AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99779


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99779.t1 MTR_1g012990 98.119 319 4 1 1 319 1 317 0.0 646
MS.gene99779.t1 MTR_7g069430 97.179 319 5 1 1 319 1 315 0.0 638
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99779.t1 AT3G15460 79.062 320 60 3 1 319 1 314 0.0 523
MS.gene99779.t1 AT1G52930 78.125 320 67 2 1 319 1 318 0.0 504

Find 69 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTAGGCGTATTGTTTAT+AGG 0.224171 2.3:-17637419 MS.gene99779:intron
CAATTGTTGATGACCATATA+TGG 0.275985 2.3:-17635392 MS.gene99779:CDS
AAAATATTCGGTGGCAGTTT+TGG 0.276214 2.3:-17634329 MS.gene99779:CDS
CGCTTTGCAGAAGAAGAAAA+AGG 0.301141 2.3:-17634148 MS.gene99779:CDS
ATGGAGGAATTGAAGCTTAC+TGG 0.304877 2.3:-17636029 MS.gene99779:CDS
TGGTTTGGCGACACATATAA+TGG 0.307289 2.3:+17634284 None:intergenic
GAGACCAGTGAGGACCCTTT+TGG 0.316595 2.3:-17637538 MS.gene99779:CDS
GGTAATTTCGGAACCATATA+TGG 0.326418 2.3:+17635379 None:intergenic
TGCATACTGGAAACTGTTAA+AGG 0.335855 2.3:-17635949 MS.gene99779:CDS
AGACACAAACCTGGTAATTT+CGG 0.336053 2.3:+17635367 None:intergenic
TTGAATCCAATTAAAATATT+CGG 0.338246 2.3:-17634341 MS.gene99779:CDS
TGAGAATGAAGTCGAGGTTA+AGG 0.351881 2.3:-17637493 MS.gene99779:CDS
TTCTCTTTGTTCCTGAATAC+AGG 0.355373 2.3:+17637456 None:intergenic
ATGGTGCTTCACCTGTATTC+AGG 0.357859 2.3:-17637467 MS.gene99779:CDS
GCTTCTGCCTCATTGCAAAA+AGG 0.366733 2.3:-17636882 MS.gene99779:CDS
CTTACTGGGAATCACCTAAA+AGG 0.369692 2.3:-17636014 MS.gene99779:CDS
AGGGTCCTCACTGGTCTCTC+TGG 0.383639 2.3:+17637543 None:intergenic
GGAAAGGCTTAGCCTTTCTA+TGG 0.386528 2.3:+17635436 None:intergenic
GTTAAAGGAGATGCTGTTGC+AGG 0.390320 2.3:-17635934 MS.gene99779:intron
ATAATGGTCATTACCTGGTT+TGG 0.399636 2.3:+17634269 None:intergenic
CAGGAACAAAGAGAAAGTTT+TGG 0.404050 2.3:-17637448 MS.gene99779:CDS
AATTTAACAGACGGACCGTT+GGG 0.405139 2.3:+17636258 None:intergenic
AGCTGTGGCTGTGCCCAAAA+AGG 0.410300 2.3:-17637577 MS.gene99779:CDS
CACATATCTGCAAACTCATC+AGG 0.414305 2.3:+17634054 None:intergenic
TTAGCCTTTCTATGGTCCTT+CGG 0.432964 2.3:+17635444 None:intergenic
GAGCTCAACAAGCTCGTTCA+AGG 0.438472 2.3:+17636823 None:intergenic
GGCTGGAACATTTGCAAAGA+AGG 0.442018 2.3:-17634127 MS.gene99779:CDS
AATGGATTCTCATATAAAGT+TGG 0.442109 2.3:+17634302 None:intergenic
TCTTATCCTTCCATCCCAAA+AGG 0.448553 2.3:+17637523 None:intergenic
GCATGAGATGGCCAATCCTC+TGG 0.463080 2.3:-17634079 MS.gene99779:CDS
ATGGATTCTCATATAAAGTT+GGG 0.466075 2.3:+17634303 None:intergenic
AGGCAAAAGATCTTTATCTC+TGG 0.470351 2.3:-17636293 MS.gene99779:CDS
TGATAAAATGACATTGATTG+AGG 0.479641 2.3:-17634465 MS.gene99779:intron
CTCATCAGGCTCCAGAGGAT+TGG 0.500537 2.3:+17634068 None:intergenic
CCGACATTTGATGTTGAACC+TGG 0.503744 2.3:-17636909 MS.gene99779:CDS
TTTGATGAAAATGTCAAAAG+AGG 0.513130 2.3:+17635984 None:intergenic
TATATGGTTCCGAAATTACC+AGG 0.519157 2.3:-17635376 MS.gene99779:intron
TGGAGGAATTGAAGCTTACT+GGG 0.524362 2.3:-17636028 MS.gene99779:CDS
CTTATCCTTCCATCCCAAAA+GGG 0.530204 2.3:+17637524 None:intergenic
ATTATATGTGTCGCCAAACC+AGG 0.539453 2.3:-17634282 MS.gene99779:intron
AAATTTAACAGACGGACCGT+TGG 0.547683 2.3:+17636257 None:intergenic
AATGAGGCAGAAGCGATACC+AGG 0.551260 2.3:+17636891 None:intergenic
CATCCCAAAAGGGTCCTCAC+TGG 0.551306 2.3:+17637534 None:intergenic
GAAGTCGAGGTTAAGGAGAA+TGG 0.558717 2.3:-17637486 MS.gene99779:CDS
GAAGAGAAAACGAAGCGAAA+AGG 0.560289 2.3:-17637604 MS.gene99779:CDS
AAAAGATCTTTATCTCTGGA+TGG 0.569362 2.3:-17636289 MS.gene99779:CDS
TTGATGAAAATGTCAAAAGA+GGG 0.581244 2.3:+17635985 None:intergenic
AATCCAATTAAAATATTCGG+TGG 0.581638 2.3:-17634338 MS.gene99779:CDS
GCAAACTCATCAGGCTCCAG+AGG 0.583650 2.3:+17634063 None:intergenic
AAGGAGGAAAATGCATGAGA+TGG 0.589573 2.3:-17634091 MS.gene99779:CDS
GTTGAATCGAAAGAAACTAA+AGG 0.591875 2.3:-17636851 MS.gene99779:CDS
AACTCCGAAGGACCATAGAA+AGG 0.592135 2.3:-17635448 MS.gene99779:CDS
TGAAAATGTCAAAAGAGGGC+GGG 0.598198 2.3:+17635989 None:intergenic
TACTTGTTTAGGTTGGTCCA+CGG 0.602021 2.3:-17634370 MS.gene99779:intron
CTGATGAGTTTGCAGATATG+TGG 0.604261 2.3:-17634053 MS.gene99779:CDS
AAGCGAAAAGGCTGAAGCTG+TGG 0.609947 2.3:-17637592 MS.gene99779:CDS
AGAAGGTCAAAGCAAAGACA+AGG 0.616949 2.3:-17634110 MS.gene99779:CDS
AATTTGTCTGACTCATTGTG+AGG 0.622655 2.3:+17634503 None:intergenic
TGAAAATGAGAATGAAGTCG+AGG 0.626692 2.3:-17637499 MS.gene99779:CDS
ATTGGATTCAAGCAGAACCG+TGG 0.628585 2.3:+17634353 None:intergenic
ATGAAAATGTCAAAAGAGGG+CGG 0.629935 2.3:+17635988 None:intergenic
AGGTCAAAGCAAAGACAAGG+AGG 0.640567 2.3:-17634107 MS.gene99779:CDS
TGGATGGCAAAATGCCCCAA+CGG 0.651109 2.3:-17636273 MS.gene99779:CDS
ATGTGAATTTCAGTGCAGGA+AGG 0.660599 2.3:-17636313 MS.gene99779:intron
CCAGGTTCAACATCAAATGT+CGG 0.661077 2.3:+17636909 None:intergenic
ATTTAACAGACGGACCGTTG+GGG 0.668767 2.3:+17636259 None:intergenic
CTCAACAAGCTCGTTCAAGG+TGG 0.686995 2.3:+17636826 None:intergenic
TTGCTCCAGAGAGACCAGTG+AGG 0.749614 2.3:-17637548 MS.gene99779:CDS
GAGTCAGACAAATTACCCCG+AGG 0.769107 2.3:-17634494 MS.gene99779:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATTAATGTCAAA+TGG - chr2.3:17634422-17634441 MS.gene99779:intron 10.0%
!! AAATACAGCAAAATATATTT+GGG + chr2.3:17634274-17634293 None:intergenic 15.0%
!! AATAATATATAATCATAGCA+AGG + chr2.3:17635485-17635504 None:intergenic 15.0%
!! ATTGATCATAAACTTATTAT+AGG - chr2.3:17634719-17634738 MS.gene99779:intron 15.0%
!! TTGAATCCAATTAAAATATT+CGG - chr2.3:17637312-17637331 MS.gene99779:intron 15.0%
!!! CTACACTTTAAAATTTAAAA+TGG + chr2.3:17635129-17635148 None:intergenic 15.0%
!!! GATTATTTTTTATGACATTA+AGG - chr2.3:17634894-17634913 MS.gene99779:intron 15.0%
!!! TAATGCTTTAAAAATTTGAA+AGG + chr2.3:17636568-17636587 None:intergenic 15.0%
!!! TTATTTTCAGAAGAAAATTA+CGG + chr2.3:17637434-17637453 None:intergenic 15.0%
!!! TTGGTTATTTTTTAATGTAT+AGG - chr2.3:17636964-17636983 MS.gene99779:intron 15.0%
!! AGTTCTATAAATGTTATGTT+TGG - chr2.3:17635951-17635970 MS.gene99779:CDS 20.0%
!! CAAATACAGCAAAATATATT+TGG + chr2.3:17634275-17634294 None:intergenic 20.0%
!! CAGTTTACTTAATTTAAATC+TGG - chr2.3:17635203-17635222 MS.gene99779:intron 20.0%
!! CTAACTAAAAATTTAACAGA+CGG + chr2.3:17635407-17635426 None:intergenic 20.0%
!! GCTATGATTATATATTATTC+TGG - chr2.3:17635486-17635505 MS.gene99779:intron 20.0%
!! TGTCATAAAAAATAATCGAA+AGG + chr2.3:17634891-17634910 None:intergenic 20.0%
!! TTTACTTAATTTAAATCTGG+CGG - chr2.3:17635206-17635225 MS.gene99779:intron 20.0%
!!! AAAATATATTTGGGTTTTGT+GGG + chr2.3:17634265-17634284 None:intergenic 20.0%
!!! AAGTAATGATTGTTTTACTA+TGG - chr2.3:17636738-17636757 MS.gene99779:intron 20.0%
!!! AATTTTTAAAGCATTATCCT+TGG - chr2.3:17636572-17636591 MS.gene99779:intron 20.0%
!!! ACATCAGTTAAATGAATTTT+AGG + chr2.3:17637255-17637274 None:intergenic 20.0%
!!! ATTGATAGTATATAAGGTTT+TGG + chr2.3:17636714-17636733 None:intergenic 20.0%
!!! ATTTTTAAAGCATTATCCTT+GGG - chr2.3:17636573-17636592 MS.gene99779:intron 20.0%
!!! TTCTGAAAATAACTTCATAT+TGG - chr2.3:17637442-17637461 MS.gene99779:CDS 20.0%
!!! TTCTTCATGTTTATTTTTTG+AGG - chr2.3:17634861-17634880 MS.gene99779:intron 20.0%
!!! TTCTTCATTGATAGTATATA+AGG + chr2.3:17636720-17636739 None:intergenic 20.0%
! AACTCAAACTTGAGATTAAA+TGG + chr2.3:17635247-17635266 None:intergenic 25.0%
! AAGAGAGAAATTAGTAAGAT+GGG + chr2.3:17635578-17635597 None:intergenic 25.0%
! AATACATAGAAAAGCCAATT+TGG + chr2.3:17635179-17635198 None:intergenic 25.0%
! AATCCAATTAAAATATTCGG+TGG - chr2.3:17637315-17637334 MS.gene99779:intron 25.0%
! AATTTAAATTGAGCAGAATG+TGG - chr2.3:17635991-17636010 MS.gene99779:CDS 25.0%
! ATAACCAAAATTAAGTTCAC+TGG + chr2.3:17636952-17636971 None:intergenic 25.0%
! ATACATAGAAAAGCCAATTT+GGG + chr2.3:17635178-17635197 None:intergenic 25.0%
! ATACTAAAGCCTATTTGTAA+AGG + chr2.3:17636601-17636620 None:intergenic 25.0%
! ATGGATTCTCATATAAAGTT+GGG + chr2.3:17637353-17637372 None:intergenic 25.0%
! ATTTAAATTGAGCAGAATGT+GGG - chr2.3:17635992-17636011 MS.gene99779:CDS 25.0%
! CAAAAAGAAGAATAAAGAAC+TGG + chr2.3:17635522-17635541 None:intergenic 25.0%
! CAACAACATTTGTAACAAAA+TGG + chr2.3:17635015-17635034 None:intergenic 25.0%
! CTGAGTTATGTATTTGAATA+GGG - chr2.3:17636064-17636083 MS.gene99779:intron 25.0%
! GAAAATTCACTGTTTGTTTA+TGG - chr2.3:17634975-17634994 MS.gene99779:intron 25.0%
! TAAGAGAGAAATTAGTAAGA+TGG + chr2.3:17635579-17635598 None:intergenic 25.0%
! TAATAGCTTAACTAAGTTGT+TGG + chr2.3:17634350-17634369 None:intergenic 25.0%
! TATAATCATAGCAAGGAAAT+TGG + chr2.3:17635478-17635497 None:intergenic 25.0%
! TGAGTTATGTATTTGAATAG+GGG - chr2.3:17636065-17636084 MS.gene99779:intron 25.0%
! TTCACTCAAGTAAAAAACTA+TGG + chr2.3:17636476-17636495 None:intergenic 25.0%
! TTGATGAAAATGTCAAAAGA+GGG + chr2.3:17635671-17635690 None:intergenic 25.0%
! TTTGATGAAAATGTCAAAAG+AGG + chr2.3:17635672-17635691 None:intergenic 25.0%
!! AAAACTTCTTCCTTTTATTG+CGG - chr2.3:17634674-17634693 MS.gene99779:intron 25.0%
!! AATGGATTCTCATATAAAGT+TGG + chr2.3:17637354-17637373 None:intergenic 25.0%
!! AATTCTTTTACTGCACATAA+AGG + chr2.3:17634615-17634634 None:intergenic 25.0%
!! ATTCTTTTACTGCACATAAA+GGG + chr2.3:17634614-17634633 None:intergenic 25.0%
!! CATTTTGTTACAAATGTTGT+TGG - chr2.3:17635013-17635032 MS.gene99779:intron 25.0%
!! TAATCCAGTGAACTTAATTT+TGG - chr2.3:17636945-17636964 MS.gene99779:intron 25.0%
!! TATAATTATGCCAGTTGTTT+TGG - chr2.3:17636446-17636465 MS.gene99779:intron 25.0%
!! TCGTGATATCATATTTCTAT+TGG + chr2.3:17636664-17636683 None:intergenic 25.0%
!! TGATAAAATGACATTGATTG+AGG - chr2.3:17637188-17637207 MS.gene99779:intron 25.0%
!! TTGATAATACGATCTTAGTT+TGG - chr2.3:17635798-17635817 MS.gene99779:intron 25.0%
!!! ATTTTGAAAAAGATGCATAC+TGG - chr2.3:17635691-17635710 MS.gene99779:intron 25.0%
!!! CAAAATATATTTGGGTTTTG+TGG + chr2.3:17634266-17634285 None:intergenic 25.0%
!!! CAATCAATGTCATTTTATCA+AGG + chr2.3:17637188-17637207 None:intergenic 25.0%
!!! GTTAAATTTTTAGTTAGTGC+CGG - chr2.3:17635410-17635429 MS.gene99779:CDS 25.0%
!!! GTTTAAACTTTAAAATCCGT+TGG - chr2.3:17636370-17636389 MS.gene99779:intron 25.0%
!!! TGTTTTGGATTCAAAAGTTA+AGG - chr2.3:17635770-17635789 MS.gene99779:intron 25.0%
!!! TGTTTTTAACCTCTTTATGT+TGG - chr2.3:17637468-17637487 MS.gene99779:CDS 25.0%
!!! TTCACAATTTTCTCTAGTTT+TGG - chr2.3:17636032-17636051 MS.gene99779:CDS 25.0%
!!! TTGTTTATTTTGGCTATGTT+TGG - chr2.3:17634324-17634343 MS.gene99779:CDS 25.0%
AAAAGATCTTTATCTCTGGA+TGG - chr2.3:17635364-17635383 MS.gene99779:intron 30.0%
AAACACTTGTAAGACTGTTT+GGG + chr2.3:17634552-17634571 None:intergenic 30.0%
AACTAGAGAAAATTGTGAAC+AGG + chr2.3:17636031-17636050 None:intergenic 30.0%
AAGAAGCTGAAAACAGTTTA+TGG - chr2.3:17634497-17634516 MS.gene99779:CDS 30.0%
AATCTCTTTCCTTTATGTGA+TGG - chr2.3:17635054-17635073 MS.gene99779:intron 30.0%
ACTGATTATTTGTAAACCAC+TGG - chr2.3:17636779-17636798 MS.gene99779:intron 30.0%
ACTTGCTTAAGATTAAGAAC+AGG + chr2.3:17635270-17635289 None:intergenic 30.0%
AGTTAAGCTATTATGCTGTA+AGG - chr2.3:17634357-17634376 MS.gene99779:CDS 30.0%
ATCCATTATCCATCACATAA+AGG + chr2.3:17635066-17635085 None:intergenic 30.0%
CAAACAGATGAGAATATTAC+CGG + chr2.3:17635432-17635451 None:intergenic 30.0%
CAATTGAGAAAACAAAAACG+TGG + chr2.3:17636247-17636266 None:intergenic 30.0%
CCTATTCAAATACATAACTC+AGG + chr2.3:17636066-17636085 None:intergenic 30.0%
CCTGAGTTATGTATTTGAAT+AGG - chr2.3:17636063-17636082 MS.gene99779:intron 30.0%
GTTAAGCTATTATGCTGTAA+GGG - chr2.3:17634358-17634377 MS.gene99779:CDS 30.0%
GTTGAATCGAAAGAAACTAA+AGG - chr2.3:17634802-17634821 MS.gene99779:intron 30.0%
TAAACACTTGTAAGACTGTT+TGG + chr2.3:17634553-17634572 None:intergenic 30.0%
TACATAATAATAGCATCCAG+TGG + chr2.3:17636798-17636817 None:intergenic 30.0%
TATAGAACTTCTCAAGTCAA+CGG + chr2.3:17635940-17635959 None:intergenic 30.0%
TCATTGCAAAAAGGATAACA+AGG - chr2.3:17634780-17634799 MS.gene99779:intron 30.0%
TCTAGTCTATTTGTGACATT+TGG - chr2.3:17635289-17635308 MS.gene99779:intron 30.0%
TGTTGAAAACAACAAACCAA+CGG + chr2.3:17636389-17636408 None:intergenic 30.0%
! AAACTTCTTCCTTTTATTGC+GGG - chr2.3:17634675-17634694 MS.gene99779:intron 30.0%
! ATAATACGATCTTAGTTTGG+TGG - chr2.3:17635801-17635820 MS.gene99779:intron 30.0%
! TAAACAATGCTATTTGATGC+TGG - chr2.3:17636998-17637017 MS.gene99779:intron 30.0%
! TTGTTATCCTTTTTGCAATG+AGG + chr2.3:17634781-17634800 None:intergenic 30.0%
!! ATTGTTTTACTATGGTTGCA+TGG - chr2.3:17636746-17636765 MS.gene99779:intron 30.0%
!! CAATTGTTGATGACCATATA+TGG - chr2.3:17636261-17636280 MS.gene99779:CDS 30.0%
!! CTCATCTGTTTGTTATCTTA+AGG - chr2.3:17635440-17635459 MS.gene99779:CDS 30.0%
!! GAGTTCGGATTTGTTTATTT+TGG - chr2.3:17634314-17634333 MS.gene99779:CDS 30.0%
!! TTCCTTTATGTGATGGATAA+TGG - chr2.3:17635061-17635080 MS.gene99779:intron 30.0%
!!! GGGTTATTGGTTTTTGATTA+TGG - chr2.3:17634695-17634714 MS.gene99779:intron 30.0%
!!! GTTTGTGTTTGTTTTGAGTT+CGG - chr2.3:17634299-17634318 MS.gene99779:CDS 30.0%
AAAAATAAGCGCAAGCATCT+TGG - chr2.3:17636422-17636441 MS.gene99779:intron 35.0%
AAACTACCTTGAAGAGCTTA+TGG - chr2.3:17634474-17634493 MS.gene99779:CDS 35.0%
AACATTGCCGATGGATAAAT+TGG - chr2.3:17636533-17636552 MS.gene99779:intron 35.0%
AACCAATAACCCGCAATAAA+AGG + chr2.3:17634687-17634706 None:intergenic 35.0%
AATTTGTCTGACTCATTGTG+AGG + chr2.3:17637153-17637172 None:intergenic 35.0%
ACATTGCCGATGGATAAATT+GGG - chr2.3:17636534-17636553 MS.gene99779:intron 35.0%
AGAAAACAAAAACGTGGTCA+TGG + chr2.3:17636241-17636260 None:intergenic 35.0%
AGAACATAATGGTCATTACC+TGG + chr2.3:17637392-17637411 None:intergenic 35.0%
AGACACAAACCTGGTAATTT+CGG + chr2.3:17636289-17636308 None:intergenic 35.0%
AGGCAAAAGATCTTTATCTC+TGG - chr2.3:17635360-17635379 MS.gene99779:intron 35.0%
ATAATGGTCATTACCTGGTT+TGG + chr2.3:17637387-17637406 None:intergenic 35.0%
ATAGAAAAGCCAATTTGGGA+GGG + chr2.3:17635174-17635193 None:intergenic 35.0%
ATGAAAATGTCAAAAGAGGG+CGG + chr2.3:17635668-17635687 None:intergenic 35.0%
ATTGATTGAGGTCTGCAAAT+TGG - chr2.3:17637200-17637219 MS.gene99779:intron 35.0%
ATTGTCTACACTTCTAGTCT+AGG - chr2.3:17636823-17636842 MS.gene99779:CDS 35.0%
CACAAACCCAATTTATCCAT+CGG + chr2.3:17636543-17636562 None:intergenic 35.0%
CTACAACAACCAACATAAAG+AGG + chr2.3:17637480-17637499 None:intergenic 35.0%
CTGAAATTCACATACACAGA+AGG + chr2.3:17635333-17635352 None:intergenic 35.0%
GGTAATTTCGGAACCATATA+TGG + chr2.3:17636277-17636296 None:intergenic 35.0%
TATATGGTTCCGAAATTACC+AGG - chr2.3:17636277-17636296 MS.gene99779:CDS 35.0%
TCTGCATGAGAATAAAAACG+TGG + chr2.3:17637122-17637141 None:intergenic 35.0%
TGAAAATGAGAATGAAGTCG+AGG - chr2.3:17634154-17634173 MS.gene99779:CDS 35.0%
TGCAAACTACTTGTTTAGGT+TGG - chr2.3:17637276-17637295 MS.gene99779:intron 35.0%
TGCATACTGGAAACTGTTAA+AGG - chr2.3:17635704-17635723 MS.gene99779:intron 35.0%
TGTGTGCAAACTACTTGTTT+AGG - chr2.3:17637272-17637291 MS.gene99779:intron 35.0%
TTCTCTTTGTTCCTGAATAC+AGG + chr2.3:17634200-17634219 None:intergenic 35.0%
! AGAAATTAGTAAGATGGGCT+CGG + chr2.3:17635573-17635592 None:intergenic 35.0%
! CAGGAACAAAGAGAAAGTTT+TGG - chr2.3:17634205-17634224 MS.gene99779:intron 35.0%
! GTATGATTGATGGATCTACA+GGG - chr2.3:17636906-17636925 MS.gene99779:CDS 35.0%
! TACTCTTCTATGCACTGTTT+TGG - chr2.3:17635755-17635774 MS.gene99779:intron 35.0%
! TCATTTTATCAAGGCTTCCT+CGG + chr2.3:17637179-17637198 None:intergenic 35.0%
!! AAAATATTCGGTGGCAGTTT+TGG - chr2.3:17637324-17637343 MS.gene99779:intron 35.0%
!! TTCCTTTTATTGCGGGTTAT+TGG - chr2.3:17634682-17634701 MS.gene99779:intron 35.0%
!!! AAGTTTTGGTTACTTGCTCT+AGG - chr2.3:17634219-17634238 MS.gene99779:intron 35.0%
!!! CTGCCACCGAATATTTTAAT+TGG + chr2.3:17637321-17637340 None:intergenic 35.0%
!!! CTTGCATTTTTTTGCGAATG+TGG - chr2.3:17637025-17637044 MS.gene99779:intron 35.0%
AAATTTAACAGACGGACCGT+TGG + chr2.3:17635399-17635418 None:intergenic 40.0%
AAGGAGGAAAATGCATGAGA+TGG - chr2.3:17637562-17637581 MS.gene99779:CDS 40.0%
AATTTAACAGACGGACCGTT+GGG + chr2.3:17635398-17635417 None:intergenic 40.0%
ACAAAAACGTGGTCATGGAA+AGG + chr2.3:17636236-17636255 None:intergenic 40.0%
AGAAGGTCAAAGCAAAGACA+AGG - chr2.3:17637543-17637562 MS.gene99779:CDS 40.0%
AGTGTGCACAGAGAACATAA+TGG + chr2.3:17637403-17637422 None:intergenic 40.0%
ATGGAGGAATTGAAGCTTAC+TGG - chr2.3:17635624-17635643 MS.gene99779:intron 40.0%
ATGTGAATTTCAGTGCAGGA+AGG - chr2.3:17635340-17635359 MS.gene99779:intron 40.0%
ATTATATGTGTCGCCAAACC+AGG - chr2.3:17637371-17637390 MS.gene99779:intron 40.0%
CAATTTGGGAGGGAAAACAA+AGG + chr2.3:17635164-17635183 None:intergenic 40.0%
CACATATCTGCAAACTCATC+AGG + chr2.3:17637602-17637621 None:intergenic 40.0%
CATAGAAAAGCCAATTTGGG+AGG + chr2.3:17635175-17635194 None:intergenic 40.0%
CCAGGTTCAACATCAAATGT+CGG + chr2.3:17634747-17634766 None:intergenic 40.0%
CCTATTTGTAAAGGAACCCA+AGG + chr2.3:17636592-17636611 None:intergenic 40.0%
CCTTCGGAGTTTCAAAAATC+TGG + chr2.3:17636196-17636215 None:intergenic 40.0%
CCTTGGGTTCCTTTACAAAT+AGG - chr2.3:17636589-17636608 MS.gene99779:intron 40.0%
CGCTTTGCAGAAGAAGAAAA+AGG - chr2.3:17637505-17637524 MS.gene99779:CDS 40.0%
CTATGGCTAACCAAAACAAC+TGG + chr2.3:17636459-17636478 None:intergenic 40.0%
CTGATGAGTTTGCAGATATG+TGG - chr2.3:17637600-17637619 MS.gene99779:CDS 40.0%
CTTACTGGGAATCACCTAAA+AGG - chr2.3:17635639-17635658 MS.gene99779:intron 40.0%
CTTATCCTTCCATCCCAAAA+GGG + chr2.3:17634132-17634151 None:intergenic 40.0%
CTTCTTCCATAAGCTCTTCA+AGG + chr2.3:17634483-17634502 None:intergenic 40.0%
GAAGAGAAAACGAAGCGAAA+AGG - chr2.3:17634049-17634068 MS.gene99779:CDS 40.0%
GTAGATCCATCAATCATACG+TGG + chr2.3:17636905-17636924 None:intergenic 40.0%
GTGTATGTGAATTTCAGTGC+AGG - chr2.3:17635336-17635355 MS.gene99779:intron 40.0%
TCTTATCCTTCCATCCCAAA+AGG + chr2.3:17634133-17634152 None:intergenic 40.0%
TGAAAATGTCAAAAGAGGGC+GGG + chr2.3:17635667-17635686 None:intergenic 40.0%
TGAGAATGAAGTCGAGGTTA+AGG - chr2.3:17634160-17634179 MS.gene99779:intron 40.0%
TGCAAATTCAGACACAAACC+TGG + chr2.3:17636298-17636317 None:intergenic 40.0%
TGGAGGAATTGAAGCTTACT+GGG - chr2.3:17635625-17635644 MS.gene99779:intron 40.0%
TTCTTTGCTAACATTGCCGA+TGG - chr2.3:17636524-17636543 MS.gene99779:intron 40.0%
TTGCAGAAGAAGAAAAAGGC+TGG - chr2.3:17637509-17637528 MS.gene99779:CDS 40.0%
! ATTTTATCAAGGCTTCCTCG+GGG + chr2.3:17637177-17637196 None:intergenic 40.0%
! CATTTTATCAAGGCTTCCTC+GGG + chr2.3:17637178-17637197 None:intergenic 40.0%
! CGTATGATTGATGGATCTAC+AGG - chr2.3:17636905-17636924 MS.gene99779:CDS 40.0%
! GCTCTAGGCGTATTGTTTAT+AGG - chr2.3:17634234-17634253 MS.gene99779:intron 40.0%
! GGAGCAACATCTTCCTTTTT+GGG + chr2.3:17634092-17634111 None:intergenic 40.0%
! TGGAGCAACATCTTCCTTTT+TGG + chr2.3:17634093-17634112 None:intergenic 40.0%
! TGGTTTGGCGACACATATAA+TGG + chr2.3:17637372-17637391 None:intergenic 40.0%
! TTAGCCTTTCTATGGTCCTT+CGG + chr2.3:17636212-17636231 None:intergenic 40.0%
! TTTATGTGCGCACTTTTCTG+AGG - chr2.3:17635874-17635893 MS.gene99779:intron 40.0%
!! TACTTGTTTAGGTTGGTCCA+CGG - chr2.3:17637283-17637302 MS.gene99779:intron 40.0%
!!! CCAGATTTTTGAAACTCCGA+AGG - chr2.3:17636193-17636212 MS.gene99779:intron 40.0%
!!! CTTAGTTTGGTGGTGCTTTT+GGG - chr2.3:17635811-17635830 MS.gene99779:intron 40.0%
!!! CTTTGTTTTCCCTCCCAAAT+TGG - chr2.3:17635162-17635181 MS.gene99779:intron 40.0%
!!! GCGCACATGCATTTTTTTCT+TGG - chr2.3:17636106-17636125 MS.gene99779:intron 40.0%
!!! TCTTAGTTTGGTGGTGCTTT+TGG - chr2.3:17635810-17635829 MS.gene99779:intron 40.0%
!!! TTAGTTTGGTGGTGCTTTTG+GGG - chr2.3:17635812-17635831 MS.gene99779:intron 40.0%
AACTCCGAAGGACCATAGAA+AGG - chr2.3:17636205-17636224 MS.gene99779:intron 45.0%
ACGCTACCACGTATGATTGA+TGG - chr2.3:17636896-17636915 MS.gene99779:CDS 45.0%
AGGTCAAAGCAAAGACAAGG+AGG - chr2.3:17637546-17637565 MS.gene99779:CDS 45.0%
ATGGTGCTTCACCTGTATTC+AGG - chr2.3:17634186-17634205 MS.gene99779:intron 45.0%
ATTGGATTCAAGCAGAACCG+TGG + chr2.3:17637303-17637322 None:intergenic 45.0%
ATTTAACAGACGGACCGTTG+GGG + chr2.3:17635397-17635416 None:intergenic 45.0%
CCGACATTTGATGTTGAACC+TGG - chr2.3:17634744-17634763 MS.gene99779:intron 45.0%
GAAGTCGAGGTTAAGGAGAA+TGG - chr2.3:17634167-17634186 MS.gene99779:intron 45.0%
GAGATGCTGTTGCAGGTATT+TGG - chr2.3:17635726-17635745 MS.gene99779:intron 45.0%
GCAAGACACAAGAGTCAGAT+GGG + chr2.3:17635091-17635110 None:intergenic 45.0%
GCTTCTGCCTCATTGCAAAA+AGG - chr2.3:17634771-17634790 MS.gene99779:intron 45.0%
GGCTGGAACATTTGCAAAGA+AGG - chr2.3:17637526-17637545 MS.gene99779:CDS 45.0%
GTTAAAGGAGATGCTGTTGC+AGG - chr2.3:17635719-17635738 MS.gene99779:intron 45.0%
TGCAAGACACAAGAGTCAGA+TGG + chr2.3:17635092-17635111 None:intergenic 45.0%
TGTGCACTGAAAAGCAGTGA+AGG + chr2.3:17635602-17635621 None:intergenic 45.0%
! AATCATACGTGGTAGCGTCA+TGG + chr2.3:17636894-17636913 None:intergenic 45.0%
! CTGCACATAAAGGGCTTGTT+TGG + chr2.3:17634605-17634624 None:intergenic 45.0%
! CTTTTCAGTGCACACAATGG+AGG - chr2.3:17635608-17635627 MS.gene99779:intron 45.0%
! GGAAAGGCTTAGCCTTTCTA+TGG + chr2.3:17636220-17636239 None:intergenic 45.0%
!! ATATTCGGTGGCAGTTTTGG+AGG - chr2.3:17637327-17637346 MS.gene99779:intron 45.0%
!! CTGCTTTTCAGTGCACACAA+TGG - chr2.3:17635605-17635624 MS.gene99779:intron 45.0%
AAGCGAAAAGGCTGAAGCTG+TGG - chr2.3:17634061-17634080 MS.gene99779:CDS 50.0%
AATGAGGCAGAAGCGATACC+AGG + chr2.3:17634765-17634784 None:intergenic 50.0%
CTCAACAAGCTCGTTCAAGG+TGG + chr2.3:17634830-17634849 None:intergenic 50.0%
GAGCTCAACAAGCTCGTTCA+AGG + chr2.3:17634833-17634852 None:intergenic 50.0%
GAGTCAGACAAATTACCCCG+AGG - chr2.3:17637159-17637178 MS.gene99779:intron 50.0%
TGGATGGCAAAATGCCCCAA+CGG - chr2.3:17635380-17635399 MS.gene99779:CDS 50.0%
! AGACCAGTGAGGACCCTTTT+GGG - chr2.3:17634116-17634135 MS.gene99779:CDS 50.0%
AGCTGTGGCTGTGCCCAAAA+AGG - chr2.3:17634076-17634095 MS.gene99779:CDS 55.0%
CATCCCAAAAGGGTCCTCAC+TGG + chr2.3:17634122-17634141 None:intergenic 55.0%
CTCATCAGGCTCCAGAGGAT+TGG + chr2.3:17637588-17637607 None:intergenic 55.0%
GCAAACTCATCAGGCTCCAG+AGG + chr2.3:17637593-17637612 None:intergenic 55.0%
GCATGAGATGGCCAATCCTC+TGG - chr2.3:17637574-17637593 MS.gene99779:CDS 55.0%
TTGCTCCAGAGAGACCAGTG+AGG - chr2.3:17634105-17634124 MS.gene99779:CDS 55.0%
! AAAGAGGGCGGGAGCCTTTT+AGG + chr2.3:17635656-17635675 None:intergenic 55.0%
! GAGACCAGTGAGGACCCTTT+TGG - chr2.3:17634115-17634134 MS.gene99779:CDS 55.0%
!! CAGTGAGGACCCTTTTGGGA+TGG - chr2.3:17634120-17634139 MS.gene99779:CDS 55.0%
!!! GAGGACCCTTTTGGGATGGA+AGG - chr2.3:17634124-17634143 MS.gene99779:CDS 55.0%
! AGGGTCCTCACTGGTCTCTC+TGG + chr2.3:17634113-17634132 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 17634044 17637631 17634044 ID=MS.gene99779
chr2.3 mRNA 17634044 17637631 17634044 ID=MS.gene99779.t1;Parent=MS.gene99779
chr2.3 exon 17637420 17637631 17637420 ID=MS.gene99779.t1.exon1;Parent=MS.gene99779.t1
chr2.3 CDS 17637420 17637631 17637420 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
chr2.3 exon 17636793 17636934 17636793 ID=MS.gene99779.t1.exon2;Parent=MS.gene99779.t1
chr2.3 CDS 17636793 17636934 17636793 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
chr2.3 exon 17636244 17636322 17636244 ID=MS.gene99779.t1.exon3;Parent=MS.gene99779.t1
chr2.3 CDS 17636244 17636322 17636244 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
chr2.3 exon 17635935 17636059 17635935 ID=MS.gene99779.t1.exon4;Parent=MS.gene99779.t1
chr2.3 CDS 17635935 17636059 17635935 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
chr2.3 exon 17635377 17635478 17635377 ID=MS.gene99779.t1.exon5;Parent=MS.gene99779.t1
chr2.3 CDS 17635377 17635478 17635377 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
chr2.3 exon 17634466 17634534 17634466 ID=MS.gene99779.t1.exon6;Parent=MS.gene99779.t1
chr2.3 CDS 17634466 17634534 17634466 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
chr2.3 exon 17634283 17634381 17634283 ID=MS.gene99779.t1.exon7;Parent=MS.gene99779.t1
chr2.3 CDS 17634283 17634381 17634283 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
chr2.3 exon 17634044 17634175 17634044 ID=MS.gene99779.t1.exon8;Parent=MS.gene99779.t1
chr2.3 CDS 17634044 17634175 17634044 ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1
Gene Sequence

>MS.gene99779

ATGGGGAAGAGAAAACGAAGCGAAAAGGCTGAAGCTGTGGCTGTGCCCAAAAAGGAAGATGTTGCTCCAGAGAGACCAGTGAGGACCCTTTTGGGATGGAAGGATAAGAATGAAAATGAGAATGAAGTCGAGGTTAAGGAGAATGGTGCTTCACCTGTATTCAGGAACAAAGAGAAAGTTTTGGTTACTTGCTCTAGGCGTATTGTTTATAGGTACAACCCACAAAACCCAAATATATTTTGCTGTATTTGCACAGTTTGTGTTTGTTTTGAGTTCGGATTTGTTTATTTTGGCTATGTTTGGCCAACAACTTAGTTAAGCTATTATGCTGTAAGGGTTTATCATGTAAGTGCTTCTTTATAAATTATTTATGTAACAAAAATTAAATTAATGTCAAATGGTTTTGATATAAGCTATAAGTTGTATTCATAAACTACCTTGAAGAGCTTATGGAAGAAGCTGAAAACAGTTTATGGACATGTCATATGTTGTTTCTAGAAGCTGTCCCAAACAGTCTTACAAGTGTTTATTCTTGTAGATAAATTTAAATAATGCAATCCAAACAAGCCCTTTATGTGCAGTAAAAGAATTGTATCAGAATGCTCTTGTTTGTATGATATTAAGTAATAAAAAACTTCTTCCTTTTATTGCGGGTTATTGGTTTTTGATTATGGTATTGATCATAAACTTATTATAGGTACCGACATTTGATGTTGAACCTGGTATCGCTTCTGCCTCATTGCAAAAAGGATAACAAGGTTGAATCGAAAGAAACTAAAGGCGCCACCTTGAACGAGCTTGTTGAGCTCAAAAACTGTTCTTCATGTTTATTTTTTGAGGTATTCCTTTCGATTATTTTTTATGACATTAAGGTTTTTCATTGACAACTATGCATTATGTTTATGAGCTATTCTATGTTGTCGTTGAGTTAGAAAATTCACTGTTTGTTTATGGTGTGAAGAATTATTCCATTTTGTTACAAATGTTGTTGGTTAGTTTCAAATTGATATAATCTCTTTCCTTTATGTGATGGATAATGGATTACCCATCTGACTCTTGTGTCTTGCAGATTTTTGTTTTATCCATTTTAAATTTTAAAGTGTAGAACACTTTCACTCCTTTGTTTTCCCTCCCAAATTGGCTTTTCTATGTATTTACACAGTTTACTTAATTTAAATCTGGCGGCTGAGACAACATTTTCCATTTAATCTCAAGTTTGAGTTCCTGTTCTTAATCTTAAGCAAGTCTAGTCTATTTGTGACATTTGGATAACTATCTTATATCTACCTTCTGTGTATGTGAATTTCAGTGCAGGAAGGCAAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAACGGTCCGTCTGTTAAATTTTTAGTTAGTGCCGGTAATATTCTCATCTGTTTGTTATCTTAAGGTTACTACATAAACCAATTTCCTTGCTATGATTATATATTATTCTGGTATCAGTAATCCAGTTCTTTATTCTTCTTTTTGAATTATGATCGTCTCTCTTTCATTCTCTCCGAGCCCATCTTACTAATTTCTCTCTTACCTTCACTGCTTTTCAGTGCACACAATGGAGGAATTGAAGCTTACTGGGAATCACCTAAAAGGCTCCCGCCCTCTTTTGACATTTTCATCAAATTTTGAAAAAGATGCATACTGGAAACTGTTAAAGGAGATGCTGTTGCAGGTATTTGGTTTGATTACTCTTCTATGCACTGTTTTGGATTCAAAAGTTAAGGTTATTTTGATAATACGATCTTAGTTTGGTGGTGCTTTTGGGGTTTTGCGTTGTATGATTTACTAGTATGATAGAAAGTTGTTTTATGTGCGCACTTTTCTGAGGTATTTGTGATCTATATGCTTAAAAGTATCTTAATCTGTCACCGTTGACTTGAGAAGTTCTATAAATGTTATGTTTGGCTCTTGTCAAAGTTTAAAATTTAAATTGAGCAGAATGTGGGACAAGCATTTATTCCTGTTCACAATTTTCTCTAGTTTTGGTTCTTGTACCTGAGTTATGTATTTGAATAGGGGTGTGAATTGTGTGAGCGTGCGCACATGCATTTTTTTCTTGGTTATTAGAATAATCAAAGTATACACAATTTTGATTATTGCTGATGTAGTCTTTCTTTTCTTTAACCAGATTTTTGAAACTCCGAAGGACCATAGAAAGGCTAAGCCTTTCCATGACCACGTTTTTGTTTTCTCAATTGTTGATGACCATATATGGTTCCGAAATTACCAGGTTTGTGTCTGAATTTGCAAAAGATCTTAATAATTGACATAACATTGTTTTCAAATTTGCATTATTTTAGAGTTTAAACTTTAAAATCCGTTGGTTTGTTGTTTTCAACATCACTCTACTAAAAAAAATAAGCGCAAGCATCTTGGTTATAATTATGCCAGTTGTTTTGGTTAGCCATAGTTTTTTACTTGAGTGAAATTGAGATGACAAATCTAAATGTTCTCTTTCTTTGCTAACATTGCCGATGGATAAATTGGGTTTGTGAGCCTTTCAAATTTTTAAAGCATTATCCTTGGGTTCCTTTACAAATAGGCTTTAGTATATGAAATAAAAATATACTTAAAACAAAATTACTTTGAAGACCAATAGAAATATGATATCACGATGAGTCTAGATTTGATGTAAAATCAAACCAAAACCTTATATACTATCAATGAAGAAGTAATGATTGTTTTACTATGGTTGCATGGAAAGCTTTCAACTGATTATTTGTAAACCACTGGATGCTATTATTATGTAATTACATTGTCTACACTTCTAGTCTAGGAGCAAAGAAAATGCATTCTTCACTTAGATATGCATGTCTTAAACACCATGACGCTACCACGTATGATTGATGGATCTACAGGGTTACTTACTTTTATACTAATCCAGTGAACTTAATTTTGGTTATTTTTTAATGTATAGGTCTTAATAATTTAAACAATGCTATTTGATGCTGGTACACTTGCATTTTTTTGCGAATGTGGCTTTGCAATGCTATTCTCATTTGCTGCTCTATGTTGTCATTGATGCTTACTGAACAATAAAACATAATAAACCACGTTTTTATTCTCATGCAGATCTCTGTTCCTCACAATGAGTCAGACAAATTACCCCGAGGAAGCCTTGATAAAATGACATTGATTGAGGTCTGCAAATTGGCTCATTGATTTATCTTTGATCTGTCAATTCCTAAAATTCATTTAACTGATGTGTGCAAACTACTTGTTTAGGTTGGTCCACGGTTCTGCTTGAATCCAATTAAAATATTCGGTGGCAGTTTTGGAGGCCCAACTTTATATGAGAATCCATTATATGTGTCGCCAAACCAGGTAATGACCATTATGTTCTCTGTGCACACTTATAATCTCCGTAATTTTCTTCTGAAAATAACTTCATATTGGTTGTGTTTTTAACCTCTTTATGTTGGTTGTTGTAGATTCGCGCTTTGCAGAAGAAGAAAAAGGCTGGAACATTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGGCCAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTAA

Protein sequence

>MS.gene99779.t1

MGKRKRSEKAEAVAVPKKEDVAPERPVRTLLGWKDKNENENEVEVKENGASPVFRNKEKVLVTCSRRIVYRYRHLMLNLVSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKAKDLYLWMAKCPNGPSVKFLVSAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAYWKLLKEMLLQIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGSLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALQKKKKAGTFAKKVKAKTRRKMHEMANPLEPDEFADMWKD