Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401950 | XP_003592575.1 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 6.84e-79 | 253 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401950 | G7IAV5 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 3.27e-79 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa1401950 | 0.808506 | 2.995844e-50 | -8.615850e-47 |
| Msa0038870 | Msa1401950 | 0.814220 | 1.721543e-51 | -8.615850e-47 |
| Msa0043860 | Msa1401950 | 0.800939 | 1.139096e-48 | -8.615850e-47 |
| Msa0056270 | Msa1401950 | 0.803980 | 2.689947e-49 | -8.615850e-47 |
| Msa0086420 | Msa1401950 | 0.804268 | 2.344215e-49 | -8.615850e-47 |
| Msa0095770 | Msa1401950 | 0.801722 | 7.873418e-49 | -8.615850e-47 |
| Msa1352890 | Msa1401950 | 0.807292 | 5.429329e-50 | -8.615850e-47 |
| Msa1370590 | Msa1401950 | 0.805283 | 1.438772e-49 | -8.615850e-47 |
| Msa1389850 | Msa1401950 | 0.804351 | 2.252570e-49 | -8.615850e-47 |
| Msa1401950 | Msa1416260 | 0.806366 | 8.519228e-50 | -8.615850e-47 |
| Msa1401950 | Msa1450310 | 0.821458 | 3.995058e-53 | -8.615850e-47 |
| Msa1401950 | Msa1458290 | 0.801213 | 1.000982e-48 | -8.615850e-47 |
| Msa0610250 | Msa1401950 | 0.806312 | 8.746090e-50 | -8.615850e-47 |
| Msa0656960 | Msa1401950 | 0.808128 | 3.606432e-50 | -8.615850e-47 |
| Msa0659790 | Msa1401950 | 0.807515 | 4.867654e-50 | -8.615850e-47 |
| Msa0726080 | Msa1401950 | 0.815305 | 9.893850e-52 | -8.615850e-47 |
| Msa0743530 | Msa1401950 | 0.812469 | 4.173599e-51 | -8.615850e-47 |
| Msa0786750 | Msa1401950 | 0.821207 | 4.564015e-53 | -8.615850e-47 |
| Msa0822170 | Msa1401950 | 0.827246 | 1.738958e-54 | -8.615850e-47 |
| Msa0822180 | Msa1401950 | 0.806366 | 8.519228e-50 | -8.615850e-47 |
| Msa0829220 | Msa1401950 | 0.834356 | 3.142672e-56 | -8.615850e-47 |
| Msa0190590 | Msa1401950 | 0.809620 | 1.729112e-50 | -8.615850e-47 |
| Msa0237200 | Msa1401950 | 0.800310 | 1.530117e-48 | -8.615850e-47 |
| Msa1299340 | Msa1401950 | 0.802541 | 5.342874e-49 | -8.615850e-47 |
| Msa1307180 | Msa1401950 | 0.824492 | 7.839081e-54 | -8.615850e-47 |
| Msa1316360 | Msa1401950 | 0.816125 | 6.495931e-52 | -8.615850e-47 |
| Msa1331350 | Msa1401950 | 0.814810 | 1.274188e-51 | -8.615850e-47 |
| Msa1344310 | Msa1401950 | 0.801814 | 7.538611e-49 | -8.615850e-47 |
| Msa0432500 | Msa1401950 | 0.835075 | 2.072023e-56 | -8.615850e-47 |
| Msa1075970 | Msa1401950 | 0.804365 | 2.237678e-49 | -8.615850e-47 |
| Msa0244980 | Msa1401950 | 0.822173 | 2.728841e-53 | -8.615850e-47 |
| Msa0322240 | Msa1401950 | 0.803996 | 2.670556e-49 | -8.615850e-47 |
| Msa0324240 | Msa1401950 | 0.808550 | 2.931629e-50 | -8.615850e-47 |
| Msa1197070 | Msa1401950 | 0.822208 | 2.678805e-53 | -8.615850e-47 |
| Msa1206650 | Msa1401950 | 0.817562 | 3.091505e-52 | -8.615850e-47 |
| Msa0509120 | Msa1401950 | 0.815779 | 7.761402e-52 | -8.615850e-47 |
| Msa0846230 | Msa1401950 | 0.812182 | 4.821806e-51 | -8.615850e-47 |
| Msa0858440 | Msa1401950 | 0.808420 | 3.124603e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401950 | MtrunA17_Chr1g0208711 | 91.536 | 319 | 27 | 0 | 1 | 319 | 1 | 319 | 6.29e-83 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401950 | AT2G01100.2 | 48.744 | 199 | 93 | 4 | 1 | 199 | 1 | 190 | 6.86e-34 | 125 |
| Msa1401950 | AT2G01100.1 | 48.744 | 199 | 93 | 4 | 1 | 199 | 1 | 190 | 6.86e-34 | 125 |
| Msa1401950 | AT2G01100.3 | 48.744 | 199 | 93 | 4 | 1 | 199 | 1 | 190 | 6.86e-34 | 125 |
Find 53 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACATCTGATTCTGATTATC+AGG | 0.194332 | tig0022796:-1970 | Msa1401950:CDS |
| ACTCTGATGATGAGAGTAAA+AGG | 0.293068 | tig0022796:-2487 | Msa1401950:CDS |
| ACGAAGTCAACAAGAGAAAA+AGG | 0.339357 | tig0022796:-2220 | Msa1401950:CDS |
| GTGATCTCCTATGATGCTTA+TGG | 0.381678 | tig0022796:+2009 | Msa1401950:intergenic |
| GAAGAAAATATTGGAGAGGA+AGG | 0.390822 | tig0022796:-2642 | Msa1401950:CDS |
| GAAGCTGGAAGCTGCTGCCA+AGG | 0.414532 | tig0022796:-2597 | Msa1401950:CDS |
| TTTGAAGTGGGAGCAGAAGC+TGG | 0.424827 | tig0022796:-2612 | Msa1401950:CDS |
| ATTCAAGTTTGTTATAATGA+TGG | 0.435144 | tig0022796:+1838 | Msa1401950:intergenic |
| GAAGGCACCATAAGCATCAT+AGG | 0.439224 | tig0022796:-2016 | Msa1401950:CDS |
| GAAGGAGAAAGAAGAAGCAA+AGG | 0.440557 | tig0022796:-2301 | Msa1401950:CDS |
| CACTAGATTGCGAGTGGCGG+CGG | 0.449752 | tig0022796:+2093 | Msa1401950:intergenic |
| GGAAGCTGCTGCCAAGGCAA+AGG | 0.452183 | tig0022796:-2591 | Msa1401950:CDS |
| TTCAGCATCAGCCTTTGCCT+TGG | 0.462415 | tig0022796:+2580 | Msa1401950:intergenic |
| CCGCTTCTTTGTCTTCCGCT+TGG | 0.469488 | tig0022796:+2382 | Msa1401950:intergenic |
| GAAGACAAAGAAGCGGTCTT+CGG | 0.488136 | tig0022796:-2375 | Msa1401950:CDS |
| AGCATAAGAATCGGAATCAC+TGG | 0.498286 | tig0022796:+2244 | Msa1401950:intergenic |
| TGTCCAGAGCGTTTATGCAC+TGG | 0.500731 | tig0022796:+1879 | Msa1401950:intergenic |
| AGCTTCTGCTCCCACTTCAA+AGG | 0.506519 | tig0022796:+2614 | Msa1401950:intergenic |
| GGGCTAGTAAAAGATCTCAT+AGG | 0.508850 | tig0022796:-2466 | Msa1401950:CDS |
| AAACCAGTGCATAAACGCTC+TGG | 0.521867 | tig0022796:-1882 | Msa1401950:CDS |
| GAGGAGGAATTAGCTAAGAC+TGG | 0.524826 | tig0022796:-1753 | Msa1401950:CDS |
| CCGATCATCAGAGAAGTCCT+TGG | 0.525943 | tig0022796:-1931 | Msa1401950:CDS |
| GCAGCTCTGAGGAGGAGAGA+AGG | 0.526452 | tig0022796:-2319 | Msa1401950:CDS |
| GATGCTTATGGTGCCTTCTG+TGG | 0.527702 | tig0022796:+2021 | Msa1401950:intergenic |
| GATCACATGATACAGAGGTT+AGG | 0.528727 | tig0022796:-1992 | Msa1401950:CDS |
| GACTTCGTCAGCATAAGAAT+CGG | 0.530959 | tig0022796:+2235 | Msa1401950:intergenic |
| CTCTGATGATGAGAGTAAAA+GGG | 0.536453 | tig0022796:-2486 | Msa1401950:CDS |
| AACAAGCTGCATGAACCGCT+TGG | 0.536708 | tig0022796:+2676 | Msa1401950:intergenic |
| GGAAGGAAGCTCCTTTGAAG+TGG | 0.539988 | tig0022796:-2625 | Msa1401950:CDS |
| CCAAGGACTTCTCTGATGAT+CGG | 0.546465 | tig0022796:+1931 | Msa1401950:intergenic |
| TATAATGATGGCGGCGGTGA+TGG | 0.554188 | tig0022796:+1850 | Msa1401950:intergenic |
| TCAGATCGGAAGAGAGGTCA+TGG | 0.565374 | tig0022796:-2131 | Msa1401950:CDS |
| AAGCATTCTCACATTGACTC+TGG | 0.568109 | tig0022796:-2434 | Msa1401950:CDS |
| ATGAAAGTGATGATATTCAC+AGG | 0.568814 | tig0022796:-2052 | Msa1401950:CDS |
| GATTCTGATTATCAGGGTCG+TGG | 0.571788 | tig0022796:-1963 | Msa1401950:CDS |
| CAAGTTTGTTATAATGATGG+CGG | 0.573095 | tig0022796:+1841 | Msa1401950:intergenic |
| AAAAGAAGAAAATATTGGAG+AGG | 0.578009 | tig0022796:-2646 | Msa1401950:CDS |
| ATCTGAAAGCAGCTCTGAGG+AGG | 0.584163 | tig0022796:-2327 | Msa1401950:CDS |
| TAACAAACTTGAATACCACT+TGG | 0.586097 | tig0022796:-1829 | Msa1401950:CDS |
| GTTTGTTATAATGATGGCGG+CGG | 0.587426 | tig0022796:+1844 | Msa1401950:intergenic |
| ACATCTGATTCTGATTATCA+GGG | 0.599493 | tig0022796:-1969 | Msa1401950:CDS |
| GAAGGAAGCTCCTTTGAAGT+GGG | 0.601553 | tig0022796:-2624 | Msa1401950:CDS |
| GCGGTTCATGCAGCTTGTTG+AGG | 0.609325 | tig0022796:-2672 | Msa1401950:CDS |
| AGATTTCTATAGTGACGAAG+AGG | 0.614614 | tig0022796:-2159 | Msa1401950:CDS |
| TCTGATTATCAGGGTCGTGG+TGG | 0.626264 | tig0022796:-1960 | Msa1401950:CDS |
| AACAAATGGAAAGCATGAGG+AGG | 0.638640 | tig0022796:-1769 | Msa1401950:CDS |
| ACAGGAAGAGAAGCCACAGA+AGG | 0.641194 | tig0022796:-2034 | Msa1401950:CDS |
| CAGATTCACTAGATTGCGAG+TGG | 0.650396 | tig0022796:+2087 | Msa1401950:intergenic |
| GATTTCTCTCGTCAACCAAG+TGG | 0.662858 | tig0022796:+1814 | Msa1401950:intergenic |
| ATTCACTAGATTGCGAGTGG+CGG | 0.666042 | tig0022796:+2090 | Msa1401950:intergenic |
| TGAATCTGAAAGCAGCTCTG+AGG | 0.683084 | tig0022796:-2330 | Msa1401950:CDS |
| TAGGAGATCACATGATACAG+AGG | 0.686401 | tig0022796:-1997 | Msa1401950:CDS |
| CCAAGCGGAAGACAAAGAAG+CGG | 0.705691 | tig0022796:-2382 | Msa1401950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTCAAGTTTGTTATAATGA+TGG | + | tig0022796:2594-2613 | Msa1401950:intergenic | 20.0% |
| !!! | ATTCAAGTTTGTTATAATGA+TGG | + | tig0022796:2594-2613 | Msa1401950:intergenic | 20.0% |
| ! | GGAGAAAAAGAAGAAAATAT+TGG | - | tig0022796:1778-1797 | Msa1401950:CDS | 25.0% |
| ! | AAAAGAAGAAAATATTGGAG+AGG | - | tig0022796:1783-1802 | Msa1401950:CDS | 25.0% |
| ! | GCAAAACATAAAAAAAGATC+AGG | - | tig0022796:1896-1915 | Msa1401950:CDS | 25.0% |
| !! | TCTGAATCACTAAATTTTGA+TGG | + | tig0022796:2253-2272 | Msa1401950:intergenic | 25.0% |
| ! | GGAGAAAAAGAAGAAAATAT+TGG | - | tig0022796:1778-1797 | Msa1401950:CDS | 25.0% |
| ! | AAAAGAAGAAAATATTGGAG+AGG | - | tig0022796:1783-1802 | Msa1401950:CDS | 25.0% |
| ! | GCAAAACATAAAAAAAGATC+AGG | - | tig0022796:1896-1915 | Msa1401950:CDS | 25.0% |
| !! | TCTGAATCACTAAATTTTGA+TGG | + | tig0022796:2253-2272 | Msa1401950:intergenic | 25.0% |
| ATGAAAGTGATGATATTCAC+AGG | - | tig0022796:2377-2396 | Msa1401950:CDS | 30.0% | |
| ACATCTGATTCTGATTATCA+GGG | - | tig0022796:2460-2479 | Msa1401950:CDS | 30.0% | |
| !! | CAAGTTTGTTATAATGATGG+CGG | + | tig0022796:2591-2610 | Msa1401950:intergenic | 30.0% |
| TAACAAACTTGAATACCACT+TGG | - | tig0022796:2600-2619 | Msa1401950:CDS | 30.0% | |
| !! | TCATGCTTTCCATTTGTTTT+TGG | + | tig0022796:2658-2677 | Msa1401950:intergenic | 30.0% |
| ! | AAAAACAAATGGAAAGCATG+AGG | - | tig0022796:2657-2676 | Msa1401950:CDS | 30.0% |
| ATGAAAGTGATGATATTCAC+AGG | - | tig0022796:2377-2396 | Msa1401950:CDS | 30.0% | |
| ACATCTGATTCTGATTATCA+GGG | - | tig0022796:2460-2479 | Msa1401950:CDS | 30.0% | |
| !! | CAAGTTTGTTATAATGATGG+CGG | + | tig0022796:2591-2610 | Msa1401950:intergenic | 30.0% |
| TAACAAACTTGAATACCACT+TGG | - | tig0022796:2600-2619 | Msa1401950:CDS | 30.0% | |
| !! | TCATGCTTTCCATTTGTTTT+TGG | + | tig0022796:2658-2677 | Msa1401950:intergenic | 30.0% |
| ! | AAAAACAAATGGAAAGCATG+AGG | - | tig0022796:2657-2676 | Msa1401950:CDS | 30.0% |
| GAAGAAAATATTGGAGAGGA+AGG | - | tig0022796:1787-1806 | Msa1401950:CDS | 35.0% | |
| ! | ACTCTGATGATGAGAGTAAA+AGG | - | tig0022796:1942-1961 | Msa1401950:CDS | 35.0% |
| ! | CTCTGATGATGAGAGTAAAA+GGG | - | tig0022796:1943-1962 | Msa1401950:CDS | 35.0% |
| ACTCTGGTGATCATGAAAAA+AGG | - | tig0022796:2011-2030 | Msa1401950:CDS | 35.0% | |
| GGAAAGAAAAAAGTTCCAAG+CGG | - | tig0022796:2032-2051 | Msa1401950:CDS | 35.0% | |
| ACGAAGTCAACAAGAGAAAA+AGG | - | tig0022796:2209-2228 | Msa1401950:CDS | 35.0% | |
| AAGTCAACAAGAGAAAAAGG+CGG | - | tig0022796:2212-2231 | Msa1401950:CDS | 35.0% | |
| AGATTTCTATAGTGACGAAG+AGG | - | tig0022796:2270-2289 | Msa1401950:CDS | 35.0% | |
| ! | ACGAAGAGGAATTTTCAGAT+CGG | - | tig0022796:2284-2303 | Msa1401950:CDS | 35.0% |
| GACATCTGATTCTGATTATC+AGG | - | tig0022796:2459-2478 | Msa1401950:CDS | 35.0% | |
| ! | TTCTTCAGAATTTTCGTCCA+AGG | + | tig0022796:2518-2537 | Msa1401950:intergenic | 35.0% |
| !!! | ATTTGTTTTTGGTGAGAGGT+GGG | + | tig0022796:2647-2666 | Msa1401950:intergenic | 35.0% |
| !!! | TTCCATTTGTTTTTGGTGAG+AGG | + | tig0022796:2651-2670 | Msa1401950:intergenic | 35.0% |
| GAAGAAAATATTGGAGAGGA+AGG | - | tig0022796:1787-1806 | Msa1401950:CDS | 35.0% | |
| ! | ACTCTGATGATGAGAGTAAA+AGG | - | tig0022796:1942-1961 | Msa1401950:CDS | 35.0% |
| ! | CTCTGATGATGAGAGTAAAA+GGG | - | tig0022796:1943-1962 | Msa1401950:CDS | 35.0% |
| ACTCTGGTGATCATGAAAAA+AGG | - | tig0022796:2011-2030 | Msa1401950:CDS | 35.0% | |
| GGAAAGAAAAAAGTTCCAAG+CGG | - | tig0022796:2032-2051 | Msa1401950:CDS | 35.0% | |
| ACGAAGTCAACAAGAGAAAA+AGG | - | tig0022796:2209-2228 | Msa1401950:CDS | 35.0% | |
| AAGTCAACAAGAGAAAAAGG+CGG | - | tig0022796:2212-2231 | Msa1401950:CDS | 35.0% | |
| AGATTTCTATAGTGACGAAG+AGG | - | tig0022796:2270-2289 | Msa1401950:CDS | 35.0% | |
| ! | ACGAAGAGGAATTTTCAGAT+CGG | - | tig0022796:2284-2303 | Msa1401950:CDS | 35.0% |
| GACATCTGATTCTGATTATC+AGG | - | tig0022796:2459-2478 | Msa1401950:CDS | 35.0% | |
| ! | TTCTTCAGAATTTTCGTCCA+AGG | + | tig0022796:2518-2537 | Msa1401950:intergenic | 35.0% |
| !!! | ATTTGTTTTTGGTGAGAGGT+GGG | + | tig0022796:2647-2666 | Msa1401950:intergenic | 35.0% |
| !!! | TTCCATTTGTTTTTGGTGAG+AGG | + | tig0022796:2651-2670 | Msa1401950:intergenic | 35.0% |
| ! | GGGCTAGTAAAAGATCTCAT+AGG | - | tig0022796:1963-1982 | Msa1401950:CDS | 40.0% |
| !! | AAGCATTCTCACATTGACTC+TGG | - | tig0022796:1995-2014 | Msa1401950:CDS | 40.0% |
| GAAGGAGAAAGAAGAAGCAA+AGG | - | tig0022796:2128-2147 | Msa1401950:CDS | 40.0% | |
| AGCATAAGAATCGGAATCAC+TGG | + | tig0022796:2188-2207 | Msa1401950:intergenic | 40.0% | |
| GACTTCGTCAGCATAAGAAT+CGG | + | tig0022796:2197-2216 | Msa1401950:intergenic | 40.0% | |
| ! | GAATTTTCAGATCGGAAGAG+AGG | - | tig0022796:2292-2311 | Msa1401950:CDS | 40.0% |
| GTGATCTCCTATGATGCTTA+TGG | + | tig0022796:2423-2442 | Msa1401950:intergenic | 40.0% | |
| TAGGAGATCACATGATACAG+AGG | - | tig0022796:2432-2451 | Msa1401950:CDS | 40.0% | |
| GATCACATGATACAGAGGTT+AGG | - | tig0022796:2437-2456 | Msa1401950:CDS | 40.0% | |
| !! | GTTTGTTATAATGATGGCGG+CGG | + | tig0022796:2588-2607 | Msa1401950:intergenic | 40.0% |
| !!! | TTTGTTTTTGGTGAGAGGTG+GGG | + | tig0022796:2646-2665 | Msa1401950:intergenic | 40.0% |
| !!! | CATTTGTTTTTGGTGAGAGG+TGG | + | tig0022796:2648-2667 | Msa1401950:intergenic | 40.0% |
| CACCTCTCACCAAAAACAAA+TGG | - | tig0022796:2646-2665 | Msa1401950:CDS | 40.0% | |
| ! | AACAAATGGAAAGCATGAGG+AGG | - | tig0022796:2660-2679 | Msa1401950:CDS | 40.0% |
| ! | GGGCTAGTAAAAGATCTCAT+AGG | - | tig0022796:1963-1982 | Msa1401950:CDS | 40.0% |
| !! | AAGCATTCTCACATTGACTC+TGG | - | tig0022796:1995-2014 | Msa1401950:CDS | 40.0% |
| GAAGGAGAAAGAAGAAGCAA+AGG | - | tig0022796:2128-2147 | Msa1401950:CDS | 40.0% | |
| AGCATAAGAATCGGAATCAC+TGG | + | tig0022796:2188-2207 | Msa1401950:intergenic | 40.0% | |
| GACTTCGTCAGCATAAGAAT+CGG | + | tig0022796:2197-2216 | Msa1401950:intergenic | 40.0% | |
| ! | GAATTTTCAGATCGGAAGAG+AGG | - | tig0022796:2292-2311 | Msa1401950:CDS | 40.0% |
| GTGATCTCCTATGATGCTTA+TGG | + | tig0022796:2423-2442 | Msa1401950:intergenic | 40.0% | |
| TAGGAGATCACATGATACAG+AGG | - | tig0022796:2432-2451 | Msa1401950:CDS | 40.0% | |
| GATCACATGATACAGAGGTT+AGG | - | tig0022796:2437-2456 | Msa1401950:CDS | 40.0% | |
| !! | GTTTGTTATAATGATGGCGG+CGG | + | tig0022796:2588-2607 | Msa1401950:intergenic | 40.0% |
| !!! | TTTGTTTTTGGTGAGAGGTG+GGG | + | tig0022796:2646-2665 | Msa1401950:intergenic | 40.0% |
| !!! | CATTTGTTTTTGGTGAGAGG+TGG | + | tig0022796:2648-2667 | Msa1401950:intergenic | 40.0% |
| CACCTCTCACCAAAAACAAA+TGG | - | tig0022796:2646-2665 | Msa1401950:CDS | 40.0% | |
| ! | AACAAATGGAAAGCATGAGG+AGG | - | tig0022796:2660-2679 | Msa1401950:CDS | 40.0% |
| !! | GAAGGAAGCTCCTTTGAAGT+GGG | - | tig0022796:1805-1824 | Msa1401950:CDS | 45.0% |
| GAAGACAAAGAAGCGGTCTT+CGG | - | tig0022796:2054-2073 | Msa1401950:CDS | 45.0% | |
| TGAATCTGAAAGCAGCTCTG+AGG | - | tig0022796:2099-2118 | Msa1401950:CDS | 45.0% | |
| ATTCACTAGATTGCGAGTGG+CGG | + | tig0022796:2342-2361 | Msa1401950:intergenic | 45.0% | |
| CAGATTCACTAGATTGCGAG+TGG | + | tig0022796:2345-2364 | Msa1401950:intergenic | 45.0% | |
| !! | GAAGGCACCATAAGCATCAT+AGG | - | tig0022796:2413-2432 | Msa1401950:CDS | 45.0% |
| GATTCTGATTATCAGGGTCG+TGG | - | tig0022796:2466-2485 | Msa1401950:CDS | 45.0% | |
| CCAAGGACTTCTCTGATGAT+CGG | + | tig0022796:2501-2520 | Msa1401950:intergenic | 45.0% | |
| AAACCAGTGCATAAACGCTC+TGG | - | tig0022796:2547-2566 | Msa1401950:CDS | 45.0% | |
| GATTTCTCTCGTCAACCAAG+TGG | + | tig0022796:2618-2637 | Msa1401950:intergenic | 45.0% | |
| GAGGAGGAATTAGCTAAGAC+TGG | - | tig0022796:2676-2695 | Msa1401950:CDS | 45.0% | |
| !! | GAAGGAAGCTCCTTTGAAGT+GGG | - | tig0022796:1805-1824 | Msa1401950:CDS | 45.0% |
| GAAGACAAAGAAGCGGTCTT+CGG | - | tig0022796:2054-2073 | Msa1401950:CDS | 45.0% | |
| TGAATCTGAAAGCAGCTCTG+AGG | - | tig0022796:2099-2118 | Msa1401950:CDS | 45.0% | |
| ATTCACTAGATTGCGAGTGG+CGG | + | tig0022796:2342-2361 | Msa1401950:intergenic | 45.0% | |
| CAGATTCACTAGATTGCGAG+TGG | + | tig0022796:2345-2364 | Msa1401950:intergenic | 45.0% | |
| !! | GAAGGCACCATAAGCATCAT+AGG | - | tig0022796:2413-2432 | Msa1401950:CDS | 45.0% |
| GATTCTGATTATCAGGGTCG+TGG | - | tig0022796:2466-2485 | Msa1401950:CDS | 45.0% | |
| CCAAGGACTTCTCTGATGAT+CGG | + | tig0022796:2501-2520 | Msa1401950:intergenic | 45.0% | |
| AAACCAGTGCATAAACGCTC+TGG | - | tig0022796:2547-2566 | Msa1401950:CDS | 45.0% | |
| GATTTCTCTCGTCAACCAAG+TGG | + | tig0022796:2618-2637 | Msa1401950:intergenic | 45.0% | |
| GAGGAGGAATTAGCTAAGAC+TGG | - | tig0022796:2676-2695 | Msa1401950:CDS | 45.0% | |
| AACAAGCTGCATGAACCGCT+TGG | + | tig0022796:1756-1775 | None:intergenic | 50.0% | |
| ! | GGAAGGAAGCTCCTTTGAAG+TGG | - | tig0022796:1804-1823 | Msa1401950:CDS | 50.0% |
| AGCTTCTGCTCCCACTTCAA+AGG | + | tig0022796:1818-1837 | Msa1401950:intergenic | 50.0% | |
| ! | TTTGAAGTGGGAGCAGAAGC+TGG | - | tig0022796:1817-1836 | Msa1401950:CDS | 50.0% |
| TTCAGCATCAGCCTTTGCCT+TGG | + | tig0022796:1852-1871 | Msa1401950:intergenic | 50.0% | |
| CCAAGCGGAAGACAAAGAAG+CGG | - | tig0022796:2047-2066 | Msa1401950:CDS | 50.0% | |
| !! | ATCTGAAAGCAGCTCTGAGG+AGG | - | tig0022796:2102-2121 | Msa1401950:CDS | 50.0% |
| ACAAGAGAAAAAGGCGGCAC+AGG | - | tig0022796:2218-2237 | Msa1401950:CDS | 50.0% | |
| TCAGATCGGAAGAGAGGTCA+TGG | - | tig0022796:2298-2317 | Msa1401950:CDS | 50.0% | |
| ACAGGAAGAGAAGCCACAGA+AGG | - | tig0022796:2395-2414 | Msa1401950:CDS | 50.0% | |
| GATGCTTATGGTGCCTTCTG+TGG | + | tig0022796:2411-2430 | Msa1401950:intergenic | 50.0% | |
| TCTGATTATCAGGGTCGTGG+TGG | - | tig0022796:2469-2488 | Msa1401950:CDS | 50.0% | |
| CCGATCATCAGAGAAGTCCT+TGG | - | tig0022796:2498-2517 | Msa1401950:CDS | 50.0% | |
| ! | TGTCCAGAGCGTTTATGCAC+TGG | + | tig0022796:2553-2572 | Msa1401950:intergenic | 50.0% |
| !! | TATAATGATGGCGGCGGTGA+TGG | + | tig0022796:2582-2601 | Msa1401950:intergenic | 50.0% |
| AACAAGCTGCATGAACCGCT+TGG | + | tig0022796:1756-1775 | Msa1401950:intergenic | 50.0% | |
| ! | GGAAGGAAGCTCCTTTGAAG+TGG | - | tig0022796:1804-1823 | Msa1401950:CDS | 50.0% |
| AGCTTCTGCTCCCACTTCAA+AGG | + | tig0022796:1818-1837 | Msa1401950:intergenic | 50.0% | |
| ! | TTTGAAGTGGGAGCAGAAGC+TGG | - | tig0022796:1817-1836 | Msa1401950:CDS | 50.0% |
| TTCAGCATCAGCCTTTGCCT+TGG | + | tig0022796:1852-1871 | Msa1401950:intergenic | 50.0% | |
| CCAAGCGGAAGACAAAGAAG+CGG | - | tig0022796:2047-2066 | Msa1401950:CDS | 50.0% | |
| !! | ATCTGAAAGCAGCTCTGAGG+AGG | - | tig0022796:2102-2121 | Msa1401950:CDS | 50.0% |
| ACAAGAGAAAAAGGCGGCAC+AGG | - | tig0022796:2218-2237 | Msa1401950:CDS | 50.0% | |
| TCAGATCGGAAGAGAGGTCA+TGG | - | tig0022796:2298-2317 | Msa1401950:CDS | 50.0% | |
| ACAGGAAGAGAAGCCACAGA+AGG | - | tig0022796:2395-2414 | Msa1401950:CDS | 50.0% | |
| GATGCTTATGGTGCCTTCTG+TGG | + | tig0022796:2411-2430 | Msa1401950:intergenic | 50.0% | |
| TCTGATTATCAGGGTCGTGG+TGG | - | tig0022796:2469-2488 | Msa1401950:CDS | 50.0% | |
| CCGATCATCAGAGAAGTCCT+TGG | - | tig0022796:2498-2517 | Msa1401950:CDS | 50.0% | |
| ! | TGTCCAGAGCGTTTATGCAC+TGG | + | tig0022796:2553-2572 | Msa1401950:intergenic | 50.0% |
| !! | TATAATGATGGCGGCGGTGA+TGG | + | tig0022796:2582-2601 | Msa1401950:intergenic | 50.0% |
| !! | GCGGTTCATGCAGCTTGTTG+AGG | - | tig0022796:1757-1776 | Msa1401950:CDS | 55.0% |
| CCGCTTCTTTGTCTTCCGCT+TGG | + | tig0022796:2050-2069 | Msa1401950:intergenic | 55.0% | |
| !! | GCGGTTCATGCAGCTTGTTG+AGG | - | tig0022796:1757-1776 | Msa1401950:CDS | 55.0% |
| CCGCTTCTTTGTCTTCCGCT+TGG | + | tig0022796:2050-2069 | Msa1401950:intergenic | 55.0% | |
| GAAGCTGGAAGCTGCTGCCA+AGG | - | tig0022796:1832-1851 | Msa1401950:CDS | 60.0% | |
| GGAAGCTGCTGCCAAGGCAA+AGG | - | tig0022796:1838-1857 | Msa1401950:CDS | 60.0% | |
| !! | GCAGCTCTGAGGAGGAGAGA+AGG | - | tig0022796:2110-2129 | Msa1401950:CDS | 60.0% |
| CACTAGATTGCGAGTGGCGG+CGG | + | tig0022796:2339-2358 | Msa1401950:intergenic | 60.0% | |
| GAAGCTGGAAGCTGCTGCCA+AGG | - | tig0022796:1832-1851 | Msa1401950:CDS | 60.0% | |
| GGAAGCTGCTGCCAAGGCAA+AGG | - | tig0022796:1838-1857 | Msa1401950:CDS | 60.0% | |
| !! | GCAGCTCTGAGGAGGAGAGA+AGG | - | tig0022796:2110-2129 | Msa1401950:CDS | 60.0% |
| CACTAGATTGCGAGTGGCGG+CGG | + | tig0022796:2339-2358 | Msa1401950:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022796 | gene | 1746 | 2705 | 1746 | ID=Msa1401950;Name=Msa1401950 |
| tig0022796 | mRNA | 1746 | 2705 | 1746 | ID=Msa1401950-mRNA-1;Parent=Msa1401950;Name=Msa1401950-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|-1|0|1|-1|1|1|0|319 |
| tig0022796 | exon | 1746 | 2705 | 1746 | ID=Msa1401950-mRNA-1:exon:18675;Parent=Msa1401950-mRNA-1 |
| tig0022796 | CDS | 1746 | 2705 | 1746 | ID=Msa1401950-mRNA-1:cds;Parent=Msa1401950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
