AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1313320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313320 MtrunA17_Chr8g0341941 96.639 238 8 0 1 238 1 238 2.70e-167 461
Msa1313320 MtrunA17_Chr1g0151621 59.556 225 87 2 14 238 12 232 5.39e-94 276
Msa1313320 MtrunA17_Chr3g0102821 60.116 173 69 0 66 238 36 208 6.54e-73 221
Msa1313320 MtrunA17_Chr4g0076551 59.538 173 70 0 66 238 37 209 9.16e-73 221
Msa1313320 MtrunA17_Chr5g0446931 57.065 184 79 0 55 238 25 208 1.12e-72 221
Msa1313320 MtrunA17_Chr2g0290751 56.627 166 72 0 72 237 45 210 1.97e-66 204
Msa1313320 MtrunA17_Chr8g0388331 51.741 201 88 1 38 238 2 193 5.78e-66 203
Msa1313320 MtrunA17_Chr2g0290761 56.627 166 72 0 72 237 45 210 1.20e-65 202
Msa1313320 MtrunA17_Chr8g0346911 53.226 186 87 0 52 237 30 215 2.55e-65 202
Msa1313320 MtrunA17_Chr4g0055421 48.756 201 94 1 38 238 2 193 2.86e-65 201
Msa1313320 MtrunA17_Chr2g0290771 55.488 164 73 0 74 237 9 172 6.80e-65 199
Msa1313320 MtrunA17_Chr2g0290781 51.124 178 84 1 57 234 35 209 8.81e-62 193
Msa1313320 MtrunA17_Chr4g0063121 42.683 164 74 1 75 238 7 150 1.59e-42 143
Msa1313320 MtrunA17_Chr3g0126811 52.846 123 50 1 38 160 2 116 9.31e-34 118
Msa1313320 MtrunA17_Chr3g0126801 59.756 82 33 0 157 238 6 87 4.38e-31 111
Msa1313320 MtrunA17_Chr5g0399921 47.458 118 52 1 38 155 2 109 8.96e-29 105
Msa1313320 MtrunA17_Chr8g0388321 45.528 123 42 2 61 174 58 164 2.28e-24 95.5
Msa1313320 MtrunA17_Chr8g0388311 51.613 62 30 0 177 238 1 62 6.42e-16 70.5
Msa1313320 MtrunA17_Chr5g0399931 50.000 62 31 0 177 238 1 62 2.15e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1313320 AT4G33000.2 61.765 238 82 2 1 238 1 229 1.33e-99 290
Msa1313320 AT4G33000.1 62.174 230 79 1 9 238 18 239 7.20e-99 288
Msa1313320 AT4G33000.4 60.697 201 70 2 1 201 1 192 1.51e-79 237
Msa1313320 AT4G33000.6 60.697 201 70 2 1 201 1 192 1.51e-79 237
Msa1313320 AT4G33000.5 61.000 200 69 2 1 200 1 191 5.10e-79 237
Msa1313320 AT4G26570.1 61.850 173 66 0 66 238 36 208 1.15e-74 226
Msa1313320 AT5G55990.1 53.922 204 85 1 35 238 14 208 7.68e-74 224
Msa1313320 AT5G55990.2 53.922 204 85 1 35 238 14 208 7.68e-74 224
Msa1313320 AT4G26570.2 60.452 177 66 1 66 238 36 212 1.50e-72 221
Msa1313320 AT5G24270.4 55.224 201 85 1 38 238 2 197 1.93e-71 218
Msa1313320 AT5G24270.1 55.224 201 85 1 38 238 2 197 1.93e-71 218
Msa1313320 AT5G24270.2 55.224 201 85 1 38 238 2 197 1.93e-71 218
Msa1313320 AT1G64480.4 54.011 187 86 0 52 238 11 197 4.08e-68 208
Msa1313320 AT1G64480.2 54.011 187 86 0 52 238 11 197 7.77e-68 208
Msa1313320 AT1G64480.3 54.011 187 86 0 52 238 11 197 7.77e-68 208
Msa1313320 AT1G64480.1 54.011 187 86 0 52 238 11 197 7.77e-68 208
Msa1313320 AT5G47100.1 50.249 201 91 1 38 238 2 193 8.96e-68 208
Msa1313320 AT4G17615.4 51.244 201 89 1 38 238 2 193 2.81e-67 207
Msa1313320 AT4G17615.1 51.244 201 89 1 38 238 2 193 2.81e-67 207
Msa1313320 AT4G17615.5 51.244 201 89 1 38 238 2 193 2.81e-67 207
Msa1313320 AT5G24270.5 60.000 165 66 0 74 238 8 172 9.11e-67 205
Msa1313320 AT4G17615.3 51.244 201 89 1 38 238 2 193 1.84e-66 206
Msa1313320 AT4G16350.2 53.757 173 76 1 66 238 34 202 4.07e-61 192
Msa1313320 AT4G16350.1 53.757 173 76 1 66 238 34 202 4.07e-61 192
Msa1313320 AT4G33000.3 58.710 155 55 2 1 155 1 146 1.05e-56 178
Msa1313320 AT5G24270.3 54.861 144 65 0 95 238 7 150 1.19e-51 166
Msa1313320 AT4G17615.2 55.000 140 63 0 99 238 12 151 2.94e-50 162
Msa1313320 AT5G47100.2 46.061 165 80 1 38 202 2 157 5.59e-48 156
Msa1313320 AT4G26560.1 46.552 174 80 3 78 238 23 196 4.88e-47 155
Msa1313320 AT4G01420.2 43.820 178 100 0 61 238 15 192 7.45e-47 154
Msa1313320 AT4G01420.1 43.820 178 100 0 61 238 15 192 1.04e-46 154

Find 33 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAATTACCTTATCAATAA+TGG 0.205420 8_4:-11218413 None:intergenic
CTTTCATCCTTATACTCCTT+TGG 0.311172 8_4:+11217753 Msa1313320:CDS
CATGCCACATTCTGACAAAA+TGG 0.352911 8_4:-11218365 None:intergenic
CCTTGAATCCATTATTGATA+AGG 0.378005 8_4:+11218405 Msa1313320:CDS
CCTTATCAATAATGGATTCA+AGG 0.388885 8_4:-11218405 None:intergenic
TTTGCAATGCTGAGTTGATA+TGG 0.393856 8_4:+11214989 Msa1313320:exon
ATGGTGTTCATTCCATTGAT+TGG 0.438204 8_4:+11215167 Msa1313320:CDS
GAATGGTGTTATAGAATTTG+AGG 0.442220 8_4:+11217708 Msa1313320:CDS
AGTGGAAAGCATTTGTCATT+CGG 0.446196 8_4:+11218558 Msa1313320:CDS
TGATATAAGAACCCCGAAAG+TGG 0.484350 8_4:+11214884 None:intergenic
GGAAGAAAGCTCTTTATCTC+TGG 0.495722 8_4:+11215010 Msa1313320:CDS
GCTTCAGCTATACCAATCAA+TGG 0.499513 8_4:-11215179 None:intergenic
AAAATGCTTATACCCTATCA+AGG 0.515442 8_4:-11216862 None:intergenic
ATAAGATCAGTAAAGAAGAG+TGG 0.521942 8_4:+11218540 Msa1313320:CDS
CTTATCATCTTTGTCAGCAT+CGG 0.523718 8_4:-11218522 None:intergenic
GCACTATTGAAGACCTCAGT+TGG 0.527215 8_4:+11216827 Msa1313320:CDS
GTCATGTGCCTCAAGAGTGA+TGG 0.534046 8_4:-11218584 None:intergenic
TTGTATGACTTGAGACAGAC+TGG 0.534466 8_4:+11217905 Msa1313320:CDS
ATTGCAAAACTTCTTCCTCA+AGG 0.544908 8_4:-11214974 None:intergenic
TAGGGATCGAGGTTGACGAT+TGG 0.545131 8_4:+11215131 Msa1313320:intron
TTGCAAAACTTCTTCCTCAA+GGG 0.558766 8_4:-11214973 None:intergenic
TCATGTGCCTCAAGAGTGAT+GGG 0.565189 8_4:-11218583 None:intergenic
ACTTCTTCCTCAAGGGATCA+CGG 0.570205 8_4:-11214966 None:intergenic
GATTGGAGAAACACTGTGTA+TGG 0.578297 8_4:+11215148 Msa1313320:CDS
TTTCCAGGTTCGGGAAATGG+TGG 0.580933 8_4:+11218339 Msa1313320:intron
TAATCATTCATTAGGGATCG+AGG 0.609654 8_4:+11215120 Msa1313320:intron
AAGTGCGAGAATCTCTTCGA+AGG 0.630613 8_4:-11215285 None:intergenic
TTCGGAACCCATCACTCTTG+AGG 0.631350 8_4:+11218576 Msa1313320:CDS
AGTTAATGTGAATGAAATTG+AGG 0.637849 8_4:+11215437 Msa1313320:intron
TATGAAGGAAGAGCTTACAT+TGG 0.647597 8_4:+11216805 Msa1313320:intron
ATTCTGACCGTGATCCCTTG+AGG 0.648094 8_4:+11214959 Msa1313320:five_prime_UTR
AGTTGTTCAATCATCGACGA+TGG 0.653713 8_4:+11215486 Msa1313320:CDS
GAAAAGATTCTTGCCAACTG+AGG 0.667115 8_4:-11216840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAATAAAAAGCTAA+TGG - chr8_4:11215878-11215897 None:intergenic 10.0%
!!! TTTATTTTTGTCTTTTTCAA+TGG - chr8_4:11214940-11214959 None:intergenic 15.0%
!! TAAATAAATAGAAGTTTAAC+AGG - chr8_4:11216091-11216110 None:intergenic 15.0%
!! TGTTAAATTAATTAAGTGAT+TGG + chr8_4:11216339-11216358 Msa1313320:intron 15.0%
!! AATAATAAATAAGGAGTAAA+CGG - chr8_4:11216546-11216565 None:intergenic 15.0%
!!! TGTACTGATAATAATAAATA+AGG - chr8_4:11216555-11216574 None:intergenic 15.0%
!! GTACTCAATTATAAATATAA+AGG - chr8_4:11217634-11217653 None:intergenic 15.0%
!!! AAAGATCAATTATATTTTCT+TGG + chr8_4:11217860-11217879 Msa1313320:intron 15.0%
!!! TTCCAAAAGTTTTAATAATT+TGG + chr8_4:11218046-11218065 Msa1313320:intron 15.0%
!!! TCCAAAAGTTTTAATAATTT+GGG + chr8_4:11218047-11218066 Msa1313320:intron 15.0%
!!! TATATTTTAAGTGACAAATA+TGG + chr8_4:11218075-11218094 Msa1313320:intron 15.0%
!!! ATATTTTAAGTGACAAATAT+GGG + chr8_4:11218076-11218095 Msa1313320:intron 15.0%
!!! TTTTCTTTTTTTTTTTTGGT+GGG - chr8_4:11218114-11218133 None:intergenic 15.0%
!! ACCAAAAAAAAAAAAGAAAA+GGG + chr8_4:11218114-11218133 Msa1313320:intron 15.0%
!!! ATCATTATTATTATTTTTGG+CGG + chr8_4:11218182-11218201 Msa1313320:intron 15.0%
!! TTAGTAAACATATAAGTATT+GGG - chr8_4:11218288-11218307 None:intergenic 15.0%
!! ATTAGTAAACATATAAGTAT+TGG - chr8_4:11218289-11218308 None:intergenic 15.0%
!!! TTTTTTTAAATGTTACCTAA+AGG - chr8_4:11218479-11218498 None:intergenic 15.0%
!! ATGATGATTATTGAATTTCT+CGG - chr8_4:11215070-11215089 None:intergenic 20.0%
!!! TTTGTTGTTAATCATTCATT+AGG + chr8_4:11215112-11215131 Msa1313320:intron 20.0%
!!! TTGTTGTTAATCATTCATTA+GGG + chr8_4:11215113-11215132 Msa1313320:intron 20.0%
!! TTAGTTAGTTAATTACTTTG+TGG - chr8_4:11215518-11215537 None:intergenic 20.0%
!!! AAATAAGTTGAAAATGTGTT+TGG - chr8_4:11215633-11215652 None:intergenic 20.0%
!! AAAAATAACTTATACACAAG+TGG - chr8_4:11215753-11215772 None:intergenic 20.0%
!! ATCAATTTCAAAATATGAGT+GGG - chr8_4:11215998-11216017 None:intergenic 20.0%
!! AAATATTTCAGAACATTACA+TGG - chr8_4:11216180-11216199 None:intergenic 20.0%
!!! TCATTTTTCACCAAATAATT+TGG - chr8_4:11216225-11216244 None:intergenic 20.0%
!!! AAGTCAATTTTTTATTTGCA+AGG + chr8_4:11216958-11216977 Msa1313320:intron 20.0%
!! ATTAAGATTGAATATGCTTT+GGG - chr8_4:11217117-11217136 None:intergenic 20.0%
!! AATTAAGATTGAATATGCTT+TGG - chr8_4:11217118-11217137 None:intergenic 20.0%
!!! TATTTGTATAAAAGTATCCA+AGG + chr8_4:11217479-11217498 Msa1313320:intron 20.0%
!!! ATTTGTATAAAAGTATCCAA+GGG + chr8_4:11217480-11217499 Msa1313320:intron 20.0%
!! AACGTCAAATAAAAAAGAAA+AGG - chr8_4:11217601-11217620 None:intergenic 20.0%
!! TTGTTTGTAAAAAATTACCT+AGG + chr8_4:11217660-11217679 Msa1313320:intron 20.0%
!!! ACCCAAATTATTAAAACTTT+TGG - chr8_4:11218051-11218070 None:intergenic 20.0%
!!! CTTTTCTTTTTTTTTTTTGG+TGG - chr8_4:11218115-11218134 None:intergenic 20.0%
!! CACCAAAAAAAAAAAAGAAA+AGG + chr8_4:11218113-11218132 Msa1313320:intron 20.0%
!!! TCCCTTTTCTTTTTTTTTTT+TGG - chr8_4:11218118-11218137 None:intergenic 20.0%
!! AACAATTACCTTATCAATAA+TGG - chr8_4:11218416-11218435 None:intergenic 20.0%
!!! TTTGTCTTTTTCAATGGATT+TGG - chr8_4:11214934-11214953 None:intergenic 25.0%
! AGTTAATGTGAATGAAATTG+AGG + chr8_4:11215437-11215456 Msa1313320:intron 25.0%
! ATATGATAACAACATGACTT+TGG + chr8_4:11215670-11215689 Msa1313320:intron 25.0%
! GTAAAACAATAAGTTTCCAT+TGG - chr8_4:11215967-11215986 None:intergenic 25.0%
! TCAATTTCAAAATATGAGTG+GGG - chr8_4:11215997-11216016 None:intergenic 25.0%
! CATCAATTTCAAAATATGAG+TGG - chr8_4:11215999-11216018 None:intergenic 25.0%
!!! CACTCATATTTTGAAATTGA+TGG + chr8_4:11215997-11216016 Msa1313320:intron 25.0%
! AATGTAAAACTGAATTACAC+TGG + chr8_4:11216056-11216075 Msa1313320:intron 25.0%
!! AATTCCATCTTTTCATATTG+TGG + chr8_4:11216125-11216144 Msa1313320:intron 25.0%
! TGAATATCCTCCAAATTATT+TGG + chr8_4:11216212-11216231 Msa1313320:intron 25.0%
!! TTTTTCACCAAATAATTTGG+AGG - chr8_4:11216222-11216241 None:intergenic 25.0%
!! TATTTGGTGAAAAATGAATC+TGG + chr8_4:11216228-11216247 Msa1313320:intron 25.0%
! TAATCTTTAGTAGACTATCT+TGG + chr8_4:11216489-11216508 Msa1313320:intron 25.0%
! TAAAGACAAAAAACTGTGTT+TGG + chr8_4:11216695-11216714 Msa1313320:intron 25.0%
! CCTACTTGAATACAAAAATT+GGG - chr8_4:11217001-11217020 None:intergenic 25.0%
! TCCTACTTGAATACAAAAAT+TGG - chr8_4:11217002-11217021 None:intergenic 25.0%
!!! TTTTATTTTACAGATTCCCA+GGG - chr8_4:11217093-11217112 None:intergenic 25.0%
! TTAAGATTGAATATGCTTTG+GGG - chr8_4:11217116-11217135 None:intergenic 25.0%
! AGCATAAAAAACACGAAAAT+GGG - chr8_4:11217393-11217412 None:intergenic 25.0%
! AAGCATAAAAAACACGAAAA+TGG - chr8_4:11217394-11217413 None:intergenic 25.0%
!!! ATTTTCGTGTTTTTTATGCT+TGG + chr8_4:11217393-11217412 Msa1313320:intron 25.0%
! CTCTTTGATGAAAAAAAGAA+TGG + chr8_4:11217691-11217710 Msa1313320:CDS 25.0%
!! CAATCAATTTTCTTTTCCAA+AGG - chr8_4:11217772-11217791 None:intergenic 25.0%
! CTTATATGTTTACTAATGCT+CGG + chr8_4:11218292-11218311 Msa1313320:intron 25.0%
! TTGATAAGGTAATTGTTTGT+TGG + chr8_4:11218419-11218438 Msa1313320:intron 25.0%
! TTGTTTAAGTCTAATCCTTT+AGG + chr8_4:11218461-11218480 Msa1313320:intron 25.0%
! GATTCAAACTTTTCCACTTT+CGG - chr8_4:11214900-11214919 None:intergenic 30.0%
!!! CTTTTTCAATGGATTTGGAT+TGG - chr8_4:11214929-11214948 None:intergenic 30.0%
!! TCATCAGCTTTTGTTTGTTT+AGG + chr8_4:11215344-11215363 Msa1313320:intron 30.0%
! AAAAAGCAGAGGTTTTTCAT+TGG + chr8_4:11216028-11216047 Msa1313320:intron 30.0%
TAGTTGTTGGATCAATCTAT+TGG + chr8_4:11216298-11216317 Msa1313320:intron 30.0%
!! CAAAGGATTTTTCAACAACA+TGG - chr8_4:11216417-11216436 None:intergenic 30.0%
GTTGTTGAAAAATCCTTTGA+AGG + chr8_4:11216418-11216437 Msa1313320:intron 30.0%
! ATCCTTTGAAGGACTATTTA+TGG + chr8_4:11216429-11216448 Msa1313320:intron 30.0%
TAATCTATGAGGAGCTAATT+TGG + chr8_4:11216460-11216479 Msa1313320:intron 30.0%
TGATTCAGTCGATTAAAGAT+CGG - chr8_4:11216522-11216541 None:intergenic 30.0%
TCACATCATTTCATTGAAGT+TGG - chr8_4:11216608-11216627 None:intergenic 30.0%
TAACAACTTAGATTGTGATC+TGG + chr8_4:11216631-11216650 Msa1313320:intron 30.0%
AACAACTTAGATTGTGATCT+GGG + chr8_4:11216632-11216651 Msa1313320:intron 30.0%
! TTTTCATTTTCCCTCTATGA+AGG + chr8_4:11216790-11216809 Msa1313320:intron 30.0%
! CAAGAATCTTTTCCTTGATA+GGG + chr8_4:11216850-11216869 Msa1313320:CDS 30.0%
AAAATGCTTATACCCTATCA+AGG - chr8_4:11216865-11216884 None:intergenic 30.0%
! TTTTCTTGATCTCATTTGTG+AGG + chr8_4:11216923-11216942 Msa1313320:intron 30.0%
! CCCAATTTTTGTATTCAAGT+AGG + chr8_4:11216998-11217017 Msa1313320:intron 30.0%
GTGTGAACAAAATGAAAGTA+GGG - chr8_4:11217040-11217059 None:intergenic 30.0%
!!! GTTTTATTTTACAGATTCCC+AGG - chr8_4:11217094-11217113 None:intergenic 30.0%
! ATTTAAGACCTAAGTTTGTG+AGG - chr8_4:11217166-11217185 None:intergenic 30.0%
TAGGTCTTAAATTGTTGTGA+TGG + chr8_4:11217174-11217193 Msa1313320:intron 30.0%
TACTAAGAGAACAAAAAGCT+AGG - chr8_4:11217213-11217232 None:intergenic 30.0%
GCATAAAAAACACGAAAATG+GGG - chr8_4:11217392-11217411 None:intergenic 30.0%
!!! TTTTTTATGCTTGGATCCAA+GGG + chr8_4:11217402-11217421 Msa1313320:intron 30.0%
!! TATAAAAGTATCCAAGGGAA+TGG + chr8_4:11217485-11217504 Msa1313320:intron 30.0%
!! ATAAAAGTATCCAAGGGAAT+GGG + chr8_4:11217486-11217505 Msa1313320:intron 30.0%
!! GAATGGTGTTATAGAATTTG+AGG + chr8_4:11217708-11217727 Msa1313320:CDS 30.0%
!! TTCTTTTCCAAAGGAGTATA+AGG - chr8_4:11217763-11217782 None:intergenic 30.0%
!!! CTGTTTTAGTATCATCAGTA+TGG + chr8_4:11217834-11217853 Msa1313320:intron 30.0%
CACTAGAGCAATATTATTCT+AGG - chr8_4:11217972-11217991 None:intergenic 30.0%
CATTGAAGATGTACTAAACT+CGG + chr8_4:11218214-11218233 Msa1313320:intron 30.0%
!! CCTTATCAATAATGGATTCA+AGG - chr8_4:11218408-11218427 None:intergenic 30.0%
CCTTGAATCCATTATTGATA+AGG + chr8_4:11218405-11218424 Msa1313320:CDS 30.0%
ATAAGATCAGTAAAGAAGAG+TGG + chr8_4:11218540-11218559 Msa1313320:CDS 30.0%
TTGCAAAACTTCTTCCTCAA+GGG - chr8_4:11214976-11214995 None:intergenic 35.0%
ATTGCAAAACTTCTTCCTCA+AGG - chr8_4:11214977-11214996 None:intergenic 35.0%
!! TTTGCAATGCTGAGTTGATA+TGG + chr8_4:11214989-11215008 Msa1313320:exon 35.0%
TAATCATTCATTAGGGATCG+AGG + chr8_4:11215120-11215139 Msa1313320:intron 35.0%
ATGGTGTTCATTCCATTGAT+TGG + chr8_4:11215167-11215186 Msa1313320:CDS 35.0%
AACTTTACCAACCTCACAAA+TGG - chr8_4:11215603-11215622 None:intergenic 35.0%
AACATGACTTTGGCACTATT+TGG + chr8_4:11215680-11215699 Msa1313320:intron 35.0%
! GCTAAGCTCTAATAATCCAA+TGG + chr8_4:11215948-11215967 Msa1313320:intron 35.0%
TGGTATGAGATAAAAAGCAG+AGG + chr8_4:11216017-11216036 Msa1313320:intron 35.0%
!!! TAGCAGCATTTTGACTTCAA+AGG - chr8_4:11216256-11216275 None:intergenic 35.0%
CCAACAACTAACATTGTAGA+TGG - chr8_4:11216288-11216307 None:intergenic 35.0%
CCATCTACAATGTTAGTTGT+TGG + chr8_4:11216285-11216304 Msa1313320:intron 35.0%
!!! TTTTCGTTTTTGAGTTCTGC+CGG + chr8_4:11216370-11216389 Msa1313320:intron 35.0%
! TTTTCAACAACATGGATCCT+CGG - chr8_4:11216409-11216428 None:intergenic 35.0%
CACCATAAATAGTCCTTCAA+AGG - chr8_4:11216434-11216453 None:intergenic 35.0%
! TGGTGATGCTTTAATCTATG+AGG + chr8_4:11216449-11216468 Msa1313320:intron 35.0%
TATGAAGGAAGAGCTTACAT+TGG + chr8_4:11216805-11216824 Msa1313320:intron 35.0%
! GCAAGAATCTTTTCCTTGAT+AGG + chr8_4:11216849-11216868 Msa1313320:CDS 35.0%
ACAAAAATTGGGTTCCTAAC+AGG - chr8_4:11216990-11217009 None:intergenic 35.0%
GGTGTGAACAAAATGAAAGT+AGG - chr8_4:11217041-11217060 None:intergenic 35.0%
GAACATCATCTCATACAACT+GGG - chr8_4:11217357-11217376 None:intergenic 35.0%
AGAACATCATCTCATACAAC+TGG - chr8_4:11217358-11217377 None:intergenic 35.0%
!!! GTTTTTTATGCTTGGATCCA+AGG + chr8_4:11217401-11217420 Msa1313320:intron 35.0%
!! TAAAAGTATCCAAGGGAATG+GGG + chr8_4:11217487-11217506 Msa1313320:intron 35.0%
ATCAAAGAGATCAAACACCT+AGG - chr8_4:11217680-11217699 None:intergenic 35.0%
CTTTCATCCTTATACTCCTT+TGG + chr8_4:11217753-11217772 Msa1313320:CDS 35.0%
ACGAGAAGAAGTAAGTATCT+TGG + chr8_4:11217937-11217956 Msa1313320:intron 35.0%
CGAGTTTAGTACATCTTCAA+TGG - chr8_4:11218216-11218235 None:intergenic 35.0%
CTTATCATCTTTGTCAGCAT+CGG - chr8_4:11218525-11218544 None:intergenic 35.0%
!! AGTGGAAAGCATTTGTCATT+CGG + chr8_4:11218558-11218577 Msa1313320:CDS 35.0%
GGAAGAAAGCTCTTTATCTC+TGG + chr8_4:11215010-11215029 Msa1313320:CDS 40.0%
GATTGGAGAAACACTGTGTA+TGG + chr8_4:11215148-11215167 Msa1313320:CDS 40.0%
GCTTCAGCTATACCAATCAA+TGG - chr8_4:11215182-11215201 None:intergenic 40.0%
!!! GCTTTGTTTTACAGCTTAGC+TGG + chr8_4:11215200-11215219 Msa1313320:CDS 40.0%
! TAGCTGGTTGCTTCGATTTT+CGG + chr8_4:11215216-11215235 Msa1313320:CDS 40.0%
AGAGAACGAAGAAACGAACA+AGG - chr8_4:11215323-11215342 None:intergenic 40.0%
AGTTGTTCAATCATCGACGA+TGG + chr8_4:11215486-11215505 Msa1313320:CDS 40.0%
TACTTATGCGACCATTTGTG+AGG + chr8_4:11215589-11215608 Msa1313320:intron 40.0%
AAAATATGAGTGGGGTGATG+GGG - chr8_4:11215989-11216008 None:intergenic 40.0%
CAAAATATGAGTGGGGTGAT+GGG - chr8_4:11215990-11216009 None:intergenic 40.0%
TCAAAATATGAGTGGGGTGA+TGG - chr8_4:11215991-11216010 None:intergenic 40.0%
GCGACCACAATATGAAAAGA+TGG - chr8_4:11216132-11216151 None:intergenic 40.0%
! CTTAGATTGTGATCTGGGAT+CGG + chr8_4:11216637-11216656 Msa1313320:intron 40.0%
! TTAGATTGTGATCTGGGATC+GGG + chr8_4:11216638-11216657 Msa1313320:intron 40.0%
!! TGTTTGGTGTTGACTCTGTT+AGG + chr8_4:11216711-11216730 Msa1313320:intron 40.0%
TCTGACCAGAAATTCAACAC+TGG - chr8_4:11216753-11216772 None:intergenic 40.0%
GTAAGCTCTTCCTTCATAGA+GGG - chr8_4:11216803-11216822 None:intergenic 40.0%
TGTAAGCTCTTCCTTCATAG+AGG - chr8_4:11216804-11216823 None:intergenic 40.0%
GAAAAGATTCTTGCCAACTG+AGG - chr8_4:11216843-11216862 None:intergenic 40.0%
TTGCAAGGAAAACACCTGTT+AGG + chr8_4:11216973-11216992 Msa1313320:intron 40.0%
ACCACTCAATCTATTCCTAC+TGG + chr8_4:11217058-11217077 Msa1313320:intron 40.0%
CATCTCATACAACTGGGATA+TGG - chr8_4:11217351-11217370 None:intergenic 40.0%
!! TTCTTTCTCTCTAGAACCCT+TGG - chr8_4:11217421-11217440 None:intergenic 40.0%
!! AGGGTTCTAGAGAGAAAGAA+AGG + chr8_4:11217421-11217440 Msa1313320:intron 40.0%
TTGTATGACTTGAGACAGAC+TGG + chr8_4:11217905-11217924 Msa1313320:CDS 40.0%
GGTTCTTATAACCACCATGA+GGG + chr8_4:11218235-11218254 Msa1313320:intron 40.0%
ATAAAAAAGCAGAGCCCTCA+TGG - chr8_4:11218252-11218271 None:intergenic 40.0%
!! GTTATCCTGCAACTTTTTCC+AGG + chr8_4:11218324-11218343 Msa1313320:intron 40.0%
!!! GTTGCCATTTTGTCAGAATG+TGG + chr8_4:11218361-11218380 Msa1313320:CDS 40.0%
CATGCCACATTCTGACAAAA+TGG - chr8_4:11218368-11218387 None:intergenic 40.0%
! CATTTTGTCAGAATGTGGCA+TGG + chr8_4:11218366-11218385 Msa1313320:CDS 40.0%
ACTTCTTCCTCAAGGGATCA+CGG - chr8_4:11214969-11214988 None:intergenic 45.0%
AAGTGCGAGAATCTCTTCGA+AGG - chr8_4:11215288-11215307 None:intergenic 45.0%
TATGCGACCATTTGTGAGGT+TGG + chr8_4:11215593-11215612 Msa1313320:intron 45.0%
! TGAGTTCTGCCGGAACATTT+TGG + chr8_4:11216380-11216399 Msa1313320:intron 45.0%
GAAGTTGGCAACTTAGAGCA+TGG - chr8_4:11216593-11216612 None:intergenic 45.0%
CAGAAATTCAACACTGGTGC+TGG - chr8_4:11216747-11216766 None:intergenic 45.0%
! CAGCACCAGTGTTGAATTTC+TGG + chr8_4:11216745-11216764 Msa1313320:intron 45.0%
GCACTATTGAAGACCTCAGT+TGG + chr8_4:11216827-11216846 Msa1313320:CDS 45.0%
GCCAGTAGGAATAGATTGAG+TGG - chr8_4:11217062-11217081 None:intergenic 45.0%
TGTGAGGCAAGGCAACAATT+AGG - chr8_4:11217150-11217169 None:intergenic 45.0%
TTGCCTTGCCTCACAAACTT+AGG + chr8_4:11217155-11217174 Msa1313320:intron 45.0%
AGACCTAAGTTTGTGAGGCA+AGG - chr8_4:11217161-11217180 None:intergenic 45.0%
CGGTTCTTATAACCACCATG+AGG + chr8_4:11218234-11218253 Msa1313320:intron 45.0%
!! CCTGCAACTTTTTCCAGGTT+CGG + chr8_4:11218329-11218348 Msa1313320:intron 45.0%
!! CTGCAACTTTTTCCAGGTTC+GGG + chr8_4:11218330-11218349 Msa1313320:intron 45.0%
! CTTTTTCCAGGTTCGGGAAA+TGG + chr8_4:11218336-11218355 Msa1313320:intron 45.0%
TCATGTGCCTCAAGAGTGAT+GGG - chr8_4:11218586-11218605 None:intergenic 45.0%
!!! AAAATCATTATTATTATTTT+TGG + chr8_4:11218179-11218198 Msa1313320:intron 5.0%
ATTCTGACCGTGATCCCTTG+AGG + chr8_4:11214959-11214978 Msa1313320:five_prime_UTR 50.0%
TAGGGATCGAGGTTGACGAT+TGG + chr8_4:11215131-11215150 Msa1313320:intron 50.0%
TCAACAACATGGATCCTCGG+TGG - chr8_4:11216406-11216425 None:intergenic 50.0%
! CTACTGGCACTTTTCACCCT+GGG + chr8_4:11217074-11217093 Msa1313320:intron 50.0%
! TCCAAGGGAATGGGGCATTA+AGG + chr8_4:11217495-11217514 Msa1313320:intron 50.0%
ACCTTAATGCCCCATTCCCT+TGG - chr8_4:11217499-11217518 None:intergenic 50.0%
AAAAAGCAGAGCCCTCATGG+TGG - chr8_4:11218249-11218268 None:intergenic 50.0%
CCGAACCTGGAAAAAGTTGC+AGG - chr8_4:11218332-11218351 None:intergenic 50.0%
TTTCCAGGTTCGGGAAATGG+TGG + chr8_4:11218339-11218358 Msa1313320:intron 50.0%
TTCGGAACCCATCACTCTTG+AGG + chr8_4:11218576-11218595 Msa1313320:CDS 50.0%
GTCATGTGCCTCAAGAGTGA+TGG - chr8_4:11218587-11218606 None:intergenic 50.0%
CCTCGGTGGCCAAAATGTTC+CGG - chr8_4:11216392-11216411 None:intergenic 55.0%
!! CCAGGGTGAAAAGTGCCAGT+AGG - chr8_4:11217076-11217095 None:intergenic 55.0%
! CCTACTGGCACTTTTCACCC+TGG + chr8_4:11217073-11217092 Msa1313320:intron 55.0%
CAACCACCATTTCCCGAACC+TGG - chr8_4:11218345-11218364 None:intergenic 55.0%
!! CCGGAACATTTTGGCCACCG+AGG + chr8_4:11216389-11216408 Msa1313320:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 11214897 11218625 11214897 ID=Msa1313320;Name=Msa1313320
chr8_4 mRNA 11214897 11218625 11214897 ID=Msa1313320-mRNA-1;Parent=Msa1313320;Name=Msa1313320-mRNA-1;_AED=0.20;_eAED=0.20;_QI=111|1|0.87|1|1|1|8|0|238
chr8_4 exon 11214897 11215031 11214897 ID=Msa1313320-mRNA-1:exon:4187;Parent=Msa1313320-mRNA-1
chr8_4 exon 11215134 11215323 11215134 ID=Msa1313320-mRNA-1:exon:4188;Parent=Msa1313320-mRNA-1
chr8_4 exon 11215439 11215521 11215439 ID=Msa1313320-mRNA-1:exon:4189;Parent=Msa1313320-mRNA-1
chr8_4 exon 11216812 11216871 11216812 ID=Msa1313320-mRNA-1:exon:4190;Parent=Msa1313320-mRNA-1
chr8_4 exon 11217682 11217790 11217682 ID=Msa1313320-mRNA-1:exon:4191;Parent=Msa1313320-mRNA-1
chr8_4 exon 11217894 11217946 11217894 ID=Msa1313320-mRNA-1:exon:4192;Parent=Msa1313320-mRNA-1
chr8_4 exon 11218346 11218426 11218346 ID=Msa1313320-mRNA-1:exon:4193;Parent=Msa1313320-mRNA-1
chr8_4 exon 11218509 11218625 11218509 ID=Msa1313320-mRNA-1:exon:4194;Parent=Msa1313320-mRNA-1
chr8_4 five_prime_UTR 11214897 11215007 11214897 ID=Msa1313320-mRNA-1:five_prime_utr;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11215008 11215031 11215008 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11215134 11215323 11215134 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11215439 11215521 11215439 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11216812 11216871 11216812 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11217682 11217790 11217682 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11217894 11217946 11217894 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11218346 11218426 11218346 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
chr8_4 CDS 11218509 11218625 11218509 ID=Msa1313320-mRNA-1:cds;Parent=Msa1313320-mRNA-1
Gene Sequence

>Msa1313320

ATGGAAGAAAGCTCTTTATCTCTGGGATCGAGGTTGACGATTGGAGAAACACTGTGTATGGTGTTCATTCCATTGATTGGTATAGCTGAAGCTTTGTTTTACAGCTTAGCTGGTTGCTTCGATTTTCGGAGTTCAGAGCAGAAGAAGAAAGAAAAAGAGAAGAAAATGTTTTCTACCTTCGAAGAGATTCTCGCACTTGCTAACGATTCTCCTTTTAATGTGAATGAAATTGAGGCGTTGCATGAGTTATACAAGAAGTTGAGTTGTTCAATCATCGACGATGGTCTCATCCACAAAGAAGAGCTTACATTGGCACTATTGAAGACCTCAGTTGGCAAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTTGATGAAAAAAAGAATGGTGTTATAGAATTTGAGGAGTTTGTGCATGCTCTCAGTGTCTTTCATCCTTATACTCCTTTGGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACTTGAGACAGACTGGATATATTGAACGAGAAGAAGTTCGGGAAATGGTGGTTGCCATTTTGTCAGAATGTGGCATGGATGTTGAAAATGAAATCCTTGAATCCATTATTGATAAGACATTTCAAGATGCCGATGCTGACAAAGATGATAAGATCAGTAAAGAAGAGTGGAAAGCATTTGTCATTCGGAACCCATCACTCTTGAGGCACATGACTCTTCCTAATCTGAAGTAA

Protein sequence

>Msa1313320

MEESSLSLGSRLTIGETLCMVFIPLIGIAEALFYSLAGCFDFRSSEQKKKEKEKKMFSTFEEILALANDSPFNVNEIEALHELYKKLSCSIIDDGLIHKEELTLALLKTSVGKNLFLDRVFDLFDEKKNGVIEFEEFVHALSVFHPYTPLEKKIDFAFRLYDLRQTGYIEREEVREMVVAILSECGMDVENEILESIIDKTFQDADADKDDKISKEEWKAFVIRNPSLLRHMTLPNLK*