AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30933

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30933.t1 MTR_2g096340 100.000 154 0 0 1 154 1 154 4.16e-107 302
MS.gene30933.t1 MTR_2g096340 95.652 161 0 1 1 154 1 161 2.58e-104 295
MS.gene30933.t1 MTR_4g063060 95.364 151 6 1 4 154 3 152 5.31e-81 236
MS.gene30933.t1 MTR_7g023260 93.506 154 10 0 1 154 1 154 4.51e-71 211
MS.gene30933.t1 MTR_4g007840 94.595 37 2 0 118 154 36 72 2.49e-18 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30933.t1 AT3G55280 87.662 154 19 0 1 154 1 154 1.82e-71 212
MS.gene30933.t1 AT3G55280 87.662 154 19 0 1 154 1 154 1.82e-71 212
MS.gene30933.t1 AT2G39460 87.662 154 19 0 1 154 1 154 2.93e-68 204
MS.gene30933.t1 AT2G39460 87.662 154 19 0 1 154 1 154 2.93e-68 204
MS.gene30933.t1 AT3G55280 93.220 118 8 0 37 154 31 148 4.43e-67 201

Find 39 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAGATTGGGATTATTTA+AGG 0.136899 2.2:-5640966 None:intergenic
CTTCTTTGCCTTCTTCTTGA+TGG 0.213233 2.2:+5641485 None:intergenic
GCACTAATCCGAGGGTATTT+TGG 0.229197 2.2:+5641408 None:intergenic
GATCAAGGTGTTAACTTTCT+TGG 0.259114 2.2:+5641218 None:intergenic
CAACCTTACATAGGCCTTCT+TGG 0.259824 2.2:+5641019 None:intergenic
GAAGAAAATGTACGACATTC+AGG 0.310259 2.2:-5641241 MS.gene30933:CDS
GCTTTCAAGGCCTGTGCCTT+TGG 0.317092 2.2:+5641534 None:intergenic
CTATCCCTAGATAAAGTCTT+TGG 0.341250 2.2:+5641435 None:intergenic
CACTGCTTTCGCAGCTTTCA+AGG 0.343655 2.2:+5641521 None:intergenic
ACAGGCCAAAGACTTTATCT+AGG 0.384705 2.2:-5641440 MS.gene30933:CDS
GACACCTGATTATGATGCTT+TGG 0.412386 2.2:-5640997 MS.gene30933:CDS
TTGGATGTTGCAAACAAGAT+TGG 0.413392 2.2:-5640978 MS.gene30933:CDS
TGGATGTTGCAAACAAGATT+GGG 0.427718 2.2:-5640977 MS.gene30933:CDS
ATAGGCCTTCTTGGTGCCAT+CGG 0.428001 2.2:+5641028 None:intergenic
AGAAGAAGGCAAAGAAGATC+AGG 0.439428 2.2:-5641479 MS.gene30933:CDS
CAAGGCCTGTGCCTTTGGAT+CGG 0.452797 2.2:+5641539 None:intergenic
ACATCCAAAGCATCATAATC+AGG 0.461568 2.2:+5640993 None:intergenic
GCTGCGAAAGCAGTGAAGTC+AGG 0.467790 2.2:-5641513 MS.gene30933:CDS
GATTCAATGGCTCCACCAAA+AGG 0.493121 2.2:-5643744 None:intergenic
TAGGCCTTCTTGGTGCCATC+GGG 0.494781 2.2:+5641029 None:intergenic
TAATGATCAAGTTTGTTCCT+TGG 0.498760 2.2:+5641381 None:intergenic
AGAAAGTTAACACCTTGATC+AGG 0.514403 2.2:-5641215 MS.gene30933:intron
GATTGAAGACAACAACACTT+TGG 0.518542 2.2:-5641313 MS.gene30933:CDS
CAAAGACTTTATCTAGGGAT+AGG 0.519733 2.2:-5641434 MS.gene30933:CDS
CCTAAAGGCTTACCTGATCA+AGG 0.532987 2.2:+5641203 None:intergenic
CAGGCCCGATGGCACCAAGA+AGG 0.551305 2.2:-5641033 MS.gene30933:CDS
GCACCAAGAAGGCCTATGTA+AGG 0.556146 2.2:-5641022 MS.gene30933:CDS
AGGCACTGCCATCAAGAAGA+AGG 0.565573 2.2:-5641493 MS.gene30933:CDS
CAGGCCAAAGACTTTATCTA+GGG 0.565675 2.2:-5641439 MS.gene30933:CDS
GAAGACCGATCCAAAGGCAC+AGG 0.567558 2.2:-5641544 MS.gene30933:CDS
TAGATAAAGTCTTTGGCCTG+TGG 0.590574 2.2:+5641442 None:intergenic
GGACAACTGTTACATTCCAC+AGG 0.605601 2.2:-5641458 MS.gene30933:CDS
TGCAAAGAAGACCGATCCAA+AGG 0.612710 2.2:-5641550 MS.gene30933:CDS
ATAGGAATCCAAAATACCCT+CGG 0.629797 2.2:-5641416 MS.gene30933:CDS
ATCAGGTGTCAACCTTACAT+AGG 0.633043 2.2:+5641010 None:intergenic
ATTGCTGACTCAGTTGTGAG+CGG 0.651573 2.2:+5641342 None:intergenic
TTGGTGTAGCACTAATCCGA+GGG 0.658734 2.2:+5641400 None:intergenic
CTTGGTGTAGCACTAATCCG+AGG 0.662347 2.2:+5641399 None:intergenic
CTCGGATTAGTGCTACACCA+AGG 0.713270 2.2:-5641398 MS.gene30933:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTAATATTTATTTTTTGA+AGG - chr2.2:5642005-5642024 MS.gene30933:intron 10.0%
!!! TATTTTTCCTTTTTTTTAAA+AGG + chr2.2:5642124-5642143 None:intergenic 10.0%
!!! AGTAGAACTTAAAATTTTAT+AGG - chr2.2:5641396-5641415 MS.gene30933:CDS 15.0%
!!! CATATTTCCTTTTAAAAAAA+AGG - chr2.2:5642114-5642133 MS.gene30933:intron 15.0%
!!! TTATTTTGGTTTTGTTAAAA+TGG - chr2.2:5641768-5641787 MS.gene30933:intron 15.0%
!! ATAATAAAGAAATGAGAATG+CGG + chr2.2:5641465-5641484 None:intergenic 20.0%
!! CTCATGTTATTATTTACAAT+GGG + chr2.2:5643602-5643621 None:intergenic 20.0%
!! TCTCATGTTATTATTTACAA+TGG + chr2.2:5643603-5643622 None:intergenic 20.0%
!! TCTTCTAACCTAAAAAAATA+GGG - chr2.2:5642198-5642217 MS.gene30933:intron 20.0%
!!! AGCTATTTTGTATACATAAA+AGG + chr2.2:5643065-5643084 None:intergenic 20.0%
!!! GATTATATAACAATTTTAGC+TGG + chr2.2:5641192-5641211 None:intergenic 20.0%
!!! TTTTGTTGAATAGAAGATTT+AGG - chr2.2:5642763-5642782 MS.gene30933:intron 20.0%
!!! TTTTTCCTTTTTCTTTTTGT+AGG - chr2.2:5643127-5643146 MS.gene30933:intron 20.0%
! AAACTGCTTTACAATAATGT+GGG + chr2.2:5643632-5643651 None:intergenic 25.0%
! AAGAAATAAAACTACAAGTC+TGG - chr2.2:5642151-5642170 MS.gene30933:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr2.2:5643038-5643057 MS.gene30933:intron 25.0%
! AGAGAATAATTATTGCTATG+TGG + chr2.2:5642234-5642253 None:intergenic 25.0%
! ATAAAAAGATCACAACCTAA+AGG + chr2.2:5643521-5643540 None:intergenic 25.0%
! CTCTTCTAACCTAAAAAAAT+AGG - chr2.2:5642197-5642216 MS.gene30933:intron 25.0%
! TAAACTGCTTTACAATAATG+TGG + chr2.2:5643633-5643652 None:intergenic 25.0%
! TAATAAAGAAATGAGAATGC+GGG + chr2.2:5641464-5641483 None:intergenic 25.0%
!! AATATGTAAGACAGAAGTAT+AGG + chr2.2:5642100-5642119 None:intergenic 25.0%
!! AGTACTTATGATGTTCTTTT+TGG - chr2.2:5642392-5642411 MS.gene30933:intron 25.0%
!! TAGATAGATGAAATACCTTT+TGG + chr2.2:5640980-5640999 None:intergenic 25.0%
!! TATACTCTATCTAATTTGTG+CGG - chr2.2:5642436-5642455 MS.gene30933:intron 25.0%
!!! GTTTTGATTAAAAAAGTTGC+TGG - chr2.2:5641727-5641746 MS.gene30933:intron 25.0%
!!! TTTAGGTTGTGATCTTTTTA+TGG - chr2.2:5643520-5643539 MS.gene30933:intron 25.0%
AGCTGACAAAAAGAAAATCA+AGG - chr2.2:5643435-5643454 MS.gene30933:intron 30.0%
ATAAGCTATTCTTGTGCAAA+TGG + chr2.2:5642977-5642996 None:intergenic 30.0%
ATCATATATCCCTTCACAAT+AGG + chr2.2:5643567-5643586 None:intergenic 30.0%
ATCTCCATGATTATTGCTTT+CGG - chr2.2:5641806-5641825 MS.gene30933:intron 30.0%
ATGAAAACAGATGCAGAAAT+TGG + chr2.2:5641055-5641074 None:intergenic 30.0%
CATCACCTACAAAAAGAAAA+AGG + chr2.2:5643135-5643154 None:intergenic 30.0%
TAAGCTATTCTTGTGCAAAT+GGG + chr2.2:5642976-5642995 None:intergenic 30.0%
TAGAATTCAATCAGTGGTAA+TGG + chr2.2:5642264-5642283 None:intergenic 30.0%
TATACATAAAAGGTCCTGTT+TGG + chr2.2:5643055-5643074 None:intergenic 30.0%
TCATATATCCCTTCACAATA+GGG + chr2.2:5643566-5643585 None:intergenic 30.0%
! AATGTCGTACATTTTCTTCA+CGG + chr2.2:5643464-5643483 None:intergenic 30.0%
! ATACGATACTTCACCATTTT+TGG + chr2.2:5641850-5641869 None:intergenic 30.0%
! ATAGATGAAATACCTTTTGG+TGG + chr2.2:5640977-5640996 None:intergenic 30.0%
! CTTATGATGTTCTTTTTGGA+TGG - chr2.2:5642396-5642415 MS.gene30933:intron 30.0%
! CTTTTTCTTTTTGTAGGTGA+TGG - chr2.2:5643133-5643152 MS.gene30933:intron 30.0%
! TAATGATCAAGTTTGTTCCT+TGG + chr2.2:5643328-5643347 None:intergenic 30.0%
!! GTTGTTTTCAGAAGCAATTT+TGG + chr2.2:5641326-5641345 None:intergenic 30.0%
!! TAGAAGATTTAGGACCTTTT+TGG - chr2.2:5642773-5642792 MS.gene30933:intron 30.0%
!!! ACGAGAAACCCTATTTTTTT+AGG + chr2.2:5642209-5642228 None:intergenic 30.0%
!!! ATTTGTTTTGTGAGACTGTT+TGG - chr2.2:5642824-5642843 MS.gene30933:intron 30.0%
!!! TGATTTGCTTGGACTTATTT+TGG - chr2.2:5641754-5641773 MS.gene30933:intron 30.0%
!!! TTTGTTTTGTGAGACTGTTT+GGG - chr2.2:5642825-5642844 MS.gene30933:intron 30.0%
AAAAAATGACCGATACGTGT+CGG - chr2.2:5642029-5642048 MS.gene30933:intron 35.0%
ACAGAGTAGAATTCAATCAG+TGG + chr2.2:5642270-5642289 None:intergenic 35.0%
AGAAAGTTAACACCTTGATC+AGG - chr2.2:5643491-5643510 MS.gene30933:intron 35.0%
ATAGGAATCCAAAATACCCT+CGG - chr2.2:5643290-5643309 MS.gene30933:intron 35.0%
CAAAGACTTTATCTAGGGAT+AGG - chr2.2:5643272-5643291 MS.gene30933:intron 35.0%
CTATCCCTAGATAAAGTCTT+TGG + chr2.2:5643274-5643293 None:intergenic 35.0%
CTCCATGATTATTGCTTTCA+AGG + chr2.2:5641539-5641558 None:intergenic 35.0%
GAAGAAAATGTACGACATTC+AGG - chr2.2:5643465-5643484 MS.gene30933:intron 35.0%
GACCTTGAAAGCAATAATCA+TGG - chr2.2:5641534-5641553 MS.gene30933:CDS 35.0%
GATACGATACGATACCAATA+CGG + chr2.2:5642639-5642658 None:intergenic 35.0%
GATTGAAGACAACAACACTT+TGG - chr2.2:5643393-5643412 MS.gene30933:intron 35.0%
TCAAAATTCCCGATACGATA+CGG + chr2.2:5642600-5642619 None:intergenic 35.0%
TGAAAGAAGCCAATCCAAAA+AGG + chr2.2:5642790-5642809 None:intergenic 35.0%
TGGATGTTGCAAACAAGATT+GGG - chr2.2:5643729-5643748 MS.gene30933:intron 35.0%
TTGGATGTTGCAAACAAGAT+TGG - chr2.2:5643728-5643747 MS.gene30933:intron 35.0%
! AAATGAAGCATCCAGAGAAA+TGG + chr2.2:5642714-5642733 None:intergenic 35.0%
! AACTTTGCATGTTTTCTTGC+AGG - chr2.2:5643654-5643673 MS.gene30933:intron 35.0%
! AATGAAGCATCCAGAGAAAT+GGG + chr2.2:5642713-5642732 None:intergenic 35.0%
! ACATCCAAAGCATCATAATC+AGG + chr2.2:5643716-5643735 None:intergenic 35.0%
! AGACTGTTTGGGAAAAGTTT+TGG - chr2.2:5642836-5642855 MS.gene30933:intron 35.0%
! CGAGTTTCTGGATTAACTAT+TGG - chr2.2:5641111-5641130 MS.gene30933:intron 35.0%
! GACTGTTTGGGAAAAGTTTT+GGG - chr2.2:5642837-5642856 MS.gene30933:intron 35.0%
! GATCAAGGTGTTAACTTTCT+TGG + chr2.2:5643491-5643510 None:intergenic 35.0%
! GTATTGGTATCGTATCGTAT+CGG - chr2.2:5642638-5642657 MS.gene30933:intron 35.0%
!! GATTTAGGACCTTTTTGGAT+TGG - chr2.2:5642778-5642797 MS.gene30933:intron 35.0%
!! TCTGGATGCTTCATTTTTCT+AGG - chr2.2:5642718-5642737 MS.gene30933:intron 35.0%
!!! CTTCACCATTTTTGGAGTAT+CGG + chr2.2:5641842-5641861 None:intergenic 35.0%
!!! TTCACCATTTTTGGAGTATC+GGG + chr2.2:5641841-5641860 None:intergenic 35.0%
AAACAATGACCGATACGTGT+CGG - chr2.2:5641946-5641965 MS.gene30933:intron 40.0%
ACAGGCCAAAGACTTTATCT+AGG - chr2.2:5643266-5643285 MS.gene30933:intron 40.0%
AGAAGAAGGCAAAGAAGATC+AGG - chr2.2:5643227-5643246 MS.gene30933:intron 40.0%
AGAGCCGAAAGCAATAATCA+TGG + chr2.2:5641813-5641832 None:intergenic 40.0%
ATCAGGTGTCAACCTTACAT+AGG + chr2.2:5643699-5643718 None:intergenic 40.0%
ATGGCACACTGTTATGATCA+CGG - chr2.2:5643539-5643558 MS.gene30933:intron 40.0%
ATGTTTCCACGAGTTACGTT+GGG + chr2.2:5642916-5642935 None:intergenic 40.0%
CAGGCCAAAGACTTTATCTA+GGG - chr2.2:5643267-5643286 MS.gene30933:intron 40.0%
CAGTCTCACAAAACAAATGC+CGG + chr2.2:5642822-5642841 None:intergenic 40.0%
CTTCTTTGCCTTCTTCTTGA+TGG + chr2.2:5643224-5643243 None:intergenic 40.0%
GACACCTGATTATGATGCTT+TGG - chr2.2:5643709-5643728 MS.gene30933:intron 40.0%
GCGGGTTTAGCAAACAAATA+AGG + chr2.2:5641446-5641465 None:intergenic 40.0%
GCTTCTTTCAGCTTATCTAC+CGG - chr2.2:5642800-5642819 MS.gene30933:intron 40.0%
TACTTCTCCGATATGCGAAT+CGG + chr2.2:5641979-5641998 None:intergenic 40.0%
TAGATAAAGTCTTTGGCCTG+TGG + chr2.2:5643267-5643286 None:intergenic 40.0%
TTAGAGTCATCCCATTTCTC+TGG - chr2.2:5642700-5642719 MS.gene30933:intron 40.0%
TTGCTGCATGAAATGTGAGT+AGG - chr2.2:5643099-5643118 MS.gene30933:intron 40.0%
! ATACTTCCCGATTCGCATAT+CGG - chr2.2:5641969-5641988 MS.gene30933:intron 40.0%
! TACGCGTATCGGAAAAGTAT+CGG - chr2.2:5641900-5641919 MS.gene30933:intron 40.0%
! TACTTTTCCGATACGCGTAT+CGG + chr2.2:5641899-5641918 None:intergenic 40.0%
! TTCGCATATCGGAGAAGTAT+CGG - chr2.2:5641980-5641999 MS.gene30933:intron 40.0%
!! TTGCTGGAACATGATTTGCT+TGG - chr2.2:5641743-5641762 MS.gene30933:intron 40.0%
!!! TCACCATTTTTGGAGTATCG+GGG + chr2.2:5641840-5641859 None:intergenic 40.0%
AAGCCCCGATACTCCAAAAA+TGG - chr2.2:5641834-5641853 MS.gene30933:intron 45.0%
ACGATACCAATACGGCGATA+CGG + chr2.2:5642631-5642650 None:intergenic 45.0%
ACTTCTCCGATATGCGAATC+GGG + chr2.2:5641978-5641997 None:intergenic 45.0%
ATCGGTATCGTGTCAGGTAT+CGG - chr2.2:5642656-5642675 MS.gene30933:intron 45.0%
CAACCTTACATAGGCCTTCT+TGG + chr2.2:5643690-5643709 None:intergenic 45.0%
CCTAAAGGCTTACCTGATCA+AGG + chr2.2:5643506-5643525 None:intergenic 45.0%
CCTTGATCAGGTAAGCCTTT+AGG - chr2.2:5643503-5643522 MS.gene30933:intron 45.0%
GATGTTTCCACGAGTTACGT+TGG + chr2.2:5642917-5642936 None:intergenic 45.0%
GGACAACTGTTACATTCCAC+AGG - chr2.2:5643248-5643267 MS.gene30933:intron 45.0%
GTATCGAAGCCGTATCGTAT+CGG - chr2.2:5642588-5642607 MS.gene30933:intron 45.0%
TAGTCGTATCCGACACGTAT+CGG + chr2.2:5642041-5642060 None:intergenic 45.0%
TATCGAAGCCGTATCGTATC+GGG - chr2.2:5642589-5642608 MS.gene30933:intron 45.0%
TGCAAAGAAGACCGATCCAA+AGG - chr2.2:5643156-5643175 MS.gene30933:intron 45.0%
TGGCACACTGTTATGATCAC+GGG - chr2.2:5643540-5643559 MS.gene30933:intron 45.0%
TGTTTCCACGAGTTACGTTG+GGG + chr2.2:5642915-5642934 None:intergenic 45.0%
TTGGTGTAGCACTAATCCGA+GGG + chr2.2:5643309-5643328 None:intergenic 45.0%
! ACTTTTCCGATACGCGTATC+GGG + chr2.2:5641898-5641917 None:intergenic 45.0%
! ATTTTCCCGTATCGCCGTAT+TGG - chr2.2:5642622-5642641 MS.gene30933:intron 45.0%
! TATCGTATCGGTATCGTGTC+AGG - chr2.2:5642650-5642669 MS.gene30933:intron 45.0%
!! ATTGCTGACTCAGTTGTGAG+CGG + chr2.2:5643367-5643386 None:intergenic 45.0%
!! TCGCATATCGGAGAAGTATC+GGG - chr2.2:5641981-5642000 MS.gene30933:intron 45.0%
!!! GCACTAATCCGAGGGTATTT+TGG + chr2.2:5643301-5643320 None:intergenic 45.0%
ATACGCGTATCGGGACGTAT+CGG + chr2.2:5641889-5641908 None:intergenic 50.0%
ATACGTCCCGATACGCGTAT+CGG - chr2.2:5641889-5641908 MS.gene30933:intron 50.0%
ATCACGGGCCCTATTGTGAA+GGG - chr2.2:5643555-5643574 MS.gene30933:intron 50.0%
CACTGCTTTCGCAGCTTTCA+AGG + chr2.2:5643188-5643207 None:intergenic 50.0%
CGATACCAATACGGCGATAC+GGG + chr2.2:5642630-5642649 None:intergenic 50.0%
GCACCAAGAAGGCCTATGTA+AGG - chr2.2:5643684-5643703 MS.gene30933:intron 50.0%
GTTTCCACGAGTTACGTTGG+GGG + chr2.2:5642914-5642933 None:intergenic 50.0%
TCAGTGCTTGCACGAGTTTC+TGG - chr2.2:5641099-5641118 MS.gene30933:intron 50.0%
TCGGTATCGTGTCAGGTATC+GGG - chr2.2:5642657-5642676 MS.gene30933:intron 50.0%
! AGGCACTGCCATCAAGAAGA+AGG - chr2.2:5643213-5643232 MS.gene30933:intron 50.0%
! ATGTTTTCTTGCAGGCCCGA+TGG - chr2.2:5643662-5643681 MS.gene30933:intron 50.0%
! CTTGGTGTAGCACTAATCCG+AGG + chr2.2:5643310-5643329 None:intergenic 50.0%
!! ATAGGCCTTCTTGGTGCCAT+CGG + chr2.2:5643681-5643700 None:intergenic 50.0%
!! CTCGGATTAGTGCTACACCA+AGG - chr2.2:5643308-5643327 MS.gene30933:intron 50.0%
!! GGGAAGTATCCGACACGTAT+CGG + chr2.2:5641958-5641977 None:intergenic 50.0%
AGTTCCCCCAACGTAACTCG+TGG - chr2.2:5642907-5642926 MS.gene30933:intron 55.0%
ATCGGGGCTTCGTAGGCTTT+CGG - chr2.2:5642674-5642693 MS.gene30933:intron 55.0%
CAAGGCCTGTGCCTTTGGAT+CGG + chr2.2:5643170-5643189 None:intergenic 55.0%
GATCACGGGCCCTATTGTGA+AGG - chr2.2:5643554-5643573 MS.gene30933:intron 55.0%
GCTGCGAAAGCAGTGAAGTC+AGG - chr2.2:5643193-5643212 MS.gene30933:intron 55.0%
GCTTTCAAGGCCTGTGCCTT+TGG + chr2.2:5643175-5643194 None:intergenic 55.0%
TACGCGTATCGGGACGTATC+GGG + chr2.2:5641888-5641907 None:intergenic 55.0%
! CGGTATCGTGTCAGGTATCG+GGG - chr2.2:5642658-5642677 MS.gene30933:intron 55.0%
! GAAGACCGATCCAAAGGCAC+AGG - chr2.2:5643162-5643181 MS.gene30933:intron 55.0%
! GTATCGGGGCGTATCGGTAT+CGG + chr2.2:5641873-5641892 None:intergenic 55.0%
!! TAGGCCTTCTTGGTGCCATC+GGG + chr2.2:5643680-5643699 None:intergenic 55.0%
ACGCGTATCGGGACGTATCG+GGG + chr2.2:5641887-5641906 None:intergenic 60.0%
!! GTCAGGTATCGGGGCTTCGT+AGG - chr2.2:5642667-5642686 MS.gene30933:intron 60.0%
CAGGCCCGATGGCACCAAGA+AGG - chr2.2:5643673-5643692 MS.gene30933:intron 65.0%
CGGGACGTATCGGGGCGTAT+CGG + chr2.2:5641879-5641898 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 5640968 5643760 5640968 ID=MS.gene30933
chr2.2 mRNA 5640968 5643760 5640968 ID=MS.gene30933.t1;Parent=MS.gene30933
chr2.2 exon 5643745 5643760 5643745 ID=MS.gene30933.t1.exon1;Parent=MS.gene30933.t1
chr2.2 CDS 5643745 5643760 5643745 ID=cds.MS.gene30933.t1;Parent=MS.gene30933.t1
chr2.2 exon 5641216 5641579 5641216 ID=MS.gene30933.t1.exon2;Parent=MS.gene30933.t1
chr2.2 CDS 5641216 5641579 5641216 ID=cds.MS.gene30933.t1;Parent=MS.gene30933.t1
chr2.2 exon 5640968 5641052 5640968 ID=MS.gene30933.t1.exon3;Parent=MS.gene30933.t1
chr2.2 CDS 5640968 5641052 5640968 ID=cds.MS.gene30933.t1;Parent=MS.gene30933.t1
Gene Sequence

>MS.gene30933

ATGGCTCCACCAAAAGGTATTTCATCTATCTATATCTCTCTTCTTTTTCAATAGTCGAAGATATGTTTTTGCTCTTTAATTTTTCCAATTTCTGCATCTGTTTTCATAATGTAACTGCTTCAGTACGAAAATCAGTGCTTGCACGAGTTTCTGGATTAACTATTGGTTTATCTGCATCTGATTTGATTCGAGAAGAAAATTCACTATTTGTATTTTTAATGCCAGCTAAAATTGTTATATAATCTCTTTTTTTTTACTAGTTAACTACTAAGAGCTGACTTATAACTTATGAAAAGCTGAAAAACAGTTTATGAAATTGTTCATAAGCTGTTTTCAGCTTTCTTTACTAAGTTCTCCAAAATTGCTTCTGAAAACAACGTATAGCTTATATGAAATCAATTTAGATCTTTTGCTATATAAATAGTTTTAGTAGAACTTAAAATTTTATAGGCTGCAAATAAGCTGTGTATCTGAACCTTATTTGTTTGCTAAACCCGCATTCTCATTTCTTTATTATTTTAACAGAGATTGAAATTTGATAATTGTCATTAGACTGTCTGAGTACTGACCTTGAAAGCAATAATCATGGAGATAAATCAAGTTCTTTTTTAATCAAAACAGCAAATTAACATATCATTCTCAACTCAAACATCTCAAGTTCACATATCACTAAAAGTTGTTTTAAGTGATTATGTGAAATAATACATTTTGATGATTGAACTTGAGATGTTTGAGTTTAAAATGATATGTTAATTTGCTGTTTTGATTAAAAAAGTTGCTGGAACATGATTTGCTTGGACTTATTTTGGTTTTGTTAAAATGGAGACGAACTTGATTTATCTCCATGATTATTGCTTTCGGCTCTGAAGCCCCGATACTCCAAAAATGGTGAAGTATCGTATCCGATACCGATACGCCCCGATACGTCCCGATACGCGTATCGGAAAAGTATCGGCAATTAATATTTATTTTTTTGAAAAACAATGACCGATACGTGTCGGATACTTCCCGATTCGCATATCGGAGAAGTATCGGGCAGTTAATATTTATTTTTTGAAGGAAAAAAATGACCGATACGTGTCGGATACGACTAATTTGTACTCTGACACAACTTACTTATACTCTGACACCTATACTTCTGTCTTACATATTTCCTTTTAAAAAAAAGGAAAAATAAAATAATAAGAAATAAAACTACAAGTCTGGCAGCGCTATCAAAATCATATTGTCTCTTCTAACCTAAAAAAATAGGGTTTCTCGTCACCACATAGCAATAATTATTCTCTCTTCTAACCATTACCACTGATTGAATTCTACTCTGTTTCTCTTCTTTCTAATGTTACGTTTCTTCTGCTGTTTGTTTTCGATATAAATTAGTGTTAATTGTTAAGTAGTCAACATTAGACAAAGATGTTTTTTTTTATAGTACTTATGATGTTCTTTTTGGATGGTACTAATGATGTTTAGCTATACTCTATCTAATTTGTGCGGAAAAAATATGTAATTGTCACTTGTTTTGAGCATTTTCATTAATGTGAATGTTTGTTTATTATCATTTTTAGTTATGTTTATACATTGTACACTGATACTATTAATTTTAAATTTAATTTTTTTAATAACGTATCGAAGCCGTATCGTATCGGGAATTTTGAAAATTTTCCCGTATCGCCGTATTGGTATCGTATCGTATCGGTATCGTGTCAGGTATCGGGGCTTCGTAGGCTTTCGGTGTTTAGAGTCATCCCATTTCTCTGGATGCTTCATTTTTCTAGGATATATGAAATTAATGATATCTTTTTGTTGAATAGAAGATTTAGGACCTTTTTGGATTGGCTTCTTTCAGCTTATCTACCGGCATTTGTTTTGTGAGACTGTTTGGGAAAAGTTTTGGGAACAGCTTATGACTTTTTTCATAAGCATTTTTCAACTTGTTTTTATTAGTTCCCCCAACGTAACTCGTGGAAACATCTTATATCATATACAAACACAGTTTTAACTTTATTTTCCCATTTGCACAAGAATAGCTTATGTAAGCGCTTATACATAAACACGTGTGTGCTATAAGCTGCAAATAAGTTGTTTATCCAAACAGGACCTTTTATGTATACAAAATAGCTAGTTCTTAGATTTTTTGCTGCATGAAATGTGAGTAGGTCATCTTTTTCCTTTTTCTTTTTGTAGGTGATGGTGCAAAGAAGACCGATCCAAAGGCACAGGCCTTGAAAGCTGCGAAAGCAGTGAAGTCAGGCACTGCCATCAAGAAGAAGGCAAAGAAGATCAGGACAACTGTTACATTCCACAGGCCAAAGACTTTATCTAGGGATAGGAATCCAAAATACCCTCGGATTAGTGCTACACCAAGGAACAAACTTGATCATTATCAGATTTTGAAGTATCCGCTCACAACTGAGTCAGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACTTGCGAGCTGACAAAAAGAAAATCAAGGATGCCGTGAAGAAAATGTACGACATTCAGGCCAAGAAAGTTAACACCTTGATCAGGTAAGCCTTTAGGTTGTGATCTTTTTATGGCACACTGTTATGATCACGGGCCCTATTGTGAAGGGATATATGATACATAATATAAACCCATTGTAAATAATAACATGAGATTGAAACCCACATTATTGTAAAGCAGTTTAAAACTTTGCATGTTTTCTTGCAGGCCCGATGGCACCAAGAAGGCCTATGTAAGGTTGACACCTGATTATGATGCTTTGGATGTTGCAAACAAGATTGGGATTATTTAA
Protein sequence

>MS.gene30933.t1

MAPPKGDGAKKTDPKAQALKAAKAVKSGTAIKKKAKKIRTTVTFHRPKTLSRDRNPKYPRISATPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII