Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77392.t1 | XP_003623309.1 | 98.1 | 319 | 2 | 1 | 1 | 319 | 1 | 315 | 5.70E-179 | 636.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77392.t1 | Q9C928 | 77.5 | 320 | 69 | 2 | 1 | 319 | 1 | 318 | 7.1e-146 | 518.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77392.t1 | G7KSA6 | 98.1 | 319 | 2 | 1 | 1 | 319 | 1 | 315 | 4.1e-179 | 636.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77392.t1 | MTR_7g069430 | 98.119 | 319 | 2 | 1 | 1 | 319 | 1 | 315 | 0.0 | 641 |
| MS.gene77392.t1 | MTR_1g012990 | 97.492 | 319 | 6 | 1 | 1 | 319 | 1 | 317 | 0.0 | 640 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene77392.t1 | AT3G15460 | 79.439 | 321 | 57 | 4 | 1 | 319 | 1 | 314 | 0.0 | 520 |
| MS.gene77392.t1 | AT1G52930 | 77.500 | 320 | 69 | 2 | 1 | 319 | 1 | 318 | 0.0 | 503 |
Find 66 sgRNAs with CRISPR-Local
Find 224 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTGTTGATGACCATATA+TGG | 0.264455 | 7.1:+32688494 | MS.gene77392:CDS |
| GCTCTAGGCGTATTGTTTAC+AGG | 0.279178 | 7.1:+32686399 | MS.gene77392:CDS |
| AAAATATTCGGTGGCAGTTT+TGG | 0.285272 | 7.1:+32689583 | MS.gene77392:CDS |
| GTTGAAGGAGATGCTGTTAC+AGG | 0.303915 | 7.1:+32687943 | MS.gene77392:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 7.1:+32687848 | MS.gene77392:CDS |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 7.1:+32686280 | MS.gene77392:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 7.1:-32688507 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.342543 | 7.1:+32686351 | MS.gene77392:CDS |
| TTGAATCCGATTAAAATATT+CGG | 0.352118 | 7.1:+32689571 | MS.gene77392:CDS |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 7.1:-32686362 | None:intergenic |
| AAACACAAACCTGGTAATTT+CGG | 0.365107 | 7.1:-32688519 | None:intergenic |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 7.1:+32686938 | MS.gene77392:CDS |
| CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 7.1:+32687863 | MS.gene77392:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 7.1:-32686275 | None:intergenic |
| AATTTAACAGACGGGCCGTT+GGG | 0.387269 | 7.1:-32687624 | None:intergenic |
| AGCTGAGGCCGTGCCCAAAA+AGG | 0.387341 | 7.1:+32686241 | MS.gene77392:CDS |
| CCGACATTTGATGTTGAACT+TGG | 0.401652 | 7.1:+32686911 | MS.gene77392:CDS |
| AGCTTTGCAGAAGAAGAAAA+AGG | 0.403828 | 7.1:+32689760 | MS.gene77392:CDS |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 7.1:+32686370 | MS.gene77392:CDS |
| CACATATCTGCAAACTCATC+AGG | 0.414305 | 7.1:-32689854 | None:intergenic |
| GGCTGGAACGTTTGCAAAGA+AGG | 0.416450 | 7.1:+32689781 | MS.gene77392:CDS |
| GAAATTGAGGCTAAGCATAA+TGG | 0.431524 | 7.1:+32686332 | MS.gene77392:CDS |
| GAGCTCAACAAGCTCATTCA+AGG | 0.439282 | 7.1:-32686997 | None:intergenic |
| TTAGCCTTTCTGTGGTCCTT+CGG | 0.446280 | 7.1:-32688442 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 7.1:-32686295 | None:intergenic |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 7.1:+32687589 | MS.gene77392:CDS |
| TGATAAAATGACATTGATTG+AGG | 0.479641 | 7.1:+32689448 | MS.gene77392:CDS |
| GGTTGAATCGAAAGAAACTA+AGG | 0.485204 | 7.1:+32686968 | MS.gene77392:CDS |
| TTTGATGAAAATGTCAAAAG+AGG | 0.486922 | 7.1:-32687893 | None:intergenic |
| CTCATCAGGCTCAAGAGGAT+TGG | 0.499362 | 7.1:-32689840 | None:intergenic |
| AAATTTAACAGACGGGCCGT+TGG | 0.517299 | 7.1:-32687625 | None:intergenic |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 7.1:+32688510 | MS.gene77392:CDS |
| TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 7.1:+32687849 | MS.gene77392:CDS |
| TGCATACTGGAAATTGTTGA+AGG | 0.528673 | 7.1:+32687928 | MS.gene77392:CDS |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 7.1:-32686294 | None:intergenic |
| GAAGAGAAAGCGAAGTGAAA+AGG | 0.534401 | 7.1:+32686214 | MS.gene77392:CDS |
| GTGGATTCTCATATAAAGTC+GGG | 0.536289 | 7.1:-32689609 | None:intergenic |
| GCAAACTCATCAGGCTCAAG+AGG | 0.543124 | 7.1:-32689845 | None:intergenic |
| TGATAATGAGAATGAAATTG+AGG | 0.547214 | 7.1:+32686319 | MS.gene77392:CDS |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 7.1:-32686284 | None:intergenic |
| ACTCTACGTGTCGCCAAACC+AGG | 0.562370 | 7.1:+32689630 | MS.gene77392:CDS |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 7.1:+32687593 | MS.gene77392:CDS |
| GGAAAGGCTTAGCCTTTCTG+TGG | 0.574310 | 7.1:-32688450 | None:intergenic |
| ATTTAACAGACGGGCCGTTG+GGG | 0.581078 | 7.1:-32687623 | None:intergenic |
| AGTGGATTCTCATATAAAGT+CGG | 0.583639 | 7.1:-32689610 | None:intergenic |
| TGGTTTGGCGACACGTAGAG+TGG | 0.584267 | 7.1:-32689628 | None:intergenic |
| AATCCGATTAAAATATTCGG+TGG | 0.588458 | 7.1:+32689574 | MS.gene77392:CDS |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 7.1:+32689817 | MS.gene77392:CDS |
| AACACCGAAGGACCACAGAA+AGG | 0.602217 | 7.1:+32688438 | MS.gene77392:CDS |
| CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 7.1:+32689855 | MS.gene77392:CDS |
| CTACTTGTTAGGTTGGTCCA+CGG | 0.606891 | 7.1:+32689542 | MS.gene77392:intron |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 7.1:+32689798 | MS.gene77392:CDS |
| TGGATGGCAAAATGCCCCAA+CGG | 0.618112 | 7.1:+32687609 | MS.gene77392:CDS |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 7.1:-32689410 | None:intergenic |
| GTTGAATCGAAAGAAACTAA+GGG | 0.624547 | 7.1:+32686969 | MS.gene77392:CDS |
| ATCGGATTCAAGCAAAACCG+TGG | 0.627328 | 7.1:-32689559 | None:intergenic |
| AAGTGAAAAGGCTGAAGCTG+AGG | 0.628246 | 7.1:+32686226 | MS.gene77392:CDS |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.635761 | 7.1:+32687569 | MS.gene77392:intron |
| CTTTCCAGTGCACACAATGG+AGG | 0.635931 | 7.1:+32687832 | MS.gene77392:intron |
| CTGCTTTCCAGTGCACACAA+TGG | 0.638507 | 7.1:+32687829 | MS.gene77392:intron |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 7.1:+32689801 | MS.gene77392:CDS |
| CCAAGTTCAACATCAAATGT+CGG | 0.645758 | 7.1:-32686911 | None:intergenic |
| CTCAACAAGCTCATTCAAGG+TGG | 0.661049 | 7.1:-32686994 | None:intergenic |
| CCAGATATTTGAAACACCGA+AGG | 0.677611 | 7.1:+32688426 | MS.gene77392:intron |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 7.1:+32686270 | MS.gene77392:CDS |
| GAGTCAGACAAATTACCCCG+TGG | 0.753852 | 7.1:+32689419 | MS.gene77392:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAATTAATGTCAAA+TGG | + | chr7.1:32686587-32686606 | MS.gene77392:intron | 10.0% |
| !!! | AAATATCAACATTTTTTTTA+GGG | - | chr7.1:32687227-32687246 | None:intergenic | 10.0% |
| !!! | TAAATATCAACATTTTTTTT+AGG | - | chr7.1:32687228-32687247 | None:intergenic | 10.0% |
| !!! | TAAATATTTTTTATGACATA+AGG | + | chr7.1:32687060-32687079 | MS.gene77392:intron | 10.0% |
| !!! | TTTGCTTATTTTATAATATA+TGG | + | chr7.1:32689214-32689233 | MS.gene77392:intron | 10.0% |
| !! | ATTGATCATAAACTTATTAT+AGG | + | chr7.1:32686886-32686905 | MS.gene77392:intron | 15.0% |
| !! | CATTATTTAAATTTATCTAC+TGG | - | chr7.1:32686743-32686762 | None:intergenic | 15.0% |
| !! | TAATAATTTAAACAAGATAG+AGG | + | chr7.1:32689243-32689262 | MS.gene77392:intron | 15.0% |
| !!! | CTACACTTTAAAATTTAAAA+TGG | - | chr7.1:32687359-32687378 | None:intergenic | 15.0% |
| !!! | TCATAATATCATATTTCTAT+TGG | - | chr7.1:32688896-32688915 | None:intergenic | 15.0% |
| !! | AAATACATAGAAAACCAATT+TGG | - | chr7.1:32687409-32687428 | None:intergenic | 20.0% |
| !! | AAGTCTATAAATGTTATGTT+TGG | + | chr7.1:32688186-32688205 | MS.gene77392:intron | 20.0% |
| !! | AATACATAGAAAACCAATTT+GGG | - | chr7.1:32687408-32687427 | None:intergenic | 20.0% |
| !! | AATACTATATAATCATAGCA+AGG | - | chr7.1:32687713-32687732 | None:intergenic | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | - | chr7.1:32687636-32687655 | None:intergenic | 20.0% |
| !! | CTATGATTATATAGTATTCT+AGG | + | chr7.1:32687715-32687734 | MS.gene77392:intron | 20.0% |
| !! | TAAAAGAGAAACTAGTAAAA+TGG | - | chr7.1:32687803-32687822 | None:intergenic | 20.0% |
| !! | TAACTAAAAATTTAACAGAC+GGG | - | chr7.1:32687635-32687654 | None:intergenic | 20.0% |
| !! | TACTGAAAATAACTACATAT+TGG | + | chr7.1:32689701-32689720 | MS.gene77392:intron | 20.0% |
| !! | TTGAATCCGATTAAAATATT+CGG | + | chr7.1:32689571-32689590 | MS.gene77392:CDS | 20.0% |
| !! | TTGAGTTATGTATTTGAAAA+GGG | + | chr7.1:32688299-32688318 | MS.gene77392:intron | 20.0% |
| !! | TTGCAAAAGATCTAAATAAT+TGG | + | chr7.1:32688546-32688565 | MS.gene77392:intron | 20.0% |
| !!! | AATTTTAATTGTGTAGAATG+CGG | + | chr7.1:32688226-32688245 | MS.gene77392:intron | 20.0% |
| !!! | AGTAAATGATTGTTTTACTA+TGG | + | chr7.1:32688975-32688994 | MS.gene77392:intron | 20.0% |
| !!! | CAGTTTACTTATTTTAAATC+TGG | + | chr7.1:32687432-32687451 | MS.gene77392:intron | 20.0% |
| !!! | GCTTATTTTATAATATATGG+AGG | + | chr7.1:32689217-32689236 | MS.gene77392:intron | 20.0% |
| !!! | GTTTAAACTTTAAAATCTGT+TGG | + | chr7.1:32688603-32688622 | MS.gene77392:intron | 20.0% |
| !!! | TATAATTATGCCAATTGTTT+TGG | + | chr7.1:32688680-32688699 | MS.gene77392:intron | 20.0% |
| !!! | TTGTTTATTTTGGTTATGTT+TGG | + | chr7.1:32686489-32686508 | MS.gene77392:intron | 20.0% |
| ! | ACAAACAGATAGAATATTAC+CGG | - | chr7.1:32687661-32687680 | None:intergenic | 25.0% |
| ! | ACATCAGTTAAATGAATCTT+AGG | - | chr7.1:32689515-32689534 | None:intergenic | 25.0% |
| ! | CATCAACATATGTAACAAAA+TGG | - | chr7.1:32687184-32687203 | None:intergenic | 25.0% |
| ! | CTAATGCAATATGTTATTGT+TGG | + | chr7.1:32687251-32687270 | MS.gene77392:intron | 25.0% |
| ! | CTTGAGTTATGTATTTGAAA+AGG | + | chr7.1:32688298-32688317 | MS.gene77392:intron | 25.0% |
| ! | GAAAATTGACTGTTTGTTTA+TGG | + | chr7.1:32687144-32687163 | MS.gene77392:intron | 25.0% |
| ! | GGATACAGCAAAATATATTT+GGG | - | chr7.1:32686439-32686458 | None:intergenic | 25.0% |
| ! | GTTAAGTTATTATGCTGTAA+GGG | + | chr7.1:32686523-32686542 | MS.gene77392:intron | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | - | chr7.1:32687706-32687725 | None:intergenic | 25.0% |
| ! | TATGACAATAGATCACAAAT+AGG | - | chr7.1:32688120-32688139 | None:intergenic | 25.0% |
| ! | TGAGTTATGTATTTGAAAAG+GGG | + | chr7.1:32688300-32688319 | MS.gene77392:intron | 25.0% |
| ! | TGTTAAGTTATTATGCTGTA+AGG | + | chr7.1:32686522-32686541 | MS.gene77392:intron | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | - | chr7.1:32687896-32687915 | None:intergenic | 25.0% |
| !! | AGTGTACATTGAGAATATTT+TGG | - | chr7.1:32689662-32689681 | None:intergenic | 25.0% |
| !! | ATACTTCTTCCTTTTATTGT+GGG | + | chr7.1:32686842-32686861 | MS.gene77392:intron | 25.0% |
| !! | TATACTTCTTCCTTTTATTG+TGG | + | chr7.1:32686841-32686860 | MS.gene77392:intron | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | + | chr7.1:32689448-32689467 | MS.gene77392:CDS | 25.0% |
| !! | TGATAATGAGAATGAAATTG+AGG | + | chr7.1:32686319-32686338 | MS.gene77392:CDS | 25.0% |
| !! | TGATATGGTATATAAGGTTT+TGG | - | chr7.1:32688948-32688967 | None:intergenic | 25.0% |
| !! | TGATGACTTTTATACTAATC+CGG | + | chr7.1:32689181-32689200 | MS.gene77392:intron | 25.0% |
| !! | TTCACAATTTTCTGTAGTTT+TGG | + | chr7.1:32688267-32688286 | MS.gene77392:intron | 25.0% |
| !!! | AGTTTTGGATTCAAAAGTTA+AGG | + | chr7.1:32687994-32688013 | MS.gene77392:intron | 25.0% |
| !!! | ATAGAGGTATTATTTTATGC+TGG | + | chr7.1:32689259-32689278 | MS.gene77392:intron | 25.0% |
| !!! | ATTGTTTTACTATGGTTACA+TGG | + | chr7.1:32688983-32689002 | MS.gene77392:intron | 25.0% |
| !!! | ATTTTAATTGTGTAGAATGC+GGG | + | chr7.1:32688227-32688246 | MS.gene77392:intron | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | + | chr7.1:32687915-32687934 | MS.gene77392:CDS | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | - | chr7.1:32689448-32689467 | None:intergenic | 25.0% |
| !!! | GAGTTTGGATTTGTTTATTT+TGG | + | chr7.1:32686479-32686498 | MS.gene77392:intron | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | + | chr7.1:32687639-32687658 | MS.gene77392:CDS | 25.0% |
| !!! | TCTATCTGTTTGTTATCTTA+AGG | + | chr7.1:32687668-32687687 | MS.gene77392:intron | 25.0% |
| !!! | TTCGTCATGTTTATTTTTTG+AGG | + | chr7.1:32687028-32687047 | MS.gene77392:CDS | 25.0% |
| AAAAGATCTTTATCTCTGGA+TGG | + | chr7.1:32687593-32687612 | MS.gene77392:CDS | 30.0% | |
| AAACACAAACCTGGTAATTT+CGG | - | chr7.1:32688522-32688541 | None:intergenic | 30.0% | |
| AACTACAGAAAATTGTGAAC+AGG | - | chr7.1:32688266-32688285 | None:intergenic | 30.0% | |
| AACTCAAACTCGAGATTAAA+TGG | - | chr7.1:32687476-32687495 | None:intergenic | 30.0% | |
| AAGATGCTGAAAACAGTTTA+TGG | + | chr7.1:32686662-32686681 | MS.gene77392:intron | 30.0% | |
| AATCCGATTAAAATATTCGG+TGG | + | chr7.1:32689574-32689593 | MS.gene77392:CDS | 30.0% | |
| ATAAGCAAAATTAAGTCCAC+CGG | - | chr7.1:32689203-32689222 | None:intergenic | 30.0% | |
| ATACTAAAGCCTGTTTGTAA+AGG | - | chr7.1:32688833-32688852 | None:intergenic | 30.0% | |
| CAAAAAGAAGAATGAAGAAC+TGG | - | chr7.1:32687750-32687769 | None:intergenic | 30.0% | |
| CGGATACAGCAAAATATATT+TGG | - | chr7.1:32686440-32686459 | None:intergenic | 30.0% | |
| CTGAAATTCACATACAAAGA+AGG | - | chr7.1:32687562-32687581 | None:intergenic | 30.0% | |
| GGATCTACAACAACATAAAA+AGG | - | chr7.1:32689739-32689758 | None:intergenic | 30.0% | |
| GTTGAATCGAAAGAAACTAA+GGG | + | chr7.1:32686969-32686988 | MS.gene77392:CDS | 30.0% | |
| GTTGTATCCATAAACTATCT+TGG | + | chr7.1:32686628-32686647 | MS.gene77392:intron | 30.0% | |
| TACTAAAAACAAATAAGCGC+TGG | + | chr7.1:32688648-32688667 | MS.gene77392:intron | 30.0% | |
| TCACTCTAAGTCAAAAACTA+TGG | - | chr7.1:32688710-32688729 | None:intergenic | 30.0% | |
| TCATTGCAAAAAGGATAACA+AGG | + | chr7.1:32686947-32686966 | MS.gene77392:CDS | 30.0% | |
| TCGATAATACCATCTTAGTT+TGG | + | chr7.1:32688022-32688041 | MS.gene77392:intron | 30.0% | |
| TCTAGTCTATTTGTGACATT+TGG | + | chr7.1:32687518-32687537 | MS.gene77392:intron | 30.0% | |
| TTATAGACTTCTCAAGTCAA+CGG | - | chr7.1:32688176-32688195 | None:intergenic | 30.0% | |
| TTGTGTAATCCATCACAAAA+AGG | - | chr7.1:32687304-32687323 | None:intergenic | 30.0% | |
| ! | AATCTGTTTCCTTTTTGTGA+TGG | + | chr7.1:32687292-32687311 | MS.gene77392:intron | 30.0% |
| ! | AGAAAATGGATTCTTCACAT+AGG | + | chr7.1:32689088-32689107 | MS.gene77392:intron | 30.0% |
| ! | AGTGGATTCTCATATAAAGT+CGG | - | chr7.1:32689613-32689632 | None:intergenic | 30.0% |
| ! | ATAATACCATCTTAGTTTGG+TGG | + | chr7.1:32688025-32688044 | MS.gene77392:intron | 30.0% |
| ! | TTGTTATCCTTTTTGCAATG+AGG | - | chr7.1:32686948-32686967 | None:intergenic | 30.0% |
| !!! | ACTGATTTTTTGTAAACCAC+TGG | + | chr7.1:32689016-32689035 | MS.gene77392:intron | 30.0% |
| !!! | AGAATATTTTGGTTGTTACC+TGG | - | chr7.1:32689651-32689670 | None:intergenic | 30.0% |
| AAACACTTGTGAGACTGTTA+GGG | - | chr7.1:32686717-32686736 | None:intergenic | 35.0% | |
| AAATCACCACCAAACTAAGA+TGG | - | chr7.1:32688034-32688053 | None:intergenic | 35.0% | |
| AACCAATCACCCACAATAAA+AGG | - | chr7.1:32686854-32686873 | None:intergenic | 35.0% | |
| AATTTGTCTGACTCATTGTG+AGG | - | chr7.1:32689413-32689432 | None:intergenic | 35.0% | |
| ACATAGAAAACCAATTTGGG+AGG | - | chr7.1:32687405-32687424 | None:intergenic | 35.0% | |
| ACTTGCTCGAGATTAATAAC+CGG | - | chr7.1:32687499-32687518 | None:intergenic | 35.0% | |
| AGAAAACAAAAACGTGGTCA+TGG | - | chr7.1:32688474-32688493 | None:intergenic | 35.0% | |
| AGAAACTAGTAAAATGGCCT+CGG | - | chr7.1:32687797-32687816 | None:intergenic | 35.0% | |
| AGCAATGTTAGCAAAGAAAG+AGG | - | chr7.1:32688757-32688776 | None:intergenic | 35.0% | |
| AGCTTTGCAGAAGAAGAAAA+AGG | + | chr7.1:32689760-32689779 | MS.gene77392:CDS | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | + | chr7.1:32687589-32687608 | MS.gene77392:CDS | 35.0% | |
| ATAGAAAACCAATTTGGGAG+GGG | - | chr7.1:32687403-32687422 | None:intergenic | 35.0% | |
| ATGTGTGCAAACTACTTGTT+AGG | + | chr7.1:32689531-32689550 | MS.gene77392:intron | 35.0% | |
| ATTGATTGAGGTCTGCAAAT+TGG | + | chr7.1:32689460-32689479 | MS.gene77392:intron | 35.0% | |
| ATTGTCTACACTTCTAGTCT+AGG | + | chr7.1:32689060-32689079 | MS.gene77392:intron | 35.0% | |
| CAACAACTTTCGATCATACT+AGG | - | chr7.1:32688080-32688099 | None:intergenic | 35.0% | |
| CAATCGAGAAAACAAAAACG+TGG | - | chr7.1:32688480-32688499 | None:intergenic | 35.0% | |
| CATAGAAAACCAATTTGGGA+GGG | - | chr7.1:32687404-32687423 | None:intergenic | 35.0% | |
| CATTTACTTCTTCGCTGATA+TGG | - | chr7.1:32688963-32688982 | None:intergenic | 35.0% | |
| CCAAGTTCAACATCAAATGT+CGG | - | chr7.1:32686914-32686933 | None:intergenic | 35.0% | |
| CTATGGCTAACCAAAACAAT+TGG | - | chr7.1:32688693-32688712 | None:intergenic | 35.0% | |
| CTTCGCTGATATGGTATATA+AGG | - | chr7.1:32688954-32688973 | None:intergenic | 35.0% | |
| GAAATTGAGGCTAAGCATAA+TGG | + | chr7.1:32686332-32686351 | MS.gene77392:CDS | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | - | chr7.1:32688510-32688529 | None:intergenic | 35.0% | |
| GGTTGAATCGAAAGAAACTA+AGG | + | chr7.1:32686968-32686987 | MS.gene77392:CDS | 35.0% | |
| GTGGATTCTCATATAAAGTC+GGG | - | chr7.1:32689612-32689631 | None:intergenic | 35.0% | |
| TAAACACTTGTGAGACTGTT+AGG | - | chr7.1:32686718-32686737 | None:intergenic | 35.0% | |
| TACATGATAATAGCATCCAG+TGG | - | chr7.1:32689035-32689054 | None:intergenic | 35.0% | |
| TAGTCTAGGGGAAAAGAAAA+TGG | + | chr7.1:32689074-32689093 | MS.gene77392:intron | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | + | chr7.1:32688510-32688529 | MS.gene77392:CDS | 35.0% | |
| TATGTATTTGAAAAGGGGTG+TGG | + | chr7.1:32688305-32688324 | MS.gene77392:intron | 35.0% | |
| TGCATACTGGAAATTGTTGA+AGG | + | chr7.1:32687928-32687947 | MS.gene77392:CDS | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | - | chr7.1:32686365-32686384 | None:intergenic | 35.0% | |
| TTCTTTGCTAACATTGCTGA+TGG | + | chr7.1:32688759-32688778 | MS.gene77392:intron | 35.0% | |
| TTGTATGTGAATTTCAGTGC+AGG | + | chr7.1:32687565-32687584 | MS.gene77392:intron | 35.0% | |
| TTGTCTACACTTCTAGTCTA+GGG | + | chr7.1:32689061-32689080 | MS.gene77392:intron | 35.0% | |
| ! | AACATTGCTGATGGATAAAC+TGG | + | chr7.1:32688768-32688787 | MS.gene77392:intron | 35.0% |
| ! | ACATTGCTGATGGATAAACT+GGG | + | chr7.1:32688769-32688788 | MS.gene77392:intron | 35.0% |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | + | chr7.1:32686370-32686389 | MS.gene77392:CDS | 35.0% |
| ! | TACTCTTCTATGCACAGTTT+TGG | + | chr7.1:32687979-32687998 | MS.gene77392:intron | 35.0% |
| ! | TCATTTTATCAAGGCTTCCA+CGG | - | chr7.1:32689439-32689458 | None:intergenic | 35.0% |
| ! | TGACTTTTATACTAATCCGG+TGG | + | chr7.1:32689184-32689203 | MS.gene77392:intron | 35.0% |
| ! | TTAATCTCGAGTTTGAGTTC+CGG | + | chr7.1:32687477-32687496 | MS.gene77392:intron | 35.0% |
| ! | TTCCTTTTATTGTGGGTGAT+TGG | + | chr7.1:32686849-32686868 | MS.gene77392:intron | 35.0% |
| ! | TTTTCTTCTTCTGCAAAGCT+CGG | - | chr7.1:32689760-32689779 | None:intergenic | 35.0% |
| !! | AAAATATTCGGTGGCAGTTT+TGG | + | chr7.1:32689583-32689602 | MS.gene77392:CDS | 35.0% |
| !! | ATCTTAGTTTGGTGGTGATT+TGG | + | chr7.1:32688033-32688052 | MS.gene77392:intron | 35.0% |
| !! | CAAATTGAAGCATTAGCCTT+AGG | + | chr7.1:32688805-32688824 | MS.gene77392:intron | 35.0% |
| !! | CGATTGTTGATGACCATATA+TGG | + | chr7.1:32688494-32688513 | MS.gene77392:CDS | 35.0% |
| !! | TCTTAGTTTGGTGGTGATTT+GGG | + | chr7.1:32688034-32688053 | MS.gene77392:intron | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | + | chr7.1:32686384-32686403 | MS.gene77392:CDS | 35.0% |
| !!! | ACTTGCATTTTTTGCAGATG+TGG | + | chr7.1:32689285-32689304 | MS.gene77392:intron | 35.0% |
| !!! | ATTTTGGTTGTTACCTGGTT+TGG | - | chr7.1:32689646-32689665 | None:intergenic | 35.0% |
| !!! | CTGCCACCGAATATTTTAAT+CGG | - | chr7.1:32689580-32689599 | None:intergenic | 35.0% |
| !!! | GGGTGATTGGTTTTTGAATA+TGG | + | chr7.1:32686862-32686881 | MS.gene77392:intron | 35.0% |
| !!! | GTTTGTGCTTGTTTTGAGTT+TGG | + | chr7.1:32686464-32686483 | MS.gene77392:intron | 35.0% |
| AAACTATCTTGGAGAGCTCA+TGG | + | chr7.1:32686639-32686658 | MS.gene77392:intron | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | + | chr7.1:32689817-32689836 | MS.gene77392:CDS | 40.0% | |
| ACAAAAACGTGGTCATGGAA+AGG | - | chr7.1:32688469-32688488 | None:intergenic | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | + | chr7.1:32689798-32689817 | MS.gene77392:CDS | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | + | chr7.1:32687848-32687867 | MS.gene77392:CDS | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | + | chr7.1:32687569-32687588 | MS.gene77392:intron | 40.0% | |
| CAAAACAAGCACAAACTGTG+CGG | - | chr7.1:32686460-32686479 | None:intergenic | 40.0% | |
| CACATATCTGCAAACTCATC+AGG | - | chr7.1:32689857-32689876 | None:intergenic | 40.0% | |
| CCGACATTTGATGTTGAACT+TGG | + | chr7.1:32686911-32686930 | MS.gene77392:CDS | 40.0% | |
| CCTGTTTGTAAAGGAACCTA+AGG | - | chr7.1:32688824-32688843 | None:intergenic | 40.0% | |
| CCTTAGGTTCCTTTACAAAC+AGG | + | chr7.1:32688821-32688840 | MS.gene77392:intron | 40.0% | |
| CTGATGAGTTTGCAGATATG+TGG | + | chr7.1:32689855-32689874 | MS.gene77392:CDS | 40.0% | |
| CTTACTGGGAATCACCTAAA+AGG | + | chr7.1:32687863-32687882 | MS.gene77392:CDS | 40.0% | |
| CTTATCCTTCCATCCCAAAA+GGG | - | chr7.1:32686297-32686316 | None:intergenic | 40.0% | |
| GAAGAGAAAGCGAAGTGAAA+AGG | + | chr7.1:32686214-32686233 | MS.gene77392:CDS | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | + | chr7.1:32687950-32687969 | MS.gene77392:intron | 40.0% | |
| GAGCTATGCTATGTTGTTGT+TGG | + | chr7.1:32687114-32687133 | MS.gene77392:intron | 40.0% | |
| GAGCTCTCCAAGATAGTTTA+TGG | - | chr7.1:32686638-32686657 | None:intergenic | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | - | chr7.1:32686298-32686317 | None:intergenic | 40.0% | |
| TGCAAATGCAAACACAAACC+TGG | - | chr7.1:32688531-32688550 | None:intergenic | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | + | chr7.1:32687849-32687868 | MS.gene77392:CDS | 40.0% | |
| TGTCTACACTTCTAGTCTAG+GGG | + | chr7.1:32689062-32689081 | MS.gene77392:intron | 40.0% | |
| TTGCAGAAGAAGAAAAAGGC+TGG | + | chr7.1:32689764-32689783 | MS.gene77392:CDS | 40.0% | |
| ! | ATTTTATCAAGGCTTCCACG+GGG | - | chr7.1:32689437-32689456 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCAC+GGG | - | chr7.1:32689438-32689457 | None:intergenic | 40.0% |
| ! | CCAGATATTTGAAACACCGA+AGG | + | chr7.1:32688426-32688445 | MS.gene77392:intron | 40.0% |
| ! | GTGCAAACTACTTGTTAGGT+TGG | + | chr7.1:32689535-32689554 | MS.gene77392:intron | 40.0% |
| !! | CCTTCGGTGTTTCAAATATC+TGG | - | chr7.1:32688429-32688448 | None:intergenic | 40.0% |
| !! | CTTAGTTTGGTGGTGATTTG+GGG | + | chr7.1:32688035-32688054 | MS.gene77392:intron | 40.0% |
| !! | TTAGTTTGGTGGTGATTTGG+GGG | + | chr7.1:32688036-32688055 | MS.gene77392:intron | 40.0% |
| AAATTTAACAGACGGGCCGT+TGG | - | chr7.1:32687628-32687647 | None:intergenic | 45.0% | |
| AAGTGAAAAGGCTGAAGCTG+AGG | + | chr7.1:32686226-32686245 | MS.gene77392:CDS | 45.0% | |
| AATTCCTCCATTGTGTGCAC+TGG | - | chr7.1:32687839-32687858 | None:intergenic | 45.0% | |
| AATTTAACAGACGGGCCGTT+GGG | - | chr7.1:32687627-32687646 | None:intergenic | 45.0% | |
| ACGCTACCACATGTGATTGA+CGG | + | chr7.1:32689132-32689151 | MS.gene77392:intron | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | + | chr7.1:32689801-32689820 | MS.gene77392:CDS | 45.0% | |
| ATCGGATTCAAGCAAAACCG+TGG | - | chr7.1:32689562-32689581 | None:intergenic | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | + | chr7.1:32686351-32686370 | MS.gene77392:CDS | 45.0% | |
| CAATTTGGGAGGGGAAACAA+AGG | - | chr7.1:32687394-32687413 | None:intergenic | 45.0% | |
| CTCAACAAGCTCATTCAAGG+TGG | - | chr7.1:32686997-32687016 | None:intergenic | 45.0% | |
| GAGCTCAACAAGCTCATTCA+AGG | - | chr7.1:32687000-32687019 | None:intergenic | 45.0% | |
| GCTTCTGCCTCATTGCAAAA+AGG | + | chr7.1:32686938-32686957 | MS.gene77392:CDS | 45.0% | |
| GTAGATCCGTCAATCACATG+TGG | - | chr7.1:32689141-32689160 | None:intergenic | 45.0% | |
| GTTGAAGGAGATGCTGTTAC+AGG | + | chr7.1:32687943-32687962 | MS.gene77392:CDS | 45.0% | |
| ! | AAAGAGGACGAGAGCCTTTT+AGG | - | chr7.1:32687880-32687899 | None:intergenic | 45.0% |
| ! | AATCACATGTGGTAGCGTCA+TGG | - | chr7.1:32689130-32689149 | None:intergenic | 45.0% |
| ! | CTGCACACAAAGAGCTTGTT+TGG | - | chr7.1:32686770-32686789 | None:intergenic | 45.0% |
| ! | CTTTGTTTCCCCTCCCAAAT+TGG | + | chr7.1:32687392-32687411 | MS.gene77392:intron | 45.0% |
| ! | GCTCTAGGCGTATTGTTTAC+AGG | + | chr7.1:32686399-32686418 | MS.gene77392:CDS | 45.0% |
| ! | GGAGCAACATCCTCCTTTTT+GGG | - | chr7.1:32686257-32686276 | None:intergenic | 45.0% |
| ! | TGGAGCAACATCCTCCTTTT+TGG | - | chr7.1:32686258-32686277 | None:intergenic | 45.0% |
| ! | TTAGCCTTTCTGTGGTCCTT+CGG | - | chr7.1:32688445-32688464 | None:intergenic | 45.0% |
| !! | AACATCCTCCTTTTTGGGCA+CGG | - | chr7.1:32686252-32686271 | None:intergenic | 45.0% |
| !! | ACAAATAAGCGCTGGCATCT+TGG | + | chr7.1:32688656-32688675 | MS.gene77392:intron | 45.0% |
| !! | ATATTCGGTGGCAGTTTTGG+AGG | + | chr7.1:32689586-32689605 | MS.gene77392:CDS | 45.0% |
| !! | CTACTTGTTAGGTTGGTCCA+CGG | + | chr7.1:32689542-32689561 | MS.gene77392:intron | 45.0% |
| AACACCGAAGGACCACAGAA+AGG | + | chr7.1:32688438-32688457 | MS.gene77392:CDS | 50.0% | |
| ATTTAACAGACGGGCCGTTG+GGG | - | chr7.1:32687626-32687645 | None:intergenic | 50.0% | |
| CTCATCAGGCTCAAGAGGAT+TGG | - | chr7.1:32689843-32689862 | None:intergenic | 50.0% | |
| CTGCTTTCCAGTGCACACAA+TGG | + | chr7.1:32687829-32687848 | MS.gene77392:intron | 50.0% | |
| CTTTCCAGTGCACACAATGG+AGG | + | chr7.1:32687832-32687851 | MS.gene77392:intron | 50.0% | |
| GAGTCAGACAAATTACCCCG+TGG | + | chr7.1:32689419-32689438 | MS.gene77392:CDS | 50.0% | |
| GCAAACTCATCAGGCTCAAG+AGG | - | chr7.1:32689848-32689867 | None:intergenic | 50.0% | |
| GGCTGGAACGTTTGCAAAGA+AGG | + | chr7.1:32689781-32689800 | MS.gene77392:CDS | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | + | chr7.1:32687609-32687628 | MS.gene77392:CDS | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | + | chr7.1:32686281-32686300 | MS.gene77392:CDS | 50.0% |
| ! | GGAAAGGCTTAGCCTTTCTG+TGG | - | chr7.1:32688453-32688472 | None:intergenic | 50.0% |
| !!! | GCGCGCGTGCATTTTTTTCT+TGG | + | chr7.1:32688339-32688358 | MS.gene77392:intron | 50.0% |
| ACCGTCTCTCTTTCTCTCCG+AGG | + | chr7.1:32687777-32687796 | MS.gene77392:intron | 55.0% | |
| ACTCTACGTGTCGCCAAACC+AGG | + | chr7.1:32689630-32689649 | MS.gene77392:CDS | 55.0% | |
| CATCCCAAAAGGGTCCTCAC+TGG | - | chr7.1:32686287-32686306 | None:intergenic | 55.0% | |
| GCCTCGGAGAGAAAGAGAGA+CGG | - | chr7.1:32687781-32687800 | None:intergenic | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | + | chr7.1:32686270-32686289 | MS.gene77392:CDS | 55.0% | |
| ! | GAGACCAGTGAGGACCCTTT+TGG | + | chr7.1:32686280-32686299 | MS.gene77392:CDS | 55.0% |
| ! | TGGTTTGGCGACACGTAGAG+TGG | - | chr7.1:32689631-32689650 | None:intergenic | 55.0% |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | + | chr7.1:32686285-32686304 | MS.gene77392:CDS | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | + | chr7.1:32686289-32686308 | MS.gene77392:CDS | 55.0% |
| AGCTGAGGCCGTGCCCAAAA+AGG | + | chr7.1:32686241-32686260 | MS.gene77392:CDS | 60.0% | |
| TGAGGCCGTGCCCAAAAAGG+AGG | + | chr7.1:32686244-32686263 | MS.gene77392:CDS | 60.0% | |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | - | chr7.1:32686278-32686297 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32686209 | 32689886 | 32686209 | ID=MS.gene77392 |
| chr7.1 | mRNA | 32686209 | 32689886 | 32686209 | ID=MS.gene77392.t1;Parent=MS.gene77392 |
| chr7.1 | exon | 32686209 | 32686420 | 32686209 | ID=MS.gene77392.t1.exon1;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32686209 | 32686420 | 32686209 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| chr7.1 | exon | 32686908 | 32687049 | 32686908 | ID=MS.gene77392.t1.exon2;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32686908 | 32687049 | 32686908 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| chr7.1 | exon | 32687582 | 32687660 | 32687582 | ID=MS.gene77392.t1.exon3;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32687582 | 32687660 | 32687582 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| chr7.1 | exon | 32687840 | 32687964 | 32687840 | ID=MS.gene77392.t1.exon4;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32687840 | 32687964 | 32687840 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| chr7.1 | exon | 32688430 | 32688531 | 32688430 | ID=MS.gene77392.t1.exon5;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32688430 | 32688531 | 32688430 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| chr7.1 | exon | 32689401 | 32689469 | 32689401 | ID=MS.gene77392.t1.exon6;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32689401 | 32689469 | 32689401 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| chr7.1 | exon | 32689553 | 32689651 | 32689553 | ID=MS.gene77392.t1.exon7;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32689553 | 32689651 | 32689553 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| chr7.1 | exon | 32689755 | 32689886 | 32689755 | ID=MS.gene77392.t1.exon8;Parent=MS.gene77392.t1 |
| chr7.1 | CDS | 32689755 | 32689886 | 32689755 | ID=cds.MS.gene77392.t1;Parent=MS.gene77392.t1 |
| Gene Sequence |
| Protein sequence |
