Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61130.t1 | XP_004487038.1 | 97.4 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 4.50E-73 | 283.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61130.t1 | Q9AT35 | 87.0 | 154 | 19 | 1 | 1 | 153 | 1 | 154 | 1.3e-65 | 250.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61130.t1 | A0A1S2XC20 | 97.4 | 153 | 4 | 0 | 1 | 153 | 1 | 153 | 3.2e-73 | 283.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61130.t1 | MTR_4g063060 | 98.693 | 153 | 1 | 1 | 1 | 153 | 1 | 152 | 1.17e-103 | 293 |
MS.gene61130.t1 | MTR_2g096340 | 96.689 | 151 | 5 | 0 | 3 | 153 | 4 | 154 | 4.98e-101 | 286 |
MS.gene61130.t1 | MTR_2g096340 | 96.644 | 149 | 5 | 0 | 5 | 153 | 13 | 161 | 2.55e-99 | 282 |
MS.gene61130.t1 | MTR_7g023260 | 92.053 | 151 | 12 | 0 | 3 | 153 | 4 | 154 | 1.65e-67 | 202 |
MS.gene61130.t1 | MTR_4g007840 | 94.595 | 37 | 2 | 0 | 117 | 153 | 36 | 72 | 1.95e-18 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61130.t1 | AT3G55280 | 87.662 | 154 | 18 | 1 | 1 | 153 | 1 | 154 | 2.30e-70 | 209 |
MS.gene61130.t1 | AT3G55280 | 87.662 | 154 | 18 | 1 | 1 | 153 | 1 | 154 | 2.30e-70 | 209 |
MS.gene61130.t1 | AT2G39460 | 89.844 | 128 | 13 | 0 | 26 | 153 | 27 | 154 | 1.19e-66 | 199 |
MS.gene61130.t1 | AT2G39460 | 89.844 | 128 | 13 | 0 | 26 | 153 | 27 | 154 | 1.19e-66 | 199 |
MS.gene61130.t1 | AT3G55280 | 92.373 | 118 | 9 | 0 | 36 | 153 | 31 | 148 | 2.54e-66 | 199 |
Find 43 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTATCCCTTGTTTGTGTCTT+TGG | 0.162619 | 4.4:+42795340 | None:intergenic |
GCTTTCAATGCCTGTGCCTT+TGG | 0.265621 | 4.4:+42795439 | None:intergenic |
GGCACTGATGCGAGGATATT+TGG | 0.276630 | 4.4:+42795312 | None:intergenic |
TATCCCTTGTTTGTGTCTTT+GGG | 0.296408 | 4.4:+42795341 | None:intergenic |
CAACCTAACATAGGCCTTCT+TGG | 0.308307 | 4.4:+42794604 | None:intergenic |
GCACTGATGCGAGGATATTT+GGG | 0.324549 | 4.4:+42795313 | None:intergenic |
TAGTGGTCAAGCTTGTTTCT+TGG | 0.344862 | 4.4:+42795286 | None:intergenic |
TTGGATGTAGCAAACAAGAT+TGG | 0.425365 | 4.4:-42794563 | MS.gene61130:CDS |
ACATCCAATGCATCGTAATC+AGG | 0.425991 | 4.4:+42794578 | None:intergenic |
CAATGCCTGTGCCTTTGGAT+CGG | 0.450132 | 4.4:+42795444 | None:intergenic |
AGGTGTTAACCTTCTTCGCC+TGG | 0.454264 | 4.4:+42795128 | None:intergenic |
TGGATGTAGCAAACAAGATT+GGG | 0.476041 | 4.4:-42794562 | MS.gene61130:CDS |
GCTGCCAAGGCAGTCAAGTC+AGG | 0.480557 | 4.4:-42795418 | MS.gene61130:CDS |
GTCAAGCTTGTTTCTTGGTG+TGG | 0.490928 | 4.4:+42795291 | None:intergenic |
GTACCAAGAAGGCCTATGTT+AGG | 0.503933 | 4.4:-42794607 | MS.gene61130:CDS |
CATAAATGCTCACCTGATCA+AGG | 0.508831 | 4.4:+42795108 | None:intergenic |
GGAACTTCAAAATCTGATAG+TGG | 0.511992 | 4.4:+42795269 | None:intergenic |
TTGTTTGTGTCTTTGGGCGA+TGG | 0.513342 | 4.4:+42795347 | None:intergenic |
AATTGAGGATAACAACACTT+TGG | 0.518687 | 4.4:-42795218 | MS.gene61130:CDS |
ATAGGCCTTCTTGGTACCAT+CGG | 0.519310 | 4.4:+42794613 | None:intergenic |
GAAGAAAATGTATGACATCC+AGG | 0.526017 | 4.4:-42795146 | MS.gene61130:CDS |
AGAAGGTTAACACCTTGATC+AGG | 0.531796 | 4.4:-42795120 | MS.gene61130:intron |
GACACCTGATTACGATGCAT+TGG | 0.535533 | 4.4:-42794582 | MS.gene61130:CDS |
AGTGCCTGACTTGACTGCCT+TGG | 0.543420 | 4.4:+42795414 | None:intergenic |
TAGGCCTTCTTGGTACCATC+GGG | 0.543529 | 4.4:+42794614 | None:intergenic |
CAAAGACACAAACAAGGGAT+AGG | 0.544147 | 4.4:-42795339 | MS.gene61130:CDS |
CAGGAATCAATGGCTCCAAA+AGG | 0.548086 | 4.4:-42796545 | None:intergenic |
AGGCACTGCTATTAAGAAGA+AGG | 0.555789 | 4.4:-42795398 | MS.gene61130:CDS |
GTATGACATCCAGGCGAAGA+AGG | 0.560881 | 4.4:-42795137 | MS.gene61130:CDS |
TTAATCTGTTGCAGGCCCGA+TGG | 0.562967 | 4.4:-42794629 | MS.gene61130:intron |
ACAGGCATTGAAAGCTGCCA+AGG | 0.571400 | 4.4:-42795431 | MS.gene61130:CDS |
GAAGACCGATCCAAAGGCAC+AGG | 0.572296 | 4.4:-42795449 | MS.gene61130:CDS |
GTCCGCTATGAAGAAAATTG+AGG | 0.584569 | 4.4:-42795233 | MS.gene61130:CDS |
CAGGCCCGATGGTACCAAGA+AGG | 0.589470 | 4.4:-42794618 | MS.gene61130:CDS |
TAGCGGACTCAGTGGTGAGT+GGG | 0.605079 | 4.4:+42795248 | None:intergenic |
TTCTAAGAAGACCGATCCAA+AGG | 0.610830 | 4.4:-42795455 | MS.gene61130:CDS |
CACTGATGCGAGGATATTTG+GGG | 0.617729 | 4.4:+42795314 | None:intergenic |
CTTGGTGTGGCACTGATGCG+AGG | 0.626082 | 4.4:+42795304 | None:intergenic |
ATAGCGGACTCAGTGGTGAG+TGG | 0.634672 | 4.4:+42795247 | None:intergenic |
ATCAGGTGTCAACCTAACAT+AGG | 0.641379 | 4.4:+42794595 | None:intergenic |
ATCGCCCAAAGACACAAACA+AGG | 0.648974 | 4.4:-42795345 | MS.gene61130:CDS |
TTTCTTCATAGCGGACTCAG+TGG | 0.651024 | 4.4:+42795240 | None:intergenic |
TCGCCCAAAGACACAAACAA+GGG | 0.727590 | 4.4:-42795344 | MS.gene61130:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTAATCAAATAATGCA+TGG | - | chr4.4:42795512-42795531 | MS.gene61130:intron | 15.0% |
!! | AATCAAATCATACATGAAAA+TGG | + | chr4.4:42794748-42794767 | None:intergenic | 20.0% |
!! | AGCTTATGATATAACATTAA+GGG | + | chr4.4:42795400-42795419 | None:intergenic | 20.0% |
!! | CTGAAGAACTTATAAAATTA+AGG | - | chr4.4:42794953-42794972 | MS.gene61130:intron | 20.0% |
!! | TTAATTATTATAGTTCAGCA+TGG | - | chr4.4:42796407-42796426 | MS.gene61130:intron | 20.0% |
!!! | CTTAATTTTATAAGTTCTTC+AGG | + | chr4.4:42794955-42794974 | None:intergenic | 20.0% |
!!! | CTTACATAAGCTATTTTTAT+AGG | - | chr4.4:42795103-42795122 | MS.gene61130:intron | 20.0% |
!!! | TTCATGTATGATTTGATTTT+AGG | - | chr4.4:42794750-42794769 | MS.gene61130:intron | 20.0% |
!!! | TTTTCACTAACAAAAATGAA+TGG | + | chr4.4:42794636-42794655 | None:intergenic | 20.0% |
! | ATCAAATAATGCATGGAATT+AGG | - | chr4.4:42795519-42795538 | MS.gene61130:intron | 25.0% |
! | ATGATGAGCAAAAAAAAGTT+AGG | - | chr4.4:42794808-42794827 | MS.gene61130:intron | 25.0% |
! | ATTAAGGTGAAATTAGTGTA+TGG | - | chr4.4:42794969-42794988 | MS.gene61130:intron | 25.0% |
! | CAGCTTATGATATAACATTA+AGG | + | chr4.4:42795401-42795420 | None:intergenic | 25.0% |
! | GATTTACAAATTTGAGCTTA+TGG | + | chr4.4:42795013-42795032 | None:intergenic | 25.0% |
! | TACAAATTATCTCAAATGTC+AGG | + | chr4.4:42796115-42796134 | None:intergenic | 25.0% |
! | TGCTGATAAGAAAAAGATTA+AGG | - | chr4.4:42795913-42795932 | MS.gene61130:intron | 25.0% |
!! | AGAAAATTGAAGTTACCTTT+TGG | + | chr4.4:42794562-42794581 | None:intergenic | 25.0% |
!! | GATTAATACTGATTATCCAT+AGG | - | chr4.4:42795475-42795494 | MS.gene61130:intron | 25.0% |
!! | TTCTAGTTGAATATGTGTTT+AGG | - | chr4.4:42796245-42796264 | MS.gene61130:intron | 25.0% |
AATAAGTTGCTTAACCAAAC+AGG | + | chr4.4:42795053-42795072 | None:intergenic | 30.0% | |
AATTGAGGATAACAACACTT+TGG | - | chr4.4:42795871-42795890 | MS.gene61130:intron | 30.0% | |
AGAAAACAGAAAACCATTGT+TGG | + | chr4.4:42796229-42796248 | None:intergenic | 30.0% | |
AGCACATAAACTTAAATCAG+TGG | + | chr4.4:42794599-42794618 | None:intergenic | 30.0% | |
ATGTCTGCAAAATATACTAC+TGG | + | chr4.4:42796140-42796159 | None:intergenic | 30.0% | |
ATTTATGCAGTTACTGTTCA+AGG | - | chr4.4:42795997-42796016 | MS.gene61130:intron | 30.0% | |
TTAGGCATTAATACCAACAA+TGG | - | chr4.4:42796213-42796232 | MS.gene61130:intron | 30.0% | |
! | ATCCTCAATTTTCTTCATAG+CGG | + | chr4.4:42795861-42795880 | None:intergenic | 30.0% |
! | GAATCTGGAATTAATGATCA+GGG | - | chr4.4:42796355-42796374 | MS.gene61130:intron | 30.0% |
! | TTCTAGTTGAATACGTGTTT+AGG | - | chr4.4:42796195-42796214 | MS.gene61130:intron | 30.0% |
!!! | TTTTTTGCTCATCATAACTC+AGG | + | chr4.4:42794803-42794822 | None:intergenic | 30.0% |
AACTATCCTTACATCCTGTT+TGG | - | chr4.4:42795036-42795055 | MS.gene61130:intron | 35.0% | |
CTAGAAAACAGAACCATTGT+TGG | + | chr4.4:42796279-42796298 | None:intergenic | 35.0% | |
GAAGAAAATGTATGACATCC+AGG | - | chr4.4:42795943-42795962 | MS.gene61130:intron | 35.0% | |
GGAACTTCAAAATCTGATAG+TGG | + | chr4.4:42795823-42795842 | None:intergenic | 35.0% | |
TATAACATTAAGGGCCTGTT+TGG | + | chr4.4:42795391-42795410 | None:intergenic | 35.0% | |
TATACTGAACCAAAAGCCTA+TGG | + | chr4.4:42795494-42795513 | None:intergenic | 35.0% | |
TCAAATAAGCCAATCCAAAC+AGG | - | chr4.4:42795374-42795393 | MS.gene61130:CDS | 35.0% | |
TGGATGTAGCAAACAAGATT+GGG | - | chr4.4:42796527-42796546 | MS.gene61130:intron | 35.0% | |
TTGGATGTAGCAAACAAGAT+TGG | - | chr4.4:42796526-42796545 | MS.gene61130:intron | 35.0% | |
! | ACAGGATGTAAGGATAGTTT+TGG | + | chr4.4:42795035-42795054 | None:intergenic | 35.0% |
! | ACTGATTATCCATAGGCTTT+TGG | - | chr4.4:42795482-42795501 | MS.gene61130:intron | 35.0% |
! | GGAATCTGGAATTAATGATC+AGG | - | chr4.4:42796354-42796373 | MS.gene61130:intron | 35.0% |
! | TATCCCTTGTTTGTGTCTTT+GGG | + | chr4.4:42795751-42795770 | None:intergenic | 35.0% |
! | TCGACTTTTTAATCTGTTGC+AGG | - | chr4.4:42796452-42796471 | MS.gene61130:intron | 35.0% |
!! | AGACATACCGAACCATTTTT+GGG | - | chr4.4:42796154-42796173 | MS.gene61130:intron | 35.0% |
!! | CTTATGCAATGTTTTTGCAC+AGG | - | chr4.4:42795605-42795624 | MS.gene61130:intron | 35.0% |
AAACCGCCAAAACCCAAAAA+TGG | + | chr4.4:42796169-42796188 | None:intergenic | 40.0% | |
ACATCCAATGCATCGTAATC+AGG | + | chr4.4:42796514-42796533 | None:intergenic | 40.0% | |
ACCCTAACAAAACATGCGAA+GGG | + | chr4.4:42796088-42796107 | None:intergenic | 40.0% | |
AGAAGGTTAACACCTTGATC+AGG | - | chr4.4:42795969-42795988 | MS.gene61130:intron | 40.0% | |
AGTTCAGTGCAATGCTATCA+GGG | - | chr4.4:42796329-42796348 | MS.gene61130:intron | 40.0% | |
ATACGTTGTGTGAGACTGTT+TGG | + | chr4.4:42795340-42795359 | None:intergenic | 40.0% | |
ATAGCATTGCACTGAACTGT+TGG | + | chr4.4:42796327-42796346 | None:intergenic | 40.0% | |
ATCAGGTGTCAACCTAACAT+AGG | + | chr4.4:42796497-42796516 | None:intergenic | 40.0% | |
CAAAGACACAAACAAGGGAT+AGG | - | chr4.4:42795750-42795769 | MS.gene61130:intron | 40.0% | |
CATAAATGCTCACCTGATCA+AGG | + | chr4.4:42795984-42796003 | None:intergenic | 40.0% | |
GAGTTTGTAAGCGACTGTTT+AGG | - | chr4.4:42794772-42794791 | MS.gene61130:intron | 40.0% | |
GCCAAAACCCAAAAATGGTT+CGG | + | chr4.4:42796164-42796183 | None:intergenic | 40.0% | |
GCTTAACCAAACAGGATGTA+AGG | + | chr4.4:42795045-42795064 | None:intergenic | 40.0% | |
GTCCGCTATGAAGAAAATTG+AGG | - | chr4.4:42795856-42795875 | MS.gene61130:intron | 40.0% | |
TACGTTGTGTGAGACTGTTT+GGG | + | chr4.4:42795339-42795358 | None:intergenic | 40.0% | |
! | AGGCACTGCTATTAAGAAGA+AGG | - | chr4.4:42795691-42795710 | MS.gene61130:intron | 40.0% |
! | CAGACATACCGAACCATTTT+TGG | - | chr4.4:42796153-42796172 | MS.gene61130:intron | 40.0% |
! | CTATCCCTTGTTTGTGTCTT+TGG | + | chr4.4:42795752-42795771 | None:intergenic | 40.0% |
! | TAGTGGTCAAGCTTGTTTCT+TGG | + | chr4.4:42795806-42795825 | None:intergenic | 40.0% |
! | TTCTAAGAAGACCGATCCAA+AGG | - | chr4.4:42795634-42795653 | MS.gene61130:intron | 40.0% |
!! | ACCCTTCGCATGTTTTGTTA+GGG | - | chr4.4:42796084-42796103 | MS.gene61130:intron | 40.0% |
!! | TACCCTTCGCATGTTTTGTT+AGG | - | chr4.4:42796083-42796102 | MS.gene61130:intron | 40.0% |
!!! | ACCGAACCATTTTTGGGTTT+TGG | - | chr4.4:42796160-42796179 | MS.gene61130:intron | 40.0% |
!!! | GAACCATTTTTGGGTTTTGG+CGG | - | chr4.4:42796163-42796182 | MS.gene61130:intron | 40.0% |
ATAGGCCTTCTTGGTACCAT+CGG | + | chr4.4:42796479-42796498 | None:intergenic | 45.0% | |
ATCGCCCAAAGACACAAACA+AGG | - | chr4.4:42795744-42795763 | MS.gene61130:intron | 45.0% | |
ATGCTATCAGGGTTGGAATC+TGG | - | chr4.4:42796340-42796359 | MS.gene61130:intron | 45.0% | |
CAACCTAACATAGGCCTTCT+TGG | + | chr4.4:42796488-42796507 | None:intergenic | 45.0% | |
CACCCTAACAAAACATGCGA+AGG | + | chr4.4:42796089-42796108 | None:intergenic | 45.0% | |
CACTGATGCGAGGATATTTG+GGG | + | chr4.4:42795778-42795797 | None:intergenic | 45.0% | |
CAGTTCAGTGCAATGCTATC+AGG | - | chr4.4:42796328-42796347 | MS.gene61130:intron | 45.0% | |
CATTAAGGGCCTGTTTGGAT+TGG | + | chr4.4:42795386-42795405 | None:intergenic | 45.0% | |
GACACCTGATTACGATGCAT+TGG | - | chr4.4:42796507-42796526 | MS.gene61130:intron | 45.0% | |
GTACCAAGAAGGCCTATGTT+AGG | - | chr4.4:42796482-42796501 | MS.gene61130:intron | 45.0% | |
TCGCCCAAAGACACAAACAA+GGG | - | chr4.4:42795745-42795764 | MS.gene61130:intron | 45.0% | |
TTGTTTGTGTCTTTGGGCGA+TGG | + | chr4.4:42795745-42795764 | None:intergenic | 45.0% | |
! | GCACTGATGCGAGGATATTT+GGG | + | chr4.4:42795779-42795798 | None:intergenic | 45.0% |
! | GTCAAGCTTGTTTCTTGGTG+TGG | + | chr4.4:42795801-42795820 | None:intergenic | 45.0% |
!! | CTTCGCATGTTTTGTTAGGG+TGG | - | chr4.4:42796087-42796106 | MS.gene61130:intron | 45.0% |
!! | TTTCTTCATAGCGGACTCAG+TGG | + | chr4.4:42795852-42795871 | None:intergenic | 45.0% |
AGGTGTTAACCTTCTTCGCC+TGG | + | chr4.4:42795964-42795983 | None:intergenic | 50.0% | |
CAATGCCTGTGCCTTTGGAT+CGG | + | chr4.4:42795648-42795667 | None:intergenic | 50.0% | |
CAGTGCAATGCTATCAGGGT+TGG | - | chr4.4:42796333-42796352 | MS.gene61130:intron | 50.0% | |
GCTTTCAATGCCTGTGCCTT+TGG | + | chr4.4:42795653-42795672 | None:intergenic | 50.0% | |
GTATGACATCCAGGCGAAGA+AGG | - | chr4.4:42795952-42795971 | MS.gene61130:intron | 50.0% | |
TAGGCCTTCTTGGTACCATC+GGG | + | chr4.4:42796478-42796497 | None:intergenic | 50.0% | |
TTAATCTGTTGCAGGCCCGA+TGG | - | chr4.4:42796460-42796479 | MS.gene61130:intron | 50.0% | |
!! | ACAGGCATTGAAAGCTGCCA+AGG | - | chr4.4:42795658-42795677 | MS.gene61130:intron | 50.0% |
!! | GGCACTGATGCGAGGATATT+TGG | + | chr4.4:42795780-42795799 | None:intergenic | 50.0% |
! | AGTGCCTGACTTGACTGCCT+TGG | + | chr4.4:42795678-42795697 | None:intergenic | 55.0% |
! | GAAGACCGATCCAAAGGCAC+AGG | - | chr4.4:42795640-42795659 | MS.gene61130:intron | 55.0% |
!! | ATAGCGGACTCAGTGGTGAG+TGG | + | chr4.4:42795845-42795864 | None:intergenic | 55.0% |
!! | TAGCGGACTCAGTGGTGAGT+GGG | + | chr4.4:42795844-42795863 | None:intergenic | 55.0% |
CAGGCCCGATGGTACCAAGA+AGG | - | chr4.4:42796471-42796490 | MS.gene61130:intron | 60.0% | |
GCTGCCAAGGCAGTCAAGTC+AGG | - | chr4.4:42795671-42795690 | MS.gene61130:intron | 60.0% | |
!! | CTTGGTGTGGCACTGATGCG+AGG | + | chr4.4:42795788-42795807 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 42794553 | 42796558 | 42794553 | ID=MS.gene61130 |
chr4.4 | mRNA | 42794553 | 42796558 | 42794553 | ID=MS.gene61130.t1;Parent=MS.gene61130 |
chr4.4 | exon | 42796546 | 42796558 | 42796546 | ID=MS.gene61130.t1.exon1;Parent=MS.gene61130.t1 |
chr4.4 | CDS | 42796546 | 42796558 | 42796546 | ID=cds.MS.gene61130.t1;Parent=MS.gene61130.t1 |
chr4.4 | exon | 42795121 | 42795484 | 42795121 | ID=MS.gene61130.t1.exon2;Parent=MS.gene61130.t1 |
chr4.4 | CDS | 42795121 | 42795484 | 42795121 | ID=cds.MS.gene61130.t1;Parent=MS.gene61130.t1 |
chr4.4 | exon | 42794553 | 42794637 | 42794553 | ID=MS.gene61130.t1.exon3;Parent=MS.gene61130.t1 |
chr4.4 | CDS | 42794553 | 42794637 | 42794553 | ID=cds.MS.gene61130.t1;Parent=MS.gene61130.t1 |
Gene Sequence |
Protein sequence |