Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90360.t1 | XP_013465818.1 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.50E-176 | 628.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90360.t1 | Q9C928 | 77.0 | 317 | 71 | 1 | 3 | 319 | 4 | 318 | 3.0e-144 | 512.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90360.t1 | A0A072VCY8 | 96.2 | 319 | 10 | 1 | 1 | 319 | 1 | 317 | 1.1e-176 | 628.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene90360 | 0.838937 | 2.14E-57 | -1.69E-46 |
| MS.gene058994 | MS.gene90360 | 0.868888 | 4.67E-66 | -1.69E-46 |
| MS.gene059878 | MS.gene90360 | 0.974621 | 1.77E-138 | -1.69E-46 |
| MS.gene059880 | MS.gene90360 | 0.97975 | 1.17E-148 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90360.t1 | MTR_1g012990 | 98.119 | 319 | 4 | 1 | 1 | 319 | 1 | 317 | 0.0 | 646 |
| MS.gene90360.t1 | MTR_7g069430 | 97.179 | 319 | 5 | 1 | 1 | 319 | 1 | 315 | 0.0 | 638 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene90360.t1 | AT3G15460 | 79.062 | 320 | 60 | 3 | 1 | 319 | 1 | 314 | 0.0 | 523 |
| MS.gene90360.t1 | AT1G52930 | 78.125 | 320 | 67 | 2 | 1 | 319 | 1 | 318 | 0.0 | 504 |
Find 69 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTCTAGGCGTATTGTTTAT+AGG | 0.224171 | 2.4:-17525317 | MS.gene90360:intron |
| CAATTGTTGATGACCATATA+TGG | 0.275985 | 2.4:-17523267 | MS.gene90360:CDS |
| AAAATATTCGGTGGCAGTTT+TGG | 0.276214 | 2.4:-17522219 | MS.gene90360:CDS |
| CGCTTTGCAGAAGAAGAAAA+AGG | 0.301141 | 2.4:-17522038 | MS.gene90360:CDS |
| ATGGAGGAATTGAAGCTTAC+TGG | 0.304877 | 2.4:-17523927 | MS.gene90360:CDS |
| TGGTTTGGCGACACATATAA+TGG | 0.307289 | 2.4:+17522174 | None:intergenic |
| GAGACCAGTGAGGACCCTTT+TGG | 0.316595 | 2.4:-17525436 | MS.gene90360:CDS |
| GGTAATTTCGGAACCATATA+TGG | 0.326418 | 2.4:+17523254 | None:intergenic |
| TGCATACTGGAAACTGTTAA+AGG | 0.335855 | 2.4:-17523847 | MS.gene90360:CDS |
| AGACACAAACCTGGTAATTT+CGG | 0.336053 | 2.4:+17523242 | None:intergenic |
| TTGAATCCAATTAAAATATT+CGG | 0.338246 | 2.4:-17522231 | MS.gene90360:CDS |
| TGAGAATGAAGTCGAGGTTA+AGG | 0.351881 | 2.4:-17525391 | MS.gene90360:CDS |
| GTTAAAGGAGATGCTGTTAC+AGG | 0.353959 | 2.4:-17523832 | MS.gene90360:intron |
| TTCTCTTTGTTCCTGAATAC+AGG | 0.355373 | 2.4:+17525354 | None:intergenic |
| ATGGTGCTTCACCTGTATTC+AGG | 0.357859 | 2.4:-17525365 | MS.gene90360:CDS |
| GCTTCTGCCTCATTGCAAAA+AGG | 0.366733 | 2.4:-17524780 | MS.gene90360:CDS |
| CTTACTGGGAATCACCTAAA+AGG | 0.369692 | 2.4:-17523912 | MS.gene90360:CDS |
| AGGGTCCTCACTGGTCTCTC+TGG | 0.383639 | 2.4:+17525441 | None:intergenic |
| GGAAAGGCTTAGCCTTTCTA+TGG | 0.386528 | 2.4:+17523311 | None:intergenic |
| ATAATGGTCATTACCTGGTT+TGG | 0.399636 | 2.4:+17522159 | None:intergenic |
| CAGGAACAAAGAGAAAGTTT+TGG | 0.404050 | 2.4:-17525346 | MS.gene90360:CDS |
| AATTTAACAGACGGACCGTT+GGG | 0.405139 | 2.4:+17524156 | None:intergenic |
| AGCTGTGGCTGTGCCCAAAA+AGG | 0.410300 | 2.4:-17525475 | MS.gene90360:CDS |
| CACATATCTGCAAACTCATC+AGG | 0.414305 | 2.4:+17521944 | None:intergenic |
| TTAGCCTTTCTATGGTCCTT+CGG | 0.432964 | 2.4:+17523319 | None:intergenic |
| GAGCTCAACAAGCTCGTTCA+AGG | 0.438472 | 2.4:+17524721 | None:intergenic |
| GGCTGGAACATTTGCAAAGA+AGG | 0.442018 | 2.4:-17522017 | MS.gene90360:CDS |
| AATGGATTCTCATATAAAGT+TGG | 0.442109 | 2.4:+17522192 | None:intergenic |
| TCTTATCCTTCCATCCCAAA+AGG | 0.448553 | 2.4:+17525421 | None:intergenic |
| GCATGAGATGGCCAATCCTC+TGG | 0.463080 | 2.4:-17521969 | MS.gene90360:CDS |
| ATGGATTCTCATATAAAGTT+GGG | 0.466075 | 2.4:+17522193 | None:intergenic |
| AGGCAAAAGATCTTTATCTC+TGG | 0.470351 | 2.4:-17524191 | MS.gene90360:CDS |
| TGATAAAATGACATTGATTG+AGG | 0.479641 | 2.4:-17522355 | MS.gene90360:intron |
| CTCATCAGGCTCCAGAGGAT+TGG | 0.500537 | 2.4:+17521958 | None:intergenic |
| CCGACATTTGATGTTGAACC+TGG | 0.503744 | 2.4:-17524807 | MS.gene90360:CDS |
| TTTGATGAAAATGTCAAAAG+AGG | 0.513130 | 2.4:+17523882 | None:intergenic |
| TATATGGTTCCGAAATTACC+AGG | 0.519157 | 2.4:-17523251 | MS.gene90360:intron |
| TGGAGGAATTGAAGCTTACT+GGG | 0.524362 | 2.4:-17523926 | MS.gene90360:CDS |
| CTTATCCTTCCATCCCAAAA+GGG | 0.530204 | 2.4:+17525422 | None:intergenic |
| ATTATATGTGTCGCCAAACC+AGG | 0.539453 | 2.4:-17522172 | MS.gene90360:intron |
| AAATTTAACAGACGGACCGT+TGG | 0.547683 | 2.4:+17524155 | None:intergenic |
| AATGAGGCAGAAGCGATACC+AGG | 0.551260 | 2.4:+17524789 | None:intergenic |
| CATCCCAAAAGGGTCCTCAC+TGG | 0.551306 | 2.4:+17525432 | None:intergenic |
| GAAGTCGAGGTTAAGGAGAA+TGG | 0.558717 | 2.4:-17525384 | MS.gene90360:CDS |
| GAAGAGAAAACGAAGCGAAA+AGG | 0.560289 | 2.4:-17525502 | MS.gene90360:CDS |
| AAAAGATCTTTATCTCTGGA+TGG | 0.569362 | 2.4:-17524187 | MS.gene90360:CDS |
| TTGATGAAAATGTCAAAAGA+GGG | 0.581244 | 2.4:+17523883 | None:intergenic |
| AATCCAATTAAAATATTCGG+TGG | 0.581638 | 2.4:-17522228 | MS.gene90360:CDS |
| GCAAACTCATCAGGCTCCAG+AGG | 0.583650 | 2.4:+17521953 | None:intergenic |
| AAGGAGGAAAATGCATGAGA+TGG | 0.589573 | 2.4:-17521981 | MS.gene90360:CDS |
| GTTGAATCGAAAGAAACTAA+AGG | 0.591875 | 2.4:-17524749 | MS.gene90360:CDS |
| AACTCCGAAGGACCATAGAA+AGG | 0.592135 | 2.4:-17523323 | MS.gene90360:CDS |
| TGAAAATGTCAAAAGAGGGC+GGG | 0.598198 | 2.4:+17523887 | None:intergenic |
| TACTTGTTTAGGTTGGTCCA+CGG | 0.602021 | 2.4:-17522260 | MS.gene90360:intron |
| CTGATGAGTTTGCAGATATG+TGG | 0.604261 | 2.4:-17521943 | MS.gene90360:CDS |
| AAGCGAAAAGGCTGAAGCTG+TGG | 0.609947 | 2.4:-17525490 | MS.gene90360:CDS |
| AGAAGGTCAAAGCAAAGACA+AGG | 0.616949 | 2.4:-17522000 | MS.gene90360:CDS |
| AATTTGTCTGACTCATTGTG+AGG | 0.622655 | 2.4:+17522393 | None:intergenic |
| TGAAAATGAGAATGAAGTCG+AGG | 0.626692 | 2.4:-17525397 | MS.gene90360:CDS |
| ATTGGATTCAAGCAGAACCG+TGG | 0.628585 | 2.4:+17522243 | None:intergenic |
| ATGAAAATGTCAAAAGAGGG+CGG | 0.629935 | 2.4:+17523886 | None:intergenic |
| AGGTCAAAGCAAAGACAAGG+AGG | 0.640567 | 2.4:-17521997 | MS.gene90360:CDS |
| TGGATGGCAAAATGCCCCAA+CGG | 0.651109 | 2.4:-17524171 | MS.gene90360:CDS |
| ATGTGAATTTCAGTGCAGGA+AGG | 0.660599 | 2.4:-17524211 | MS.gene90360:intron |
| CCAGGTTCAACATCAAATGT+CGG | 0.661077 | 2.4:+17524807 | None:intergenic |
| ATTTAACAGACGGACCGTTG+GGG | 0.668767 | 2.4:+17524157 | None:intergenic |
| CTCAACAAGCTCGTTCAAGG+TGG | 0.686995 | 2.4:+17524724 | None:intergenic |
| TTGCTCCAGAGAGACCAGTG+AGG | 0.749614 | 2.4:-17525446 | MS.gene90360:CDS |
| GAGTCAGACAAATTACCCCG+AGG | 0.769107 | 2.4:-17522384 | MS.gene90360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAATTAATGTCAAA+TGG | - | chr2.4:17522312-17522331 | MS.gene90360:intron | 10.0% |
| !! | AAATACAGCAAAATATATTT+GGG | + | chr2.4:17522164-17522183 | None:intergenic | 15.0% |
| !! | AATAATATATAATCATAGCA+AGG | + | chr2.4:17523375-17523394 | None:intergenic | 15.0% |
| !! | ATTGATCATAAACTTATTAT+AGG | - | chr2.4:17522609-17522628 | MS.gene90360:intron | 15.0% |
| !! | TTGAATCCAATTAAAATATT+CGG | - | chr2.4:17525210-17525229 | MS.gene90360:intron | 15.0% |
| !!! | CTACACTTTAAAATTTAAAA+TGG | + | chr2.4:17523019-17523038 | None:intergenic | 15.0% |
| !!! | GATTATTTTTTATGACATTA+AGG | - | chr2.4:17522784-17522803 | MS.gene90360:intron | 15.0% |
| !!! | TAATGCTTTAAAAATTTGAA+AGG | + | chr2.4:17524481-17524500 | None:intergenic | 15.0% |
| !!! | TTATTTTCAGAAGAAAATTA+CGG | + | chr2.4:17525332-17525351 | None:intergenic | 15.0% |
| !!! | TTGGTTATTTTTTAATGTAT+AGG | - | chr2.4:17524877-17524896 | MS.gene90360:intron | 15.0% |
| !! | AAAAGAGAAATTAGTAAGAT+GGG | + | chr2.4:17523468-17523487 | None:intergenic | 20.0% |
| !! | AGTTCTATAAATGTTATGTT+TGG | - | chr2.4:17523864-17523883 | MS.gene90360:CDS | 20.0% |
| !! | CAAATACAGCAAAATATATT+TGG | + | chr2.4:17522165-17522184 | None:intergenic | 20.0% |
| !! | CAGTTTACTTAATTTAAATC+TGG | - | chr2.4:17523093-17523112 | MS.gene90360:intron | 20.0% |
| !! | CTAACTAAAAATTTAACAGA+CGG | + | chr2.4:17523297-17523316 | None:intergenic | 20.0% |
| !! | GCTATGATTATATATTATTC+TGG | - | chr2.4:17523376-17523395 | MS.gene90360:intron | 20.0% |
| !! | TAAAAGAGAAATTAGTAAGA+TGG | + | chr2.4:17523469-17523488 | None:intergenic | 20.0% |
| !! | TGTCATAAAAAATAATCGAA+AGG | + | chr2.4:17522781-17522800 | None:intergenic | 20.0% |
| !! | TTTACTTAATTTAAATCTGG+CGG | - | chr2.4:17523096-17523115 | MS.gene90360:intron | 20.0% |
| !!! | AAAATATATTTGGGTTTTGT+GGG | + | chr2.4:17522155-17522174 | None:intergenic | 20.0% |
| !!! | AAGTAATGATTGTTTTACTA+TGG | - | chr2.4:17524651-17524670 | MS.gene90360:intron | 20.0% |
| !!! | AATTTTTAAAGCATTATCCT+TGG | - | chr2.4:17524485-17524504 | MS.gene90360:intron | 20.0% |
| !!! | ACATCAGTTAAATGAATTTT+AGG | + | chr2.4:17525153-17525172 | None:intergenic | 20.0% |
| !!! | ATTGATAGTATATAAGGTTT+TGG | + | chr2.4:17524627-17524646 | None:intergenic | 20.0% |
| !!! | ATTTTTAAAGCATTATCCTT+GGG | - | chr2.4:17524486-17524505 | MS.gene90360:intron | 20.0% |
| !!! | TTCTGAAAATAACTTCATAT+TGG | - | chr2.4:17525340-17525359 | MS.gene90360:CDS | 20.0% |
| !!! | TTCTTCATGTTTATTTTTTG+AGG | - | chr2.4:17522751-17522770 | MS.gene90360:intron | 20.0% |
| !!! | TTCTTCATTGATAGTATATA+AGG | + | chr2.4:17524633-17524652 | None:intergenic | 20.0% |
| ! | AACTCAAACTTGAGATTAAA+TGG | + | chr2.4:17523137-17523156 | None:intergenic | 25.0% |
| ! | AATACATAGAAAAGCCAATT+TGG | + | chr2.4:17523069-17523088 | None:intergenic | 25.0% |
| ! | AATCCAATTAAAATATTCGG+TGG | - | chr2.4:17525213-17525232 | MS.gene90360:intron | 25.0% |
| ! | AATTTAAATTGAGCAGAATG+TGG | - | chr2.4:17523904-17523923 | MS.gene90360:CDS | 25.0% |
| ! | ATAACCAAAATTAAGTTCAC+TGG | + | chr2.4:17524865-17524884 | None:intergenic | 25.0% |
| ! | ATACATAGAAAAGCCAATTT+GGG | + | chr2.4:17523068-17523087 | None:intergenic | 25.0% |
| ! | ATACTAAAGCCTATTTGTAA+AGG | + | chr2.4:17524514-17524533 | None:intergenic | 25.0% |
| ! | ATGGATTCTCATATAAAGTT+GGG | + | chr2.4:17525251-17525270 | None:intergenic | 25.0% |
| ! | ATTTAAATTGAGCAGAATGT+GGG | - | chr2.4:17523905-17523924 | MS.gene90360:CDS | 25.0% |
| ! | CAAAAAGAAGAATAAAGAAC+TGG | + | chr2.4:17523412-17523431 | None:intergenic | 25.0% |
| ! | CAACAACATTTGTAACAAAA+TGG | + | chr2.4:17522905-17522924 | None:intergenic | 25.0% |
| ! | CTGAGTTATGTATTTGAATA+GGG | - | chr2.4:17523977-17523996 | MS.gene90360:intron | 25.0% |
| ! | GAAAATTCACTGTTTGTTTA+TGG | - | chr2.4:17522865-17522884 | MS.gene90360:intron | 25.0% |
| ! | TAATAGCTTAACTAAGTTGT+TGG | + | chr2.4:17522240-17522259 | None:intergenic | 25.0% |
| ! | TATAATCATAGCAAGGAAAT+TGG | + | chr2.4:17523368-17523387 | None:intergenic | 25.0% |
| ! | TGAGTTATGTATTTGAATAG+GGG | - | chr2.4:17523978-17523997 | MS.gene90360:intron | 25.0% |
| ! | TTCACTCAAGTAAAAAACTA+TGG | + | chr2.4:17524389-17524408 | None:intergenic | 25.0% |
| ! | TTGATGAAAATGTCAAAAGA+GGG | + | chr2.4:17523561-17523580 | None:intergenic | 25.0% |
| ! | TTTGATGAAAATGTCAAAAG+AGG | + | chr2.4:17523562-17523581 | None:intergenic | 25.0% |
| !! | AAAACTTCTTCCTTTTATTG+CGG | - | chr2.4:17522564-17522583 | MS.gene90360:intron | 25.0% |
| !! | AATGGATTCTCATATAAAGT+TGG | + | chr2.4:17525252-17525271 | None:intergenic | 25.0% |
| !! | AATTCTTTTACTGCACATAA+AGG | + | chr2.4:17522505-17522524 | None:intergenic | 25.0% |
| !! | ATTCTTTTACTGCACATAAA+GGG | + | chr2.4:17522504-17522523 | None:intergenic | 25.0% |
| !! | CATTTTGTTACAAATGTTGT+TGG | - | chr2.4:17522903-17522922 | MS.gene90360:intron | 25.0% |
| !! | TAATCCAGTGAACTTAATTT+TGG | - | chr2.4:17524858-17524877 | MS.gene90360:intron | 25.0% |
| !! | TATAATTATGCCAGTTGTTT+TGG | - | chr2.4:17524359-17524378 | MS.gene90360:intron | 25.0% |
| !! | TCGTGATATCATATTTCTAT+TGG | + | chr2.4:17524577-17524596 | None:intergenic | 25.0% |
| !! | TGATAAAATGACATTGATTG+AGG | - | chr2.4:17525086-17525105 | MS.gene90360:intron | 25.0% |
| !! | TTGATAATACGATCTTAGTT+TGG | - | chr2.4:17523688-17523707 | MS.gene90360:intron | 25.0% |
| !!! | ATTTTGAAAAAGATGCATAC+TGG | - | chr2.4:17523581-17523600 | MS.gene90360:intron | 25.0% |
| !!! | CAAAATATATTTGGGTTTTG+TGG | + | chr2.4:17522156-17522175 | None:intergenic | 25.0% |
| !!! | CAATCAATGTCATTTTATCA+AGG | + | chr2.4:17525086-17525105 | None:intergenic | 25.0% |
| !!! | GTTAAATTTTTAGTTAGTGC+CGG | - | chr2.4:17523300-17523319 | MS.gene90360:CDS | 25.0% |
| !!! | GTTTAAACTTTAAAATCCGT+TGG | - | chr2.4:17524283-17524302 | MS.gene90360:intron | 25.0% |
| !!! | TGTTTTGGATTCAAAAGTTA+AGG | - | chr2.4:17523660-17523679 | MS.gene90360:intron | 25.0% |
| !!! | TGTTTTTAACCTCTTTATGT+TGG | - | chr2.4:17525366-17525385 | MS.gene90360:CDS | 25.0% |
| !!! | TTCACAATTTTCTCTAGTTT+TGG | - | chr2.4:17523945-17523964 | MS.gene90360:intron | 25.0% |
| !!! | TTGTTTATTTTGGCTATGTT+TGG | - | chr2.4:17522214-17522233 | MS.gene90360:CDS | 25.0% |
| AAAAGATCTTTATCTCTGGA+TGG | - | chr2.4:17523254-17523273 | MS.gene90360:CDS | 30.0% | |
| AAACACTTGTAAGACTGTTT+GGG | + | chr2.4:17522442-17522461 | None:intergenic | 30.0% | |
| AACTAGAGAAAATTGTGAAC+AGG | + | chr2.4:17523944-17523963 | None:intergenic | 30.0% | |
| AAGAAGCTGAAAACAGTTTA+TGG | - | chr2.4:17522387-17522406 | MS.gene90360:CDS | 30.0% | |
| AATCTCTTTCCTTTATGTGA+TGG | - | chr2.4:17522944-17522963 | MS.gene90360:intron | 30.0% | |
| ACTGATTATTTGTAAACCAC+TGG | - | chr2.4:17524692-17524711 | MS.gene90360:CDS | 30.0% | |
| ACTTGCTTAAGATTAAGAAC+AGG | + | chr2.4:17523160-17523179 | None:intergenic | 30.0% | |
| AGTTAAGCTATTATGCTGTA+AGG | - | chr2.4:17522247-17522266 | MS.gene90360:CDS | 30.0% | |
| ATCCATTATCCATCACATAA+AGG | + | chr2.4:17522956-17522975 | None:intergenic | 30.0% | |
| CAAACAGATGAGAATATTAC+CGG | + | chr2.4:17523322-17523341 | None:intergenic | 30.0% | |
| CAATTGAGAAAACAAAAACG+TGG | + | chr2.4:17524160-17524179 | None:intergenic | 30.0% | |
| CCTATTCAAATACATAACTC+AGG | + | chr2.4:17523979-17523998 | None:intergenic | 30.0% | |
| CCTGAGTTATGTATTTGAAT+AGG | - | chr2.4:17523976-17523995 | MS.gene90360:intron | 30.0% | |
| GTTAAGCTATTATGCTGTAA+GGG | - | chr2.4:17522248-17522267 | MS.gene90360:CDS | 30.0% | |
| GTTGAATCGAAAGAAACTAA+AGG | - | chr2.4:17522692-17522711 | MS.gene90360:intron | 30.0% | |
| TAAACACTTGTAAGACTGTT+TGG | + | chr2.4:17522443-17522462 | None:intergenic | 30.0% | |
| TACATAATAATAGCATCCAG+TGG | + | chr2.4:17524711-17524730 | None:intergenic | 30.0% | |
| TATAGAACTTCTCAAGTCAA+CGG | + | chr2.4:17523853-17523872 | None:intergenic | 30.0% | |
| TCATTGCAAAAAGGATAACA+AGG | - | chr2.4:17522670-17522689 | MS.gene90360:intron | 30.0% | |
| TCTAGTCTATTTGTGACATT+TGG | - | chr2.4:17523179-17523198 | MS.gene90360:intron | 30.0% | |
| TGTTGAAAACAACAAACCAA+CGG | + | chr2.4:17524302-17524321 | None:intergenic | 30.0% | |
| ! | AAACTTCTTCCTTTTATTGC+GGG | - | chr2.4:17522565-17522584 | MS.gene90360:intron | 30.0% |
| ! | ATAATACGATCTTAGTTTGG+TGG | - | chr2.4:17523691-17523710 | MS.gene90360:intron | 30.0% |
| ! | TTGTTATCCTTTTTGCAATG+AGG | + | chr2.4:17522671-17522690 | None:intergenic | 30.0% |
| !! | ATTGTTTTACTATGGTTGCA+TGG | - | chr2.4:17524659-17524678 | MS.gene90360:intron | 30.0% |
| !! | CAATTGTTGATGACCATATA+TGG | - | chr2.4:17524174-17524193 | MS.gene90360:CDS | 30.0% |
| !! | CTCATCTGTTTGTTATCTTA+AGG | - | chr2.4:17523330-17523349 | MS.gene90360:CDS | 30.0% |
| !! | GAGTTCGGATTTGTTTATTT+TGG | - | chr2.4:17522204-17522223 | MS.gene90360:CDS | 30.0% |
| !! | TTCCTTTATGTGATGGATAA+TGG | - | chr2.4:17522951-17522970 | MS.gene90360:intron | 30.0% |
| !!! | GGGTTATTGGTTTTTGATTA+TGG | - | chr2.4:17522585-17522604 | MS.gene90360:intron | 30.0% |
| AAAAATAAGCGCAAGCATCT+TGG | - | chr2.4:17524335-17524354 | MS.gene90360:intron | 35.0% | |
| AAACTACCTTGAAGAGCTTA+TGG | - | chr2.4:17522364-17522383 | MS.gene90360:CDS | 35.0% | |
| AACATTGCCGATGGATAAAT+TGG | - | chr2.4:17524446-17524465 | MS.gene90360:intron | 35.0% | |
| AACCAATAACCCGCAATAAA+AGG | + | chr2.4:17522577-17522596 | None:intergenic | 35.0% | |
| AATTTGTCTGACTCATTGTG+AGG | + | chr2.4:17525051-17525070 | None:intergenic | 35.0% | |
| ACATTGCCGATGGATAAATT+GGG | - | chr2.4:17524447-17524466 | MS.gene90360:intron | 35.0% | |
| AGAAAACAAAAACGTGGTCA+TGG | + | chr2.4:17524154-17524173 | None:intergenic | 35.0% | |
| AGAACATAATGGTCATTACC+TGG | + | chr2.4:17525290-17525309 | None:intergenic | 35.0% | |
| AGACACAAACCTGGTAATTT+CGG | + | chr2.4:17524202-17524221 | None:intergenic | 35.0% | |
| AGGCAAAAGATCTTTATCTC+TGG | - | chr2.4:17523250-17523269 | MS.gene90360:intron | 35.0% | |
| ATAATGGTCATTACCTGGTT+TGG | + | chr2.4:17525285-17525304 | None:intergenic | 35.0% | |
| ATAGAAAAGCCAATTTGGGA+GGG | + | chr2.4:17523064-17523083 | None:intergenic | 35.0% | |
| ATGAAAATGTCAAAAGAGGG+CGG | + | chr2.4:17523558-17523577 | None:intergenic | 35.0% | |
| ATTGATTGAGGTCTGCAAAT+TGG | - | chr2.4:17525098-17525117 | MS.gene90360:intron | 35.0% | |
| ATTGTCTACACTTCTAGTCT+AGG | - | chr2.4:17524736-17524755 | MS.gene90360:CDS | 35.0% | |
| CACAAACCCAATTTATCCAT+CGG | + | chr2.4:17524456-17524475 | None:intergenic | 35.0% | |
| CATTCGCAAAAAAATGCAAG+TGG | + | chr2.4:17524923-17524942 | None:intergenic | 35.0% | |
| CTACAACAACCAACATAAAG+AGG | + | chr2.4:17525378-17525397 | None:intergenic | 35.0% | |
| CTGAAATTCACATACACAGA+AGG | + | chr2.4:17523223-17523242 | None:intergenic | 35.0% | |
| GGTAATTTCGGAACCATATA+TGG | + | chr2.4:17524190-17524209 | None:intergenic | 35.0% | |
| TATATGGTTCCGAAATTACC+AGG | - | chr2.4:17524190-17524209 | MS.gene90360:CDS | 35.0% | |
| TCTGCATGAGAATAAAAACG+TGG | + | chr2.4:17525020-17525039 | None:intergenic | 35.0% | |
| TGAAAATGAGAATGAAGTCG+AGG | - | chr2.4:17522044-17522063 | MS.gene90360:CDS | 35.0% | |
| TGCAAACTACTTGTTTAGGT+TGG | - | chr2.4:17525174-17525193 | MS.gene90360:intron | 35.0% | |
| TGCATACTGGAAACTGTTAA+AGG | - | chr2.4:17523594-17523613 | MS.gene90360:intron | 35.0% | |
| TGTGTGCAAACTACTTGTTT+AGG | - | chr2.4:17525170-17525189 | MS.gene90360:intron | 35.0% | |
| TTCTCTTTGTTCCTGAATAC+AGG | + | chr2.4:17522090-17522109 | None:intergenic | 35.0% | |
| ! | AGAAATTAGTAAGATGGGCT+CGG | + | chr2.4:17523463-17523482 | None:intergenic | 35.0% |
| ! | CAGGAACAAAGAGAAAGTTT+TGG | - | chr2.4:17522095-17522114 | MS.gene90360:intron | 35.0% |
| ! | GTATGATTGATGGATCTACA+GGG | - | chr2.4:17524819-17524838 | MS.gene90360:intron | 35.0% |
| ! | TACTCTTCTATGCACTGTTT+TGG | - | chr2.4:17523645-17523664 | MS.gene90360:intron | 35.0% |
| ! | TCATTTTATCAAGGCTTCCT+CGG | + | chr2.4:17525077-17525096 | None:intergenic | 35.0% |
| !! | AAAATATTCGGTGGCAGTTT+TGG | - | chr2.4:17525222-17525241 | MS.gene90360:intron | 35.0% |
| !! | TTCCTTTTATTGCGGGTTAT+TGG | - | chr2.4:17522572-17522591 | MS.gene90360:intron | 35.0% |
| !!! | AAGTTTTGGTTACTTGCTCT+AGG | - | chr2.4:17522109-17522128 | MS.gene90360:intron | 35.0% |
| !!! | CTGCCACCGAATATTTTAAT+TGG | + | chr2.4:17525219-17525238 | None:intergenic | 35.0% |
| !!! | CTTGCATTTTTTTGCGAATG+TGG | - | chr2.4:17524923-17524942 | MS.gene90360:intron | 35.0% |
| !!! | GTCTGTGTTTGTTTTGAGTT+CGG | - | chr2.4:17522189-17522208 | MS.gene90360:CDS | 35.0% |
| AAATTTAACAGACGGACCGT+TGG | + | chr2.4:17523289-17523308 | None:intergenic | 40.0% | |
| AAGGAGGAAAATGCATGAGA+TGG | - | chr2.4:17525460-17525479 | MS.gene90360:CDS | 40.0% | |
| AATTTAACAGACGGACCGTT+GGG | + | chr2.4:17523288-17523307 | None:intergenic | 40.0% | |
| ACAAAAACGTGGTCATGGAA+AGG | + | chr2.4:17524149-17524168 | None:intergenic | 40.0% | |
| AGAAGGTCAAAGCAAAGACA+AGG | - | chr2.4:17525441-17525460 | MS.gene90360:CDS | 40.0% | |
| AGTGTGCACAGAGAACATAA+TGG | + | chr2.4:17525301-17525320 | None:intergenic | 40.0% | |
| ATGGAGGAATTGAAGCTTAC+TGG | - | chr2.4:17523514-17523533 | MS.gene90360:intron | 40.0% | |
| ATGTGAATTTCAGTGCAGGA+AGG | - | chr2.4:17523230-17523249 | MS.gene90360:intron | 40.0% | |
| ATTATATGTGTCGCCAAACC+AGG | - | chr2.4:17525269-17525288 | MS.gene90360:intron | 40.0% | |
| CAATTTGGGAGGGAAAACAA+AGG | + | chr2.4:17523054-17523073 | None:intergenic | 40.0% | |
| CACATATCTGCAAACTCATC+AGG | + | chr2.4:17525500-17525519 | None:intergenic | 40.0% | |
| CATAGAAAAGCCAATTTGGG+AGG | + | chr2.4:17523065-17523084 | None:intergenic | 40.0% | |
| CCAGGTTCAACATCAAATGT+CGG | + | chr2.4:17522637-17522656 | None:intergenic | 40.0% | |
| CCTATTTGTAAAGGAACCCA+AGG | + | chr2.4:17524505-17524524 | None:intergenic | 40.0% | |
| CCTTCGGAGTTTCAAAAATC+TGG | + | chr2.4:17524109-17524128 | None:intergenic | 40.0% | |
| CCTTGGGTTCCTTTACAAAT+AGG | - | chr2.4:17524502-17524521 | MS.gene90360:intron | 40.0% | |
| CGCTTTGCAGAAGAAGAAAA+AGG | - | chr2.4:17525403-17525422 | MS.gene90360:CDS | 40.0% | |
| CTATGGCTAACCAAAACAAC+TGG | + | chr2.4:17524372-17524391 | None:intergenic | 40.0% | |
| CTGATGAGTTTGCAGATATG+TGG | - | chr2.4:17525498-17525517 | MS.gene90360:CDS | 40.0% | |
| CTTACTGGGAATCACCTAAA+AGG | - | chr2.4:17523529-17523548 | MS.gene90360:intron | 40.0% | |
| CTTATCCTTCCATCCCAAAA+GGG | + | chr2.4:17522022-17522041 | None:intergenic | 40.0% | |
| CTTCTTCCATAAGCTCTTCA+AGG | + | chr2.4:17522373-17522392 | None:intergenic | 40.0% | |
| GAAGAGAAAACGAAGCGAAA+AGG | - | chr2.4:17521939-17521958 | MS.gene90360:CDS | 40.0% | |
| GAGATGCTGTTACAGGTATT+TGG | - | chr2.4:17523616-17523635 | MS.gene90360:intron | 40.0% | |
| GTAGATCCATCAATCATACG+TGG | + | chr2.4:17524818-17524837 | None:intergenic | 40.0% | |
| GTGTATGTGAATTTCAGTGC+AGG | - | chr2.4:17523226-17523245 | MS.gene90360:intron | 40.0% | |
| GTTAAAGGAGATGCTGTTAC+AGG | - | chr2.4:17523609-17523628 | MS.gene90360:intron | 40.0% | |
| TCTTATCCTTCCATCCCAAA+AGG | + | chr2.4:17522023-17522042 | None:intergenic | 40.0% | |
| TGAAAATGTCAAAAGAGGGC+GGG | + | chr2.4:17523557-17523576 | None:intergenic | 40.0% | |
| TGAGAATGAAGTCGAGGTTA+AGG | - | chr2.4:17522050-17522069 | MS.gene90360:intron | 40.0% | |
| TGCAAATTCAGACACAAACC+TGG | + | chr2.4:17524211-17524230 | None:intergenic | 40.0% | |
| TGGAGGAATTGAAGCTTACT+GGG | - | chr2.4:17523515-17523534 | MS.gene90360:intron | 40.0% | |
| TTCTTTGCTAACATTGCCGA+TGG | - | chr2.4:17524437-17524456 | MS.gene90360:intron | 40.0% | |
| TTGCAGAAGAAGAAAAAGGC+TGG | - | chr2.4:17525407-17525426 | MS.gene90360:CDS | 40.0% | |
| ! | ATTTTATCAAGGCTTCCTCG+GGG | + | chr2.4:17525075-17525094 | None:intergenic | 40.0% |
| ! | CATTTTATCAAGGCTTCCTC+GGG | + | chr2.4:17525076-17525095 | None:intergenic | 40.0% |
| ! | CGTATGATTGATGGATCTAC+AGG | - | chr2.4:17524818-17524837 | MS.gene90360:intron | 40.0% |
| ! | GCTCTAGGCGTATTGTTTAT+AGG | - | chr2.4:17522124-17522143 | MS.gene90360:intron | 40.0% |
| ! | GGAGCAACATCTTCCTTTTT+GGG | + | chr2.4:17521982-17522001 | None:intergenic | 40.0% |
| ! | TGGAGCAACATCTTCCTTTT+TGG | + | chr2.4:17521983-17522002 | None:intergenic | 40.0% |
| ! | TGGTTTGGCGACACATATAA+TGG | + | chr2.4:17525270-17525289 | None:intergenic | 40.0% |
| ! | TTAGCCTTTCTATGGTCCTT+CGG | + | chr2.4:17524125-17524144 | None:intergenic | 40.0% |
| ! | TTTATGTGCGCACTTTTCTG+AGG | - | chr2.4:17523764-17523783 | MS.gene90360:intron | 40.0% |
| !! | TACTTGTTTAGGTTGGTCCA+CGG | - | chr2.4:17525181-17525200 | MS.gene90360:intron | 40.0% |
| !!! | CCAGATTTTTGAAACTCCGA+AGG | - | chr2.4:17524106-17524125 | MS.gene90360:intron | 40.0% |
| !!! | CTTAGTTTGGTGGTGCTTTT+GGG | - | chr2.4:17523701-17523720 | MS.gene90360:intron | 40.0% |
| !!! | CTTTGTTTTCCCTCCCAAAT+TGG | - | chr2.4:17523052-17523071 | MS.gene90360:intron | 40.0% |
| !!! | GCGCACATGCATTTTTTTCT+TGG | - | chr2.4:17524019-17524038 | MS.gene90360:intron | 40.0% |
| !!! | TCTTAGTTTGGTGGTGCTTT+TGG | - | chr2.4:17523700-17523719 | MS.gene90360:intron | 40.0% |
| !!! | TTAGTTTGGTGGTGCTTTTG+GGG | - | chr2.4:17523702-17523721 | MS.gene90360:intron | 40.0% |
| AACTCCGAAGGACCATAGAA+AGG | - | chr2.4:17524118-17524137 | MS.gene90360:intron | 45.0% | |
| ACGCTACCACGTATGATTGA+TGG | - | chr2.4:17524809-17524828 | MS.gene90360:CDS | 45.0% | |
| AGGTCAAAGCAAAGACAAGG+AGG | - | chr2.4:17525444-17525463 | MS.gene90360:CDS | 45.0% | |
| ATGGTGCTTCACCTGTATTC+AGG | - | chr2.4:17522076-17522095 | MS.gene90360:intron | 45.0% | |
| ATTGGATTCAAGCAGAACCG+TGG | + | chr2.4:17525201-17525220 | None:intergenic | 45.0% | |
| ATTTAACAGACGGACCGTTG+GGG | + | chr2.4:17523287-17523306 | None:intergenic | 45.0% | |
| CCGACATTTGATGTTGAACC+TGG | - | chr2.4:17522634-17522653 | MS.gene90360:intron | 45.0% | |
| GAAGTCGAGGTTAAGGAGAA+TGG | - | chr2.4:17522057-17522076 | MS.gene90360:intron | 45.0% | |
| GCAAGACACAAGAGTCAGAT+GGG | + | chr2.4:17522981-17523000 | None:intergenic | 45.0% | |
| GCTTCTGCCTCATTGCAAAA+AGG | - | chr2.4:17522661-17522680 | MS.gene90360:intron | 45.0% | |
| GGCTGGAACATTTGCAAAGA+AGG | - | chr2.4:17525424-17525443 | MS.gene90360:CDS | 45.0% | |
| TGCAAGACACAAGAGTCAGA+TGG | + | chr2.4:17522982-17523001 | None:intergenic | 45.0% | |
| TGTGCACTGAAAAGCAGTGA+AGG | + | chr2.4:17523492-17523511 | None:intergenic | 45.0% | |
| ! | AATCATACGTGGTAGCGTCA+TGG | + | chr2.4:17524807-17524826 | None:intergenic | 45.0% |
| ! | CTGCACATAAAGGGCTTGTT+TGG | + | chr2.4:17522495-17522514 | None:intergenic | 45.0% |
| ! | CTTTTCAGTGCACACAATGG+AGG | - | chr2.4:17523498-17523517 | MS.gene90360:intron | 45.0% |
| ! | GGAAAGGCTTAGCCTTTCTA+TGG | + | chr2.4:17524133-17524152 | None:intergenic | 45.0% |
| !! | ATATTCGGTGGCAGTTTTGG+AGG | - | chr2.4:17525225-17525244 | MS.gene90360:intron | 45.0% |
| !! | CTGCTTTTCAGTGCACACAA+TGG | - | chr2.4:17523495-17523514 | MS.gene90360:intron | 45.0% |
| AAGCGAAAAGGCTGAAGCTG+TGG | - | chr2.4:17521951-17521970 | MS.gene90360:CDS | 50.0% | |
| AATGAGGCAGAAGCGATACC+AGG | + | chr2.4:17522655-17522674 | None:intergenic | 50.0% | |
| CTCAACAAGCTCGTTCAAGG+TGG | + | chr2.4:17522720-17522739 | None:intergenic | 50.0% | |
| GAGCTCAACAAGCTCGTTCA+AGG | + | chr2.4:17522723-17522742 | None:intergenic | 50.0% | |
| GAGTCAGACAAATTACCCCG+AGG | - | chr2.4:17525057-17525076 | MS.gene90360:intron | 50.0% | |
| TGGATGGCAAAATGCCCCAA+CGG | - | chr2.4:17523270-17523289 | MS.gene90360:CDS | 50.0% | |
| ! | AGACCAGTGAGGACCCTTTT+GGG | - | chr2.4:17522006-17522025 | MS.gene90360:CDS | 50.0% |
| AGCTGTGGCTGTGCCCAAAA+AGG | - | chr2.4:17521966-17521985 | MS.gene90360:CDS | 55.0% | |
| CATCCCAAAAGGGTCCTCAC+TGG | + | chr2.4:17522012-17522031 | None:intergenic | 55.0% | |
| CTCATCAGGCTCCAGAGGAT+TGG | + | chr2.4:17525486-17525505 | None:intergenic | 55.0% | |
| GCAAACTCATCAGGCTCCAG+AGG | + | chr2.4:17525491-17525510 | None:intergenic | 55.0% | |
| GCATGAGATGGCCAATCCTC+TGG | - | chr2.4:17525472-17525491 | MS.gene90360:CDS | 55.0% | |
| TTGCTCCAGAGAGACCAGTG+AGG | - | chr2.4:17521995-17522014 | MS.gene90360:CDS | 55.0% | |
| ! | AAAGAGGGCGGGAGCCTTTT+AGG | + | chr2.4:17523546-17523565 | None:intergenic | 55.0% |
| ! | GAGACCAGTGAGGACCCTTT+TGG | - | chr2.4:17522005-17522024 | MS.gene90360:CDS | 55.0% |
| !! | CAGTGAGGACCCTTTTGGGA+TGG | - | chr2.4:17522010-17522029 | MS.gene90360:CDS | 55.0% |
| !!! | GAGGACCCTTTTGGGATGGA+AGG | - | chr2.4:17522014-17522033 | MS.gene90360:CDS | 55.0% |
| ! | AGGGTCCTCACTGGTCTCTC+TGG | + | chr2.4:17522003-17522022 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 17521934 | 17525529 | 17521934 | ID=MS.gene90360 |
| chr2.4 | mRNA | 17521934 | 17525529 | 17521934 | ID=MS.gene90360.t1;Parent=MS.gene90360 |
| chr2.4 | exon | 17525318 | 17525529 | 17525318 | ID=MS.gene90360.t1.exon1;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17525318 | 17525529 | 17525318 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| chr2.4 | exon | 17524691 | 17524832 | 17524691 | ID=MS.gene90360.t1.exon2;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17524691 | 17524832 | 17524691 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| chr2.4 | exon | 17524142 | 17524220 | 17524142 | ID=MS.gene90360.t1.exon3;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17524142 | 17524220 | 17524142 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| chr2.4 | exon | 17523833 | 17523957 | 17523833 | ID=MS.gene90360.t1.exon4;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17523833 | 17523957 | 17523833 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| chr2.4 | exon | 17523252 | 17523353 | 17523252 | ID=MS.gene90360.t1.exon5;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17523252 | 17523353 | 17523252 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| chr2.4 | exon | 17522356 | 17522424 | 17522356 | ID=MS.gene90360.t1.exon6;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17522356 | 17522424 | 17522356 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| chr2.4 | exon | 17522173 | 17522271 | 17522173 | ID=MS.gene90360.t1.exon7;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17522173 | 17522271 | 17522173 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| chr2.4 | exon | 17521934 | 17522065 | 17521934 | ID=MS.gene90360.t1.exon8;Parent=MS.gene90360.t1 |
| chr2.4 | CDS | 17521934 | 17522065 | 17521934 | ID=cds.MS.gene90360.t1;Parent=MS.gene90360.t1 |
| Gene Sequence |
| Protein sequence |