AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0422070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422070 MtrunA17_Chr3g0122971 89.706 340 1 2 1 327 1 319 0.0 598
Msa0422070 MtrunA17_Chr4g0057861 86.145 332 33 1 6 324 5 336 0.0 585
Msa0422070 MtrunA17_Chr6g0458861 81.737 334 48 1 6 326 3 336 0.0 563
Msa0422070 MtrunA17_Chr2g0310421 70.710 338 85 2 2 326 78 414 2.23e-172 484
Msa0422070 MtrunA17_Chr8g0357071 75.494 253 37 3 84 312 56 307 7.81e-127 365
Msa0422070 MtrunA17_Chr3g0144151 45.428 339 163 8 6 325 85 420 7.22e-81 253
Msa0422070 MtrunA17_Chr8g0360951 83.784 148 15 2 167 314 1 139 5.52e-80 239
Msa0422070 MtrunA17_Chr7g0252641 45.181 332 163 6 4 319 67 395 1.60e-77 243
Msa0422070 MtrunA17_Chr2g0316821 83.673 49 8 0 207 255 7 55 1.26e-19 81.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0422070 AT1G13440.1 85.672 335 35 1 3 324 2 336 0.0 591
Msa0422070 AT3G04120.1 85.672 335 35 1 3 324 2 336 0.0 591
Msa0422070 AT1G13440.2 78.209 335 32 2 3 324 2 308 0.0 521
Msa0422070 AT1G79530.1 69.617 339 89 2 2 327 82 419 3.32e-172 484
Msa0422070 AT1G16300.1 69.822 338 88 2 3 327 81 417 2.37e-171 482
Msa0422070 AT1G42970.1 46.018 339 161 8 6 325 81 416 1.81e-87 270
Msa0422070 AT1G12900.3 45.946 333 161 6 3 319 12 341 9.64e-81 249
Msa0422070 AT1G12900.4 45.946 333 161 6 3 319 12 341 9.64e-81 249
Msa0422070 AT1G12900.1 45.946 333 161 6 3 319 61 390 2.72e-80 250
Msa0422070 AT1G12900.5 45.946 333 161 6 3 319 103 432 4.11e-80 251
Msa0422070 AT3G26650.1 44.745 333 165 6 3 319 58 387 3.73e-78 244
Msa0422070 AT1G12900.2 47.212 269 126 4 66 319 41 308 2.75e-64 206

Find 99 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCAAGCTGAAGGGTATTT+TGG 0.162108 3_2:-71185655 Msa0422070:CDS
AGTAGTGTTGAGTTGAAATT+AGG 0.248794 3_2:+71187699 None:intergenic
CCTCTCCAGTCCTTGCTTGA+TGG 0.259153 3_2:+71186086 None:intergenic
ATCTCCAGTGAGACAAAATT+TGG 0.265475 3_2:+71185207 None:intergenic
ACTTTGTGAAACTCGTTTCT+TGG 0.270714 3_2:-71185437 Msa0422070:CDS
GTCAATTTACCGTTCAATAC+TGG 0.280860 3_2:+71185885 None:intergenic
CAGGTTATTAATGACCGATT+TGG 0.281961 3_2:-71186345 Msa0422070:CDS
TATAAACAAATTTAAAAGAT+TGG 0.282177 3_2:+71184945 None:intergenic
CTTGGCAGCTCCAGTGCTGC+TGG 0.294421 3_2:+71186034 None:intergenic
AAAACAGGATTTGGAAGAAT+TGG 0.309904 3_2:-71187436 Msa0422070:intron
GACACTAAGACCCTTCTCTT+TGG 0.356905 3_2:-71187175 Msa0422070:CDS
AAACATAGGTGCATCTTTGC+TGG 0.359553 3_2:+71186551 None:intergenic
ATTCAAAGCAATTCCAGCTT+TGG 0.384329 3_2:+71185464 None:intergenic
ATGACAACGAATGGGGTTAC+AGG 0.389525 3_2:-71185413 Msa0422070:intron
TACAGGTAAATTGTTCTCAA+TGG 0.394899 3_2:+71184857 None:intergenic
GTGGTATCTACTGACTTTAT+TGG 0.395775 3_2:-71185615 Msa0422070:CDS
GAGATTAGAGTGAGGTTTGG+TGG 0.402333 3_2:+71187738 None:intergenic
TCACCCCATGGAATCTCCTC+AGG 0.421872 3_2:+71187010 None:intergenic
GCCACTCAGAAGACTGTTGA+TGG 0.424666 3_2:-71186110 Msa0422070:CDS
AGCAGAAATAACAACCTTCT+TGG 0.437227 3_2:+71186575 None:intergenic
TGGCTTGATGAGTCTGAGCT+TGG 0.438497 3_2:-71185246 Msa0422070:exon
CAGTTGTTGACCTTACTGTA+AGG 0.450759 3_2:-71185827 Msa0422070:CDS
AGCATCTTTGATGCCAAAGC+TGG 0.451793 3_2:-71185477 Msa0422070:CDS
ACTCAACACTACTATCTCAA+TGG 0.452591 3_2:-71187689 Msa0422070:exon
GATTGTCCACATTGCTTCTG+TGG 0.453352 3_2:-71185266 Msa0422070:CDS
GACCGATTTGGAATCGTTGA+GGG 0.456120 3_2:-71186333 Msa0422070:CDS
AATGAGATTAGAGTGAGGTT+TGG 0.460637 3_2:+71187735 None:intergenic
TTGGAAACAATGTTAAGCTC+TGG 0.470905 3_2:+71186498 None:intergenic
TTCTTGGTATGACAACGAAT+GGG 0.472520 3_2:-71185421 Msa0422070:CDS
TCTTCTCAAGCCTTACAGTA+AGG 0.474802 3_2:+71185817 None:intergenic
AACATCATTCCCAGCAGCAC+TGG 0.480002 3_2:-71186044 Msa0422070:CDS
GATGCACCTATGTTTGTTGT+TGG 0.480077 3_2:-71186543 Msa0422070:CDS
TGGGACACGGAATGACATTC+CGG 0.489853 3_2:+71185863 None:intergenic
TTCAAGTATGACACTGTTCA+CGG 0.491509 3_2:-71187229 Msa0422070:CDS
ATTTGGAAGAATTGGACGAT+TGG 0.494519 3_2:-71187428 Msa0422070:CDS
TAGCATCTGACAAGAAGATC+AGG 0.494730 3_2:-71187565 Msa0422070:CDS
GATTACGTTATTGAGTCAAC+TGG 0.498321 3_2:-71186977 Msa0422070:CDS
GAGATTCCATGGGGTGAGGT+TGG 0.499881 3_2:-71187004 Msa0422070:CDS
GACCCTCAACGATTCCAAAT+CGG 0.501135 3_2:+71186331 None:intergenic
CTGACTTTATTGGCGATAGC+AGG 0.501827 3_2:-71185605 Msa0422070:intron
CTCAACACTACTATCTCAAT+GGG 0.503651 3_2:-71187688 Msa0422070:intron
TTTCTTGGTATGACAACGAA+TGG 0.505583 3_2:-71185422 Msa0422070:CDS
GGAATCAGAGGGCAAGCTGA+AGG 0.509794 3_2:-71185664 Msa0422070:CDS
GATAAATAAACAACCTGTGA+TGG 0.511375 3_2:+71186290 None:intergenic
CAACTGAAACATCGACGGTT+GGG 0.515252 3_2:+71185844 None:intergenic
TTTCATCACTACTGATTACA+TGG 0.515255 3_2:-71187350 Msa0422070:intron
CAGCAGCACTGGAGCTGCCA+AGG 0.520669 3_2:-71186033 Msa0422070:intron
GGCAGCCTTGATCTGCTCAT+AGG 0.524781 3_2:+71185788 None:intergenic
TTGGCAGCTCCAGTGCTGCT+GGG 0.526344 3_2:+71186035 None:intergenic
CAATCAAGCTAAATATAAAG+AGG 0.528587 3_2:+71184988 None:intergenic
AAACATCGACGGTTGGGACA+CGG 0.531370 3_2:+71185850 None:intergenic
CTTCTTTCTCACCAAAGAGA+AGG 0.533597 3_2:+71187164 None:intergenic
TTCTTTCTCACCAAAGAGAA+GGG 0.538245 3_2:+71187165 None:intergenic
ACAACTGAAACATCGACGGT+TGG 0.545734 3_2:+71185843 None:intergenic
GTTAGTAGTGCAACTAGCAT+TGG 0.551894 3_2:+71186479 None:intergenic
AACATAGGTGCATCTTTGCT+GGG 0.553014 3_2:+71186552 None:intergenic
ATGGTCCATCAAGCAAGGAC+TGG 0.555599 3_2:-71186091 Msa0422070:CDS
CTGCCTTGCTCCCCTCGCCA+AGG 0.563779 3_2:-71186457 Msa0422070:intron
ATGACACTGTTCACGGTCAG+TGG 0.566865 3_2:-71187222 Msa0422070:CDS
AGCAACCTATGAGCAGATCA+AGG 0.567372 3_2:-71185793 Msa0422070:CDS
AAACCTTGGCGAGGGGAGCA+AGG 0.568255 3_2:+71186454 None:intergenic
GGAACCCTGAGGAGATTCCA+TGG 0.575104 3_2:-71187015 Msa0422070:CDS
AGTCTGAGCTTGGATTGCAT+TGG 0.577784 3_2:-71185236 Msa0422070:three_prime_UTR
TTAACACCAACAACAAACAT+AGG 0.578256 3_2:+71186537 None:intergenic
TCCCTCTCTAAAACAAGAGT+AGG 0.578982 3_2:+71185062 None:intergenic
GTAACAATTTACAACAGTAT+CGG 0.583695 3_2:-71184916 Msa0422070:three_prime_UTR
TGAGGAGATTCCATGGGGTG+AGG 0.584999 3_2:-71187008 Msa0422070:CDS
TGACCGATTTGGAATCGTTG+AGG 0.585725 3_2:-71186334 Msa0422070:CDS
ATTTGAAACATACAGGCTGT+AGG 0.586694 3_2:-71185918 Msa0422070:intron
GAACCCTGAGGAGATTCCAT+GGG 0.589804 3_2:-71187014 Msa0422070:CDS
TCAAGCAAGGACTGGAGAGG+TGG 0.590129 3_2:-71186083 Msa0422070:CDS
GTATTGAACGGTAAATTGAC+CGG 0.592350 3_2:-71185882 Msa0422070:CDS
ATAAGAATGAGATTAGAGTG+AGG 0.597103 3_2:+71187730 None:intergenic
ACCACAGTTCACGCCATCAC+AGG 0.598843 3_2:-71186303 Msa0422070:intron
AAGATCAGGATCGGAATCAA+CGG 0.599281 3_2:-71187551 Msa0422070:intron
TGATTAGGGTGGTGCCAAGA+AGG 0.600438 3_2:-71186589 Msa0422070:intron
CACCCCATGGAATCTCCTCA+GGG 0.600637 3_2:+71187011 None:intergenic
GCTGCTGGGAATGATGTTGA+AGG 0.601432 3_2:+71186049 None:intergenic
TCAGCTCCAACCTCACCCCA+TGG 0.603751 3_2:+71186998 None:intergenic
TGTTGTTGGTGTTAACGAGA+AGG 0.604083 3_2:-71186529 Msa0422070:CDS
GAATCAGAGGGCAAGCTGAA+GGG 0.606362 3_2:-71185663 Msa0422070:CDS
GGGTTATACTGAAGATGATG+TGG 0.606548 3_2:-71185634 Msa0422070:CDS
GACAATCAAATCAATAACAC+GGG 0.607012 3_2:+71185282 None:intergenic
AGTGTCATACTTGAACATAT+AGG 0.610966 3_2:+71187237 None:intergenic
ATGTAATCAGTAGTGATGAA+AGG 0.611234 3_2:+71187352 None:intergenic
TCTTGGTATGACAACGAATG+GGG 0.619721 3_2:-71185420 Msa0422070:CDS
TCTGACAAGAAGATCAGGAT+CGG 0.628839 3_2:-71187560 Msa0422070:CDS
AAGAGGATCGCAAAGAGACA+TGG 0.630623 3_2:+71185005 None:intergenic
TGTTGATGGTCCATCAAGCA+AGG 0.632457 3_2:-71186096 Msa0422070:CDS
GTCAACAACTGAAACATCGA+CGG 0.646627 3_2:+71185839 None:intergenic
CCATCAAGCAAGGACTGGAG+AGG 0.655042 3_2:-71186086 Msa0422070:CDS
GGACAATCAAATCAATAACA+CGG 0.656794 3_2:+71185281 None:intergenic
AAAACCAGGGAGGAATCAGA+GGG 0.660427 3_2:-71185675 Msa0422070:intron
ACCTGTGATGGCGTGAACTG+TGG 0.667657 3_2:+71186302 None:intergenic
AAAGTGCTTCCAGTATTGAA+CGG 0.668457 3_2:-71185894 Msa0422070:CDS
ATCAAGCCACAGAAGCAATG+TGG 0.677587 3_2:+71185260 None:intergenic
AACCCTGAGGAGATTCCATG+GGG 0.716862 3_2:-71187013 Msa0422070:CDS
ACCATCAACAGTCTTCTGAG+TGG 0.726815 3_2:+71186109 None:intergenic
TCTGAATAATAGGAACCCTG+AGG 0.747270 3_2:-71187026 Msa0422070:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAACAAATTTAAAAGAT+TGG + chr3_2:71187648-71187667 None:intergenic 10.0%
!!! GATTTGAAATTTATGTAATT+TGG - chr3_2:71185968-71185987 Msa0422070:intron 15.0%
!!! TTTTAAATTATTAGCTTCAT+TGG - chr3_2:71186196-71186215 Msa0422070:intron 15.0%
!! AAATTTGTCAAATTATTACA+TGG - chr3_2:71186596-71186615 Msa0422070:intron 15.0%
!!! GCATTTTTATTTTTGTATTT+TGG - chr3_2:71187479-71187498 Msa0422070:intron 15.0%
!! TAAACGAGAAATAGATTAAA+CGG + chr3_2:71184977-71184996 None:intergenic 20.0%
!!! AACTGTTTTAACTTTAAAAC+AGG - chr3_2:71185139-71185158 Msa0422070:three_prime_UTR 20.0%
!!! TTTAACTTTAAAACAGGATT+TGG - chr3_2:71185145-71185164 Msa0422070:three_prime_UTR 20.0%
!!! TGTTTGATTAATTTTGCAAT+CGG + chr3_2:71185279-71185298 None:intergenic 20.0%
!!! TAATTTATGATCTGTGATTT+TGG - chr3_2:71185469-71185488 Msa0422070:CDS 20.0%
!! ATTAATTACAACATCCAAAA+GGG + chr3_2:71185510-71185529 None:intergenic 20.0%
!! AATTAATTACAACATCCAAA+AGG + chr3_2:71185511-71185530 None:intergenic 20.0%
!!! TATTATTTGATAGAGCATTT+TGG - chr3_2:71185708-71185727 Msa0422070:intron 20.0%
!!! ATTATTTGATAGAGCATTTT+GGG - chr3_2:71185709-71185728 Msa0422070:intron 20.0%
!!! ATATTGAATTTGAAACATAC+AGG - chr3_2:71186665-71186684 Msa0422070:intron 20.0%
!!! TTTTGCAATTTCAACAAAAT+AGG + chr3_2:71186898-71186917 None:intergenic 20.0%
! TTAAGAGAGAAAAAGGAAAA+AGG + chr3_2:71184951-71184970 None:intergenic 25.0%
! TTAATTACAACATCCAAAAG+GGG + chr3_2:71185509-71185528 None:intergenic 25.0%
!!! TTATTTGATAGAGCATTTTG+GGG - chr3_2:71185710-71185729 Msa0422070:intron 25.0%
! TTATGTAATTTGGATTGTTG+TGG - chr3_2:71185978-71185997 Msa0422070:intron 25.0%
! TATTAATCTTTACTCTTTGC+AGG - chr3_2:71186226-71186245 Msa0422070:intron 25.0%
!! TGATTAACTGATTGATTCTT+TGG - chr3_2:71186445-71186464 Msa0422070:intron 25.0%
!! TTTATCATTATAGAGTACCT+TGG + chr3_2:71186577-71186596 None:intergenic 25.0%
! CAAATTATTACATGGTTGAA+TGG - chr3_2:71186604-71186623 Msa0422070:intron 25.0%
! AAGTTTAACACTTTACTTGA+TGG + chr3_2:71186826-71186845 None:intergenic 25.0%
! AAAATAGGTTTATGTTAGGA+GGG + chr3_2:71186883-71186902 None:intergenic 25.0%
! CAACAAAATAGGTTTATGTT+AGG + chr3_2:71186887-71186906 None:intergenic 25.0%
!!! TGAACTTTATTTTCATTTGC+AGG - chr3_2:71187087-71187106 Msa0422070:intron 25.0%
! ATCACAATATGACATTGAAT+TGG - chr3_2:71187222-71187241 Msa0422070:CDS 25.0%
!! GATGAACACTATGTATATTT+TGG + chr3_2:71187252-71187271 None:intergenic 25.0%
!! GCAACACAAATTTTTATTCT+TGG + chr3_2:71187429-71187448 None:intergenic 25.0%
! AGAATAAAAATTTGTGTTGC+TGG - chr3_2:71187429-71187448 Msa0422070:CDS 25.0%
!! GAATAAAAATTTGTGTTGCT+GGG - chr3_2:71187430-71187449 Msa0422070:CDS 25.0%
!!! TGTATTTTGGATTGAATAGA+CGG - chr3_2:71187492-71187511 Msa0422070:intron 25.0%
! CAATCAAGCTAAATATAAAG+AGG + chr3_2:71187605-71187624 None:intergenic 25.0%
! GTAACAATTTACAACAGTAT+CGG - chr3_2:71187674-71187693 Msa0422070:intron 25.0%
ATAAGAATGAGATTAGAGTG+AGG + chr3_2:71184863-71184882 None:intergenic 30.0%
!! AGTAGTGTTGAGTTGAAATT+AGG + chr3_2:71184894-71184913 None:intergenic 30.0%
AAAACAGGATTTGGAAGAAT+TGG - chr3_2:71185154-71185173 Msa0422070:three_prime_UTR 30.0%
ATGTAATCAGTAGTGATGAA+AGG + chr3_2:71185241-71185260 None:intergenic 30.0%
! TTTCATCACTACTGATTACA+TGG - chr3_2:71185240-71185259 Msa0422070:three_prime_UTR 30.0%
AGTGTCATACTTGAACATAT+AGG + chr3_2:71185356-71185375 None:intergenic 30.0%
! GCATTTTGAACTTAAGGTTA+AGG - chr3_2:71185393-71185412 Msa0422070:intron 30.0%
ATCACAGATCATAAATTACC+TGG + chr3_2:71185467-71185486 None:intergenic 30.0%
TCTGATTGCATCTGAATAAT+AGG - chr3_2:71185554-71185573 Msa0422070:intron 30.0%
TGTATCGAATCATTCAAACA+GGG + chr3_2:71185922-71185941 None:intergenic 30.0%
TTAACACCAACAACAAACAT+AGG + chr3_2:71186056-71186075 None:intergenic 30.0%
!! AGGGTATTGAAAAAAAACCT+TGG + chr3_2:71186153-71186172 None:intergenic 30.0%
CCAATAAACATGCTACAAAA+GGG + chr3_2:71186172-71186191 None:intergenic 30.0%
ACCAATAAACATGCTACAAA+AGG + chr3_2:71186173-71186192 None:intergenic 30.0%
GATAAATAAACAACCTGTGA+TGG + chr3_2:71186303-71186322 None:intergenic 30.0%
GGAGGGAAAAATTATTCAAT+TGG + chr3_2:71186866-71186885 None:intergenic 30.0%
CAAAATAGGTTTATGTTAGG+AGG + chr3_2:71186884-71186903 None:intergenic 30.0%
TTGTTGAAATTGCAAAAACC+AGG - chr3_2:71186901-71186920 Msa0422070:intron 30.0%
TGTTGAAATTGCAAAAACCA+GGG - chr3_2:71186902-71186921 Msa0422070:intron 30.0%
! AAACTGTCATGATCAGTTTT+TGG - chr3_2:71187039-71187058 Msa0422070:intron 30.0%
AATGTCATATTGTGATAGCA+AGG + chr3_2:71187218-71187237 None:intergenic 30.0%
GACAATCAAATCAATAACAC+GGG + chr3_2:71187311-71187330 None:intergenic 30.0%
GGACAATCAAATCAATAACA+CGG + chr3_2:71187312-71187331 None:intergenic 30.0%
TACAGGTAAATTGTTCTCAA+TGG + chr3_2:71187736-71187755 None:intergenic 30.0%
AATGAGATTAGAGTGAGGTT+TGG + chr3_2:71184858-71184877 None:intergenic 35.0%
ACTCAACACTACTATCTCAA+TGG - chr3_2:71184901-71184920 Msa0422070:three_prime_UTR 35.0%
CTCAACACTACTATCTCAAT+GGG - chr3_2:71184902-71184921 Msa0422070:three_prime_UTR 35.0%
ACGGTGATTAAGAGAGAAAA+AGG + chr3_2:71184958-71184977 None:intergenic 35.0%
ATTTGGAAGAATTGGACGAT+TGG - chr3_2:71185162-71185181 Msa0422070:three_prime_UTR 35.0%
TTCAAGTATGACACTGTTCA+CGG - chr3_2:71185361-71185380 Msa0422070:intron 35.0%
!!! GTGGAAGCATTTTGAACTTA+AGG - chr3_2:71185387-71185406 Msa0422070:intron 35.0%
TTCTTTCTCACCAAAGAGAA+GGG + chr3_2:71185428-71185447 None:intergenic 35.0%
!!! GAGAAAGAAGTTGCTGTTTT+CGG - chr3_2:71185439-71185458 Msa0422070:CDS 35.0%
GATTACGTTATTGAGTCAAC+TGG - chr3_2:71185613-71185632 Msa0422070:CDS 35.0%
CTGTATCGAATCATTCAAAC+AGG + chr3_2:71185923-71185942 None:intergenic 35.0%
TTTGGATTGTTGTGGTGATT+AGG - chr3_2:71185986-71186005 Msa0422070:intron 35.0%
TTGGATTGTTGTGGTGATTA+GGG - chr3_2:71185987-71186006 Msa0422070:intron 35.0%
AGCAGAAATAACAACCTTCT+TGG + chr3_2:71186018-71186037 None:intergenic 35.0%
TTGGAAACAATGTTAAGCTC+TGG + chr3_2:71186095-71186114 None:intergenic 35.0%
TTGAAAAAAAACCTTGGCGA+GGG + chr3_2:71186147-71186166 None:intergenic 35.0%
ATTGAAAAAAAACCTTGGCG+AGG + chr3_2:71186148-71186167 None:intergenic 35.0%
! CCCTTTTGTAGCATGTTTAT+TGG - chr3_2:71186169-71186188 Msa0422070:intron 35.0%
CAGGTTATTAATGACCGATT+TGG - chr3_2:71186245-71186264 Msa0422070:intron 35.0%
! ATTTGAAACATACAGGCTGT+AGG - chr3_2:71186672-71186691 Msa0422070:intron 35.0%
! AAAGTGCTTCCAGTATTGAA+CGG - chr3_2:71186696-71186715 Msa0422070:intron 35.0%
GTCAATTTACCGTTCAATAC+TGG + chr3_2:71186708-71186727 None:intergenic 35.0%
GTATTGAACGGTAAATTGAC+CGG - chr3_2:71186708-71186727 Msa0422070:intron 35.0%
!! GTGGTATCTACTGACTTTAT+TGG - chr3_2:71186975-71186994 Msa0422070:intron 35.0%
ATTCAAAGCAATTCCAGCTT+TGG + chr3_2:71187129-71187148 None:intergenic 35.0%
ACTTTGTGAAACTCGTTTCT+TGG - chr3_2:71187153-71187172 Msa0422070:CDS 35.0%
TTTCTTGGTATGACAACGAA+TGG - chr3_2:71187168-71187187 Msa0422070:CDS 35.0%
TTCTTGGTATGACAACGAAT+GGG - chr3_2:71187169-71187188 Msa0422070:CDS 35.0%
! TGTTCCAAATTTTGTCTCAC+TGG - chr3_2:71187379-71187398 Msa0422070:CDS 35.0%
ATCTCCAGTGAGACAAAATT+TGG + chr3_2:71187386-71187405 None:intergenic 35.0%
!!! TACCTACTCTTGTTTTAGAG+AGG - chr3_2:71187526-71187545 Msa0422070:intron 35.0%
!!! ACCTACTCTTGTTTTAGAGA+GGG - chr3_2:71187527-71187546 Msa0422070:intron 35.0%
TAGCATCTGACAAGAAGATC+AGG - chr3_2:71185025-71185044 Msa0422070:three_prime_UTR 40.0%
TCTGACAAGAAGATCAGGAT+CGG - chr3_2:71185030-71185049 Msa0422070:three_prime_UTR 40.0%
AAGATCAGGATCGGAATCAA+CGG - chr3_2:71185039-71185058 Msa0422070:three_prime_UTR 40.0%
AAACAACGAGATTCGAACTC+TGG - chr3_2:71185294-71185313 Msa0422070:intron 40.0%
CTTCTTTCTCACCAAAGAGA+AGG + chr3_2:71185429-71185448 None:intergenic 40.0%
TCTGAATAATAGGAACCCTG+AGG - chr3_2:71185564-71185583 Msa0422070:intron 40.0%
! AACTGGTGTTTTCACTGACA+AGG - chr3_2:71185630-71185649 Msa0422070:CDS 40.0%
ATTGTCTCACTCAGTAGAGT+CGG + chr3_2:71185753-71185772 None:intergenic 40.0%
AACATAGGTGCATCTTTGCT+GGG + chr3_2:71186041-71186060 None:intergenic 40.0%
AAACATAGGTGCATCTTTGC+TGG + chr3_2:71186042-71186061 None:intergenic 40.0%
!! GATGCACCTATGTTTGTTGT+TGG - chr3_2:71186047-71186066 Msa0422070:CDS 40.0%
!! TGTTGTTGGTGTTAACGAGA+AGG - chr3_2:71186061-71186080 Msa0422070:CDS 40.0%
GTTAGTAGTGCAACTAGCAT+TGG + chr3_2:71186114-71186133 None:intergenic 40.0%
TGAAAAAAAACCTTGGCGAG+GGG + chr3_2:71186146-71186165 None:intergenic 40.0%
GTCAACAACTGAAACATCGA+CGG + chr3_2:71186754-71186773 None:intergenic 40.0%
CAGTTGTTGACCTTACTGTA+AGG - chr3_2:71186763-71186782 Msa0422070:intron 40.0%
TCTTCTCAAGCCTTACAGTA+AGG + chr3_2:71186776-71186795 None:intergenic 40.0%
TGAAATTGCAAAAACCAGGG+AGG - chr3_2:71186905-71186924 Msa0422070:intron 40.0%
GGGTTATACTGAAGATGATG+TGG - chr3_2:71186956-71186975 Msa0422070:intron 40.0%
TCTTGGTATGACAACGAATG+GGG - chr3_2:71187170-71187189 Msa0422070:CDS 40.0%
TGGATTGAATAGACGGCTTT+AGG - chr3_2:71187499-71187518 Msa0422070:intron 40.0%
!! TCCCTCTCTAAAACAAGAGT+AGG + chr3_2:71187531-71187550 None:intergenic 40.0%
GAGATTAGAGTGAGGTTTGG+TGG + chr3_2:71184855-71184874 None:intergenic 45.0%
GACACTAAGACCCTTCTCTT+TGG - chr3_2:71185415-71185434 Msa0422070:CDS 45.0%
!!! AAGTTGCTGTTTTCGGAACC+AGG - chr3_2:71185446-71185465 Msa0422070:CDS 45.0%
! TCTGAATCTCATGCCCCTTT+TGG - chr3_2:71185493-71185512 Msa0422070:intron 45.0%
ACTCAGTAGAGTCGGATACA+TGG + chr3_2:71185745-71185764 None:intergenic 45.0%
GATTGTTGTGGTGATTAGGG+TGG - chr3_2:71185990-71186009 Msa0422070:intron 45.0%
!! TGACCGATTTGGAATCGTTG+AGG - chr3_2:71186256-71186275 Msa0422070:intron 45.0%
!! GACCGATTTGGAATCGTTGA+GGG - chr3_2:71186257-71186276 Msa0422070:intron 45.0%
GACCCTCAACGATTCCAAAT+CGG + chr3_2:71186262-71186281 None:intergenic 45.0%
ACCATCAACAGTCTTCTGAG+TGG + chr3_2:71186484-71186503 None:intergenic 45.0%
!! TGTTGATGGTCCATCAAGCA+AGG - chr3_2:71186494-71186513 Msa0422070:CDS 45.0%
CAACTGAAACATCGACGGTT+GGG + chr3_2:71186749-71186768 None:intergenic 45.0%
ACAACTGAAACATCGACGGT+TGG + chr3_2:71186750-71186769 None:intergenic 45.0%
AGCAACCTATGAGCAGATCA+AGG - chr3_2:71186797-71186816 Msa0422070:intron 45.0%
AAAAACCAGGGAGGAATCAG+AGG - chr3_2:71186914-71186933 Msa0422070:intron 45.0%
AAAACCAGGGAGGAATCAGA+GGG - chr3_2:71186915-71186934 Msa0422070:intron 45.0%
!!! GGCAAGCTGAAGGGTATTTT+GGG - chr3_2:71186936-71186955 Msa0422070:intron 45.0%
CTGACTTTATTGGCGATAGC+AGG - chr3_2:71186985-71187004 Msa0422070:CDS 45.0%
TTGGCGATAGCAGGTAATGT+TGG - chr3_2:71186994-71187013 Msa0422070:CDS 45.0%
AGCATCTTTGATGCCAAAGC+TGG - chr3_2:71187113-71187132 Msa0422070:intron 45.0%
ATGACAACGAATGGGGTTAC+AGG - chr3_2:71187177-71187196 Msa0422070:CDS 45.0%
GATTGTCCACATTGCTTCTG+TGG - chr3_2:71187324-71187343 Msa0422070:intron 45.0%
ATCAAGCCACAGAAGCAATG+TGG + chr3_2:71187333-71187352 None:intergenic 45.0%
AGTCTGAGCTTGGATTGCAT+TGG - chr3_2:71187354-71187373 Msa0422070:CDS 45.0%
AAGAGGATCGCAAAGAGACA+TGG + chr3_2:71187588-71187607 None:intergenic 45.0%
ATGACACTGTTCACGGTCAG+TGG - chr3_2:71185368-71185387 Msa0422070:intron 50.0%
GAACCCTGAGGAGATTCCAT+GGG - chr3_2:71185576-71185595 Msa0422070:intron 50.0%
AACCCTGAGGAGATTCCATG+GGG - chr3_2:71185577-71185596 Msa0422070:intron 50.0%
CAAAGCTGCTGCTCACTTGA+AGG - chr3_2:71185654-71185673 Msa0422070:CDS 50.0%
! TGATTAGGGTGGTGCCAAGA+AGG - chr3_2:71186001-71186020 Msa0422070:intron 50.0%
GCCACTCAGAAGACTGTTGA+TGG - chr3_2:71186480-71186499 Msa0422070:CDS 50.0%
ATGGTCCATCAAGCAAGGAC+TGG - chr3_2:71186499-71186518 Msa0422070:CDS 50.0%
GCTGCTGGGAATGATGTTGA+AGG + chr3_2:71186544-71186563 None:intergenic 50.0%
AACATCATTCCCAGCAGCAC+TGG - chr3_2:71186546-71186565 Msa0422070:CDS 50.0%
TGGGACACGGAATGACATTC+CGG + chr3_2:71186730-71186749 None:intergenic 50.0%
AAACATCGACGGTTGGGACA+CGG + chr3_2:71186743-71186762 None:intergenic 50.0%
GAATCAGAGGGCAAGCTGAA+GGG - chr3_2:71186927-71186946 Msa0422070:intron 50.0%
!!! GGGCAAGCTGAAGGGTATTT+TGG - chr3_2:71186935-71186954 Msa0422070:intron 50.0%
TGGCTTGATGAGTCTGAGCT+TGG - chr3_2:71187344-71187363 Msa0422070:intron 50.0%
GGAACCCTGAGGAGATTCCA+TGG - chr3_2:71185575-71185594 Msa0422070:intron 55.0%
CACCCCATGGAATCTCCTCA+GGG + chr3_2:71185582-71185601 None:intergenic 55.0%
TCACCCCATGGAATCTCCTC+AGG + chr3_2:71185583-71185602 None:intergenic 55.0%
TGAGGAGATTCCATGGGGTG+AGG - chr3_2:71185582-71185601 Msa0422070:intron 55.0%
GAGATTCCATGGGGTGAGGT+TGG - chr3_2:71185586-71185605 Msa0422070:intron 55.0%
ACCACAGTTCACGCCATCAC+AGG - chr3_2:71186287-71186306 Msa0422070:intron 55.0%
! ACCTGTGATGGCGTGAACTG+TGG + chr3_2:71186291-71186310 None:intergenic 55.0%
CCTCTCCAGTCCTTGCTTGA+TGG + chr3_2:71186507-71186526 None:intergenic 55.0%
CCATCAAGCAAGGACTGGAG+AGG - chr3_2:71186504-71186523 Msa0422070:CDS 55.0%
TCAAGCAAGGACTGGAGAGG+TGG - chr3_2:71186507-71186526 Msa0422070:CDS 55.0%
GGCAGCCTTGATCTGCTCAT+AGG + chr3_2:71186805-71186824 None:intergenic 55.0%
GGAATCAGAGGGCAAGCTGA+AGG - chr3_2:71186926-71186945 Msa0422070:intron 55.0%
TCAGCTCCAACCTCACCCCA+TGG + chr3_2:71185595-71185614 None:intergenic 60.0%
AAACCTTGGCGAGGGGAGCA+AGG + chr3_2:71186139-71186158 None:intergenic 60.0%
! TTGGCAGCTCCAGTGCTGCT+GGG + chr3_2:71186558-71186577 None:intergenic 60.0%
CTTGCCCTCTGATTCCTCCC+TGG + chr3_2:71186922-71186941 None:intergenic 60.0%
CTTGGCAGCTCCAGTGCTGC+TGG + chr3_2:71186559-71186578 None:intergenic 65.0%
! CAGCAGCACTGGAGCTGCCA+AGG - chr3_2:71186557-71186576 Msa0422070:CDS 65.0%
CTGCCTTGCTCCCCTCGCCA+AGG - chr3_2:71186133-71186152 Msa0422070:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 71184852 71187760 71184852 ID=Msa0422070;Name=Msa0422070
chr3_2 mRNA 71184852 71187760 71184852 ID=Msa0422070-mRNA-1;Parent=Msa0422070;Name=Msa0422070-mRNA-1;_AED=0.17;_eAED=0.17;_QI=68|0.91|0.92|1|0.83|0.76|13|389|327
chr3_2 exon 71184852 71185091 71184852 ID=Msa0422070-mRNA-1:exon:17330;Parent=Msa0422070-mRNA-1
chr3_2 exon 71185112 71185306 71185112 ID=Msa0422070-mRNA-1:exon:17329;Parent=Msa0422070-mRNA-1
chr3_2 exon 71185414 71185503 71185414 ID=Msa0422070-mRNA-1:exon:17328;Parent=Msa0422070-mRNA-1
chr3_2 exon 71185606 71185689 71185606 ID=Msa0422070-mRNA-1:exon:17327;Parent=Msa0422070-mRNA-1
chr3_2 exon 71185783 71185925 71185783 ID=Msa0422070-mRNA-1:exon:17326;Parent=Msa0422070-mRNA-1
chr3_2 exon 71186034 71186131 71186034 ID=Msa0422070-mRNA-1:exon:17325;Parent=Msa0422070-mRNA-1
chr3_2 exon 71186304 71186364 71186304 ID=Msa0422070-mRNA-1:exon:17324;Parent=Msa0422070-mRNA-1
chr3_2 exon 71186458 71186604 71186458 ID=Msa0422070-mRNA-1:exon:17323;Parent=Msa0422070-mRNA-1
chr3_2 exon 71186976 71187036 71186976 ID=Msa0422070-mRNA-1:exon:17322;Parent=Msa0422070-mRNA-1
chr3_2 exon 71187145 71187260 71187145 ID=Msa0422070-mRNA-1:exon:17321;Parent=Msa0422070-mRNA-1
chr3_2 exon 71187351 71187451 71187351 ID=Msa0422070-mRNA-1:exon:17320;Parent=Msa0422070-mRNA-1
chr3_2 exon 71187552 71187584 71187552 ID=Msa0422070-mRNA-1:exon:17319;Parent=Msa0422070-mRNA-1
chr3_2 exon 71187689 71187760 71187689 ID=Msa0422070-mRNA-1:exon:17318;Parent=Msa0422070-mRNA-1
chr3_2 five_prime_UTR 71187693 71187760 71187693 ID=Msa0422070-mRNA-1:five_prime_utr;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71187689 71187692 71187689 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71187552 71187584 71187552 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71187351 71187451 71187351 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71187145 71187260 71187145 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71186976 71187036 71186976 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71186458 71186604 71186458 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71186304 71186364 71186304 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71186034 71186131 71186034 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71185783 71185925 71185783 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71185606 71185689 71185606 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71185414 71185503 71185414 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 CDS 71185261 71185306 71185261 ID=Msa0422070-mRNA-1:cds;Parent=Msa0422070-mRNA-1
chr3_2 three_prime_UTR 71185112 71185260 71185112 ID=Msa0422070-mRNA-1:three_prime_utr;Parent=Msa0422070-mRNA-1
chr3_2 three_prime_UTR 71184852 71185091 71184852 ID=Msa0422070-mRNA-1:three_prime_utr;Parent=Msa0422070-mRNA-1
Gene Sequence

>Msa0422070

ATGGCATCTGACAAGAAGATCAGGATCGGAATCAACGGATTTGGAAGAATTGGACGATTGGTTGCTAGAGTTGCTCTTCAAAGAAACGATGTTGAACTCGTTGCTATCAACGATCCTTTCATCACTACTGATTACATGACCTATATGTTCAAGTATGACACTGTTCACGGTCAGTGGAAGCATTTTGAACTTAAGGTTAAGGACACTAAGACCCTTCTCTTTGGTGAGAAAGAAGTTGCTGTTTTCGGAACCAGGAACCCTGAGGAGATTCCATGGGGTGAGGTTGGAGCTGATTACGTTATTGAGTCAACTGGTGGTGGTGCCAAGAAGGTTGTTATTTCTGCTCCCAGCAAAGATGCACCTATGTTTGTTGTTGGTGTTAACGAGAAGGAATACAAACCAGAGCTTAACATTGTTTCCAATGCTAGTTGCACTACTAACTGCCTTGCTCCCCTCGCCAAGGTTATTAATGACCGATTTGGAATCGTTGAGGGTCTTATGACCACAGTTCACGCCATCACAGCCACTCAGAAGACTGTTGATGGTCCATCAAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATTCCCAGCAGCACTGGAGCTGCCAAGGCTGTAGGCAAAGTGCTTCCAGTATTGAACGGTAAATTGACCGGAATGTCATTCCGTGTCCCAACCGTCGATGTTTCAGTTGTTGACCTTACTGTAAGGCTTGAGAAGAAAGCAACCTATGAGCAGATCAAGGCTGCCATCAAGGAGGAATCAGAGGGCAAGCTGAAGGGTATTTTGGGTTATACTGAAGATGATGTGGTATCTACTGACTTTATTGGCGATAGCAGGTCTAGCATCTTTGATGCCAAAGCTGGAATTGCTTTGAATGACAACTTTGTGAAACTCGTTTCTTGGTATGACAACGAATGGGGTTACAGTACCCGTGTTATTGATTTGATTGTCCACATTGCTTCTGTGGCTTGA

Protein sequence

>Msa0422070

MASDKKIRIGINGFGRIGRLVARVALQRNDVELVAINDPFITTDYMTYMFKYDTVHGQWKHFELKVKDTKTLLFGEKEVAVFGTRNPEEIPWGEVGADYVIESTGGGAKKVVISAPSKDAPMFVVGVNEKEYKPELNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTVDVSVVDLTVRLEKKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVIDLIVHIASVA*