Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99779.t1 | XP_013465818.1 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.50E-176 | 628.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99779.t1 | Q9C928 | 77.0 | 317 | 71 | 1 | 3 | 319 | 4 | 318 | 3.0e-144 | 512.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99779.t1 | A0A072VCY8 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.1e-176 | 628.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99779.t1 | MTR_1g012990 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
MS.gene99779.t1 | MTR_7g069430 | 97.179 | 319 | 5 | 1 | 1 | 319 | 1 | 315 | 0.0 | 638 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene99779.t1 | AT3G15460 | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
MS.gene99779.t1 | AT1G52930 | 78.125 | 320 | 67 | 2 | 1 | 319 | 1 | 318 | 0.0 | 504 |
Find 69 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTCTAGGCGTATTGTTTAT+AGG | 0.224171 | 2.3:-17637419 | MS.gene99779:intron |
CAATTGTTGATGACCATATA+TGG | 0.275985 | 2.3:-17635392 | MS.gene99779:CDS |
AAAATATTCGGTGGCAGTTT+TGG | 0.276214 | 2.3:-17634329 | MS.gene99779:CDS |
CGCTTTGCAGAAGAAGAAAA+AGG | 0.301141 | 2.3:-17634148 | MS.gene99779:CDS |
ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 2.3:-17636029 | MS.gene99779:CDS |
TGGTTTGGCGACACATATAA+TGG | 0.307289 | 2.3:+17634284 | None:intergenic |
GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 2.3:-17637538 | MS.gene99779:CDS |
GGTAATTTCGGAACCATATA+TGG | 0.326418 | 2.3:+17635379 | None:intergenic |
TGCATACTGGAAACTGTTAA+AGG | 0.335855 | 2.3:-17635949 | MS.gene99779:CDS |
AGACACAAACCTGGTAATTT+CGG | 0.336053 | 2.3:+17635367 | None:intergenic |
TTGAATCCAATTAAAATATT+CGG | 0.338246 | 2.3:-17634341 | MS.gene99779:CDS |
TGAGAATGAAGTCGAGGTTA+AGG | 0.351881 | 2.3:-17637493 | MS.gene99779:CDS |
TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 2.3:+17637456 | None:intergenic |
ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 2.3:-17637467 | MS.gene99779:CDS |
GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 2.3:-17636882 | MS.gene99779:CDS |
CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 2.3:-17636014 | MS.gene99779:CDS |
AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 2.3:+17637543 | None:intergenic |
GGAAAGGCTTAGCCTTTCTA+TGG | 0.386528 | 2.3:+17635436 | None:intergenic |
GTTAAAGGAGATGCTGTTGC+AGG | 0.390320 | 2.3:-17635934 | MS.gene99779:intron |
ATAATGGTCATTACCTGGTT+TGG | 0.399636 | 2.3:+17634269 | None:intergenic |
CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 2.3:-17637448 | MS.gene99779:CDS |
AATTTAACAGACGGACCGTT+GGG | 0.405139 | 2.3:+17636258 | None:intergenic |
AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 2.3:-17637577 | MS.gene99779:CDS |
CACATATCTGCAAACTCATC+AGG | 0.414305 | 2.3:+17634054 | None:intergenic |
TTAGCCTTTCTATGGTCCTT+CGG | 0.432964 | 2.3:+17635444 | None:intergenic |
GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 2.3:+17636823 | None:intergenic |
GGCTGGAACATTTGCAAAGA+AGG | 0.442018 | 2.3:-17634127 | MS.gene99779:CDS |
AATGGATTCTCATATAAAGT+TGG | 0.442109 | 2.3:+17634302 | None:intergenic |
TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 2.3:+17637523 | None:intergenic |
GCATGAGATGGCCAATCCTC+TGG | 0.463080 | 2.3:-17634079 | MS.gene99779:CDS |
ATGGATTCTCATATAAAGTT+GGG | 0.466075 | 2.3:+17634303 | None:intergenic |
AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 2.3:-17636293 | MS.gene99779:CDS |
TGATAAAATGACATTGATTG+AGG | 0.479641 | 2.3:-17634465 | MS.gene99779:intron |
CTCATCAGGCTCCAGAGGAT+TGG | 0.500537 | 2.3:+17634068 | None:intergenic |
CCGACATTTGATGTTGAACC+TGG | 0.503744 | 2.3:-17636909 | MS.gene99779:CDS |
TTTGATGAAAATGTCAAAAG+AGG | 0.513130 | 2.3:+17635984 | None:intergenic |
TATATGGTTCCGAAATTACC+AGG | 0.519157 | 2.3:-17635376 | MS.gene99779:intron |
TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 2.3:-17636028 | MS.gene99779:CDS |
CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 2.3:+17637524 | None:intergenic |
ATTATATGTGTCGCCAAACC+AGG | 0.539453 | 2.3:-17634282 | MS.gene99779:intron |
AAATTTAACAGACGGACCGT+TGG | 0.547683 | 2.3:+17636257 | None:intergenic |
AATGAGGCAGAAGCGATACC+AGG | 0.551260 | 2.3:+17636891 | None:intergenic |
CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 2.3:+17637534 | None:intergenic |
GAAGTCGAGGTTAAGGAGAA+TGG | 0.558717 | 2.3:-17637486 | MS.gene99779:CDS |
GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 2.3:-17637604 | MS.gene99779:CDS |
AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 2.3:-17636289 | MS.gene99779:CDS |
TTGATGAAAATGTCAAAAGA+GGG | 0.581244 | 2.3:+17635985 | None:intergenic |
AATCCAATTAAAATATTCGG+TGG | 0.581638 | 2.3:-17634338 | MS.gene99779:CDS |
GCAAACTCATCAGGCTCCAG+AGG | 0.583650 | 2.3:+17634063 | None:intergenic |
AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 2.3:-17634091 | MS.gene99779:CDS |
GTTGAATCGAAAGAAACTAA+AGG | 0.591875 | 2.3:-17636851 | MS.gene99779:CDS |
AACTCCGAAGGACCATAGAA+AGG | 0.592135 | 2.3:-17635448 | MS.gene99779:CDS |
TGAAAATGTCAAAAGAGGGC+GGG | 0.598198 | 2.3:+17635989 | None:intergenic |
TACTTGTTTAGGTTGGTCCA+CGG | 0.602021 | 2.3:-17634370 | MS.gene99779:intron |
CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 2.3:-17634053 | MS.gene99779:CDS |
AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 2.3:-17637592 | MS.gene99779:CDS |
AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 2.3:-17634110 | MS.gene99779:CDS |
AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 2.3:+17634503 | None:intergenic |
TGAAAATGAGAATGAAGTCG+AGG | 0.626692 | 2.3:-17637499 | MS.gene99779:CDS |
ATTGGATTCAAGCAGAACCG+TGG | 0.628585 | 2.3:+17634353 | None:intergenic |
ATGAAAATGTCAAAAGAGGG+CGG | 0.629935 | 2.3:+17635988 | None:intergenic |
AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 2.3:-17634107 | MS.gene99779:CDS |
TGGATGGCAAAATGCCCCAA+CGG | 0.651109 | 2.3:-17636273 | MS.gene99779:CDS |
ATGTGAATTTCAGTGCAGGA+AGG | 0.660599 | 2.3:-17636313 | MS.gene99779:intron |
CCAGGTTCAACATCAAATGT+CGG | 0.661077 | 2.3:+17636909 | None:intergenic |
ATTTAACAGACGGACCGTTG+GGG | 0.668767 | 2.3:+17636259 | None:intergenic |
CTCAACAAGCTCGTTCAAGG+TGG | 0.686995 | 2.3:+17636826 | None:intergenic |
TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 2.3:-17637548 | MS.gene99779:CDS |
GAGTCAGACAAATTACCCCG+AGG | 0.769107 | 2.3:-17634494 | MS.gene99779:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATTAAATTAATGTCAAA+TGG | - | chr2.3:17634422-17634441 | MS.gene99779:intron | 10.0% |
!! | AAATACAGCAAAATATATTT+GGG | + | chr2.3:17634274-17634293 | None:intergenic | 15.0% |
!! | AATAATATATAATCATAGCA+AGG | + | chr2.3:17635485-17635504 | None:intergenic | 15.0% |
!! | ATTGATCATAAACTTATTAT+AGG | - | chr2.3:17634719-17634738 | MS.gene99779:intron | 15.0% |
!! | TTGAATCCAATTAAAATATT+CGG | - | chr2.3:17637312-17637331 | MS.gene99779:intron | 15.0% |
!!! | CTACACTTTAAAATTTAAAA+TGG | + | chr2.3:17635129-17635148 | None:intergenic | 15.0% |
!!! | GATTATTTTTTATGACATTA+AGG | - | chr2.3:17634894-17634913 | MS.gene99779:intron | 15.0% |
!!! | TAATGCTTTAAAAATTTGAA+AGG | + | chr2.3:17636568-17636587 | None:intergenic | 15.0% |
!!! | TTATTTTCAGAAGAAAATTA+CGG | + | chr2.3:17637434-17637453 | None:intergenic | 15.0% |
!!! | TTGGTTATTTTTTAATGTAT+AGG | - | chr2.3:17636964-17636983 | MS.gene99779:intron | 15.0% |
!! | AGTTCTATAAATGTTATGTT+TGG | - | chr2.3:17635951-17635970 | MS.gene99779:CDS | 20.0% |
!! | CAAATACAGCAAAATATATT+TGG | + | chr2.3:17634275-17634294 | None:intergenic | 20.0% |
!! | CAGTTTACTTAATTTAAATC+TGG | - | chr2.3:17635203-17635222 | MS.gene99779:intron | 20.0% |
!! | CTAACTAAAAATTTAACAGA+CGG | + | chr2.3:17635407-17635426 | None:intergenic | 20.0% |
!! | GCTATGATTATATATTATTC+TGG | - | chr2.3:17635486-17635505 | MS.gene99779:intron | 20.0% |
!! | TGTCATAAAAAATAATCGAA+AGG | + | chr2.3:17634891-17634910 | None:intergenic | 20.0% |
!! | TTTACTTAATTTAAATCTGG+CGG | - | chr2.3:17635206-17635225 | MS.gene99779:intron | 20.0% |
!!! | AAAATATATTTGGGTTTTGT+GGG | + | chr2.3:17634265-17634284 | None:intergenic | 20.0% |
!!! | AAGTAATGATTGTTTTACTA+TGG | - | chr2.3:17636738-17636757 | MS.gene99779:intron | 20.0% |
!!! | AATTTTTAAAGCATTATCCT+TGG | - | chr2.3:17636572-17636591 | MS.gene99779:intron | 20.0% |
!!! | ACATCAGTTAAATGAATTTT+AGG | + | chr2.3:17637255-17637274 | None:intergenic | 20.0% |
!!! | ATTGATAGTATATAAGGTTT+TGG | + | chr2.3:17636714-17636733 | None:intergenic | 20.0% |
!!! | ATTTTTAAAGCATTATCCTT+GGG | - | chr2.3:17636573-17636592 | MS.gene99779:intron | 20.0% |
!!! | TTCTGAAAATAACTTCATAT+TGG | - | chr2.3:17637442-17637461 | MS.gene99779:CDS | 20.0% |
!!! | TTCTTCATGTTTATTTTTTG+AGG | - | chr2.3:17634861-17634880 | MS.gene99779:intron | 20.0% |
!!! | TTCTTCATTGATAGTATATA+AGG | + | chr2.3:17636720-17636739 | None:intergenic | 20.0% |
! | AACTCAAACTTGAGATTAAA+TGG | + | chr2.3:17635247-17635266 | None:intergenic | 25.0% |
! | AAGAGAGAAATTAGTAAGAT+GGG | + | chr2.3:17635578-17635597 | None:intergenic | 25.0% |
! | AATACATAGAAAAGCCAATT+TGG | + | chr2.3:17635179-17635198 | None:intergenic | 25.0% |
! | AATCCAATTAAAATATTCGG+TGG | - | chr2.3:17637315-17637334 | MS.gene99779:intron | 25.0% |
! | AATTTAAATTGAGCAGAATG+TGG | - | chr2.3:17635991-17636010 | MS.gene99779:CDS | 25.0% |
! | ATAACCAAAATTAAGTTCAC+TGG | + | chr2.3:17636952-17636971 | None:intergenic | 25.0% |
! | ATACATAGAAAAGCCAATTT+GGG | + | chr2.3:17635178-17635197 | None:intergenic | 25.0% |
! | ATACTAAAGCCTATTTGTAA+AGG | + | chr2.3:17636601-17636620 | None:intergenic | 25.0% |
! | ATGGATTCTCATATAAAGTT+GGG | + | chr2.3:17637353-17637372 | None:intergenic | 25.0% |
! | ATTTAAATTGAGCAGAATGT+GGG | - | chr2.3:17635992-17636011 | MS.gene99779:CDS | 25.0% |
! | CAAAAAGAAGAATAAAGAAC+TGG | + | chr2.3:17635522-17635541 | None:intergenic | 25.0% |
! | CAACAACATTTGTAACAAAA+TGG | + | chr2.3:17635015-17635034 | None:intergenic | 25.0% |
! | CTGAGTTATGTATTTGAATA+GGG | - | chr2.3:17636064-17636083 | MS.gene99779:intron | 25.0% |
! | GAAAATTCACTGTTTGTTTA+TGG | - | chr2.3:17634975-17634994 | MS.gene99779:intron | 25.0% |
! | TAAGAGAGAAATTAGTAAGA+TGG | + | chr2.3:17635579-17635598 | None:intergenic | 25.0% |
! | TAATAGCTTAACTAAGTTGT+TGG | + | chr2.3:17634350-17634369 | None:intergenic | 25.0% |
! | TATAATCATAGCAAGGAAAT+TGG | + | chr2.3:17635478-17635497 | None:intergenic | 25.0% |
! | TGAGTTATGTATTTGAATAG+GGG | - | chr2.3:17636065-17636084 | MS.gene99779:intron | 25.0% |
! | TTCACTCAAGTAAAAAACTA+TGG | + | chr2.3:17636476-17636495 | None:intergenic | 25.0% |
! | TTGATGAAAATGTCAAAAGA+GGG | + | chr2.3:17635671-17635690 | None:intergenic | 25.0% |
! | TTTGATGAAAATGTCAAAAG+AGG | + | chr2.3:17635672-17635691 | None:intergenic | 25.0% |
!! | AAAACTTCTTCCTTTTATTG+CGG | - | chr2.3:17634674-17634693 | MS.gene99779:intron | 25.0% |
!! | AATGGATTCTCATATAAAGT+TGG | + | chr2.3:17637354-17637373 | None:intergenic | 25.0% |
!! | AATTCTTTTACTGCACATAA+AGG | + | chr2.3:17634615-17634634 | None:intergenic | 25.0% |
!! | ATTCTTTTACTGCACATAAA+GGG | + | chr2.3:17634614-17634633 | None:intergenic | 25.0% |
!! | CATTTTGTTACAAATGTTGT+TGG | - | chr2.3:17635013-17635032 | MS.gene99779:intron | 25.0% |
!! | TAATCCAGTGAACTTAATTT+TGG | - | chr2.3:17636945-17636964 | MS.gene99779:intron | 25.0% |
!! | TATAATTATGCCAGTTGTTT+TGG | - | chr2.3:17636446-17636465 | MS.gene99779:intron | 25.0% |
!! | TCGTGATATCATATTTCTAT+TGG | + | chr2.3:17636664-17636683 | None:intergenic | 25.0% |
!! | TGATAAAATGACATTGATTG+AGG | - | chr2.3:17637188-17637207 | MS.gene99779:intron | 25.0% |
!! | TTGATAATACGATCTTAGTT+TGG | - | chr2.3:17635798-17635817 | MS.gene99779:intron | 25.0% |
!!! | ATTTTGAAAAAGATGCATAC+TGG | - | chr2.3:17635691-17635710 | MS.gene99779:intron | 25.0% |
!!! | CAAAATATATTTGGGTTTTG+TGG | + | chr2.3:17634266-17634285 | None:intergenic | 25.0% |
!!! | CAATCAATGTCATTTTATCA+AGG | + | chr2.3:17637188-17637207 | None:intergenic | 25.0% |
!!! | GTTAAATTTTTAGTTAGTGC+CGG | - | chr2.3:17635410-17635429 | MS.gene99779:CDS | 25.0% |
!!! | GTTTAAACTTTAAAATCCGT+TGG | - | chr2.3:17636370-17636389 | MS.gene99779:intron | 25.0% |
!!! | TGTTTTGGATTCAAAAGTTA+AGG | - | chr2.3:17635770-17635789 | MS.gene99779:intron | 25.0% |
!!! | TGTTTTTAACCTCTTTATGT+TGG | - | chr2.3:17637468-17637487 | MS.gene99779:CDS | 25.0% |
!!! | TTCACAATTTTCTCTAGTTT+TGG | - | chr2.3:17636032-17636051 | MS.gene99779:CDS | 25.0% |
!!! | TTGTTTATTTTGGCTATGTT+TGG | - | chr2.3:17634324-17634343 | MS.gene99779:CDS | 25.0% |
AAAAGATCTTTATCTCTGGA+TGG | - | chr2.3:17635364-17635383 | MS.gene99779:intron | 30.0% | |
AAACACTTGTAAGACTGTTT+GGG | + | chr2.3:17634552-17634571 | None:intergenic | 30.0% | |
AACTAGAGAAAATTGTGAAC+AGG | + | chr2.3:17636031-17636050 | None:intergenic | 30.0% | |
AAGAAGCTGAAAACAGTTTA+TGG | - | chr2.3:17634497-17634516 | MS.gene99779:CDS | 30.0% | |
AATCTCTTTCCTTTATGTGA+TGG | - | chr2.3:17635054-17635073 | MS.gene99779:intron | 30.0% | |
ACTGATTATTTGTAAACCAC+TGG | - | chr2.3:17636779-17636798 | MS.gene99779:intron | 30.0% | |
ACTTGCTTAAGATTAAGAAC+AGG | + | chr2.3:17635270-17635289 | None:intergenic | 30.0% | |
AGTTAAGCTATTATGCTGTA+AGG | - | chr2.3:17634357-17634376 | MS.gene99779:CDS | 30.0% | |
ATCCATTATCCATCACATAA+AGG | + | chr2.3:17635066-17635085 | None:intergenic | 30.0% | |
CAAACAGATGAGAATATTAC+CGG | + | chr2.3:17635432-17635451 | None:intergenic | 30.0% | |
CAATTGAGAAAACAAAAACG+TGG | + | chr2.3:17636247-17636266 | None:intergenic | 30.0% | |
CCTATTCAAATACATAACTC+AGG | + | chr2.3:17636066-17636085 | None:intergenic | 30.0% | |
CCTGAGTTATGTATTTGAAT+AGG | - | chr2.3:17636063-17636082 | MS.gene99779:intron | 30.0% | |
GTTAAGCTATTATGCTGTAA+GGG | - | chr2.3:17634358-17634377 | MS.gene99779:CDS | 30.0% | |
GTTGAATCGAAAGAAACTAA+AGG | - | chr2.3:17634802-17634821 | MS.gene99779:intron | 30.0% | |
TAAACACTTGTAAGACTGTT+TGG | + | chr2.3:17634553-17634572 | None:intergenic | 30.0% | |
TACATAATAATAGCATCCAG+TGG | + | chr2.3:17636798-17636817 | None:intergenic | 30.0% | |
TATAGAACTTCTCAAGTCAA+CGG | + | chr2.3:17635940-17635959 | None:intergenic | 30.0% | |
TCATTGCAAAAAGGATAACA+AGG | - | chr2.3:17634780-17634799 | MS.gene99779:intron | 30.0% | |
TCTAGTCTATTTGTGACATT+TGG | - | chr2.3:17635289-17635308 | MS.gene99779:intron | 30.0% | |
TGTTGAAAACAACAAACCAA+CGG | + | chr2.3:17636389-17636408 | None:intergenic | 30.0% | |
! | AAACTTCTTCCTTTTATTGC+GGG | - | chr2.3:17634675-17634694 | MS.gene99779:intron | 30.0% |
! | ATAATACGATCTTAGTTTGG+TGG | - | chr2.3:17635801-17635820 | MS.gene99779:intron | 30.0% |
! | TAAACAATGCTATTTGATGC+TGG | - | chr2.3:17636998-17637017 | MS.gene99779:intron | 30.0% |
! | TTGTTATCCTTTTTGCAATG+AGG | + | chr2.3:17634781-17634800 | None:intergenic | 30.0% |
!! | ATTGTTTTACTATGGTTGCA+TGG | - | chr2.3:17636746-17636765 | MS.gene99779:intron | 30.0% |
!! | CAATTGTTGATGACCATATA+TGG | - | chr2.3:17636261-17636280 | MS.gene99779:CDS | 30.0% |
!! | CTCATCTGTTTGTTATCTTA+AGG | - | chr2.3:17635440-17635459 | MS.gene99779:CDS | 30.0% |
!! | GAGTTCGGATTTGTTTATTT+TGG | - | chr2.3:17634314-17634333 | MS.gene99779:CDS | 30.0% |
!! | TTCCTTTATGTGATGGATAA+TGG | - | chr2.3:17635061-17635080 | MS.gene99779:intron | 30.0% |
!!! | GGGTTATTGGTTTTTGATTA+TGG | - | chr2.3:17634695-17634714 | MS.gene99779:intron | 30.0% |
!!! | GTTTGTGTTTGTTTTGAGTT+CGG | - | chr2.3:17634299-17634318 | MS.gene99779:CDS | 30.0% |
AAAAATAAGCGCAAGCATCT+TGG | - | chr2.3:17636422-17636441 | MS.gene99779:intron | 35.0% | |
AAACTACCTTGAAGAGCTTA+TGG | - | chr2.3:17634474-17634493 | MS.gene99779:CDS | 35.0% | |
AACATTGCCGATGGATAAAT+TGG | - | chr2.3:17636533-17636552 | MS.gene99779:intron | 35.0% | |
AACCAATAACCCGCAATAAA+AGG | + | chr2.3:17634687-17634706 | None:intergenic | 35.0% | |
AATTTGTCTGACTCATTGTG+AGG | + | chr2.3:17637153-17637172 | None:intergenic | 35.0% | |
ACATTGCCGATGGATAAATT+GGG | - | chr2.3:17636534-17636553 | MS.gene99779:intron | 35.0% | |
AGAAAACAAAAACGTGGTCA+TGG | + | chr2.3:17636241-17636260 | None:intergenic | 35.0% | |
AGAACATAATGGTCATTACC+TGG | + | chr2.3:17637392-17637411 | None:intergenic | 35.0% | |
AGACACAAACCTGGTAATTT+CGG | + | chr2.3:17636289-17636308 | None:intergenic | 35.0% | |
AGGCAAAAGATCTTTATCTC+TGG | - | chr2.3:17635360-17635379 | MS.gene99779:intron | 35.0% | |
ATAATGGTCATTACCTGGTT+TGG | + | chr2.3:17637387-17637406 | None:intergenic | 35.0% | |
ATAGAAAAGCCAATTTGGGA+GGG | + | chr2.3:17635174-17635193 | None:intergenic | 35.0% | |
ATGAAAATGTCAAAAGAGGG+CGG | + | chr2.3:17635668-17635687 | None:intergenic | 35.0% | |
ATTGATTGAGGTCTGCAAAT+TGG | - | chr2.3:17637200-17637219 | MS.gene99779:intron | 35.0% | |
ATTGTCTACACTTCTAGTCT+AGG | - | chr2.3:17636823-17636842 | MS.gene99779:CDS | 35.0% | |
CACAAACCCAATTTATCCAT+CGG | + | chr2.3:17636543-17636562 | None:intergenic | 35.0% | |
CTACAACAACCAACATAAAG+AGG | + | chr2.3:17637480-17637499 | None:intergenic | 35.0% | |
CTGAAATTCACATACACAGA+AGG | + | chr2.3:17635333-17635352 | None:intergenic | 35.0% | |
GGTAATTTCGGAACCATATA+TGG | + | chr2.3:17636277-17636296 | None:intergenic | 35.0% | |
TATATGGTTCCGAAATTACC+AGG | - | chr2.3:17636277-17636296 | MS.gene99779:CDS | 35.0% | |
TCTGCATGAGAATAAAAACG+TGG | + | chr2.3:17637122-17637141 | None:intergenic | 35.0% | |
TGAAAATGAGAATGAAGTCG+AGG | - | chr2.3:17634154-17634173 | MS.gene99779:CDS | 35.0% | |
TGCAAACTACTTGTTTAGGT+TGG | - | chr2.3:17637276-17637295 | MS.gene99779:intron | 35.0% | |
TGCATACTGGAAACTGTTAA+AGG | - | chr2.3:17635704-17635723 | MS.gene99779:intron | 35.0% | |
TGTGTGCAAACTACTTGTTT+AGG | - | chr2.3:17637272-17637291 | MS.gene99779:intron | 35.0% | |
TTCTCTTTGTTCCTGAATAC+AGG | + | chr2.3:17634200-17634219 | None:intergenic | 35.0% | |
! | AGAAATTAGTAAGATGGGCT+CGG | + | chr2.3:17635573-17635592 | None:intergenic | 35.0% |
! | CAGGAACAAAGAGAAAGTTT+TGG | - | chr2.3:17634205-17634224 | MS.gene99779:intron | 35.0% |
! | GTATGATTGATGGATCTACA+GGG | - | chr2.3:17636906-17636925 | MS.gene99779:CDS | 35.0% |
! | TACTCTTCTATGCACTGTTT+TGG | - | chr2.3:17635755-17635774 | MS.gene99779:intron | 35.0% |
! | TCATTTTATCAAGGCTTCCT+CGG | + | chr2.3:17637179-17637198 | None:intergenic | 35.0% |
!! | AAAATATTCGGTGGCAGTTT+TGG | - | chr2.3:17637324-17637343 | MS.gene99779:intron | 35.0% |
!! | TTCCTTTTATTGCGGGTTAT+TGG | - | chr2.3:17634682-17634701 | MS.gene99779:intron | 35.0% |
!!! | AAGTTTTGGTTACTTGCTCT+AGG | - | chr2.3:17634219-17634238 | MS.gene99779:intron | 35.0% |
!!! | CTGCCACCGAATATTTTAAT+TGG | + | chr2.3:17637321-17637340 | None:intergenic | 35.0% |
!!! | CTTGCATTTTTTTGCGAATG+TGG | - | chr2.3:17637025-17637044 | MS.gene99779:intron | 35.0% |
AAATTTAACAGACGGACCGT+TGG | + | chr2.3:17635399-17635418 | None:intergenic | 40.0% | |
AAGGAGGAAAATGCATGAGA+TGG | - | chr2.3:17637562-17637581 | MS.gene99779:CDS | 40.0% | |
AATTTAACAGACGGACCGTT+GGG | + | chr2.3:17635398-17635417 | None:intergenic | 40.0% | |
ACAAAAACGTGGTCATGGAA+AGG | + | chr2.3:17636236-17636255 | None:intergenic | 40.0% | |
AGAAGGTCAAAGCAAAGACA+AGG | - | chr2.3:17637543-17637562 | MS.gene99779:CDS | 40.0% | |
AGTGTGCACAGAGAACATAA+TGG | + | chr2.3:17637403-17637422 | None:intergenic | 40.0% | |
ATGGAGGAATTGAAGCTTAC+TGG | - | chr2.3:17635624-17635643 | MS.gene99779:intron | 40.0% | |
ATGTGAATTTCAGTGCAGGA+AGG | - | chr2.3:17635340-17635359 | MS.gene99779:intron | 40.0% | |
ATTATATGTGTCGCCAAACC+AGG | - | chr2.3:17637371-17637390 | MS.gene99779:intron | 40.0% | |
CAATTTGGGAGGGAAAACAA+AGG | + | chr2.3:17635164-17635183 | None:intergenic | 40.0% | |
CACATATCTGCAAACTCATC+AGG | + | chr2.3:17637602-17637621 | None:intergenic | 40.0% | |
CATAGAAAAGCCAATTTGGG+AGG | + | chr2.3:17635175-17635194 | None:intergenic | 40.0% | |
CCAGGTTCAACATCAAATGT+CGG | + | chr2.3:17634747-17634766 | None:intergenic | 40.0% | |
CCTATTTGTAAAGGAACCCA+AGG | + | chr2.3:17636592-17636611 | None:intergenic | 40.0% | |
CCTTCGGAGTTTCAAAAATC+TGG | + | chr2.3:17636196-17636215 | None:intergenic | 40.0% | |
CCTTGGGTTCCTTTACAAAT+AGG | - | chr2.3:17636589-17636608 | MS.gene99779:intron | 40.0% | |
CGCTTTGCAGAAGAAGAAAA+AGG | - | chr2.3:17637505-17637524 | MS.gene99779:CDS | 40.0% | |
CTATGGCTAACCAAAACAAC+TGG | + | chr2.3:17636459-17636478 | None:intergenic | 40.0% | |
CTGATGAGTTTGCAGATATG+TGG | - | chr2.3:17637600-17637619 | MS.gene99779:CDS | 40.0% | |
CTTACTGGGAATCACCTAAA+AGG | - | chr2.3:17635639-17635658 | MS.gene99779:intron | 40.0% | |
CTTATCCTTCCATCCCAAAA+GGG | + | chr2.3:17634132-17634151 | None:intergenic | 40.0% | |
CTTCTTCCATAAGCTCTTCA+AGG | + | chr2.3:17634483-17634502 | None:intergenic | 40.0% | |
GAAGAGAAAACGAAGCGAAA+AGG | - | chr2.3:17634049-17634068 | MS.gene99779:CDS | 40.0% | |
GTAGATCCATCAATCATACG+TGG | + | chr2.3:17636905-17636924 | None:intergenic | 40.0% | |
GTGTATGTGAATTTCAGTGC+AGG | - | chr2.3:17635336-17635355 | MS.gene99779:intron | 40.0% | |
TCTTATCCTTCCATCCCAAA+AGG | + | chr2.3:17634133-17634152 | None:intergenic | 40.0% | |
TGAAAATGTCAAAAGAGGGC+GGG | + | chr2.3:17635667-17635686 | None:intergenic | 40.0% | |
TGAGAATGAAGTCGAGGTTA+AGG | - | chr2.3:17634160-17634179 | MS.gene99779:intron | 40.0% | |
TGCAAATTCAGACACAAACC+TGG | + | chr2.3:17636298-17636317 | None:intergenic | 40.0% | |
TGGAGGAATTGAAGCTTACT+GGG | - | chr2.3:17635625-17635644 | MS.gene99779:intron | 40.0% | |
TTCTTTGCTAACATTGCCGA+TGG | - | chr2.3:17636524-17636543 | MS.gene99779:intron | 40.0% | |
TTGCAGAAGAAGAAAAAGGC+TGG | - | chr2.3:17637509-17637528 | MS.gene99779:CDS | 40.0% | |
! | ATTTTATCAAGGCTTCCTCG+GGG | + | chr2.3:17637177-17637196 | None:intergenic | 40.0% |
! | CATTTTATCAAGGCTTCCTC+GGG | + | chr2.3:17637178-17637197 | None:intergenic | 40.0% |
! | CGTATGATTGATGGATCTAC+AGG | - | chr2.3:17636905-17636924 | MS.gene99779:CDS | 40.0% |
! | GCTCTAGGCGTATTGTTTAT+AGG | - | chr2.3:17634234-17634253 | MS.gene99779:intron | 40.0% |
! | GGAGCAACATCTTCCTTTTT+GGG | + | chr2.3:17634092-17634111 | None:intergenic | 40.0% |
! | TGGAGCAACATCTTCCTTTT+TGG | + | chr2.3:17634093-17634112 | None:intergenic | 40.0% |
! | TGGTTTGGCGACACATATAA+TGG | + | chr2.3:17637372-17637391 | None:intergenic | 40.0% |
! | TTAGCCTTTCTATGGTCCTT+CGG | + | chr2.3:17636212-17636231 | None:intergenic | 40.0% |
! | TTTATGTGCGCACTTTTCTG+AGG | - | chr2.3:17635874-17635893 | MS.gene99779:intron | 40.0% |
!! | TACTTGTTTAGGTTGGTCCA+CGG | - | chr2.3:17637283-17637302 | MS.gene99779:intron | 40.0% |
!!! | CCAGATTTTTGAAACTCCGA+AGG | - | chr2.3:17636193-17636212 | MS.gene99779:intron | 40.0% |
!!! | CTTAGTTTGGTGGTGCTTTT+GGG | - | chr2.3:17635811-17635830 | MS.gene99779:intron | 40.0% |
!!! | CTTTGTTTTCCCTCCCAAAT+TGG | - | chr2.3:17635162-17635181 | MS.gene99779:intron | 40.0% |
!!! | GCGCACATGCATTTTTTTCT+TGG | - | chr2.3:17636106-17636125 | MS.gene99779:intron | 40.0% |
!!! | TCTTAGTTTGGTGGTGCTTT+TGG | - | chr2.3:17635810-17635829 | MS.gene99779:intron | 40.0% |
!!! | TTAGTTTGGTGGTGCTTTTG+GGG | - | chr2.3:17635812-17635831 | MS.gene99779:intron | 40.0% |
AACTCCGAAGGACCATAGAA+AGG | - | chr2.3:17636205-17636224 | MS.gene99779:intron | 45.0% | |
ACGCTACCACGTATGATTGA+TGG | - | chr2.3:17636896-17636915 | MS.gene99779:CDS | 45.0% | |
AGGTCAAAGCAAAGACAAGG+AGG | - | chr2.3:17637546-17637565 | MS.gene99779:CDS | 45.0% | |
ATGGTGCTTCACCTGTATTC+AGG | - | chr2.3:17634186-17634205 | MS.gene99779:intron | 45.0% | |
ATTGGATTCAAGCAGAACCG+TGG | + | chr2.3:17637303-17637322 | None:intergenic | 45.0% | |
ATTTAACAGACGGACCGTTG+GGG | + | chr2.3:17635397-17635416 | None:intergenic | 45.0% | |
CCGACATTTGATGTTGAACC+TGG | - | chr2.3:17634744-17634763 | MS.gene99779:intron | 45.0% | |
GAAGTCGAGGTTAAGGAGAA+TGG | - | chr2.3:17634167-17634186 | MS.gene99779:intron | 45.0% | |
GAGATGCTGTTGCAGGTATT+TGG | - | chr2.3:17635726-17635745 | MS.gene99779:intron | 45.0% | |
GCAAGACACAAGAGTCAGAT+GGG | + | chr2.3:17635091-17635110 | None:intergenic | 45.0% | |
GCTTCTGCCTCATTGCAAAA+AGG | - | chr2.3:17634771-17634790 | MS.gene99779:intron | 45.0% | |
GGCTGGAACATTTGCAAAGA+AGG | - | chr2.3:17637526-17637545 | MS.gene99779:CDS | 45.0% | |
GTTAAAGGAGATGCTGTTGC+AGG | - | chr2.3:17635719-17635738 | MS.gene99779:intron | 45.0% | |
TGCAAGACACAAGAGTCAGA+TGG | + | chr2.3:17635092-17635111 | None:intergenic | 45.0% | |
TGTGCACTGAAAAGCAGTGA+AGG | + | chr2.3:17635602-17635621 | None:intergenic | 45.0% | |
! | AATCATACGTGGTAGCGTCA+TGG | + | chr2.3:17636894-17636913 | None:intergenic | 45.0% |
! | CTGCACATAAAGGGCTTGTT+TGG | + | chr2.3:17634605-17634624 | None:intergenic | 45.0% |
! | CTTTTCAGTGCACACAATGG+AGG | - | chr2.3:17635608-17635627 | MS.gene99779:intron | 45.0% |
! | GGAAAGGCTTAGCCTTTCTA+TGG | + | chr2.3:17636220-17636239 | None:intergenic | 45.0% |
!! | ATATTCGGTGGCAGTTTTGG+AGG | - | chr2.3:17637327-17637346 | MS.gene99779:intron | 45.0% |
!! | CTGCTTTTCAGTGCACACAA+TGG | - | chr2.3:17635605-17635624 | MS.gene99779:intron | 45.0% |
AAGCGAAAAGGCTGAAGCTG+TGG | - | chr2.3:17634061-17634080 | MS.gene99779:CDS | 50.0% | |
AATGAGGCAGAAGCGATACC+AGG | + | chr2.3:17634765-17634784 | None:intergenic | 50.0% | |
CTCAACAAGCTCGTTCAAGG+TGG | + | chr2.3:17634830-17634849 | None:intergenic | 50.0% | |
GAGCTCAACAAGCTCGTTCA+AGG | + | chr2.3:17634833-17634852 | None:intergenic | 50.0% | |
GAGTCAGACAAATTACCCCG+AGG | - | chr2.3:17637159-17637178 | MS.gene99779:intron | 50.0% | |
TGGATGGCAAAATGCCCCAA+CGG | - | chr2.3:17635380-17635399 | MS.gene99779:CDS | 50.0% | |
! | AGACCAGTGAGGACCCTTTT+GGG | - | chr2.3:17634116-17634135 | MS.gene99779:CDS | 50.0% |
AGCTGTGGCTGTGCCCAAAA+AGG | - | chr2.3:17634076-17634095 | MS.gene99779:CDS | 55.0% | |
CATCCCAAAAGGGTCCTCAC+TGG | + | chr2.3:17634122-17634141 | None:intergenic | 55.0% | |
CTCATCAGGCTCCAGAGGAT+TGG | + | chr2.3:17637588-17637607 | None:intergenic | 55.0% | |
GCAAACTCATCAGGCTCCAG+AGG | + | chr2.3:17637593-17637612 | None:intergenic | 55.0% | |
GCATGAGATGGCCAATCCTC+TGG | - | chr2.3:17637574-17637593 | MS.gene99779:CDS | 55.0% | |
TTGCTCCAGAGAGACCAGTG+AGG | - | chr2.3:17634105-17634124 | MS.gene99779:CDS | 55.0% | |
! | AAAGAGGGCGGGAGCCTTTT+AGG | + | chr2.3:17635656-17635675 | None:intergenic | 55.0% |
! | GAGACCAGTGAGGACCCTTT+TGG | - | chr2.3:17634115-17634134 | MS.gene99779:CDS | 55.0% |
!! | CAGTGAGGACCCTTTTGGGA+TGG | - | chr2.3:17634120-17634139 | MS.gene99779:CDS | 55.0% |
!!! | GAGGACCCTTTTGGGATGGA+AGG | - | chr2.3:17634124-17634143 | MS.gene99779:CDS | 55.0% |
! | AGGGTCCTCACTGGTCTCTC+TGG | + | chr2.3:17634113-17634132 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 17634044 | 17637631 | 17634044 | ID=MS.gene99779 |
chr2.3 | mRNA | 17634044 | 17637631 | 17634044 | ID=MS.gene99779.t1;Parent=MS.gene99779 |
chr2.3 | exon | 17637420 | 17637631 | 17637420 | ID=MS.gene99779.t1.exon1;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17637420 | 17637631 | 17637420 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
chr2.3 | exon | 17636793 | 17636934 | 17636793 | ID=MS.gene99779.t1.exon2;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17636793 | 17636934 | 17636793 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
chr2.3 | exon | 17636244 | 17636322 | 17636244 | ID=MS.gene99779.t1.exon3;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17636244 | 17636322 | 17636244 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
chr2.3 | exon | 17635935 | 17636059 | 17635935 | ID=MS.gene99779.t1.exon4;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17635935 | 17636059 | 17635935 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
chr2.3 | exon | 17635377 | 17635478 | 17635377 | ID=MS.gene99779.t1.exon5;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17635377 | 17635478 | 17635377 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
chr2.3 | exon | 17634466 | 17634534 | 17634466 | ID=MS.gene99779.t1.exon6;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17634466 | 17634534 | 17634466 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
chr2.3 | exon | 17634283 | 17634381 | 17634283 | ID=MS.gene99779.t1.exon7;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17634283 | 17634381 | 17634283 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
chr2.3 | exon | 17634044 | 17634175 | 17634044 | ID=MS.gene99779.t1.exon8;Parent=MS.gene99779.t1 |
chr2.3 | CDS | 17634044 | 17634175 | 17634044 | ID=cds.MS.gene99779.t1;Parent=MS.gene99779.t1 |
Gene Sequence |
Protein sequence |