AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene90360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90360.t1 MTR_1g012990 98.119 319 4 1 1 319 1 317 0.0 646
MS.gene90360.t1 MTR_7g069430 97.179 319 5 1 1 319 1 315 0.0 638
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene90360.t1 AT3G15460 79.062 320 60 3 1 319 1 314 0.0 523
MS.gene90360.t1 AT1G52930 78.125 320 67 2 1 319 1 318 0.0 504

Find 69 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCTAGGCGTATTGTTTAT+AGG 0.224171 2.4:-17525317 MS.gene90360:intron
CAATTGTTGATGACCATATA+TGG 0.275985 2.4:-17523267 MS.gene90360:CDS
AAAATATTCGGTGGCAGTTT+TGG 0.276214 2.4:-17522219 MS.gene90360:CDS
CGCTTTGCAGAAGAAGAAAA+AGG 0.301141 2.4:-17522038 MS.gene90360:CDS
ATGGAGGAATTGAAGCTTAC+TGG 0.304877 2.4:-17523927 MS.gene90360:CDS
TGGTTTGGCGACACATATAA+TGG 0.307289 2.4:+17522174 None:intergenic
GAGACCAGTGAGGACCCTTT+TGG 0.316595 2.4:-17525436 MS.gene90360:CDS
GGTAATTTCGGAACCATATA+TGG 0.326418 2.4:+17523254 None:intergenic
TGCATACTGGAAACTGTTAA+AGG 0.335855 2.4:-17523847 MS.gene90360:CDS
AGACACAAACCTGGTAATTT+CGG 0.336053 2.4:+17523242 None:intergenic
TTGAATCCAATTAAAATATT+CGG 0.338246 2.4:-17522231 MS.gene90360:CDS
TGAGAATGAAGTCGAGGTTA+AGG 0.351881 2.4:-17525391 MS.gene90360:CDS
GTTAAAGGAGATGCTGTTAC+AGG 0.353959 2.4:-17523832 MS.gene90360:intron
TTCTCTTTGTTCCTGAATAC+AGG 0.355373 2.4:+17525354 None:intergenic
ATGGTGCTTCACCTGTATTC+AGG 0.357859 2.4:-17525365 MS.gene90360:CDS
GCTTCTGCCTCATTGCAAAA+AGG 0.366733 2.4:-17524780 MS.gene90360:CDS
CTTACTGGGAATCACCTAAA+AGG 0.369692 2.4:-17523912 MS.gene90360:CDS
AGGGTCCTCACTGGTCTCTC+TGG 0.383639 2.4:+17525441 None:intergenic
GGAAAGGCTTAGCCTTTCTA+TGG 0.386528 2.4:+17523311 None:intergenic
ATAATGGTCATTACCTGGTT+TGG 0.399636 2.4:+17522159 None:intergenic
CAGGAACAAAGAGAAAGTTT+TGG 0.404050 2.4:-17525346 MS.gene90360:CDS
AATTTAACAGACGGACCGTT+GGG 0.405139 2.4:+17524156 None:intergenic
AGCTGTGGCTGTGCCCAAAA+AGG 0.410300 2.4:-17525475 MS.gene90360:CDS
CACATATCTGCAAACTCATC+AGG 0.414305 2.4:+17521944 None:intergenic
TTAGCCTTTCTATGGTCCTT+CGG 0.432964 2.4:+17523319 None:intergenic
GAGCTCAACAAGCTCGTTCA+AGG 0.438472 2.4:+17524721 None:intergenic
GGCTGGAACATTTGCAAAGA+AGG 0.442018 2.4:-17522017 MS.gene90360:CDS
AATGGATTCTCATATAAAGT+TGG 0.442109 2.4:+17522192 None:intergenic
TCTTATCCTTCCATCCCAAA+AGG 0.448553 2.4:+17525421 None:intergenic
GCATGAGATGGCCAATCCTC+TGG 0.463080 2.4:-17521969 MS.gene90360:CDS
ATGGATTCTCATATAAAGTT+GGG 0.466075 2.4:+17522193 None:intergenic
AGGCAAAAGATCTTTATCTC+TGG 0.470351 2.4:-17524191 MS.gene90360:CDS
TGATAAAATGACATTGATTG+AGG 0.479641 2.4:-17522355 MS.gene90360:intron
CTCATCAGGCTCCAGAGGAT+TGG 0.500537 2.4:+17521958 None:intergenic
CCGACATTTGATGTTGAACC+TGG 0.503744 2.4:-17524807 MS.gene90360:CDS
TTTGATGAAAATGTCAAAAG+AGG 0.513130 2.4:+17523882 None:intergenic
TATATGGTTCCGAAATTACC+AGG 0.519157 2.4:-17523251 MS.gene90360:intron
TGGAGGAATTGAAGCTTACT+GGG 0.524362 2.4:-17523926 MS.gene90360:CDS
CTTATCCTTCCATCCCAAAA+GGG 0.530204 2.4:+17525422 None:intergenic
ATTATATGTGTCGCCAAACC+AGG 0.539453 2.4:-17522172 MS.gene90360:intron
AAATTTAACAGACGGACCGT+TGG 0.547683 2.4:+17524155 None:intergenic
AATGAGGCAGAAGCGATACC+AGG 0.551260 2.4:+17524789 None:intergenic
CATCCCAAAAGGGTCCTCAC+TGG 0.551306 2.4:+17525432 None:intergenic
GAAGTCGAGGTTAAGGAGAA+TGG 0.558717 2.4:-17525384 MS.gene90360:CDS
GAAGAGAAAACGAAGCGAAA+AGG 0.560289 2.4:-17525502 MS.gene90360:CDS
AAAAGATCTTTATCTCTGGA+TGG 0.569362 2.4:-17524187 MS.gene90360:CDS
TTGATGAAAATGTCAAAAGA+GGG 0.581244 2.4:+17523883 None:intergenic
AATCCAATTAAAATATTCGG+TGG 0.581638 2.4:-17522228 MS.gene90360:CDS
GCAAACTCATCAGGCTCCAG+AGG 0.583650 2.4:+17521953 None:intergenic
AAGGAGGAAAATGCATGAGA+TGG 0.589573 2.4:-17521981 MS.gene90360:CDS
GTTGAATCGAAAGAAACTAA+AGG 0.591875 2.4:-17524749 MS.gene90360:CDS
AACTCCGAAGGACCATAGAA+AGG 0.592135 2.4:-17523323 MS.gene90360:CDS
TGAAAATGTCAAAAGAGGGC+GGG 0.598198 2.4:+17523887 None:intergenic
TACTTGTTTAGGTTGGTCCA+CGG 0.602021 2.4:-17522260 MS.gene90360:intron
CTGATGAGTTTGCAGATATG+TGG 0.604261 2.4:-17521943 MS.gene90360:CDS
AAGCGAAAAGGCTGAAGCTG+TGG 0.609947 2.4:-17525490 MS.gene90360:CDS
AGAAGGTCAAAGCAAAGACA+AGG 0.616949 2.4:-17522000 MS.gene90360:CDS
AATTTGTCTGACTCATTGTG+AGG 0.622655 2.4:+17522393 None:intergenic
TGAAAATGAGAATGAAGTCG+AGG 0.626692 2.4:-17525397 MS.gene90360:CDS
ATTGGATTCAAGCAGAACCG+TGG 0.628585 2.4:+17522243 None:intergenic
ATGAAAATGTCAAAAGAGGG+CGG 0.629935 2.4:+17523886 None:intergenic
AGGTCAAAGCAAAGACAAGG+AGG 0.640567 2.4:-17521997 MS.gene90360:CDS
TGGATGGCAAAATGCCCCAA+CGG 0.651109 2.4:-17524171 MS.gene90360:CDS
ATGTGAATTTCAGTGCAGGA+AGG 0.660599 2.4:-17524211 MS.gene90360:intron
CCAGGTTCAACATCAAATGT+CGG 0.661077 2.4:+17524807 None:intergenic
ATTTAACAGACGGACCGTTG+GGG 0.668767 2.4:+17524157 None:intergenic
CTCAACAAGCTCGTTCAAGG+TGG 0.686995 2.4:+17524724 None:intergenic
TTGCTCCAGAGAGACCAGTG+AGG 0.749614 2.4:-17525446 MS.gene90360:CDS
GAGTCAGACAAATTACCCCG+AGG 0.769107 2.4:-17522384 MS.gene90360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATTAATGTCAAA+TGG - chr2.4:17522312-17522331 MS.gene90360:intron 10.0%
!! AAATACAGCAAAATATATTT+GGG + chr2.4:17522164-17522183 None:intergenic 15.0%
!! AATAATATATAATCATAGCA+AGG + chr2.4:17523375-17523394 None:intergenic 15.0%
!! ATTGATCATAAACTTATTAT+AGG - chr2.4:17522609-17522628 MS.gene90360:intron 15.0%
!! TTGAATCCAATTAAAATATT+CGG - chr2.4:17525210-17525229 MS.gene90360:intron 15.0%
!!! CTACACTTTAAAATTTAAAA+TGG + chr2.4:17523019-17523038 None:intergenic 15.0%
!!! GATTATTTTTTATGACATTA+AGG - chr2.4:17522784-17522803 MS.gene90360:intron 15.0%
!!! TAATGCTTTAAAAATTTGAA+AGG + chr2.4:17524481-17524500 None:intergenic 15.0%
!!! TTATTTTCAGAAGAAAATTA+CGG + chr2.4:17525332-17525351 None:intergenic 15.0%
!!! TTGGTTATTTTTTAATGTAT+AGG - chr2.4:17524877-17524896 MS.gene90360:intron 15.0%
!! AAAAGAGAAATTAGTAAGAT+GGG + chr2.4:17523468-17523487 None:intergenic 20.0%
!! AGTTCTATAAATGTTATGTT+TGG - chr2.4:17523864-17523883 MS.gene90360:CDS 20.0%
!! CAAATACAGCAAAATATATT+TGG + chr2.4:17522165-17522184 None:intergenic 20.0%
!! CAGTTTACTTAATTTAAATC+TGG - chr2.4:17523093-17523112 MS.gene90360:intron 20.0%
!! CTAACTAAAAATTTAACAGA+CGG + chr2.4:17523297-17523316 None:intergenic 20.0%
!! GCTATGATTATATATTATTC+TGG - chr2.4:17523376-17523395 MS.gene90360:intron 20.0%
!! TAAAAGAGAAATTAGTAAGA+TGG + chr2.4:17523469-17523488 None:intergenic 20.0%
!! TGTCATAAAAAATAATCGAA+AGG + chr2.4:17522781-17522800 None:intergenic 20.0%
!! TTTACTTAATTTAAATCTGG+CGG - chr2.4:17523096-17523115 MS.gene90360:intron 20.0%
!!! AAAATATATTTGGGTTTTGT+GGG + chr2.4:17522155-17522174 None:intergenic 20.0%
!!! AAGTAATGATTGTTTTACTA+TGG - chr2.4:17524651-17524670 MS.gene90360:intron 20.0%
!!! AATTTTTAAAGCATTATCCT+TGG - chr2.4:17524485-17524504 MS.gene90360:intron 20.0%
!!! ACATCAGTTAAATGAATTTT+AGG + chr2.4:17525153-17525172 None:intergenic 20.0%
!!! ATTGATAGTATATAAGGTTT+TGG + chr2.4:17524627-17524646 None:intergenic 20.0%
!!! ATTTTTAAAGCATTATCCTT+GGG - chr2.4:17524486-17524505 MS.gene90360:intron 20.0%
!!! TTCTGAAAATAACTTCATAT+TGG - chr2.4:17525340-17525359 MS.gene90360:CDS 20.0%
!!! TTCTTCATGTTTATTTTTTG+AGG - chr2.4:17522751-17522770 MS.gene90360:intron 20.0%
!!! TTCTTCATTGATAGTATATA+AGG + chr2.4:17524633-17524652 None:intergenic 20.0%
! AACTCAAACTTGAGATTAAA+TGG + chr2.4:17523137-17523156 None:intergenic 25.0%
! AATACATAGAAAAGCCAATT+TGG + chr2.4:17523069-17523088 None:intergenic 25.0%
! AATCCAATTAAAATATTCGG+TGG - chr2.4:17525213-17525232 MS.gene90360:intron 25.0%
! AATTTAAATTGAGCAGAATG+TGG - chr2.4:17523904-17523923 MS.gene90360:CDS 25.0%
! ATAACCAAAATTAAGTTCAC+TGG + chr2.4:17524865-17524884 None:intergenic 25.0%
! ATACATAGAAAAGCCAATTT+GGG + chr2.4:17523068-17523087 None:intergenic 25.0%
! ATACTAAAGCCTATTTGTAA+AGG + chr2.4:17524514-17524533 None:intergenic 25.0%
! ATGGATTCTCATATAAAGTT+GGG + chr2.4:17525251-17525270 None:intergenic 25.0%
! ATTTAAATTGAGCAGAATGT+GGG - chr2.4:17523905-17523924 MS.gene90360:CDS 25.0%
! CAAAAAGAAGAATAAAGAAC+TGG + chr2.4:17523412-17523431 None:intergenic 25.0%
! CAACAACATTTGTAACAAAA+TGG + chr2.4:17522905-17522924 None:intergenic 25.0%
! CTGAGTTATGTATTTGAATA+GGG - chr2.4:17523977-17523996 MS.gene90360:intron 25.0%
! GAAAATTCACTGTTTGTTTA+TGG - chr2.4:17522865-17522884 MS.gene90360:intron 25.0%
! TAATAGCTTAACTAAGTTGT+TGG + chr2.4:17522240-17522259 None:intergenic 25.0%
! TATAATCATAGCAAGGAAAT+TGG + chr2.4:17523368-17523387 None:intergenic 25.0%
! TGAGTTATGTATTTGAATAG+GGG - chr2.4:17523978-17523997 MS.gene90360:intron 25.0%
! TTCACTCAAGTAAAAAACTA+TGG + chr2.4:17524389-17524408 None:intergenic 25.0%
! TTGATGAAAATGTCAAAAGA+GGG + chr2.4:17523561-17523580 None:intergenic 25.0%
! TTTGATGAAAATGTCAAAAG+AGG + chr2.4:17523562-17523581 None:intergenic 25.0%
!! AAAACTTCTTCCTTTTATTG+CGG - chr2.4:17522564-17522583 MS.gene90360:intron 25.0%
!! AATGGATTCTCATATAAAGT+TGG + chr2.4:17525252-17525271 None:intergenic 25.0%
!! AATTCTTTTACTGCACATAA+AGG + chr2.4:17522505-17522524 None:intergenic 25.0%
!! ATTCTTTTACTGCACATAAA+GGG + chr2.4:17522504-17522523 None:intergenic 25.0%
!! CATTTTGTTACAAATGTTGT+TGG - chr2.4:17522903-17522922 MS.gene90360:intron 25.0%
!! TAATCCAGTGAACTTAATTT+TGG - chr2.4:17524858-17524877 MS.gene90360:intron 25.0%
!! TATAATTATGCCAGTTGTTT+TGG - chr2.4:17524359-17524378 MS.gene90360:intron 25.0%
!! TCGTGATATCATATTTCTAT+TGG + chr2.4:17524577-17524596 None:intergenic 25.0%
!! TGATAAAATGACATTGATTG+AGG - chr2.4:17525086-17525105 MS.gene90360:intron 25.0%
!! TTGATAATACGATCTTAGTT+TGG - chr2.4:17523688-17523707 MS.gene90360:intron 25.0%
!!! ATTTTGAAAAAGATGCATAC+TGG - chr2.4:17523581-17523600 MS.gene90360:intron 25.0%
!!! CAAAATATATTTGGGTTTTG+TGG + chr2.4:17522156-17522175 None:intergenic 25.0%
!!! CAATCAATGTCATTTTATCA+AGG + chr2.4:17525086-17525105 None:intergenic 25.0%
!!! GTTAAATTTTTAGTTAGTGC+CGG - chr2.4:17523300-17523319 MS.gene90360:CDS 25.0%
!!! GTTTAAACTTTAAAATCCGT+TGG - chr2.4:17524283-17524302 MS.gene90360:intron 25.0%
!!! TGTTTTGGATTCAAAAGTTA+AGG - chr2.4:17523660-17523679 MS.gene90360:intron 25.0%
!!! TGTTTTTAACCTCTTTATGT+TGG - chr2.4:17525366-17525385 MS.gene90360:CDS 25.0%
!!! TTCACAATTTTCTCTAGTTT+TGG - chr2.4:17523945-17523964 MS.gene90360:intron 25.0%
!!! TTGTTTATTTTGGCTATGTT+TGG - chr2.4:17522214-17522233 MS.gene90360:CDS 25.0%
AAAAGATCTTTATCTCTGGA+TGG - chr2.4:17523254-17523273 MS.gene90360:CDS 30.0%
AAACACTTGTAAGACTGTTT+GGG + chr2.4:17522442-17522461 None:intergenic 30.0%
AACTAGAGAAAATTGTGAAC+AGG + chr2.4:17523944-17523963 None:intergenic 30.0%
AAGAAGCTGAAAACAGTTTA+TGG - chr2.4:17522387-17522406 MS.gene90360:CDS 30.0%
AATCTCTTTCCTTTATGTGA+TGG - chr2.4:17522944-17522963 MS.gene90360:intron 30.0%
ACTGATTATTTGTAAACCAC+TGG - chr2.4:17524692-17524711 MS.gene90360:CDS 30.0%
ACTTGCTTAAGATTAAGAAC+AGG + chr2.4:17523160-17523179 None:intergenic 30.0%
AGTTAAGCTATTATGCTGTA+AGG - chr2.4:17522247-17522266 MS.gene90360:CDS 30.0%
ATCCATTATCCATCACATAA+AGG + chr2.4:17522956-17522975 None:intergenic 30.0%
CAAACAGATGAGAATATTAC+CGG + chr2.4:17523322-17523341 None:intergenic 30.0%
CAATTGAGAAAACAAAAACG+TGG + chr2.4:17524160-17524179 None:intergenic 30.0%
CCTATTCAAATACATAACTC+AGG + chr2.4:17523979-17523998 None:intergenic 30.0%
CCTGAGTTATGTATTTGAAT+AGG - chr2.4:17523976-17523995 MS.gene90360:intron 30.0%
GTTAAGCTATTATGCTGTAA+GGG - chr2.4:17522248-17522267 MS.gene90360:CDS 30.0%
GTTGAATCGAAAGAAACTAA+AGG - chr2.4:17522692-17522711 MS.gene90360:intron 30.0%
TAAACACTTGTAAGACTGTT+TGG + chr2.4:17522443-17522462 None:intergenic 30.0%
TACATAATAATAGCATCCAG+TGG + chr2.4:17524711-17524730 None:intergenic 30.0%
TATAGAACTTCTCAAGTCAA+CGG + chr2.4:17523853-17523872 None:intergenic 30.0%
TCATTGCAAAAAGGATAACA+AGG - chr2.4:17522670-17522689 MS.gene90360:intron 30.0%
TCTAGTCTATTTGTGACATT+TGG - chr2.4:17523179-17523198 MS.gene90360:intron 30.0%
TGTTGAAAACAACAAACCAA+CGG + chr2.4:17524302-17524321 None:intergenic 30.0%
! AAACTTCTTCCTTTTATTGC+GGG - chr2.4:17522565-17522584 MS.gene90360:intron 30.0%
! ATAATACGATCTTAGTTTGG+TGG - chr2.4:17523691-17523710 MS.gene90360:intron 30.0%
! TTGTTATCCTTTTTGCAATG+AGG + chr2.4:17522671-17522690 None:intergenic 30.0%
!! ATTGTTTTACTATGGTTGCA+TGG - chr2.4:17524659-17524678 MS.gene90360:intron 30.0%
!! CAATTGTTGATGACCATATA+TGG - chr2.4:17524174-17524193 MS.gene90360:CDS 30.0%
!! CTCATCTGTTTGTTATCTTA+AGG - chr2.4:17523330-17523349 MS.gene90360:CDS 30.0%
!! GAGTTCGGATTTGTTTATTT+TGG - chr2.4:17522204-17522223 MS.gene90360:CDS 30.0%
!! TTCCTTTATGTGATGGATAA+TGG - chr2.4:17522951-17522970 MS.gene90360:intron 30.0%
!!! GGGTTATTGGTTTTTGATTA+TGG - chr2.4:17522585-17522604 MS.gene90360:intron 30.0%
AAAAATAAGCGCAAGCATCT+TGG - chr2.4:17524335-17524354 MS.gene90360:intron 35.0%
AAACTACCTTGAAGAGCTTA+TGG - chr2.4:17522364-17522383 MS.gene90360:CDS 35.0%
AACATTGCCGATGGATAAAT+TGG - chr2.4:17524446-17524465 MS.gene90360:intron 35.0%
AACCAATAACCCGCAATAAA+AGG + chr2.4:17522577-17522596 None:intergenic 35.0%
AATTTGTCTGACTCATTGTG+AGG + chr2.4:17525051-17525070 None:intergenic 35.0%
ACATTGCCGATGGATAAATT+GGG - chr2.4:17524447-17524466 MS.gene90360:intron 35.0%
AGAAAACAAAAACGTGGTCA+TGG + chr2.4:17524154-17524173 None:intergenic 35.0%
AGAACATAATGGTCATTACC+TGG + chr2.4:17525290-17525309 None:intergenic 35.0%
AGACACAAACCTGGTAATTT+CGG + chr2.4:17524202-17524221 None:intergenic 35.0%
AGGCAAAAGATCTTTATCTC+TGG - chr2.4:17523250-17523269 MS.gene90360:intron 35.0%
ATAATGGTCATTACCTGGTT+TGG + chr2.4:17525285-17525304 None:intergenic 35.0%
ATAGAAAAGCCAATTTGGGA+GGG + chr2.4:17523064-17523083 None:intergenic 35.0%
ATGAAAATGTCAAAAGAGGG+CGG + chr2.4:17523558-17523577 None:intergenic 35.0%
ATTGATTGAGGTCTGCAAAT+TGG - chr2.4:17525098-17525117 MS.gene90360:intron 35.0%
ATTGTCTACACTTCTAGTCT+AGG - chr2.4:17524736-17524755 MS.gene90360:CDS 35.0%
CACAAACCCAATTTATCCAT+CGG + chr2.4:17524456-17524475 None:intergenic 35.0%
CATTCGCAAAAAAATGCAAG+TGG + chr2.4:17524923-17524942 None:intergenic 35.0%
CTACAACAACCAACATAAAG+AGG + chr2.4:17525378-17525397 None:intergenic 35.0%
CTGAAATTCACATACACAGA+AGG + chr2.4:17523223-17523242 None:intergenic 35.0%
GGTAATTTCGGAACCATATA+TGG + chr2.4:17524190-17524209 None:intergenic 35.0%
TATATGGTTCCGAAATTACC+AGG - chr2.4:17524190-17524209 MS.gene90360:CDS 35.0%
TCTGCATGAGAATAAAAACG+TGG + chr2.4:17525020-17525039 None:intergenic 35.0%
TGAAAATGAGAATGAAGTCG+AGG - chr2.4:17522044-17522063 MS.gene90360:CDS 35.0%
TGCAAACTACTTGTTTAGGT+TGG - chr2.4:17525174-17525193 MS.gene90360:intron 35.0%
TGCATACTGGAAACTGTTAA+AGG - chr2.4:17523594-17523613 MS.gene90360:intron 35.0%
TGTGTGCAAACTACTTGTTT+AGG - chr2.4:17525170-17525189 MS.gene90360:intron 35.0%
TTCTCTTTGTTCCTGAATAC+AGG + chr2.4:17522090-17522109 None:intergenic 35.0%
! AGAAATTAGTAAGATGGGCT+CGG + chr2.4:17523463-17523482 None:intergenic 35.0%
! CAGGAACAAAGAGAAAGTTT+TGG - chr2.4:17522095-17522114 MS.gene90360:intron 35.0%
! GTATGATTGATGGATCTACA+GGG - chr2.4:17524819-17524838 MS.gene90360:intron 35.0%
! TACTCTTCTATGCACTGTTT+TGG - chr2.4:17523645-17523664 MS.gene90360:intron 35.0%
! TCATTTTATCAAGGCTTCCT+CGG + chr2.4:17525077-17525096 None:intergenic 35.0%
!! AAAATATTCGGTGGCAGTTT+TGG - chr2.4:17525222-17525241 MS.gene90360:intron 35.0%
!! TTCCTTTTATTGCGGGTTAT+TGG - chr2.4:17522572-17522591 MS.gene90360:intron 35.0%
!!! AAGTTTTGGTTACTTGCTCT+AGG - chr2.4:17522109-17522128 MS.gene90360:intron 35.0%
!!! CTGCCACCGAATATTTTAAT+TGG + chr2.4:17525219-17525238 None:intergenic 35.0%
!!! CTTGCATTTTTTTGCGAATG+TGG - chr2.4:17524923-17524942 MS.gene90360:intron 35.0%
!!! GTCTGTGTTTGTTTTGAGTT+CGG - chr2.4:17522189-17522208 MS.gene90360:CDS 35.0%
AAATTTAACAGACGGACCGT+TGG + chr2.4:17523289-17523308 None:intergenic 40.0%
AAGGAGGAAAATGCATGAGA+TGG - chr2.4:17525460-17525479 MS.gene90360:CDS 40.0%
AATTTAACAGACGGACCGTT+GGG + chr2.4:17523288-17523307 None:intergenic 40.0%
ACAAAAACGTGGTCATGGAA+AGG + chr2.4:17524149-17524168 None:intergenic 40.0%
AGAAGGTCAAAGCAAAGACA+AGG - chr2.4:17525441-17525460 MS.gene90360:CDS 40.0%
AGTGTGCACAGAGAACATAA+TGG + chr2.4:17525301-17525320 None:intergenic 40.0%
ATGGAGGAATTGAAGCTTAC+TGG - chr2.4:17523514-17523533 MS.gene90360:intron 40.0%
ATGTGAATTTCAGTGCAGGA+AGG - chr2.4:17523230-17523249 MS.gene90360:intron 40.0%
ATTATATGTGTCGCCAAACC+AGG - chr2.4:17525269-17525288 MS.gene90360:intron 40.0%
CAATTTGGGAGGGAAAACAA+AGG + chr2.4:17523054-17523073 None:intergenic 40.0%
CACATATCTGCAAACTCATC+AGG + chr2.4:17525500-17525519 None:intergenic 40.0%
CATAGAAAAGCCAATTTGGG+AGG + chr2.4:17523065-17523084 None:intergenic 40.0%
CCAGGTTCAACATCAAATGT+CGG + chr2.4:17522637-17522656 None:intergenic 40.0%
CCTATTTGTAAAGGAACCCA+AGG + chr2.4:17524505-17524524 None:intergenic 40.0%
CCTTCGGAGTTTCAAAAATC+TGG + chr2.4:17524109-17524128 None:intergenic 40.0%
CCTTGGGTTCCTTTACAAAT+AGG - chr2.4:17524502-17524521 MS.gene90360:intron 40.0%
CGCTTTGCAGAAGAAGAAAA+AGG - chr2.4:17525403-17525422 MS.gene90360:CDS 40.0%
CTATGGCTAACCAAAACAAC+TGG + chr2.4:17524372-17524391 None:intergenic 40.0%
CTGATGAGTTTGCAGATATG+TGG - chr2.4:17525498-17525517 MS.gene90360:CDS 40.0%
CTTACTGGGAATCACCTAAA+AGG - chr2.4:17523529-17523548 MS.gene90360:intron 40.0%
CTTATCCTTCCATCCCAAAA+GGG + chr2.4:17522022-17522041 None:intergenic 40.0%
CTTCTTCCATAAGCTCTTCA+AGG + chr2.4:17522373-17522392 None:intergenic 40.0%
GAAGAGAAAACGAAGCGAAA+AGG - chr2.4:17521939-17521958 MS.gene90360:CDS 40.0%
GAGATGCTGTTACAGGTATT+TGG - chr2.4:17523616-17523635 MS.gene90360:intron 40.0%
GTAGATCCATCAATCATACG+TGG + chr2.4:17524818-17524837 None:intergenic 40.0%
GTGTATGTGAATTTCAGTGC+AGG - chr2.4:17523226-17523245 MS.gene90360:intron 40.0%
GTTAAAGGAGATGCTGTTAC+AGG - chr2.4:17523609-17523628 MS.gene90360:intron 40.0%
TCTTATCCTTCCATCCCAAA+AGG + chr2.4:17522023-17522042 None:intergenic 40.0%
TGAAAATGTCAAAAGAGGGC+GGG + chr2.4:17523557-17523576 None:intergenic 40.0%
TGAGAATGAAGTCGAGGTTA+AGG - chr2.4:17522050-17522069 MS.gene90360:intron 40.0%
TGCAAATTCAGACACAAACC+TGG + chr2.4:17524211-17524230 None:intergenic 40.0%
TGGAGGAATTGAAGCTTACT+GGG - chr2.4:17523515-17523534 MS.gene90360:intron 40.0%
TTCTTTGCTAACATTGCCGA+TGG - chr2.4:17524437-17524456 MS.gene90360:intron 40.0%
TTGCAGAAGAAGAAAAAGGC+TGG - chr2.4:17525407-17525426 MS.gene90360:CDS 40.0%
! ATTTTATCAAGGCTTCCTCG+GGG + chr2.4:17525075-17525094 None:intergenic 40.0%
! CATTTTATCAAGGCTTCCTC+GGG + chr2.4:17525076-17525095 None:intergenic 40.0%
! CGTATGATTGATGGATCTAC+AGG - chr2.4:17524818-17524837 MS.gene90360:intron 40.0%
! GCTCTAGGCGTATTGTTTAT+AGG - chr2.4:17522124-17522143 MS.gene90360:intron 40.0%
! GGAGCAACATCTTCCTTTTT+GGG + chr2.4:17521982-17522001 None:intergenic 40.0%
! TGGAGCAACATCTTCCTTTT+TGG + chr2.4:17521983-17522002 None:intergenic 40.0%
! TGGTTTGGCGACACATATAA+TGG + chr2.4:17525270-17525289 None:intergenic 40.0%
! TTAGCCTTTCTATGGTCCTT+CGG + chr2.4:17524125-17524144 None:intergenic 40.0%
! TTTATGTGCGCACTTTTCTG+AGG - chr2.4:17523764-17523783 MS.gene90360:intron 40.0%
!! TACTTGTTTAGGTTGGTCCA+CGG - chr2.4:17525181-17525200 MS.gene90360:intron 40.0%
!!! CCAGATTTTTGAAACTCCGA+AGG - chr2.4:17524106-17524125 MS.gene90360:intron 40.0%
!!! CTTAGTTTGGTGGTGCTTTT+GGG - chr2.4:17523701-17523720 MS.gene90360:intron 40.0%
!!! CTTTGTTTTCCCTCCCAAAT+TGG - chr2.4:17523052-17523071 MS.gene90360:intron 40.0%
!!! GCGCACATGCATTTTTTTCT+TGG - chr2.4:17524019-17524038 MS.gene90360:intron 40.0%
!!! TCTTAGTTTGGTGGTGCTTT+TGG - chr2.4:17523700-17523719 MS.gene90360:intron 40.0%
!!! TTAGTTTGGTGGTGCTTTTG+GGG - chr2.4:17523702-17523721 MS.gene90360:intron 40.0%
AACTCCGAAGGACCATAGAA+AGG - chr2.4:17524118-17524137 MS.gene90360:intron 45.0%
ACGCTACCACGTATGATTGA+TGG - chr2.4:17524809-17524828 MS.gene90360:CDS 45.0%
AGGTCAAAGCAAAGACAAGG+AGG - chr2.4:17525444-17525463 MS.gene90360:CDS 45.0%
ATGGTGCTTCACCTGTATTC+AGG - chr2.4:17522076-17522095 MS.gene90360:intron 45.0%
ATTGGATTCAAGCAGAACCG+TGG + chr2.4:17525201-17525220 None:intergenic 45.0%
ATTTAACAGACGGACCGTTG+GGG + chr2.4:17523287-17523306 None:intergenic 45.0%
CCGACATTTGATGTTGAACC+TGG - chr2.4:17522634-17522653 MS.gene90360:intron 45.0%
GAAGTCGAGGTTAAGGAGAA+TGG - chr2.4:17522057-17522076 MS.gene90360:intron 45.0%
GCAAGACACAAGAGTCAGAT+GGG + chr2.4:17522981-17523000 None:intergenic 45.0%
GCTTCTGCCTCATTGCAAAA+AGG - chr2.4:17522661-17522680 MS.gene90360:intron 45.0%
GGCTGGAACATTTGCAAAGA+AGG - chr2.4:17525424-17525443 MS.gene90360:CDS 45.0%
TGCAAGACACAAGAGTCAGA+TGG + chr2.4:17522982-17523001 None:intergenic 45.0%
TGTGCACTGAAAAGCAGTGA+AGG + chr2.4:17523492-17523511 None:intergenic 45.0%
! AATCATACGTGGTAGCGTCA+TGG + chr2.4:17524807-17524826 None:intergenic 45.0%
! CTGCACATAAAGGGCTTGTT+TGG + chr2.4:17522495-17522514 None:intergenic 45.0%
! CTTTTCAGTGCACACAATGG+AGG - chr2.4:17523498-17523517 MS.gene90360:intron 45.0%
! GGAAAGGCTTAGCCTTTCTA+TGG + chr2.4:17524133-17524152 None:intergenic 45.0%
!! ATATTCGGTGGCAGTTTTGG+AGG - chr2.4:17525225-17525244 MS.gene90360:intron 45.0%
!! CTGCTTTTCAGTGCACACAA+TGG - chr2.4:17523495-17523514 MS.gene90360:intron 45.0%
AAGCGAAAAGGCTGAAGCTG+TGG - chr2.4:17521951-17521970 MS.gene90360:CDS 50.0%
AATGAGGCAGAAGCGATACC+AGG + chr2.4:17522655-17522674 None:intergenic 50.0%
CTCAACAAGCTCGTTCAAGG+TGG + chr2.4:17522720-17522739 None:intergenic 50.0%
GAGCTCAACAAGCTCGTTCA+AGG + chr2.4:17522723-17522742 None:intergenic 50.0%
GAGTCAGACAAATTACCCCG+AGG - chr2.4:17525057-17525076 MS.gene90360:intron 50.0%
TGGATGGCAAAATGCCCCAA+CGG - chr2.4:17523270-17523289 MS.gene90360:CDS 50.0%
! AGACCAGTGAGGACCCTTTT+GGG - chr2.4:17522006-17522025 MS.gene90360:CDS 50.0%
AGCTGTGGCTGTGCCCAAAA+AGG - chr2.4:17521966-17521985 MS.gene90360:CDS 55.0%
CATCCCAAAAGGGTCCTCAC+TGG + chr2.4:17522012-17522031 None:intergenic 55.0%
CTCATCAGGCTCCAGAGGAT+TGG + chr2.4:17525486-17525505 None:intergenic 55.0%
GCAAACTCATCAGGCTCCAG+AGG + chr2.4:17525491-17525510 None:intergenic 55.0%
GCATGAGATGGCCAATCCTC+TGG - chr2.4:17525472-17525491 MS.gene90360:CDS 55.0%
TTGCTCCAGAGAGACCAGTG+AGG - chr2.4:17521995-17522014 MS.gene90360:CDS 55.0%
! AAAGAGGGCGGGAGCCTTTT+AGG + chr2.4:17523546-17523565 None:intergenic 55.0%
! GAGACCAGTGAGGACCCTTT+TGG - chr2.4:17522005-17522024 MS.gene90360:CDS 55.0%
!! CAGTGAGGACCCTTTTGGGA+TGG - chr2.4:17522010-17522029 MS.gene90360:CDS 55.0%
!!! GAGGACCCTTTTGGGATGGA+AGG - chr2.4:17522014-17522033 MS.gene90360:CDS 55.0%
! AGGGTCCTCACTGGTCTCTC+TGG + chr2.4:17522003-17522022 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 17521934 17525529 17521934 ID=MS.gene90360
chr2.4 mRNA 17521934 17525529 17521934 ID=MS.gene90360.t1;Parent=MS.gene90360
chr2.4 exon 17525318 17525529 17525318 ID=MS.gene90360.t1.exon1;Parent=MS.gene90360.t1
chr2.4 CDS 17525318 17525529 17525318 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
chr2.4 exon 17524691 17524832 17524691 ID=MS.gene90360.t1.exon2;Parent=MS.gene90360.t1
chr2.4 CDS 17524691 17524832 17524691 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
chr2.4 exon 17524142 17524220 17524142 ID=MS.gene90360.t1.exon3;Parent=MS.gene90360.t1
chr2.4 CDS 17524142 17524220 17524142 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
chr2.4 exon 17523833 17523957 17523833 ID=MS.gene90360.t1.exon4;Parent=MS.gene90360.t1
chr2.4 CDS 17523833 17523957 17523833 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
chr2.4 exon 17523252 17523353 17523252 ID=MS.gene90360.t1.exon5;Parent=MS.gene90360.t1
chr2.4 CDS 17523252 17523353 17523252 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
chr2.4 exon 17522356 17522424 17522356 ID=MS.gene90360.t1.exon6;Parent=MS.gene90360.t1
chr2.4 CDS 17522356 17522424 17522356 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
chr2.4 exon 17522173 17522271 17522173 ID=MS.gene90360.t1.exon7;Parent=MS.gene90360.t1
chr2.4 CDS 17522173 17522271 17522173 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
chr2.4 exon 17521934 17522065 17521934 ID=MS.gene90360.t1.exon8;Parent=MS.gene90360.t1
chr2.4 CDS 17521934 17522065 17521934 ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1
Gene Sequence

>MS.gene90360

ATGGGGAAGAGAAAACGAAGCGAAAAGGCTGAAGCTGTGGCTGTGCCCAAAAAGGAAGATGTTGCTCCAGAGAGACCAGTGAGGACCCTTTTGGGATGGAAGGATAAGAATGAAAATGAGAATGAAGTCGAGGTTAAGGAGAATGGTGCTTCACCTGTATTCAGGAACAAAGAGAAAGTTTTGGTTACTTGCTCTAGGCGTATTGTTTATAGGTACAACCCACAAAACCCAAATATATTTTGCTGTATTTGCACAGTCTGTGTTTGTTTTGAGTTCGGATTTGTTTATTTTGGCTATGTTTGGCCAACAACTTAGTTAAGCTATTATGCTGTAAGGGTTTATCATGTAAGTGCTTCTTTATAAATTATTTATGTAACAAAAATTAAATTAATGTCAAATGGTTTTGATATAAGCTATAAGTTGTATTCATAAACTACCTTGAAGAGCTTATGGAAGAAGCTGAAAACAGTTTATGGACATGTCATATGTTGTTTCTAGAAGCTGTCCCAAACAGTCTTACAAGTGTTTATTCTTGTAGATAAATTTAAATAATGCAATCCAAACAAGCCCTTTATGTGCAGTAAAAGAATTGTATCAGAATGCTCTTGTTTGTATGATATTAAGTAATAAAAAACTTCTTCCTTTTATTGCGGGTTATTGGTTTTTGATTATGGTATTGATCATAAACTTATTATAGGTACCGACATTTGATGTTGAACCTGGTATCGCTTCTGCCTCATTGCAAAAAGGATAACAAGGTTGAATCGAAAGAAACTAAAGGCGCCACCTTGAACGAGCTTGTTGAGCTCAAAAACTGTTCTTCATGTTTATTTTTTGAGGTATTCCTTTCGATTATTTTTTATGACATTAAGGTTTTTCATTGACAACTATGCATTATGTTTATGAGCTATTCTATGTTGTCGTTGAGTTAGAAAATTCACTGTTTGTTTATGGTGTGAAGAGTTATTCCATTTTGTTACAAATGTTGTTGGTTAGTTTCAAATTGATATAATCTCTTTCCTTTATGTGATGGATAATGGATTACCCATCTGACTCTTGTGTCTTGCAGATTTTTGTTTTATCCATTTTAAATTTTAAAGTGTAGAACACTTTCACTCCTTTGTTTTCCCTCCCAAATTGGCTTTTCTATGTATTTACACAGTTTACTTAATTTAAATCTGGCGGCTGAGACAACATTTTCCATTTAATCTCAAGTTTGAGTTCCTGTTCTTAATCTTAAGCAAGTCTAGTCTATTTGTGACATTTGGATAACTATCTTATATCTACCTTCTGTGTATGTGAATTTCAGTGCAGGAAGGCAAAAGATCTTTATCTCTGGATGGCAAAATGCCCCAACGGTCCGTCTGTTAAATTTTTAGTTAGTGCCGGTAATATTCTCATCTGTTTGTTATCTTAAGGTTACTACATAAACCAATTTCCTTGCTATGATTATATATTATTCTGGTATCAGTAATCCAGTTCTTTATTCTTCTTTTTGAATTATGATCGTCTCTCTTTCATTCTCTCCGAGCCCATCTTACTAATTTCTCTTTTACCTTCACTGCTTTTCAGTGCACACAATGGAGGAATTGAAGCTTACTGGGAATCACCTAAAAGGCTCCCGCCCTCTTTTGACATTTTCATCAAATTTTGAAAAAGATGCATACTGGAAACTGTTAAAGGAGATGCTGTTACAGGTATTTGGTTTGATTACTCTTCTATGCACTGTTTTGGATTCAAAAGTTAAGGTTATTTTGATAATACGATCTTAGTTTGGTGGTGCTTTTGGGGTTTTGCGTTGTATGATTTACTAGTATGATAGAAAGTTGTTTTATGTGCGCACTTTTCTGAGGTATTTGTGATCTTATAGTACAATTGTCATGTATCTATATGCTTAAAAGTATCTTAATCTGTCACCGTTGACTTGAGAAGTTCTATAAATGTTATGTTTGGCTCTTGTCAAAGTTTAAAATTTAAATTGAGCAGAATGTGGGACAAGCATTTATTCCTGTTCACAATTTTCTCTAGTTTTGGTTCTTGTACCTGAGTTATGTATTTGAATAGGGGTGTGAATTGTGTGAGCGTGCGCACATGCATTTTTTTCTTGGTTATTAGAATAATCAAAGTATACACAATTTTGATTATTGCTGATGTAGTCTTTCTTTTCTTTAACCAGATTTTTGAAACTCCGAAGGACCATAGAAAGGCTAAGCCTTTCCATGACCACGTTTTTGTTTTCTCAATTGTTGATGACCATATATGGTTCCGAAATTACCAGGTTTGTGTCTGAATTTGCAAAAGATCTTAATAATTGACATAACATTGTTTTCAAATTTGCATTATTTTAGAGTTTAAACTTTAAAATCCGTTGGTTTGTTGTTTTCAACATCACTCTACTAAAAAAAATAAGCGCAAGCATCTTGGTTATAATTATGCCAGTTGTTTTGGTTAGCCATAGTTTTTTACTTGAGTGAAATTGAGATGACAAATCTAAATGTTCTCTTTCTTTGCTAACATTGCCGATGGATAAATTGGGTTTGTGAGCCTTTCAAATTTTTAAAGCATTATCCTTGGGTTCCTTTACAAATAGGCTTTAGTATATGAAATAAAAATATACTTAAAACAAAATTACTTTGAAGACCAATAGAAATATGATATCACGATGAGTCTAGATTTGATGTAAAATCAAACCAAAACCTTATATACTATCAATGAAGAAGTAATGATTGTTTTACTATGGTTGCATGGAAAGCTTTCAACTGATTATTTGTAAACCACTGGATGCTATTATTATGTAATTACATTGTCTACACTTCTAGTCTAGGAGCAAAGAAAATGCATTCTTCACTTAGATATGCATGTCTTAAACACCATGACGCTACCACGTATGATTGATGGATCTACAGGGTTACTTACTTTTATACTAATCCAGTGAACTTAATTTTGGTTATTTTTTAATGTATAGGTCTTAATAATTTAAACAATGCCACTTGCATTTTTTTGCGAATGTGGCTTTGCAATGCTATTCTCATTTGCTGCTCTATGTTGTCATTGATGCTTACTGAACAATAAAACATAATAAACCACGTTTTTATTCTCATGCAGATCTCTGTTCCTCACAATGAGTCAGACAAATTACCCCGAGGAAGCCTTGATAAAATGACATTGATTGAGGTCTGCAAATTGGCTCATTGATTTATCTTTGATCTGTCAATTCCTAAAATTCATTTAACTGATGTGTGCAAACTACTTGTTTAGGTTGGTCCACGGTTCTGCTTGAATCCAATTAAAATATTCGGTGGCAGTTTTGGAGGCCCAACTTTATATGAGAATCCATTATATGTGTCGCCAAACCAGGTAATGACCATTATGTTCTCTGTGCACACTTATAATCTCCGTAATTTTCTTCTGAAAATAACTTCATATTGGTTGTGTTTTTAACCTCTTTATGTTGGTTGTTGTAGATTCGCGCTTTGCAGAAGAAGAAAAAGGCTGGAACATTTGCAAAGAAGGTCAAAGCAAAGACAAGGAGGAAAATGCATGAGATGGCCAATCCTCTGGAGCCTGATGAGTTTGCAGATATGTGGAAAGATTAA

Protein sequence

>MS.gene90360.t1

MGKRKRSEKAEAVAVPKKEDVAPERPVRTLLGWKDKNENENEVEVKENGASPVFRNKEKVLVTCSRRIVYRYRHLMLNLVSLLPHCKKDNKVESKETKGATLNELVELKNCSSCLFFECRKAKDLYLWMAKCPNGPSVKFLVSAVHTMEELKLTGNHLKGSRPLLTFSSNFEKDAYWKLLKEMLLQIFETPKDHRKAKPFHDHVFVFSIVDDHIWFRNYQISVPHNESDKLPRGSLDKMTLIEVGPRFCLNPIKIFGGSFGGPTLYENPLYVSPNQIRALQKKKKAGTFAKKVKAKTRRKMHEMANPLEPDEFADMWKD