Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004091.t1 | XP_004487038.1 | 97.4 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 4.50E-73 | 283.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004091.t1 | Q9AT35 | 87.0 | 154 | 19 | 1 | 1 | 153 | 1 | 154 | 1.3e-65 | 250.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004091.t1 | A0A1S2XC20 | 97.4 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 3.2e-73 | 283.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004091.t1 | MTR_4g063060 | 98.693 | 153 | 1 | 1 | 1 | 153 | 1 | 152 | 1.17e-103 | 293 |
| MS.gene004091.t1 | MTR_2g096340 | 96.689 | 151 | 5 | 0 | 3 | 153 | 4 | 154 | 4.98e-101 | 286 |
| MS.gene004091.t1 | MTR_2g096340 | 96.644 | 149 | 5 | 0 | 5 | 153 | 13 | 161 | 2.55e-99 | 282 |
| MS.gene004091.t1 | MTR_7g023260 | 92.053 | 151 | 12 | 0 | 3 | 153 | 4 | 154 | 1.65e-67 | 202 |
| MS.gene004091.t1 | MTR_4g007840 | 94.595 | 37 | 2 | 0 | 117 | 153 | 36 | 72 | 1.95e-18 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004091.t1 | AT3G55280 | 87.662 | 154 | 18 | 1 | 1 | 153 | 1 | 154 | 2.30e-70 | 209 |
| MS.gene004091.t1 | AT3G55280 | 87.662 | 154 | 18 | 1 | 1 | 153 | 1 | 154 | 2.30e-70 | 209 |
| MS.gene004091.t1 | AT2G39460 | 89.844 | 128 | 13 | 0 | 26 | 153 | 27 | 154 | 1.19e-66 | 199 |
| MS.gene004091.t1 | AT2G39460 | 89.844 | 128 | 13 | 0 | 26 | 153 | 27 | 154 | 1.19e-66 | 199 |
| MS.gene004091.t1 | AT3G55280 | 92.373 | 118 | 9 | 0 | 36 | 153 | 31 | 148 | 2.54e-66 | 199 |
Find 41 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCCCTTGTTTGTGTCTT+TGG | 0.162619 | 4.2:+42098102 | None:intergenic |
| GCTTTCAATGCCTGTGCCTT+TGG | 0.265621 | 4.2:+42098201 | None:intergenic |
| GGCACTGATGCGAGGATATT+TGG | 0.276630 | 4.2:+42098074 | None:intergenic |
| TATCCCTTGTTTGTGTCTTT+GGG | 0.296408 | 4.2:+42098103 | None:intergenic |
| CAACCTAACATAGGCCTTCT+TGG | 0.308307 | 4.2:+42097395 | None:intergenic |
| GCACTGATGCGAGGATATTT+GGG | 0.324549 | 4.2:+42098075 | None:intergenic |
| TAGTGGTCAAGCTTGTTTCT+TGG | 0.344862 | 4.2:+42098048 | None:intergenic |
| ACATCCAATGCATCGTAATC+AGG | 0.425991 | 4.2:+42097369 | None:intergenic |
| CAATGCCTGTGCCTTTGGAT+CGG | 0.450132 | 4.2:+42098206 | None:intergenic |
| AGGTGTTAACCTTCTTCGCC+TGG | 0.454264 | 4.2:+42097890 | None:intergenic |
| GCTGCCAAGGCAGTCAAGTC+AGG | 0.480557 | 4.2:-42098180 | MS.gene004091:CDS |
| GTCAAGCTTGTTTCTTGGTG+TGG | 0.490928 | 4.2:+42098053 | None:intergenic |
| GTACCAAGAAGGCCTATGTT+AGG | 0.503933 | 4.2:-42097398 | MS.gene004091:CDS |
| CATAAATGCTCACCTGATCA+AGG | 0.508831 | 4.2:+42097870 | None:intergenic |
| GGAACTTCAAAATCTGATAG+TGG | 0.511992 | 4.2:+42098031 | None:intergenic |
| TTGTTTGTGTCTTTGGGCGA+TGG | 0.513342 | 4.2:+42098109 | None:intergenic |
| AATTGAGGATAACAACACTT+TGG | 0.518687 | 4.2:-42097980 | MS.gene004091:CDS |
| ATAGGCCTTCTTGGTACCAT+CGG | 0.519310 | 4.2:+42097404 | None:intergenic |
| TTGGATGTAGCAAACAAGAT+TGG | 0.522533 | 4.2:-42097354 | MS.gene004091:CDS |
| GAAGAAAATGTATGACATCC+AGG | 0.526017 | 4.2:-42097908 | MS.gene004091:CDS |
| TGTGCCTGACTTGACTGCCT+TGG | 0.530575 | 4.2:+42098176 | None:intergenic |
| AGAAGGTTAACACCTTGATC+AGG | 0.531796 | 4.2:-42097882 | MS.gene004091:intron |
| AGGCACAGCTATTAAGAAGA+AGG | 0.535277 | 4.2:-42098160 | MS.gene004091:CDS |
| GACACCTGATTACGATGCAT+TGG | 0.535533 | 4.2:-42097373 | MS.gene004091:CDS |
| TAGGCCTTCTTGGTACCATC+GGG | 0.543529 | 4.2:+42097405 | None:intergenic |
| CAAAGACACAAACAAGGGAT+AGG | 0.544147 | 4.2:-42098101 | MS.gene004091:CDS |
| GTATGACATCCAGGCGAAGA+AGG | 0.560881 | 4.2:-42097899 | MS.gene004091:CDS |
| TTAATCTGTTGCAGGCCCGA+TGG | 0.562967 | 4.2:-42097420 | MS.gene004091:intron |
| ACAGGCATTGAAAGCTGCCA+AGG | 0.571400 | 4.2:-42098193 | MS.gene004091:CDS |
| GAAGACCGATCCAAAGGCAC+AGG | 0.572296 | 4.2:-42098211 | MS.gene004091:CDS |
| GTCCGCAATGAAGAAAATTG+AGG | 0.580232 | 4.2:-42097995 | MS.gene004091:CDS |
| CAGGCCCGATGGTACCAAGA+AGG | 0.589470 | 4.2:-42097409 | MS.gene004091:CDS |
| TTGCGGACTCAGTGGTGAGT+GGG | 0.598322 | 4.2:+42098010 | None:intergenic |
| TTCTAAGAAGACCGATCCAA+AGG | 0.610830 | 4.2:-42098217 | MS.gene004091:CDS |
| ATTGCGGACTCAGTGGTGAG+TGG | 0.611075 | 4.2:+42098009 | None:intergenic |
| TTTCTTCATTGCGGACTCAG+TGG | 0.615852 | 4.2:+42098002 | None:intergenic |
| CACTGATGCGAGGATATTTG+GGG | 0.617729 | 4.2:+42098076 | None:intergenic |
| CTTGGTGTGGCACTGATGCG+AGG | 0.626082 | 4.2:+42098066 | None:intergenic |
| ATCAGGTGTCAACCTAACAT+AGG | 0.641379 | 4.2:+42097386 | None:intergenic |
| ATCGCCCAAAGACACAAACA+AGG | 0.648974 | 4.2:-42098107 | MS.gene004091:CDS |
| TCGCCCAAAGACACAAACAA+GGG | 0.727590 | 4.2:-42098106 | MS.gene004091:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAACTATAATTTATCTT+TGG | + | chr4.2:42097928-42097947 | None:intergenic | 10.0% |
| !!! | TATTTTAATCAAATAATGCA+TGG | - | chr4.2:42098311-42098330 | MS.gene004091:intron | 15.0% |
| !!! | TTTTTACTAACAAAAATGAA+TGG | + | chr4.2:42097427-42097446 | None:intergenic | 15.0% |
| !! | AATCAAATCATACATGAAAA+TGG | + | chr4.2:42097543-42097562 | None:intergenic | 20.0% |
| !! | AGCATATGATATATCATTAA+GGG | + | chr4.2:42098199-42098218 | None:intergenic | 20.0% |
| !! | ATTAAAATATACTGAACCAA+AGG | + | chr4.2:42098300-42098319 | None:intergenic | 20.0% |
| !! | ATTATTATTATAGTTCAGCA+TGG | - | chr4.2:42099179-42099198 | MS.gene004091:intron | 20.0% |
| !!! | AGCTTAAATGAAAACAATTT+TGG | + | chr4.2:42097707-42097726 | None:intergenic | 20.0% |
| !!! | ATTGTTTTCATTTAAGCTTT+AGG | - | chr4.2:42097709-42097728 | MS.gene004091:intron | 20.0% |
| !!! | TCATGTATGATTTGATTTTA+AGG | - | chr4.2:42097546-42097565 | MS.gene004091:intron | 20.0% |
| ! | AGAAAATTGAAGTTACCTTT+AGG | + | chr4.2:42097353-42097372 | None:intergenic | 25.0% |
| ! | ATCAAATAATGCATGGAATT+AGG | - | chr4.2:42098318-42098337 | MS.gene004091:intron | 25.0% |
| ! | CAGCATATGATATATCATTA+AGG | + | chr4.2:42098200-42098219 | None:intergenic | 25.0% |
| ! | GATTTACAAATTTGAGCTTA+TGG | + | chr4.2:42097810-42097829 | None:intergenic | 25.0% |
| ! | TACAAATTATCTCAAATGTC+AGG | + | chr4.2:42098916-42098935 | None:intergenic | 25.0% |
| ! | TGATGAGCAAAAAAAAAGTT+AGG | - | chr4.2:42097605-42097624 | MS.gene004091:intron | 25.0% |
| ! | TGCTGATAAGAAAAAGATTA+AGG | - | chr4.2:42098714-42098733 | MS.gene004091:intron | 25.0% |
| !! | GATTAATACTGATTATCCAT+AGG | - | chr4.2:42098274-42098293 | MS.gene004091:intron | 25.0% |
| !! | TTCTAGTTGAATATGTGTTT+AGG | - | chr4.2:42099096-42099115 | MS.gene004091:intron | 25.0% |
| !!! | CATTATTTTCCACTGATTTA+AGG | - | chr4.2:42097378-42097397 | MS.gene004091:CDS | 25.0% |
| !!! | CTGAAGAACTTCTAAAATTA+AGG | - | chr4.2:42097750-42097769 | MS.gene004091:intron | 25.0% |
| !!! | CTTAATTTTAGAAGTTCTTC+AGG | + | chr4.2:42097752-42097771 | None:intergenic | 25.0% |
| !!! | GCTGTTTTTATAAGCTATAT+TGG | - | chr4.2:42097968-42097987 | MS.gene004091:CDS | 25.0% |
| AATAAGTTGCTTATCCAAAC+AGG | + | chr4.2:42097851-42097870 | None:intergenic | 30.0% | |
| AATTGAGGATAACAACACTT+TGG | - | chr4.2:42098672-42098691 | MS.gene004091:intron | 30.0% | |
| AGAAAACAGAAAACCATTGT+TGG | + | chr4.2:42099030-42099049 | None:intergenic | 30.0% | |
| ATGTCTGCAAAATATACTAC+TGG | + | chr4.2:42098941-42098960 | None:intergenic | 30.0% | |
| ATTAAGGTGAAACTAGTGTA+TGG | - | chr4.2:42097766-42097785 | MS.gene004091:intron | 30.0% | |
| ATTTATGCAGTTACTGTTCA+AGG | - | chr4.2:42098798-42098817 | MS.gene004091:intron | 30.0% | |
| TTAGGCATTAATACCAACAA+TGG | - | chr4.2:42099014-42099033 | MS.gene004091:intron | 30.0% | |
| TTGGAGAACTTATGAAAACA+AGG | - | chr4.2:42098066-42098085 | MS.gene004091:CDS | 30.0% | |
| ! | ATCCTCAATTTTCTTCATTG+CGG | + | chr4.2:42098662-42098681 | None:intergenic | 30.0% |
| ! | TTCTAGTTGAATACGTGTTT+AGG | - | chr4.2:42098996-42099015 | MS.gene004091:intron | 30.0% |
| !!! | TTTTTTGCTCATCATAACTC+AGG | + | chr4.2:42097599-42097618 | None:intergenic | 30.0% |
| AATTACGCTTACATCCTGTT+TGG | - | chr4.2:42097834-42097853 | MS.gene004091:intron | 35.0% | |
| AGCACATAACCTTAAATCAG+TGG | + | chr4.2:42097390-42097409 | None:intergenic | 35.0% | |
| GAAGAAAATGTATGACATCC+AGG | - | chr4.2:42098744-42098763 | MS.gene004091:intron | 35.0% | |
| GCATAGTTATGCTATGATCA+GGG | - | chr4.2:42099118-42099137 | MS.gene004091:intron | 35.0% | |
| GGAACTTCAAAATCTGATAG+TGG | + | chr4.2:42098624-42098643 | None:intergenic | 35.0% | |
| TATATCATTAAGGGCCTGTT+TGG | + | chr4.2:42098190-42098209 | None:intergenic | 35.0% | |
| TTGGATGTAGCAAACAAGAT+TGG | - | chr4.2:42099298-42099317 | MS.gene004091:intron | 35.0% | |
| ! | ATACGTTTTGTGAGACTGTT+TGG | + | chr4.2:42098139-42098158 | None:intergenic | 35.0% |
| ! | CAGGATGTAAGCGTAATTTT+CGG | + | chr4.2:42097832-42097851 | None:intergenic | 35.0% |
| ! | TATCCCTTGTTTGTGTCTTT+GGG | + | chr4.2:42098552-42098571 | None:intergenic | 35.0% |
| ! | TCGACTTTTTAATCTGTTGC+AGG | - | chr4.2:42099224-42099243 | MS.gene004091:intron | 35.0% |
| !! | AGACATACCGAACCATTTTT+GGG | - | chr4.2:42098955-42098974 | MS.gene004091:intron | 35.0% |
| AAACCGCCAAAACCCAAAAA+TGG | + | chr4.2:42098970-42098989 | None:intergenic | 40.0% | |
| ACATCCAATGCATCGTAATC+AGG | + | chr4.2:42099286-42099305 | None:intergenic | 40.0% | |
| ACCCTAACAAAACATGCGAA+GGG | + | chr4.2:42098889-42098908 | None:intergenic | 40.0% | |
| ACTGATTATCCATAGGCCTT+TGG | - | chr4.2:42098281-42098300 | MS.gene004091:intron | 40.0% | |
| AGAAGGTTAACACCTTGATC+AGG | - | chr4.2:42098770-42098789 | MS.gene004091:intron | 40.0% | |
| AGGCACAGCTATTAAGAAGA+AGG | - | chr4.2:42098492-42098511 | MS.gene004091:intron | 40.0% | |
| ATCAGGTGTCAACCTAACAT+AGG | + | chr4.2:42099269-42099288 | None:intergenic | 40.0% | |
| CAAAGACACAAACAAGGGAT+AGG | - | chr4.2:42098551-42098570 | MS.gene004091:intron | 40.0% | |
| CATAAATGCTCACCTGATCA+AGG | + | chr4.2:42098785-42098804 | None:intergenic | 40.0% | |
| CTGCGCAAAAACATTGCATA+AGG | + | chr4.2:42098408-42098427 | None:intergenic | 40.0% | |
| GAGTTTGTAAGCGACTGTTT+AGG | - | chr4.2:42097568-42097587 | MS.gene004091:intron | 40.0% | |
| GCCAAAACCCAAAAATGGTT+CGG | + | chr4.2:42098965-42098984 | None:intergenic | 40.0% | |
| GGCATAGTTATGCTATGATC+AGG | - | chr4.2:42099117-42099136 | MS.gene004091:intron | 40.0% | |
| GTCCGCAATGAAGAAAATTG+AGG | - | chr4.2:42098657-42098676 | MS.gene004091:intron | 40.0% | |
| TACCCTAACAAAACATGCGA+AGG | + | chr4.2:42098890-42098909 | None:intergenic | 40.0% | |
| TATACTGAACCAAAGGCCTA+TGG | + | chr4.2:42098293-42098312 | None:intergenic | 40.0% | |
| TCAAAGAAGCCAATCCAAAC+AGG | - | chr4.2:42098173-42098192 | MS.gene004091:CDS | 40.0% | |
| ! | CAGACATACCGAACCATTTT+TGG | - | chr4.2:42098954-42098973 | MS.gene004091:intron | 40.0% |
| ! | CTATCCCTTGTTTGTGTCTT+TGG | + | chr4.2:42098553-42098572 | None:intergenic | 40.0% |
| ! | TAGTGGTCAAGCTTGTTTCT+TGG | + | chr4.2:42098607-42098626 | None:intergenic | 40.0% |
| ! | TTCTAAGAAGACCGATCCAA+AGG | - | chr4.2:42098435-42098454 | MS.gene004091:intron | 40.0% |
| !! | ACCCTTCGCATGTTTTGTTA+GGG | - | chr4.2:42098885-42098904 | MS.gene004091:intron | 40.0% |
| !! | CTTATGCAATGTTTTTGCGC+AGG | - | chr4.2:42098406-42098425 | MS.gene004091:intron | 40.0% |
| !! | TACCCTTCGCATGTTTTGTT+AGG | - | chr4.2:42098884-42098903 | MS.gene004091:intron | 40.0% |
| !!! | ACCGAACCATTTTTGGGTTT+TGG | - | chr4.2:42098961-42098980 | MS.gene004091:intron | 40.0% |
| !!! | GAACCATTTTTGGGTTTTGG+CGG | - | chr4.2:42098964-42098983 | MS.gene004091:intron | 40.0% |
| ATAGGCCTTCTTGGTACCAT+CGG | + | chr4.2:42099251-42099270 | None:intergenic | 45.0% | |
| ATCGCCCAAAGACACAAACA+AGG | - | chr4.2:42098545-42098564 | MS.gene004091:intron | 45.0% | |
| CAACCTAACATAGGCCTTCT+TGG | + | chr4.2:42099260-42099279 | None:intergenic | 45.0% | |
| CACTGATGCGAGGATATTTG+GGG | + | chr4.2:42098579-42098598 | None:intergenic | 45.0% | |
| CATTAAGGGCCTGTTTGGAT+TGG | + | chr4.2:42098185-42098204 | None:intergenic | 45.0% | |
| GACACCTGATTACGATGCAT+TGG | - | chr4.2:42099279-42099298 | MS.gene004091:intron | 45.0% | |
| GTACCAAGAAGGCCTATGTT+AGG | - | chr4.2:42099254-42099273 | MS.gene004091:intron | 45.0% | |
| TCGCCCAAAGACACAAACAA+GGG | - | chr4.2:42098546-42098565 | MS.gene004091:intron | 45.0% | |
| TTGTTTGTGTCTTTGGGCGA+TGG | + | chr4.2:42098546-42098565 | None:intergenic | 45.0% | |
| TTTCTTCATTGCGGACTCAG+TGG | + | chr4.2:42098653-42098672 | None:intergenic | 45.0% | |
| ! | GCACTGATGCGAGGATATTT+GGG | + | chr4.2:42098580-42098599 | None:intergenic | 45.0% |
| ! | GTCAAGCTTGTTTCTTGGTG+TGG | + | chr4.2:42098602-42098621 | None:intergenic | 45.0% |
| AGGTGTTAACCTTCTTCGCC+TGG | + | chr4.2:42098765-42098784 | None:intergenic | 50.0% | |
| CAATGCCTGTGCCTTTGGAT+CGG | + | chr4.2:42098449-42098468 | None:intergenic | 50.0% | |
| GCTTTCAATGCCTGTGCCTT+TGG | + | chr4.2:42098454-42098473 | None:intergenic | 50.0% | |
| GTATGACATCCAGGCGAAGA+AGG | - | chr4.2:42098753-42098772 | MS.gene004091:intron | 50.0% | |
| TAGGCCTTCTTGGTACCATC+GGG | + | chr4.2:42099250-42099269 | None:intergenic | 50.0% | |
| TTAATCTGTTGCAGGCCCGA+TGG | - | chr4.2:42099232-42099251 | MS.gene004091:intron | 50.0% | |
| !! | ACAGGCATTGAAAGCTGCCA+AGG | - | chr4.2:42098459-42098478 | MS.gene004091:intron | 50.0% |
| !! | GGCACTGATGCGAGGATATT+TGG | + | chr4.2:42098581-42098600 | None:intergenic | 50.0% |
| ATTGCGGACTCAGTGGTGAG+TGG | + | chr4.2:42098646-42098665 | None:intergenic | 55.0% | |
| TTGCGGACTCAGTGGTGAGT+GGG | + | chr4.2:42098645-42098664 | None:intergenic | 55.0% | |
| ! | GAAGACCGATCCAAAGGCAC+AGG | - | chr4.2:42098441-42098460 | MS.gene004091:intron | 55.0% |
| ! | TGTGCCTGACTTGACTGCCT+TGG | + | chr4.2:42098479-42098498 | None:intergenic | 55.0% |
| CAGGCCCGATGGTACCAAGA+AGG | - | chr4.2:42099243-42099262 | MS.gene004091:intron | 60.0% | |
| GCTGCCAAGGCAGTCAAGTC+AGG | - | chr4.2:42098472-42098491 | MS.gene004091:intron | 60.0% | |
| !! | CTTGGTGTGGCACTGATGCG+AGG | + | chr4.2:42098589-42098608 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 42097344 | 42099330 | 42097344 | ID=MS.gene004091 |
| chr4.2 | mRNA | 42097344 | 42099330 | 42097344 | ID=MS.gene004091.t1;Parent=MS.gene004091 |
| chr4.2 | exon | 42099318 | 42099330 | 42099318 | ID=MS.gene004091.t1.exon1;Parent=MS.gene004091.t1 |
| chr4.2 | CDS | 42099318 | 42099330 | 42099318 | ID=cds.MS.gene004091.t1;Parent=MS.gene004091.t1 |
| chr4.2 | exon | 42097883 | 42098246 | 42097883 | ID=MS.gene004091.t1.exon2;Parent=MS.gene004091.t1 |
| chr4.2 | CDS | 42097883 | 42098246 | 42097883 | ID=cds.MS.gene004091.t1;Parent=MS.gene004091.t1 |
| chr4.2 | exon | 42097344 | 42097428 | 42097344 | ID=MS.gene004091.t1.exon3;Parent=MS.gene004091.t1 |
| chr4.2 | CDS | 42097344 | 42097428 | 42097344 | ID=cds.MS.gene004091.t1;Parent=MS.gene004091.t1 |
| Gene Sequence |
| Protein sequence |