + chr5_1:22459697-22459716 Msa0724170:three_prime_UTR 35.0%
GCTTAGAAACTGCTGAAATA+GGG + chr5_1:22459698-22459717 Msa0724170:three_prime_UTR 35.0%
AGAAGATGAAGATGAGGGTT+TGG - chr5_1:22455236-22455255 None:intergenic 40.0%
TTCTTCAGATCCGATGAGAT+CGG - chr5_1:22455294-22455313 None:intergenic 40.0%
ATATCACCACAAACCGTAAC+CGG - chr5_1:22455471-22455490 None:intergenic 40.0%
ACGGTTTGTGGTGATATTCA+TGG + chr5_1:22455474-22455493 Msa0724170:CDS 40.0%
!!! CTGATTGAGCTTTTTCGGAT+TGG + chr5_1:22455510-22455529 Msa0724170:CDS 40.0%
!!! ATTGAGCTTTTTCGGATTGG+TGG + chr5_1:22455513-22455532 Msa0724170:CDS 40.0%
!!! AGGGTGTGATTTTTGGTTCT+TGG + chr5_1:22455810-22455829 Msa0724170:intron 40.0%
!!! TCGGTGTTGTGTTCGAATTT+TGG + chr5_1:22456038-22456057 Msa0724170:intron 40.0%
ATTCCAACAGAAAAGCAGGA+GGG - chr5_1:22456769-22456788 None:intergenic 40.0%
CCAGTAAGCGAATCAAAGAA+TGG - chr5_1:22457328-22457347 None:intergenic 40.0%
! CCATTCTTTGATTCGCTTAC+TGG + chr5_1:22457325-22457344 Msa0724170:intron 40.0%
! AGTGGAGACTGTTTCACTTT+TGG + chr5_1:22457449-22457468 Msa0724170:CDS 40.0%
CAATGTAAAGTTCAATGCGG+GGG + chr5_1:22457733-22457752 Msa0724170:intron 40.0%
AATGTAAAGTTCAATGCGGG+GGG + chr5_1:22457734-22457753 Msa0724170:intron 40.0%
GTTGTAAAGTGTGTGGTGAA+TGG + chr5_1:22457888-22457907 Msa0724170:intron 40.0%
TTGTGTAGACGTGAATTACG+TGG + chr5_1:22457994-22458013 Msa0724170:intron 40.0%
CGTAGAAACCATACCTGAAA+TGG - chr5_1:22458150-22458169 None:intergenic 40.0%
TCAAACCTGACTCTCAATGA+GGG - chr5_1:22458251-22458270 None:intergenic 40.0%
TTCAAACCTGACTCTCAATG+AGG - chr5_1:22458252-22458271 None:intergenic 40.0%
! CAGATTTTCTGTTTGCATGG+AGG + chr5_1:22458336-22458355 Msa0724170:intron 40.0%
! AAGCAAAATTGTCACTTGCC+AGG - chr5_1:22458800-22458819 None:intergenic 40.0%
TCAATATAGGTTCCGCATGA+AGG + chr5_1:22458821-22458840 Msa0724170:intron 40.0%
GCTCAGTTCAATCACACAAA+TGG + chr5_1:22458941-22458960 Msa0724170:CDS 40.0%
CAAATTACTGCTACCGATGT+GGG + chr5_1:22459141-22459160 Msa0724170:CDS 40.0%
GAGGAGTTTCACTGTTTAAG+TGG + chr5_1:22459352-22459371 Msa0724170:three_prime_UTR 40.0%
GAGTTTCACTGTTTAAGTGG+TGG + chr5_1:22459355-22459374 Msa0724170:three_prime_UTR 40.0%
TTTCACTGTTTAAGTGGTGG+AGG + chr5_1:22459358-22459377 Msa0724170:three_prime_UTR 40.0%
! TTCACTGTTTAAGTGGTGGA+GGG + chr5_1:22459359-22459378 Msa0724170:three_prime_UTR 40.0%
TTGTGAATGGTTACAAGTGC+AGG + chr5_1:22459605-22459624 Msa0724170:three_prime_UTR 40.0%
TATCATATCATGGGTAGGGT+TGG + chr5_1:22459664-22459683 Msa0724170:three_prime_UTR 40.0%
TTCAGCAGTTTCTAAGCAAC+AGG - chr5_1:22459695-22459714 None:intergenic 40.0%
GTCGGAGAAGATGAAGATGA+GGG - chr5_1:22455241-22455260 None:intergenic 45.0%
GAGCGATTCTTGTTGAGGAA+TGG + chr5_1:22455424-22455443 Msa0724170:CDS 45.0%
TGAGGAATGGAACGTTCAAC+CGG + chr5_1:22455437-22455456 Msa0724170:CDS 45.0%
TTCCAACAGAAAAGCAGGAG+GGG - chr5_1:22456768-22456787 None:intergenic 45.0%
CATTCCAACAGAAAAGCAGG+AGG - chr5_1:22456770-22456789 None:intergenic 45.0%
TGCAGTTACTATCACACCGT+AGG + chr5_1:22456860-22456879 Msa0724170:intron 45.0%
GCAGTTACTATCACACCGTA+GGG + chr5_1:22456861-22456880 Msa0724170:intron 45.0%
CAGTTACTATCACACCGTAG+GGG + chr5_1:22456862-22456881 Msa0724170:intron 45.0%
AGTTACTATCACACCGTAGG+GGG + chr5_1:22456863-22456882 Msa0724170:intron 45.0%
AGATCGTGGGTACTATTCAG+TGG + chr5_1:22457431-22457450 Msa0724170:intron 45.0%
!! GGAGACTGTTTCACTTTTGG+TGG + chr5_1:22457452-22457471 Msa0724170:CDS 45.0%
ATGTAAAGTTCAATGCGGGG+GGG + chr5_1:22457735-22457754 Msa0724170:intron 45.0%
CAGTATTCTGGGTGATGTTG+TGG + chr5_1:22457827-22457846 Msa0724170:intron 45.0%
AGTGTGTGGTGAATGGATAG+TGG + chr5_1:22457895-22457914 Msa0724170:intron 45.0%
TGTTTCACTTGTACGCTCCA+TGG - chr5_1:22457935-22457954 None:intergenic 45.0%
CTCACCATCTTTGGATACAC+TGG + chr5_1:22458362-22458381 Msa0724170:CDS 45.0%
! AACCTCTACGGCATGGTTTT+AGG - chr5_1:22458763-22458782 None:intergenic 45.0%
GGTTGACTGGATATATTGCC+TGG + chr5_1:22458779-22458798 Msa0724170:intron 45.0%
TCACACATTGGTCCTTCATG+CGG - chr5_1:22458836-22458855 None:intergenic 45.0%
GACCAATGTGTGATCTCTTG+TGG + chr5_1:22458843-22458862 Msa0724170:CDS 45.0%
GACCACAAGAGATCACACAT+TGG - chr5_1:22458848-22458867 None:intergenic 45.0%
TGCTGGATATACGTTTGGAC+AGG + chr5_1:22458910-22458929 Msa0724170:CDS 45.0%
TAGAGCTCATCAGCTTGTGA+TGG + chr5_1:22458979-22458998 Msa0724170:CDS 45.0%
CCACATCGGTAGCAGTAATT+TGG - chr5_1:22459143-22459162 None:intergenic 45.0%
CCAAATTACTGCTACCGATG+TGG + chr5_1:22459140-22459159 Msa0724170:CDS 45.0%
! ATGGCTGCCATTCTGGAAAT+TGG + chr5_1:22459167-22459186 Msa0724170:CDS 45.0%
TGACACTACACGAAAGACAC+CGG + chr5_1:22459247-22459266 Msa0724170:CDS 45.0%
! CTGCTGCTGTCTGTCTTATT+TGG + chr5_1:22459427-22459446 Msa0724170:three_prime_UTR 45.0%
CGTCGGAGAAGATGAAGATG+AGG - chr5_1:22455242-22455261 None:intergenic 50.0%
CATCTTCTCCGACGAATCTC+CGG + chr5_1:22455248-22455267 Msa0724170:five_prime_UTR 50.0%
CGATGAGATCGGAGATCAGT+CGG - chr5_1:22455283-22455302 None:intergenic 50.0%
CGACTGATCTCCGATCTCAT+CGG + chr5_1:22455281-22455300 Msa0724170:five_prime_UTR 50.0%
CATGGAGTGCAAGCCTTTAC+CGG + chr5_1:22455368-22455387 Msa0724170:CDS 50.0%
AGCGAGAGCGATTCTTGTTG+AGG + chr5_1:22455419-22455438 Msa0724170:CDS 50.0%
AAGTGTCCGGTTACGGTTTG+TGG + chr5_1:22455462-22455481 Msa0724170:CDS 50.0%
!! TCGGATTGGTGGAAATGCTC+CGG + chr5_1:22455524-22455543 Msa0724170:CDS 50.0%
TCCAACAGAAAAGCAGGAGG+GGG - chr5_1:22456767-22456786 None:intergenic 50.0%
TATCACACCGTAGGGGGTTA+GGG + chr5_1:22456869-22456888 Msa0724170:intron 50.0%
!!! TGGTTTTACCAAGGGCACCA+TGG + chr5_1:22457915-22457934 Msa0724170:intron 50.0%
TGGAGGTCTCTCACCATCTT+TGG + chr5_1:22458353-22458372 Msa0724170:CDS 50.0%
ACTGGATAATATCCGCGCCT+TGG + chr5_1:22458380-22458399 Msa0724170:CDS 50.0%
AACCTCCTGTATGCGATCCA+AGG - chr5_1:22458400-22458419 None:intergenic 50.0%
GAGGCATAGAGCACATGGTA+AGG - chr5_1:22458693-22458712 None:intergenic 50.0%
! CCAAAGAGGCATAGAGCACA+TGG - chr5_1:22458698-22458717 None:intergenic 50.0%
CCATGTGCTCTATGCCTCTT+TGG + chr5_1:22458695-22458714 Msa0724170:intron 50.0%
TGCCTAAAACCATGCCGTAG+AGG + chr5_1:22458758-22458777 Msa0724170:intron 50.0%
AACGTATATCCAGCACCACG+TGG - chr5_1:22458905-22458924 None:intergenic 50.0%
! CGTGGTGCTGGATATACGTT+TGG + chr5_1:22458905-22458924 Msa0724170:CDS 50.0%
! GCTCATCAGCTTGTGATGGA+AGG + chr5_1:22458983-22459002 Msa0724170:CDS 50.0%
! GGAAGGATACAATTGGTGCC+AGG + chr5_1:22459000-22459019 Msa0724170:CDS 50.0%
CTGCTACCGATGTGGGAATA+TGG + chr5_1:22459148-22459167 Msa0724170:CDS 50.0%
TGGCAGCCATATTCCCACAT+CGG - chr5_1:22459157-22459176 None:intergenic 50.0%
TGGGAATATGGCTGCCATTC+TGG + chr5_1:22459160-22459179 Msa0724170:CDS 50.0%
TGCAGTTTGATCCAGCTCCA+AGG + chr5_1:22459213-22459232 Msa0724170:CDS 50.0%
GTGTCAGGCTCAATTTGCCT+TGG - chr5_1:22459233-22459252 None:intergenic 50.0%
GGTGTCTTTCGTGTAGTGTC+AGG - chr5_1:22459248-22459267 None:intergenic 50.0%
AGGAGGAAGCGGCAATAACA+TGG + chr5_1:22459497-22459516 Msa0724170:three_prime_UTR 50.0%
TTCAACCATGCCGTCACACG+CGG + chr5_1:22455320-22455339 Msa0724170:exon 55.0%
TCGGCAGATCGAGAGTCTCA+TGG + chr5_1:22455350-22455369 Msa0724170:CDS 55.0%
TTCACATCCGCCTCCGGTAA+AGG - chr5_1:22455384-22455403 None:intergenic 55.0%
TTTACCGGAGGCGGATGTGA+AGG + chr5_1:22455383-22455402 Msa0724170:CDS 55.0%
! CGTTCAACCGGTGAAGTGTC+CGG + chr5_1:22455449-22455468 Msa0724170:CDS 55.0%
! ACCGGTGAAGTGTCCGGTTA+CGG + chr5_1:22455455-22455474 Msa0724170:CDS 55.0%
ACCGTAACCGGACACTTCAC+CGG - chr5_1:22455459-22455478 None:intergenic 55.0%
CTATCACACCGTAGGGGGTT+AGG + chr5_1:22456868-22456887 Msa0724170:intron 55.0%
AAGTTCAATGCGGGGGGGTT+CGG + chr5_1:22457740-22457759 Msa0724170:intron 55.0%
CTCTCAATGAGGGCAGTCAG+AGG - chr5_1:22458241-22458260 None:intergenic 55.0%
GACTGCCCTCATTGAGAGTC+AGG + chr5_1:22458243-22458262 Msa0724170:CDS 55.0%
ACCATGCCGTAGAGGTTGAC+TGG + chr5_1:22458766-22458785 Msa0724170:intron 55.0%
TCCAGTCAACCTCTACGGCA+TGG - chr5_1:22458770-22458789 None:intergenic 55.0%
TCTGACCCAGACGATCGTTG+TGG + chr5_1:22458866-22458885 Msa0724170:CDS 55.0%
ACCCAGACGATCGTTGTGGT+TGG + chr5_1:22458870-22458889 Msa0724170:CDS 55.0%
CCCAACCACAACGATCGTCT+GGG - chr5_1:22458874-22458893 None:intergenic 55.0%
CCCAGACGATCGTTGTGGTT+GGG + chr5_1:22458871-22458890 Msa0724170:CDS 55.0%
CCAGACGATCGTTGTGGTTG+GGG + chr5_1:22458872-22458891 Msa0724170:CDS 55.0%
GGTTGGGGTATATCTCCACG+TGG + chr5_1:22458887-22458906 Msa0724170:CDS 55.0%
GGTATATCTCCACGTGGTGC+TGG + chr5_1:22458893-22458912 Msa0724170:CDS 55.0%
AGTGTTACGGGTCAGTCACC+TGG - chr5_1:22459021-22459040 None:intergenic 55.0%
GGCTCAATTTGCCTTGGAGC+TGG - chr5_1:22459227-22459246 None:intergenic 55.0%
GATCGGAGATCAGTCGGCGA+CGG - chr5_1:22455277-22455296 None:intergenic 60.0%
CGATCCAGATCCGCGTGTGA+CGG - chr5_1:22455333-22455352 None:intergenic 60.0%
CGTCACACGCGGATCTGGAT+CGG + chr5_1:22455331-22455350 Msa0724170:CDS 60.0%
GGAGTGCAAGCCTTTACCGG+AGG + chr5_1:22455371-22455390 Msa0724170:CDS 60.0%
GTGCAAGCCTTTACCGGAGG+CGG + chr5_1:22455374-22455393 Msa0724170:CDS 60.0%
!! GCCCCCTCCTGCTTTTCTGT+TGG + chr5_1:22456763-22456782 Msa0724170:intron 60.0%
TGTACGCTCCATGGTGCCCT+TGG - chr5_1:22457926-22457945 None:intergenic 60.0%
CCTGTATGCGATCCAAGGCG+CGG - chr5_1:22458395-22458414 None:intergenic 60.0%
CGCCTTGGATCGCATACAGG+AGG + chr5_1:22458395-22458414 Msa0724170:CDS 60.0%
CCCCAACCACAACGATCGTC+TGG - chr5_1:22458875-22458894 None:intergenic 60.0%
GACGGTCGCCGGAGATTCGT+CGG - chr5_1:22455259-22455278 None:intergenic 65.0%
CAGATCCGCGTGTGACGGCA+TGG - chr5_1:22455328-22455347 None:intergenic 65.0%
CATGCCGTCACACGCGGATC+TGG + chr5_1:22455326-22455345 Msa0724170:exon 65.0%
AGCGCCTTCACATCCGCCTC+CGG - chr5_1:22455390-22455409 None:intergenic 65.0%
CACACCGTAGGGGGTTAGGG+TGG + chr5_1:22456872-22456891 Msa0724170:intron 65.0%
GGCACCACCCTAACCCCCTA+CGG - chr5_1:22456879-22456898 None:intergenic 65.0%
GTAGGGGGTTAGGGTGGTGC+CGG + chr5_1:22456878-22456897 Msa0724170:intron 65.0%
! CAATGCGGGGGGGTTCGGTT+AGG + chr5_1:22457745-22457764 Msa0724170:intron 65.0%
CCGCGCCTTGGATCGCATAC+AGG + chr5_1:22458392-22458411 Msa0724170:CDS 65.0%
GATCAGTCGGCGACGGTCGC+CGG - chr5_1:22455270-22455289 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 22455082 22459727 22455082 ID=Msa0724170;Name=Msa0724170
chr5_1 mRNA 22455082 22459727 22455082 ID=Msa0724170-mRNA-1;Parent=Msa0724170;Name=Msa0724170-mRNA-1;_AED=0.10;_eAED=0.10;_QI=245|1|1|1|1|1|6|444|306
chr5_1 exon 22455082 22455579 22455082 ID=Msa0724170-mRNA-1:exon:8463;Parent=Msa0724170-mRNA-1
chr5_1 exon 22457433 22457547 22457433 ID=Msa0724170-mRNA-1:exon:8464;Parent=Msa0724170-mRNA-1
chr5_1 exon 22458156 22458264 22458156 ID=Msa0724170-mRNA-1:exon:8465;Parent=Msa0724170-mRNA-1
chr5_1 exon 22458339 22458416 22458339 ID=Msa0724170-mRNA-1:exon:8466;Parent=Msa0724170-mRNA-1
chr5_1 exon 22458830 22459021 22458830 ID=Msa0724170-mRNA-1:exon:8467;Parent=Msa0724170-mRNA-1
chr5_1 exon 22459110 22459727 22459110 ID=Msa0724170-mRNA-1:exon:8468;Parent=Msa0724170-mRNA-1
chr5_1 five_prime_UTR 22455082 22455326 22455082 ID=Msa0724170-mRNA-1:five_prime_utr;Parent=Msa0724170-mRNA-1
chr5_1 CDS 22455327 22455579 22455327 ID=Msa0724170-mRNA-1:cds;Parent=Msa0724170-mRNA-1
chr5_1 CDS 22457433 22457547 22457433 ID=Msa0724170-mRNA-1:cds;Parent=Msa0724170-mRNA-1
chr5_1 CDS 22458156 22458264 22458156 ID=Msa0724170-mRNA-1:cds;Parent=Msa0724170-mRNA-1
chr5_1 CDS 22458339 22458416 22458339 ID=Msa0724170-mRNA-1:cds;Parent=Msa0724170-mRNA-1
chr5_1 CDS 22458830 22459021 22458830 ID=Msa0724170-mRNA-1:cds;Parent=Msa0724170-mRNA-1
chr5_1 CDS 22459110 22459283 22459110 ID=Msa0724170-mRNA-1:cds;Parent=Msa0724170-mRNA-1
chr5_1 three_prime_UTR 22459284 22459727 22459284 ID=Msa0724170-mRNA-1:three_prime_utr;Parent=Msa0724170-mRNA-1
Gene Sequence

>Msa0724170

ATGCCGTCACACGCGGATCTGGATCGGCAGATCGAGAGTCTCATGGAGTGCAAGCCTTTACCGGAGGCGGATGTGAAGGCGCTATGCGATCAAGCGAGAGCGATTCTTGTTGAGGAATGGAACGTTCAACCGGTGAAGTGTCCGGTTACGGTTTGTGGTGATATTCATGGTCAATTTTATGATCTGATTGAGCTTTTTCGGATTGGTGGAAATGCTCCGGATACTAATTATCTCTTTATGGGAGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTTTCACTTTTGGTGGCACTGAAAGTACGCTATAGAGATAGAATTACAATTCTCAGGGGAAATCATGAGAGCCGTCAAATTACTCAAGTGTATGGTTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTGGATAATATCCGCGCCTTGGATCGCATACAGGAGGTTCCGCATGAAGGACCAATGTGTGATCTCTTGTGGTCTGACCCAGACGATCGTTGTGGTTGGGGTATATCTCCACGTGGTGCTGGATATACGTTTGGACAGGATATAGCTGCTCAGTTCAATCACACAAATGGTCTCTCGCTGATATCTAGAGCTCATCAGCTTGTGATGGAAGGATACAATTGGTGCCAGGAGAAGAATGTGGTGACTGTTTTTAGTGCTCCAAATTACTGCTACCGATGTGGGAATATGGCTGCCATTCTGGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCAAGGCAAATTGAGCCTGACACTACACGAAAGACACCGGATTATTTTTTGTAA

Protein sequence

>Msa0724170

MPSHADLDRQIESLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*