Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000480.t1 | XP_003623309.1 | 98.4 | 319 | 1 | 1 | 1 | 319 | 1 | 315 | 8.80E-180 | 639.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000480.t1 | Q9C928 | 77.5 | 320 | 69 | 2 | 1 | 319 | 1 | 318 | 7.1e-146 | 518.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000480.t1 | G7KSA6 | 98.4 | 319 | 1 | 1 | 1 | 319 | 1 | 315 | 6.3e-180 | 639.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000480.t1 | MTR_7g069430 | 98.433 | 319 | 1 | 1 | 1 | 319 | 1 | 315 | 0.0 | 644 |
| MS.gene000480.t1 | MTR_1g012990 | 97.806 | 319 | 5 | 1 | 1 | 319 | 1 | 317 | 0.0 | 643 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000480.t1 | AT3G15460 | 79.439 | 321 | 57 | 4 | 1 | 319 | 1 | 314 | 0.0 | 520 |
| MS.gene000480.t1 | AT1G52930 | 77.500 | 320 | 69 | 2 | 1 | 319 | 1 | 318 | 0.0 | 503 |
Find 67 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTGTTGATGACCATATA+TGG | 0.264455 | 7.3:+35732310 | MS.gene000480:CDS |
| GCTCTAGGCGTATTGTTTAC+AGG | 0.279178 | 7.3:+35730214 | MS.gene000480:CDS |
| AAAATATTCGGTGGCAGTTT+TGG | 0.285272 | 7.3:+35733399 | MS.gene000480:CDS |
| GTTGAAGGAGATGCTGTTAC+AGG | 0.303915 | 7.3:+35731759 | MS.gene000480:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 7.3:+35731664 | MS.gene000480:CDS |
| TTGAATCCTATTAAAATATT+CGG | 0.310714 | 7.3:+35733387 | MS.gene000480:CDS |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 7.3:+35730095 | MS.gene000480:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 7.3:-35732323 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.342543 | 7.3:+35730166 | MS.gene000480:CDS |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 7.3:-35730177 | None:intergenic |
| AAACACAAACCTGGTAATTT+CGG | 0.365107 | 7.3:-35732335 | None:intergenic |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 7.3:+35730753 | MS.gene000480:CDS |
| CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 7.3:+35731679 | MS.gene000480:CDS |
| GAAATTGAGGCTAAGGATAA+TGG | 0.372435 | 7.3:+35730147 | MS.gene000480:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 7.3:-35730090 | None:intergenic |
| AATTTAACAGACGGGCCGTT+GGG | 0.387269 | 7.3:-35731440 | None:intergenic |
| AGCTGAGGCCGTGCCCAAAA+AGG | 0.387341 | 7.3:+35730056 | MS.gene000480:CDS |
| CCGACATTTGATGTTGAACT+TGG | 0.401652 | 7.3:+35730726 | MS.gene000480:CDS |
| AGCTTTGCAGAAGAAGAAAA+AGG | 0.403828 | 7.3:+35733576 | MS.gene000480:CDS |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 7.3:+35730185 | MS.gene000480:CDS |
| CACATATCTGCAAACTCATC+AGG | 0.414305 | 7.3:-35733670 | None:intergenic |
| GGCTGGAACGTTTGCAAAGA+AGG | 0.416450 | 7.3:+35733597 | MS.gene000480:CDS |
| GAGCTCAACAAGCTCATTCA+AGG | 0.439282 | 7.3:-35730812 | None:intergenic |
| TTAGCCTTTCTGTGGTCCTT+CGG | 0.446280 | 7.3:-35732258 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 7.3:-35730110 | None:intergenic |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 7.3:+35731405 | MS.gene000480:CDS |
| AGTGGATTCTCATATAAAGT+TGG | 0.474374 | 7.3:-35733426 | None:intergenic |
| GTGGATTCTCATATAAAGTT+GGG | 0.479309 | 7.3:-35733425 | None:intergenic |
| TGATAAAATGACATTGATTG+AGG | 0.479641 | 7.3:+35733264 | MS.gene000480:CDS |
| TGAGAATGAAATTGAGGCTA+AGG | 0.482199 | 7.3:+35730140 | MS.gene000480:CDS |
| GGTTGAATCGAAAGAAACTA+AGG | 0.485204 | 7.3:+35730783 | MS.gene000480:CDS |
| TTTGATGAAAATGTCAAAAG+AGG | 0.486922 | 7.3:-35731709 | None:intergenic |
| CTCATCAGGCTCAAGAGGAT+TGG | 0.499362 | 7.3:-35733656 | None:intergenic |
| AAATTTAACAGACGGGCCGT+TGG | 0.517299 | 7.3:-35731441 | None:intergenic |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 7.3:+35732326 | MS.gene000480:CDS |
| TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 7.3:+35731665 | MS.gene000480:CDS |
| TGCATACTGGAAATTGTTGA+AGG | 0.528673 | 7.3:+35731744 | MS.gene000480:CDS |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 7.3:-35730109 | None:intergenic |
| GAAGAGAAAGCGAAGTGAAA+AGG | 0.534401 | 7.3:+35730029 | MS.gene000480:CDS |
| GCAAACTCATCAGGCTCAAG+AGG | 0.543124 | 7.3:-35733661 | None:intergenic |
| TGATAATGAGAATGAAATTG+AGG | 0.547214 | 7.3:+35730134 | MS.gene000480:CDS |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 7.3:-35730099 | None:intergenic |
| ACTCTACGTGTCGCCAAACC+AGG | 0.562370 | 7.3:+35733446 | MS.gene000480:CDS |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 7.3:+35731409 | MS.gene000480:CDS |
| GGAAAGGCTTAGCCTTTCTG+TGG | 0.574310 | 7.3:-35732266 | None:intergenic |
| ATTTAACAGACGGGCCGTTG+GGG | 0.581078 | 7.3:-35731439 | None:intergenic |
| TGGTTTGGCGACACGTAGAG+TGG | 0.584267 | 7.3:-35733444 | None:intergenic |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 7.3:+35733633 | MS.gene000480:CDS |
| AATCCTATTAAAATATTCGG+TGG | 0.589712 | 7.3:+35733390 | MS.gene000480:CDS |
| AACACCGAAGGACCACAGAA+AGG | 0.602217 | 7.3:+35732254 | MS.gene000480:CDS |
| CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 7.3:+35733671 | MS.gene000480:CDS |
| CTACTTGTTAGGTTGGTCCA+CGG | 0.606891 | 7.3:+35733358 | MS.gene000480:intron |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 7.3:+35733614 | MS.gene000480:CDS |
| TGGATGGCAAAATGCCCCAA+CGG | 0.618112 | 7.3:+35731425 | MS.gene000480:CDS |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 7.3:-35733226 | None:intergenic |
| GTTGAATCGAAAGAAACTAA+GGG | 0.624547 | 7.3:+35730784 | MS.gene000480:CDS |
| AAGTGAAAAGGCTGAAGCTG+AGG | 0.628246 | 7.3:+35730041 | MS.gene000480:CDS |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.635761 | 7.3:+35731385 | MS.gene000480:intron |
| CTTTCCAGTGCACACAATGG+AGG | 0.635931 | 7.3:+35731648 | MS.gene000480:intron |
| CTGCTTTCCAGTGCACACAA+TGG | 0.638507 | 7.3:+35731645 | MS.gene000480:intron |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 7.3:+35733617 | MS.gene000480:CDS |
| ATAGGATTCAAGCAAAACCG+TGG | 0.641731 | 7.3:-35733375 | None:intergenic |
| CCAAGTTCAACATCAAATGT+CGG | 0.645758 | 7.3:-35730726 | None:intergenic |
| CTCAACAAGCTCATTCAAGG+TGG | 0.661049 | 7.3:-35730809 | None:intergenic |
| CCAGATATTTGAAACACCGA+AGG | 0.677611 | 7.3:+35732242 | MS.gene000480:intron |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 7.3:+35730085 | MS.gene000480:CDS |
| GAGTCAGACAAATTACCCCG+TGG | 0.753852 | 7.3:+35733235 | MS.gene000480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAATTAATGTCAAA+TGG | + | chr7.3:35730402-35730421 | MS.gene000480:intron | 10.0% |
| !!! | AAATATCAACATTTTTTTTT+AGG | - | chr7.3:35731043-35731062 | None:intergenic | 10.0% |
| !!! | AATATCAACATTTTTTTTTA+GGG | - | chr7.3:35731042-35731061 | None:intergenic | 10.0% |
| !!! | TAAATATTTTTTATGACATA+AGG | + | chr7.3:35730875-35730894 | MS.gene000480:intron | 10.0% |
| !!! | TTTGCTTATTTTATAATATA+TGG | + | chr7.3:35733030-35733049 | MS.gene000480:intron | 10.0% |
| !! | ATTGATCATAAACTTATTAT+AGG | + | chr7.3:35730701-35730720 | MS.gene000480:intron | 15.0% |
| !! | CATTATTTAAATTTATCTAC+TGG | - | chr7.3:35730558-35730577 | None:intergenic | 15.0% |
| !! | TAATAATTTAAACAAGATAG+AGG | + | chr7.3:35733059-35733078 | MS.gene000480:intron | 15.0% |
| !! | TTGAATCCTATTAAAATATT+CGG | + | chr7.3:35733387-35733406 | MS.gene000480:CDS | 15.0% |
| !!! | CTACACTTTAAAATTTAAAA+TGG | - | chr7.3:35731175-35731194 | None:intergenic | 15.0% |
| !!! | TCATAATATCATATTTCTAT+TGG | - | chr7.3:35732712-35732731 | None:intergenic | 15.0% |
| !! | AAATACATAGAAAACCAATT+TGG | - | chr7.3:35731225-35731244 | None:intergenic | 20.0% |
| !! | AAGTCTATAAATGTTATGTT+TGG | + | chr7.3:35732002-35732021 | MS.gene000480:intron | 20.0% |
| !! | AATACATAGAAAACCAATTT+GGG | - | chr7.3:35731224-35731243 | None:intergenic | 20.0% |
| !! | AATACTATATAATCATAGCA+AGG | - | chr7.3:35731529-35731548 | None:intergenic | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | - | chr7.3:35731452-35731471 | None:intergenic | 20.0% |
| !! | CTATGATTATATAGTATTCT+AGG | + | chr7.3:35731531-35731550 | MS.gene000480:intron | 20.0% |
| !! | TAAAAGAGAAACTAGTAAAA+TGG | - | chr7.3:35731619-35731638 | None:intergenic | 20.0% |
| !! | TAACTAAAAATTTAACAGAC+GGG | - | chr7.3:35731451-35731470 | None:intergenic | 20.0% |
| !! | TACTGAAAATAACTACATAT+TGG | + | chr7.3:35733517-35733536 | MS.gene000480:intron | 20.0% |
| !! | TTGAGTTATGTATTTGAAAA+GGG | + | chr7.3:35732115-35732134 | MS.gene000480:intron | 20.0% |
| !! | TTGCAAAAGATCTAAATAAT+TGG | + | chr7.3:35732362-35732381 | MS.gene000480:intron | 20.0% |
| !!! | AATTTTAATTGTGTAGAATG+CGG | + | chr7.3:35732042-35732061 | MS.gene000480:intron | 20.0% |
| !!! | AGTAAATGATTGTTTTACTA+TGG | + | chr7.3:35732791-35732810 | MS.gene000480:intron | 20.0% |
| !!! | CAGTTTACTTATTTTAAATC+TGG | + | chr7.3:35731248-35731267 | MS.gene000480:intron | 20.0% |
| !!! | GCTTATTTTATAATATATGG+AGG | + | chr7.3:35733033-35733052 | MS.gene000480:intron | 20.0% |
| !!! | GTTTAAACTTTAAAATCTGT+TGG | + | chr7.3:35732419-35732438 | MS.gene000480:intron | 20.0% |
| !!! | TGATATAGTATATAAGGTTT+TGG | - | chr7.3:35732764-35732783 | None:intergenic | 20.0% |
| !!! | TTGTTTATTTTGGTTATGTT+TGG | + | chr7.3:35730304-35730323 | MS.gene000480:intron | 20.0% |
| ! | AATCCTATTAAAATATTCGG+TGG | + | chr7.3:35733390-35733409 | MS.gene000480:CDS | 25.0% |
| ! | ACAAACAGATAGAATATTAC+CGG | - | chr7.3:35731477-35731496 | None:intergenic | 25.0% |
| ! | ACATCAGTTAAATGAATCTT+AGG | - | chr7.3:35733331-35733350 | None:intergenic | 25.0% |
| ! | AGTTAAGTTATTATGCTGTA+AGG | + | chr7.3:35730337-35730356 | MS.gene000480:intron | 25.0% |
| ! | CATCAACATATGTAACAAAA+TGG | - | chr7.3:35730999-35731018 | None:intergenic | 25.0% |
| ! | CTAATGCAATATGTTATTGT+TGG | + | chr7.3:35731067-35731086 | MS.gene000480:intron | 25.0% |
| ! | CTTGAGTTATGTATTTGAAA+AGG | + | chr7.3:35732114-35732133 | MS.gene000480:intron | 25.0% |
| ! | GAAAATTGACTGTTTGTTTA+TGG | + | chr7.3:35730959-35730978 | MS.gene000480:intron | 25.0% |
| ! | GGATACAGCAAAATATATTT+GGG | - | chr7.3:35730254-35730273 | None:intergenic | 25.0% |
| ! | GTTAAGTTATTATGCTGTAA+GGG | + | chr7.3:35730338-35730357 | MS.gene000480:intron | 25.0% |
| ! | TACTAAAAACAAATAAGCAC+TGG | + | chr7.3:35732464-35732483 | MS.gene000480:intron | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | - | chr7.3:35731522-35731541 | None:intergenic | 25.0% |
| ! | TATGACAATAGATCACAAAT+AGG | - | chr7.3:35731936-35731955 | None:intergenic | 25.0% |
| ! | TGAGTTATGTATTTGAAAAG+GGG | + | chr7.3:35732116-35732135 | MS.gene000480:intron | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | - | chr7.3:35731712-35731731 | None:intergenic | 25.0% |
| !! | AGTGTACATTGAGAATATTT+TGG | - | chr7.3:35733478-35733497 | None:intergenic | 25.0% |
| !! | ATACTTCTTCCTTTTATTGT+GGG | + | chr7.3:35730657-35730676 | MS.gene000480:intron | 25.0% |
| !! | TATACTTCTTCCTTTTATTG+TGG | + | chr7.3:35730656-35730675 | MS.gene000480:intron | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | + | chr7.3:35733264-35733283 | MS.gene000480:CDS | 25.0% |
| !! | TGATAATGAGAATGAAATTG+AGG | + | chr7.3:35730134-35730153 | MS.gene000480:CDS | 25.0% |
| !! | TGATGACTTTTATACTAATC+CGG | + | chr7.3:35732997-35733016 | MS.gene000480:intron | 25.0% |
| !! | TGTAATTATGCCAATTGTTT+TGG | + | chr7.3:35732496-35732515 | MS.gene000480:intron | 25.0% |
| !! | TTCACAATTTTCTGTAGTTT+TGG | + | chr7.3:35732083-35732102 | MS.gene000480:intron | 25.0% |
| !!! | AGTTTTGGATTCAAAAGTTA+AGG | + | chr7.3:35731810-35731829 | MS.gene000480:intron | 25.0% |
| !!! | ATAGAGGTATTATTTTATGC+TGG | + | chr7.3:35733075-35733094 | MS.gene000480:intron | 25.0% |
| !!! | ATTGTTTTACTATGGTTACA+TGG | + | chr7.3:35732799-35732818 | MS.gene000480:intron | 25.0% |
| !!! | ATTTTAATTGTGTAGAATGC+GGG | + | chr7.3:35732043-35732062 | MS.gene000480:intron | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | + | chr7.3:35731731-35731750 | MS.gene000480:CDS | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | - | chr7.3:35733264-35733283 | None:intergenic | 25.0% |
| !!! | GAGTTTGGATTTGTTTATTT+TGG | + | chr7.3:35730294-35730313 | MS.gene000480:intron | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | + | chr7.3:35731455-35731474 | MS.gene000480:CDS | 25.0% |
| !!! | TCTATCTGTTTGTTATCTTA+AGG | + | chr7.3:35731484-35731503 | MS.gene000480:intron | 25.0% |
| !!! | TTCGTCATGTTTATTTTTTG+AGG | + | chr7.3:35730843-35730862 | MS.gene000480:CDS | 25.0% |
| AAAAGATCTTTATCTCTGGA+TGG | + | chr7.3:35731409-35731428 | MS.gene000480:CDS | 30.0% | |
| AAACACAAACCTGGTAATTT+CGG | - | chr7.3:35732338-35732357 | None:intergenic | 30.0% | |
| AACTACAGAAAATTGTGAAC+AGG | - | chr7.3:35732082-35732101 | None:intergenic | 30.0% | |
| AACTCAAACTCGAGATTAAA+TGG | - | chr7.3:35731292-35731311 | None:intergenic | 30.0% | |
| AAGATGCTGAAAACAGTTTA+TGG | + | chr7.3:35730477-35730496 | MS.gene000480:intron | 30.0% | |
| ATAAGCAAAATTAAGTCCAC+CGG | - | chr7.3:35733019-35733038 | None:intergenic | 30.0% | |
| ATACTAAAGCCTGTTTGTAA+AGG | - | chr7.3:35732649-35732668 | None:intergenic | 30.0% | |
| CAAAAAGAAGAATGAAGAAC+TGG | - | chr7.3:35731566-35731585 | None:intergenic | 30.0% | |
| CGGATACAGCAAAATATATT+TGG | - | chr7.3:35730255-35730274 | None:intergenic | 30.0% | |
| CTGAAATTCACATACAAAGA+AGG | - | chr7.3:35731378-35731397 | None:intergenic | 30.0% | |
| CTTCGCTGATATAGTATATA+AGG | - | chr7.3:35732770-35732789 | None:intergenic | 30.0% | |
| GGATCTACAACAACATAAAA+AGG | - | chr7.3:35733555-35733574 | None:intergenic | 30.0% | |
| GTGGATTCTCATATAAAGTT+GGG | - | chr7.3:35733428-35733447 | None:intergenic | 30.0% | |
| GTTGAATCGAAAGAAACTAA+GGG | + | chr7.3:35730784-35730803 | MS.gene000480:CDS | 30.0% | |
| GTTGTATCCATAAACTATCT+TGG | + | chr7.3:35730443-35730462 | MS.gene000480:intron | 30.0% | |
| TCACTCTAAGTCAAAAACTA+TGG | - | chr7.3:35732526-35732545 | None:intergenic | 30.0% | |
| TCATTGCAAAAAGGATAACA+AGG | + | chr7.3:35730762-35730781 | MS.gene000480:CDS | 30.0% | |
| TCGATAATACCATCTTAGTT+TGG | + | chr7.3:35731838-35731857 | MS.gene000480:intron | 30.0% | |
| TCTAGTCTATTTGTGACATT+TGG | + | chr7.3:35731334-35731353 | MS.gene000480:intron | 30.0% | |
| TTATAGACTTCTCAAGTCAA+CGG | - | chr7.3:35731992-35732011 | None:intergenic | 30.0% | |
| TTGTGTAATCCATCACAAAA+AGG | - | chr7.3:35731120-35731139 | None:intergenic | 30.0% | |
| ! | AATCTGTTTCCTTTTTGTGA+TGG | + | chr7.3:35731108-35731127 | MS.gene000480:intron | 30.0% |
| ! | AGTGGATTCTCATATAAAGT+TGG | - | chr7.3:35733429-35733448 | None:intergenic | 30.0% |
| ! | ATAATACCATCTTAGTTTGG+TGG | + | chr7.3:35731841-35731860 | MS.gene000480:intron | 30.0% |
| ! | TTGTTATCCTTTTTGCAATG+AGG | - | chr7.3:35730763-35730782 | None:intergenic | 30.0% |
| !!! | ACTGATTTTTTGTAAACCAC+TGG | + | chr7.3:35732832-35732851 | MS.gene000480:intron | 30.0% |
| !!! | AGAATATTTTGGTTGTTACC+TGG | - | chr7.3:35733467-35733486 | None:intergenic | 30.0% |
| AAACACTTGTGAGACTGTTA+GGG | - | chr7.3:35730532-35730551 | None:intergenic | 35.0% | |
| AAATCACCACCAAACTAAGA+TGG | - | chr7.3:35731850-35731869 | None:intergenic | 35.0% | |
| AACCAATCACCCACAATAAA+AGG | - | chr7.3:35730669-35730688 | None:intergenic | 35.0% | |
| AATTTGTCTGACTCATTGTG+AGG | - | chr7.3:35733229-35733248 | None:intergenic | 35.0% | |
| ACATAGAAAACCAATTTGGG+AGG | - | chr7.3:35731221-35731240 | None:intergenic | 35.0% | |
| ACTTGCTCGAGATTAATAAC+CGG | - | chr7.3:35731315-35731334 | None:intergenic | 35.0% | |
| AGAAAACAAAAACGTGGTCA+TGG | - | chr7.3:35732290-35732309 | None:intergenic | 35.0% | |
| AGAAACTAGTAAAATGGCCT+CGG | - | chr7.3:35731613-35731632 | None:intergenic | 35.0% | |
| AGCAATGTTAGCAAAGAAAG+AGG | - | chr7.3:35732573-35732592 | None:intergenic | 35.0% | |
| AGCTTTGCAGAAGAAGAAAA+AGG | + | chr7.3:35733576-35733595 | MS.gene000480:CDS | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | + | chr7.3:35731405-35731424 | MS.gene000480:CDS | 35.0% | |
| ATAGAAAACCAATTTGGGAG+GGG | - | chr7.3:35731219-35731238 | None:intergenic | 35.0% | |
| ATGTGTGCAAACTACTTGTT+AGG | + | chr7.3:35733347-35733366 | MS.gene000480:intron | 35.0% | |
| ATTGATTGAGGTCTGCAAAT+TGG | + | chr7.3:35733276-35733295 | MS.gene000480:intron | 35.0% | |
| ATTGTCTACACTTCTAGTCT+AGG | + | chr7.3:35732876-35732895 | MS.gene000480:intron | 35.0% | |
| CAACAACTTTCGATCATACT+AGG | - | chr7.3:35731896-35731915 | None:intergenic | 35.0% | |
| CAATCGAGAAAACAAAAACG+TGG | - | chr7.3:35732296-35732315 | None:intergenic | 35.0% | |
| CATAGAAAACCAATTTGGGA+GGG | - | chr7.3:35731220-35731239 | None:intergenic | 35.0% | |
| CCAAGTTCAACATCAAATGT+CGG | - | chr7.3:35730729-35730748 | None:intergenic | 35.0% | |
| CTATGGCTAACCAAAACAAT+TGG | - | chr7.3:35732509-35732528 | None:intergenic | 35.0% | |
| GAAATTGAGGCTAAGGATAA+TGG | + | chr7.3:35730147-35730166 | MS.gene000480:CDS | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | - | chr7.3:35732326-35732345 | None:intergenic | 35.0% | |
| GGTTGAATCGAAAGAAACTA+AGG | + | chr7.3:35730783-35730802 | MS.gene000480:CDS | 35.0% | |
| TAAACACTTGTGAGACTGTT+AGG | - | chr7.3:35730533-35730552 | None:intergenic | 35.0% | |
| TACATGATAATAGCATCCAG+TGG | - | chr7.3:35732851-35732870 | None:intergenic | 35.0% | |
| TAGTCTAGGGGAAAAGAAAA+TGG | + | chr7.3:35732890-35732909 | MS.gene000480:intron | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | + | chr7.3:35732326-35732345 | MS.gene000480:CDS | 35.0% | |
| TATGTATTTGAAAAGGGGTG+TGG | + | chr7.3:35732121-35732140 | MS.gene000480:intron | 35.0% | |
| TGAGAATGAAATTGAGGCTA+AGG | + | chr7.3:35730140-35730159 | MS.gene000480:CDS | 35.0% | |
| TGCATACTGGAAATTGTTGA+AGG | + | chr7.3:35731744-35731763 | MS.gene000480:CDS | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | - | chr7.3:35730180-35730199 | None:intergenic | 35.0% | |
| TTCTTTGCTAACATTGCTGA+TGG | + | chr7.3:35732575-35732594 | MS.gene000480:intron | 35.0% | |
| TTGTATGTGAATTTCAGTGC+AGG | + | chr7.3:35731381-35731400 | MS.gene000480:intron | 35.0% | |
| TTGTCTACACTTCTAGTCTA+GGG | + | chr7.3:35732877-35732896 | MS.gene000480:intron | 35.0% | |
| ! | AACATTGCTGATGGATAAAC+TGG | + | chr7.3:35732584-35732603 | MS.gene000480:intron | 35.0% |
| ! | ACATTGCTGATGGATAAACT+GGG | + | chr7.3:35732585-35732604 | MS.gene000480:intron | 35.0% |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | + | chr7.3:35730185-35730204 | MS.gene000480:CDS | 35.0% |
| ! | TACTCTTCTATGCACAGTTT+TGG | + | chr7.3:35731795-35731814 | MS.gene000480:intron | 35.0% |
| ! | TCATTTTATCAAGGCTTCCA+CGG | - | chr7.3:35733255-35733274 | None:intergenic | 35.0% |
| ! | TGACTTTTATACTAATCCGG+TGG | + | chr7.3:35733000-35733019 | MS.gene000480:intron | 35.0% |
| ! | TTAATCTCGAGTTTGAGTTC+CGG | + | chr7.3:35731293-35731312 | MS.gene000480:intron | 35.0% |
| ! | TTCCTTTTATTGTGGGTGAT+TGG | + | chr7.3:35730664-35730683 | MS.gene000480:intron | 35.0% |
| ! | TTTTCTTCTTCTGCAAAGCT+CGG | - | chr7.3:35733576-35733595 | None:intergenic | 35.0% |
| !! | AAAATATTCGGTGGCAGTTT+TGG | + | chr7.3:35733399-35733418 | MS.gene000480:CDS | 35.0% |
| !! | ATCTTAGTTTGGTGGTGATT+TGG | + | chr7.3:35731849-35731868 | MS.gene000480:intron | 35.0% |
| !! | CAAATTGAAGCATTAGCCTT+AGG | + | chr7.3:35732621-35732640 | MS.gene000480:intron | 35.0% |
| !! | CGATTGTTGATGACCATATA+TGG | + | chr7.3:35732310-35732329 | MS.gene000480:CDS | 35.0% |
| !! | TCTTAGTTTGGTGGTGATTT+GGG | + | chr7.3:35731850-35731869 | MS.gene000480:intron | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | + | chr7.3:35730199-35730218 | MS.gene000480:CDS | 35.0% |
| !!! | ACTTGCATTTTTTGCAGATG+TGG | + | chr7.3:35733101-35733120 | MS.gene000480:intron | 35.0% |
| !!! | ATTTTGGTTGTTACCTGGTT+TGG | - | chr7.3:35733462-35733481 | None:intergenic | 35.0% |
| !!! | CTGCCACCGAATATTTTAAT+AGG | - | chr7.3:35733396-35733415 | None:intergenic | 35.0% |
| !!! | GGGTGATTGGTTTTTGAATA+TGG | + | chr7.3:35730677-35730696 | MS.gene000480:intron | 35.0% |
| !!! | GTTTGTGCTTGTTTTGAGTT+TGG | + | chr7.3:35730279-35730298 | MS.gene000480:intron | 35.0% |
| AAACTATCTTGGAGAGCTCA+TGG | + | chr7.3:35730454-35730473 | MS.gene000480:intron | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | + | chr7.3:35733633-35733652 | MS.gene000480:CDS | 40.0% | |
| ACAAAAACGTGGTCATGGAA+AGG | - | chr7.3:35732285-35732304 | None:intergenic | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | + | chr7.3:35733614-35733633 | MS.gene000480:CDS | 40.0% | |
| ATAGGATTCAAGCAAAACCG+TGG | - | chr7.3:35733378-35733397 | None:intergenic | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | + | chr7.3:35731664-35731683 | MS.gene000480:CDS | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | + | chr7.3:35731385-35731404 | MS.gene000480:intron | 40.0% | |
| CAAAACAAGCACAAACTGTG+CGG | - | chr7.3:35730275-35730294 | None:intergenic | 40.0% | |
| CACATATCTGCAAACTCATC+AGG | - | chr7.3:35733673-35733692 | None:intergenic | 40.0% | |
| CCGACATTTGATGTTGAACT+TGG | + | chr7.3:35730726-35730745 | MS.gene000480:CDS | 40.0% | |
| CCTGTTTGTAAAGGAACCTA+AGG | - | chr7.3:35732640-35732659 | None:intergenic | 40.0% | |
| CCTTAGGTTCCTTTACAAAC+AGG | + | chr7.3:35732637-35732656 | MS.gene000480:intron | 40.0% | |
| CTGATGAGTTTGCAGATATG+TGG | + | chr7.3:35733671-35733690 | MS.gene000480:CDS | 40.0% | |
| CTTACTGGGAATCACCTAAA+AGG | + | chr7.3:35731679-35731698 | MS.gene000480:CDS | 40.0% | |
| CTTATCCTTCCATCCCAAAA+GGG | - | chr7.3:35730112-35730131 | None:intergenic | 40.0% | |
| GAAGAGAAAGCGAAGTGAAA+AGG | + | chr7.3:35730029-35730048 | MS.gene000480:CDS | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | + | chr7.3:35731766-35731785 | MS.gene000480:intron | 40.0% | |
| GAGCTATGCTATGTTGTTGT+TGG | + | chr7.3:35730929-35730948 | MS.gene000480:intron | 40.0% | |
| GAGCTCTCCAAGATAGTTTA+TGG | - | chr7.3:35730453-35730472 | None:intergenic | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | - | chr7.3:35730113-35730132 | None:intergenic | 40.0% | |
| TGCAAATGCAAACACAAACC+TGG | - | chr7.3:35732347-35732366 | None:intergenic | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | + | chr7.3:35731665-35731684 | MS.gene000480:CDS | 40.0% | |
| TGTCTACACTTCTAGTCTAG+GGG | + | chr7.3:35732878-35732897 | MS.gene000480:intron | 40.0% | |
| TTGCAGAAGAAGAAAAAGGC+TGG | + | chr7.3:35733580-35733599 | MS.gene000480:CDS | 40.0% | |
| ! | ATTTTATCAAGGCTTCCACG+GGG | - | chr7.3:35733253-35733272 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCAC+GGG | - | chr7.3:35733254-35733273 | None:intergenic | 40.0% |
| ! | CCAGATATTTGAAACACCGA+AGG | + | chr7.3:35732242-35732261 | MS.gene000480:intron | 40.0% |
| ! | GTGCAAACTACTTGTTAGGT+TGG | + | chr7.3:35733351-35733370 | MS.gene000480:intron | 40.0% |
| !! | ACAAATAAGCACTGGCATCT+TGG | + | chr7.3:35732472-35732491 | MS.gene000480:intron | 40.0% |
| !! | CCTTCGGTGTTTCAAATATC+TGG | - | chr7.3:35732245-35732264 | None:intergenic | 40.0% |
| !! | CTTAGTTTGGTGGTGATTTG+GGG | + | chr7.3:35731851-35731870 | MS.gene000480:intron | 40.0% |
| !! | TTAGTTTGGTGGTGATTTGG+GGG | + | chr7.3:35731852-35731871 | MS.gene000480:intron | 40.0% |
| AAATTTAACAGACGGGCCGT+TGG | - | chr7.3:35731444-35731463 | None:intergenic | 45.0% | |
| AAGTGAAAAGGCTGAAGCTG+AGG | + | chr7.3:35730041-35730060 | MS.gene000480:CDS | 45.0% | |
| AATTCCTCCATTGTGTGCAC+TGG | - | chr7.3:35731655-35731674 | None:intergenic | 45.0% | |
| AATTTAACAGACGGGCCGTT+GGG | - | chr7.3:35731443-35731462 | None:intergenic | 45.0% | |
| ACGCTACCACATGTGATTGA+CGG | + | chr7.3:35732948-35732967 | MS.gene000480:intron | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | + | chr7.3:35733617-35733636 | MS.gene000480:CDS | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | + | chr7.3:35730166-35730185 | MS.gene000480:CDS | 45.0% | |
| CAATTTGGGAGGGGAAACAA+AGG | - | chr7.3:35731210-35731229 | None:intergenic | 45.0% | |
| CTCAACAAGCTCATTCAAGG+TGG | - | chr7.3:35730812-35730831 | None:intergenic | 45.0% | |
| GAGCTCAACAAGCTCATTCA+AGG | - | chr7.3:35730815-35730834 | None:intergenic | 45.0% | |
| GCTTCTGCCTCATTGCAAAA+AGG | + | chr7.3:35730753-35730772 | MS.gene000480:CDS | 45.0% | |
| GTAGATCCGTCAATCACATG+TGG | - | chr7.3:35732957-35732976 | None:intergenic | 45.0% | |
| GTTGAAGGAGATGCTGTTAC+AGG | + | chr7.3:35731759-35731778 | MS.gene000480:CDS | 45.0% | |
| ! | AAAGAGGACGAGAGCCTTTT+AGG | - | chr7.3:35731696-35731715 | None:intergenic | 45.0% |
| ! | AATCACATGTGGTAGCGTCA+TGG | - | chr7.3:35732946-35732965 | None:intergenic | 45.0% |
| ! | CTGCACACAAAGAGCTTGTT+TGG | - | chr7.3:35730585-35730604 | None:intergenic | 45.0% |
| ! | CTTTGTTTCCCCTCCCAAAT+TGG | + | chr7.3:35731208-35731227 | MS.gene000480:intron | 45.0% |
| ! | GCTCTAGGCGTATTGTTTAC+AGG | + | chr7.3:35730214-35730233 | MS.gene000480:CDS | 45.0% |
| ! | GGAGCAACATCCTCCTTTTT+GGG | - | chr7.3:35730072-35730091 | None:intergenic | 45.0% |
| ! | TGGAGCAACATCCTCCTTTT+TGG | - | chr7.3:35730073-35730092 | None:intergenic | 45.0% |
| ! | TTAGCCTTTCTGTGGTCCTT+CGG | - | chr7.3:35732261-35732280 | None:intergenic | 45.0% |
| !! | AACATCCTCCTTTTTGGGCA+CGG | - | chr7.3:35730067-35730086 | None:intergenic | 45.0% |
| !! | ATATTCGGTGGCAGTTTTGG+AGG | + | chr7.3:35733402-35733421 | MS.gene000480:CDS | 45.0% |
| !! | CTACTTGTTAGGTTGGTCCA+CGG | + | chr7.3:35733358-35733377 | MS.gene000480:intron | 45.0% |
| AACACCGAAGGACCACAGAA+AGG | + | chr7.3:35732254-35732273 | MS.gene000480:CDS | 50.0% | |
| ATTTAACAGACGGGCCGTTG+GGG | - | chr7.3:35731442-35731461 | None:intergenic | 50.0% | |
| CTCATCAGGCTCAAGAGGAT+TGG | - | chr7.3:35733659-35733678 | None:intergenic | 50.0% | |
| CTGCTTTCCAGTGCACACAA+TGG | + | chr7.3:35731645-35731664 | MS.gene000480:intron | 50.0% | |
| CTTTCCAGTGCACACAATGG+AGG | + | chr7.3:35731648-35731667 | MS.gene000480:intron | 50.0% | |
| GAGTCAGACAAATTACCCCG+TGG | + | chr7.3:35733235-35733254 | MS.gene000480:CDS | 50.0% | |
| GCAAACTCATCAGGCTCAAG+AGG | - | chr7.3:35733664-35733683 | None:intergenic | 50.0% | |
| GGCTGGAACGTTTGCAAAGA+AGG | + | chr7.3:35733597-35733616 | MS.gene000480:CDS | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | + | chr7.3:35731425-35731444 | MS.gene000480:CDS | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | + | chr7.3:35730096-35730115 | MS.gene000480:CDS | 50.0% |
| ! | GGAAAGGCTTAGCCTTTCTG+TGG | - | chr7.3:35732269-35732288 | None:intergenic | 50.0% |
| !!! | GCGCGCGTGCATTTTTTTCT+TGG | + | chr7.3:35732155-35732174 | MS.gene000480:intron | 50.0% |
| ACCGTCTCTCTTTCTCTCCG+AGG | + | chr7.3:35731593-35731612 | MS.gene000480:intron | 55.0% | |
| ACTCTACGTGTCGCCAAACC+AGG | + | chr7.3:35733446-35733465 | MS.gene000480:CDS | 55.0% | |
| CATCCCAAAAGGGTCCTCAC+TGG | - | chr7.3:35730102-35730121 | None:intergenic | 55.0% | |
| GCCTCGGAGAGAAAGAGAGA+CGG | - | chr7.3:35731597-35731616 | None:intergenic | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | + | chr7.3:35730085-35730104 | MS.gene000480:CDS | 55.0% | |
| ! | GAGACCAGTGAGGACCCTTT+TGG | + | chr7.3:35730095-35730114 | MS.gene000480:CDS | 55.0% |
| ! | TGGTTTGGCGACACGTAGAG+TGG | - | chr7.3:35733447-35733466 | None:intergenic | 55.0% |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | + | chr7.3:35730100-35730119 | MS.gene000480:CDS | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | + | chr7.3:35730104-35730123 | MS.gene000480:CDS | 55.0% |
| AGCTGAGGCCGTGCCCAAAA+AGG | + | chr7.3:35730056-35730075 | MS.gene000480:CDS | 60.0% | |
| TGAGGCCGTGCCCAAAAAGG+AGG | + | chr7.3:35730059-35730078 | MS.gene000480:CDS | 60.0% | |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | - | chr7.3:35730093-35730112 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 35730024 | 35733702 | 35730024 | ID=MS.gene000480 |
| chr7.3 | mRNA | 35730024 | 35733702 | 35730024 | ID=MS.gene000480.t1;Parent=MS.gene000480 |
| chr7.3 | exon | 35730024 | 35730235 | 35730024 | ID=MS.gene000480.t1.exon1;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35730024 | 35730235 | 35730024 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| chr7.3 | exon | 35730723 | 35730864 | 35730723 | ID=MS.gene000480.t1.exon2;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35730723 | 35730864 | 35730723 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| chr7.3 | exon | 35731398 | 35731476 | 35731398 | ID=MS.gene000480.t1.exon3;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35731398 | 35731476 | 35731398 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| chr7.3 | exon | 35731656 | 35731780 | 35731656 | ID=MS.gene000480.t1.exon4;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35731656 | 35731780 | 35731656 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| chr7.3 | exon | 35732246 | 35732347 | 35732246 | ID=MS.gene000480.t1.exon5;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35732246 | 35732347 | 35732246 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| chr7.3 | exon | 35733217 | 35733285 | 35733217 | ID=MS.gene000480.t1.exon6;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35733217 | 35733285 | 35733217 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| chr7.3 | exon | 35733369 | 35733467 | 35733369 | ID=MS.gene000480.t1.exon7;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35733369 | 35733467 | 35733369 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| chr7.3 | exon | 35733571 | 35733702 | 35733571 | ID=MS.gene000480.t1.exon8;Parent=MS.gene000480.t1 |
| chr7.3 | CDS | 35733571 | 35733702 | 35733571 | ID=cds.MS.gene000480.t1;Parent=MS.gene000480.t1 |
| Gene Sequence |
| Protein sequence |
