AlfalfaGEDB | Msa0906690

M. sativa cultivar zhongmu-4 / Msa0906690

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906690	XP_039691155.1	93.688	1204	50	6	1	1179	1	1203	0.0	2073

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906690	sp\|A0A166B1A6\|NMCP1_DAUCS	38.971	1147	626	18	78	1179	2	1119	0.0	640

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0906690	0.860122	2.573453e-63	-8.615850e-47
Msa0002680	Msa0906690	0.836909	7.097070e-57	-8.615850e-47
Msa0002710	Msa0906690	0.834082	3.682007e-56	-8.615850e-47
Msa0003220	Msa0906690	0.819845	9.378181e-53	-8.615850e-47
Msa0005270	Msa0906690	0.805053	1.607058e-49	-8.615850e-47
Msa0006110	Msa0906690	0.848351	6.477064e-60	-8.615850e-47
Msa0007990	Msa0906690	0.812207	4.760596e-51	-8.615850e-47
Msa0008220	Msa0906690	0.829068	6.330567e-55	-8.615850e-47
Msa0010770	Msa0906690	0.848678	5.260975e-60	-8.615850e-47
Msa0011500	Msa0906690	0.811361	7.275300e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906690	MtrunA17_Chr6g0454711	93.688	1204	50	6	1	1179	1	1203	0.0	2073
Msa0906690	MtrunA17_Chr7g0220961	38.375	1243	636	25	1	1179	1	1177	0.0	664
Msa0906690	MtrunA17_Chr7g0274701	60.150	266	60	8	797	1048	8	241	1.12e-79	261
Msa0906690	MtrunA17_Chr4g0054401	28.370	853	558	8	11	837	3	828	7.99e-79	281
Msa0906690	MtrunA17_Chr6g0454681	96.063	127	4	1	1053	1179	36	161	5.09e-74	242
Msa0906690	MtrunA17_Chr1g0184641	63.194	144	22	3	912	1048	1	120	7.59e-44	155
Msa0906690	MtrunA17_Chr1g0184651	46.111	180	51	6	336	486	100	262	7.24e-21	95.9
Msa0906690	MtrunA17_Chr1g0184651	63.636	88	24	4	797	884	257	336	1.58e-20	94.7
Msa0906690	MtrunA17_Chr5g0421221	92.857	42	3	0	103	144	1	42	2.57e-19	82.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0906690	AT1G13220.3	39.896	1158	577	26	1	1114	1	1083	0.0	633
Msa0906690	AT1G67230.1	37.949	1170	636	20	43	1179	20	1132	0.0	627
Msa0906690	AT1G13220.2	39.685	1144	573	25	13	1114	2	1070	0.0	620
Msa0906690	AT1G68790.1	38.194	1207	596	20	1	1179	1	1085	0.0	596
Msa0906690	AT1G13220.1	49.223	386	173	6	1	368	1	381	4.35e-95	310
Msa0906690	AT5G65770.1	28.256	860	569	7	1	837	1	835	5.06e-78	278
Msa0906690	AT5G65770.3	28.256	860	569	7	1	837	1	835	5.06e-78	278
Msa0906690	AT5G65780.2	27.995	868	569	8	1	837	1	843	1.26e-74	269
Msa0906690	AT5G65770.2	27.621	887	567	9	1	837	1	862	1.42e-72	263

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Find 261 sgRNAs with CRISPR-Local

Find 555 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAGAGAGCTGGAGA+AGG	0.499778	6_2:+5347467	Msa0906690:CDS
AAAGAACCCAACGGCGGCGG+AGG	0.486387	6_2:-5343508	None:intergenic
AAAGCAAATGAATTGGTGGA+TGG	0.572221	6_2:+5346002	Msa0906690:CDS
AAAGCGGAAATCTCTCGCTG+AGG	0.695563	6_2:+5347266	Msa0906690:CDS
AAAGGGAAGATTTGAAGGAG+TGG	0.529560	6_2:+5346319	Msa0906690:CDS
AAAGTTGAAATCATTGAAGG+AGG	0.620070	6_2:+5347425	Msa0906690:CDS
AAAGTTTGCTTCAAAAGGAG+CGG	0.615802	6_2:+5346144	Msa0906690:CDS
AAATCTTGGACGTGCATTTG+CGG	0.475636	6_2:-5348544	None:intergenic
AACAAAGTTGAAATCATTGA+AGG	0.439065	6_2:+5347422	Msa0906690:CDS
AACACGCTCAGTGAAGGCTG+TGG	0.612656	6_2:+5348916	Msa0906690:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATCAATATGCTACAAAACT+CGG	-	chr6_2:5343971-5343990	None:intergenic	30.0%
TTGAAGACTATAAACATGTC+TGG	+	chr6_2:5344051-5344070	Msa0906690:intron	30.0%
TATTCGACTCTGATACATAT+CGG	-	chr6_2:5344080-5344099	None:intergenic	30.0%
ATATGTATCAGAGTCGAATA+CGG	+	chr6_2:5344080-5344099	Msa0906690:intron	30.0%
TGTTGTTACTATTGAGTTTG+AGG	+	chr6_2:5344229-5344248	Msa0906690:intron	30.0%
ACTATTGAGTTTGAGGAATT+AGG	+	chr6_2:5344236-5344255	Msa0906690:intron	30.0%
AAAATTCAAGGAAATAACCC+AGG	-	chr6_2:5344443-5344462	None:intergenic	30.0%
GAAATTGAATCACATGGTTT+AGG	-	chr6_2:5344467-5344486	None:intergenic	30.0%
AACTTCTCATTATTCTACAG+TGG	-	chr6_2:5344561-5344580	None:intergenic	30.0%
AAAGAAATGTCAATATACGG+TGG	+	chr6_2:5344582-5344601	Msa0906690:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_2	gene	5343385	5351451	5343385	ID=Msa0906690;Name=Msa0906690
chr6_2	mRNA	5343385	5351451	5343385	ID=Msa0906690-mRNA-1;Parent=Msa0906690;Name=Msa0906690-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0.75\|0.66\|1\|0.75\|0.88\|9\|274\|1179
chr6_2	exon	5343385	5343618	5343385	ID=Msa0906690-mRNA-1:exon:1580;Parent=Msa0906690-mRNA-1
chr6_2	exon	5343728	5343778	5343728	ID=Msa0906690-mRNA-1:exon:1581;Parent=Msa0906690-mRNA-1
chr6_2	exon	5344780	5344989	5344780	ID=Msa0906690-mRNA-1:exon:1582;Parent=Msa0906690-mRNA-1
chr6_2	exon	5345930	5346183	5345930	ID=Msa0906690-mRNA-1:exon:1583;Parent=Msa0906690-mRNA-1
chr6_2	exon	5346287	5346557	5346287	ID=Msa0906690-mRNA-1:exon:1584;Parent=Msa0906690-mRNA-1
chr6_2	exon	5346663	5346746	5346663	ID=Msa0906690-mRNA-1:exon:1585;Parent=Msa0906690-mRNA-1
chr6_2	exon	5347186	5349233	5347186	ID=Msa0906690-mRNA-1:exon:1586;Parent=Msa0906690-mRNA-1
chr6_2	exon	5350700	5350862	5350700	ID=Msa0906690-mRNA-1:exon:1587;Parent=Msa0906690-mRNA-1
chr6_2	exon	5350953	5351451	5350953	ID=Msa0906690-mRNA-1:exon:1588;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5343385	5343618	5343385	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5343728	5343778	5343728	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5344780	5344989	5344780	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5345930	5346183	5345930	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5346287	5346557	5346287	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5346663	5346746	5346663	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5347186	5349233	5347186	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5350700	5350862	5350700	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	CDS	5350953	5351177	5350953	ID=Msa0906690-mRNA-1:cds;Parent=Msa0906690-mRNA-1
chr6_2	three_prime_UTR	5351178	5351451	5351178	ID=Msa0906690-mRNA-1:three_prime_utr;Parent=Msa0906690-mRNA-1

Gene Sequence

>Msa0906690

ATGTTCACGCCGCAGAGAAAATCACGACCTATCGGTACACCGGCATCATTCACACCGCGTCGAATTGGTGCCACACCTAAATCTGCCCTCGCAAAGGGAAAAGCTGTTGTCATCGCCGATGAACCTCCGCCGCCGTTGGGTTCTTTGACTGATTCTGGCGATGATGTTGTGGTGGCTTCTAGTTATGCTGAAGATTGGAAGAGGTTTAGAGATGTTGGACTGCTTGATGAAGCGAGGAAAGATGATGAAGCGATGTTGGAGAAGATTTCGAGACTGGAGAAAGAGCTTTATGATTATCAGTACAACATGGGTCTCCTTCTTATTGAGAAGCAAGAGTGGAGTTCCAAGTTTGATCGGCTGAGGCAAGAACTAGCTGAAACTCAGGAGGTTCTAAAACGAGATCAATCATCGCATTTGATTGCATTGTCTGAAGTCCAAAAACGAGAGGAAAATTTGAGGAAAGCTTTGAGTTTAGAAAAGCAGTGTGGAGCTGATCTTGAGAGAGCTTTGCGTGCAATGCAAGAAGAGCTTGCCGAAGTCCAGTCTTCTTCCCATACAAAGCTAGATAAAGCAAATGAATTGGTGGATGGAATTGAAGAGAAGGCTTCAACAGTTAACAAGAAACTGCATGATGCAGAAGCCAGGCTTGCTGAGGTAAACAGGAAAAATACAGAGCTAGATATGAAGTTGCGAGAGCTGGAGGTTCGTGAAAGTTTGCTTCAAAAGGAGCGGTTGTCAGTAGCTACCGATCGAGAATCGTTTGAATCAGTATTCTACAAACAAAGGGAAGATTTGAAGGAGTGGGAGAGGAAGCTACGGCAAAGAGAGGATATGCTAAGTGATGGTAGGCAAAATCTTGGTGAGAAAGAAAAGAATGTGACTGAAACAGAAAAAAAGCTGAAGCAGAAAGAGAGAGATCTAGAAGTGTTGGAGAAGAATATTAACTCATCTAATTCTTTATTAAAAGAAAAGGAAGCTGAGATGAGTAGAAGAGTAGCAGATGTAGATGCAGAAGAGAAGAAAGTGGATTCTGCAAAGAAAACGCTGGATATTAAAGAGAAAGAATTACATGAACTGGAACTAAAGCTTAGTGCCAGAGAAAGTGAAGGGATCCAGAAACTTCTTGATGAGCAAAAACATACTCTGGATTTAAAGTTGCAGCAGTTTGAGCTTGAAATGGAACAAAAGCGGAAATCTCTCGCTGAGGAGTTTAGCAGCAAGGAGGAGGCCTTGGAGTATAGGGAAATCGAAGTCAACCATAGGGAAACCAAGGTTGGAAAAGAAGAGCAAGCTTTGAGTACGAAGTCTGAGAGAATAAAGGAGCAAGATAAGGAACTTTTAACAAAGTTGAAATCATTGAAGGAGGAAGAAAAGACTATGAAAATAAAAGAGAGAGAGCTGGAGAAGGAAAAGGAGAAATTGCTTGCTGATCGGAAGAGTTTGGAGAATTTAAATGCTGAACTTGGGAAGCTTAAAGCTGAGATTTCTCAGCAGAAGCTGCAAATATGCCAAGAGACTGAGAATTTGAAGCTTACTCAAGATGAGAGGTCAGAGCATTCTCGTTTGCAATTGGAACTAAAGCAGGAGATAGAGCATACGAGAACGCAGAAAGATTTAATTATGAAGGAAGCTGAAAACTTGAGGGATGAGAGGCTTAGGTTTGAGAAAGAATGGGAAGAACTGGATAAGAAAAGAGCTGACATTAGTGCAGAACAACAGGAAGTTGAGAAGGAGAAGGAAAAGTTAAGAAAACTGAAGAACAGTGAAGAAGAAAGGTTGAAAAGAGAGAAGCAAGATATGGAAGATAATTTAAAGAAGGAGCTTGAAAAGCTTGAATTGGATAAGAAATCATTTAGTGATTCAATTAAACAAGAGGAATTTCTTTTATCTGAAAAGGTAAAAAATGAAAAGGCACAAATGGTTCAAGATTTTGAATGGAAAACAAGAAATCTTGAGAATGAAATTCAGAAAAGGAAAGAGGAGATGGAGAAAGACCTGCAGGAAAGAGAGAGAAAATTTCAGGAGGAGATGGAAAAAGAGCTTAATAATATTAATATCTTGAAAGATGCTGCTGAAAAGGAATGGGAAGAAGTCAAGTCTGAGGGGATCAGATTAGAGAATGGGAGAAAAGAACTCGAGACAAACAAGCAACAGCTGAAGTCTGACCAACGTGAGATGCATGAAGATTCTGAAATGCTTATGAATCTTAGCCAGAAAGTAAAGAAAGAACGTGAACGCCTTGTGGCTGAAAGAAACCATTTTCTCGCACTTGTTGAGAAGCTCAGGAATTGCAAGGACTGTGGGGAAGTTGTCAGGGACGTTGTTGTGTCTGATCTTCAGTTACCTGACAGTAAAGAGTGTGGGGTTCTTCCCTTGCCTACATCTCCTCTTGAGAACTCAAAGGACAATGTTATCGCTTCTGGCTCAAACCATTCTGGATCTAAATGGCCTGTGTCTGTGTTCCGCAAATGCACGTCCAAGATTTTCAGTTTATCCCCTAGTACTAACACAGATTCTATTGGTACTTCAAATATAGCTGGGACGTCCCCTGAGTCTGATGTAAATGTTAATATAGAAAAAGTAGGAGAGCCTGTGTCATCTCCTAATATAGAAGGACCGATAGTTACTCTTCAAGAACGACAAATAGCAGATGGAGTGGCTTTTCACTCTTCTGATACAGCACACAGAGAGGGGAATACTGAATATTCTTTATCCATAGATGAACACAGCTACATGGAAAGTTTGACAGGGGGAGGTCCAGATGATTCTCAACAGTCAGTCCCAAAGGTTGGTCGACAAAGACCTGGGAGGAAAAGCAAATCTGGAATTGCTAGAACACGCTCAGTGAAGGCTGTGGTTAAGGAGGCCAATGAGTTCCTAGGAAAAACGAGTTTGCAAAATCTTGATACTGATCATATCAAAGAAAATAGTCATGAAGAGTCCAGTCACACTGAGAAAGCTACTGGTAACAGTACAAGGAAGCGACAACGTGCACAAACTTCTAAGATTGCTGAAGGTGAGCAGAATGCTGCTGATAGTGAAGGACATTCAGACAGTACAACAGCTGGTGGGCGCAAGAAGAAAAGGTCAACAGTTGCTCCACCCACACAAGTTACAGGGGAGAAGCGTTACAACCTCAGGCGGCATAAGACCGAAACAAAGGCTCTTGAAAAAGAAGCTTCTGGTGGTAAACAGGAGGCAGGTGAAAAAAACCCTGAAGTAGCAGTGGTAGCTGATGACAATATCCAAACCACGACTCTAGTGCAGATCTCAACCGTAAAGTCTGTGGAGATCAAAGATGATCGAGTTGTAAGGTTTGAAATACCAAGAGACAATGTTGATGACAATGGTGCTACAACCAACTCTGTGGACCGCATTGAAGAAAGTGCTACACTGGAGTATGGAGATGAAGATGGAAGCATAGTCAATGACGTTGAAAATGAGGACGAGGGGGAAGATGAAGAGGAAGACGAAGAGGAGGAGGAGGATCCCGGTGAGGTGTCTATCGGAAAGAAGATCTTCAAATTTTTCACAACATGA

Protein sequence

>Msa0906690

MFTPQRKSRPIGTPASFTPRRIGATPKSALAKGKAVVIADEPPPPLGSLTDSGDDVVVASSYAEDWKRFRDVGLLDEARKDDEAMLEKISRLEKELYDYQYNMGLLLIEKQEWSSKFDRLRQELAETQEVLKRDQSSHLIALSEVQKREENLRKALSLEKQCGADLERALRAMQEELAEVQSSSHTKLDKANELVDGIEEKASTVNKKLHDAEARLAEVNRKNTELDMKLRELEVRESLLQKERLSVATDRESFESVFYKQREDLKEWERKLRQREDMLSDGRQNLGEKEKNVTETEKKLKQKERDLEVLEKNINSSNSLLKEKEAEMSRRVADVDAEEKKVDSAKKTLDIKEKELHELELKLSARESEGIQKLLDEQKHTLDLKLQQFELEMEQKRKSLAEEFSSKEEALEYREIEVNHRETKVGKEEQALSTKSERIKEQDKELLTKLKSLKEEEKTMKIKERELEKEKEKLLADRKSLENLNAELGKLKAEISQQKLQICQETENLKLTQDERSEHSRLQLELKQEIEHTRTQKDLIMKEAENLRDERLRFEKEWEELDKKRADISAEQQEVEKEKEKLRKLKNSEEERLKREKQDMEDNLKKELEKLELDKKSFSDSIKQEEFLLSEKVKNEKAQMVQDFEWKTRNLENEIQKRKEEMEKDLQERERKFQEEMEKELNNINILKDAAEKEWEEVKSEGIRLENGRKELETNKQQLKSDQREMHEDSEMLMNLSQKVKKERERLVAERNHFLALVEKLRNCKDCGEVVRDVVVSDLQLPDSKECGVLPLPTSPLENSKDNVIASGSNHSGSKWPVSVFRKCTSKIFSLSPSTNTDSIGTSNIAGTSPESDVNVNIEKVGEPVSSPNIEGPIVTLQERQIADGVAFHSSDTAHREGNTEYSLSIDEHSYMESLTGGGPDDSQQSVPKVGRQRPGRKSKSGIARTRSVKAVVKEANEFLGKTSLQNLDTDHIKENSHEESSHTEKATGNSTRKRQRAQTSKIAEGEQNAADSEGHSDSTTAGGRKKKRSTVAPPTQVTGEKRYNLRRHKTETKALEKEASGGKQEAGEKNPEVAVVADDNIQTTTLVQISTVKSVEIKDDRVVRFEIPRDNVDDNGATTNSVDRIEESATLEYGDEDGSIVNDVENEDEGEDEEEDEEEEEDPGEVSIGKKIFKFFTT*