Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43350.t1 | XP_013467257.1 | 93.7 | 599 | 38 | 0 | 1 | 599 | 1 | 599 | 5.40E-255 | 890.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43350.t1 | Q9M8Z5 | 65.0 | 568 | 185 | 5 | 1 | 564 | 1 | 558 | 2.0e-162 | 573.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43350.t1 | A0A072VI64 | 93.7 | 599 | 38 | 0 | 1 | 599 | 1 | 599 | 3.9e-255 | 890.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050574 | MS.gene43350 | 0.803131 | 4.03E-49 | -1.69E-46 |
| MS.gene053617 | MS.gene43350 | 0.825805 | 3.84E-54 | -1.69E-46 |
| MS.gene056403 | MS.gene43350 | 0.824646 | 7.21E-54 | -1.69E-46 |
| MS.gene056605 | MS.gene43350 | 0.847279 | 1.28E-59 | -1.69E-46 |
| MS.gene060830 | MS.gene43350 | 0.843065 | 1.76E-58 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43350.t1 | MTR_1g048030 | 96.494 | 599 | 21 | 0 | 1 | 599 | 1 | 599 | 0.0 | 1159 |
| MS.gene43350.t1 | MTR_2g079510 | 34.848 | 396 | 225 | 7 | 125 | 513 | 197 | 566 | 2.93e-60 | 210 |
| MS.gene43350.t1 | MTR_4g081850 | 38.676 | 287 | 153 | 3 | 125 | 411 | 189 | 452 | 5.04e-58 | 204 |
| MS.gene43350.t1 | MTR_4g050490 | 27.707 | 314 | 187 | 5 | 136 | 411 | 162 | 473 | 5.62e-28 | 119 |
| MS.gene43350.t1 | MTR_7g056733 | 86.000 | 50 | 7 | 0 | 39 | 88 | 39 | 88 | 3.64e-21 | 88.6 |
| MS.gene43350.t1 | MTR_7g094890 | 29.756 | 205 | 122 | 5 | 144 | 346 | 119 | 303 | 6.21e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43350.t1 | AT3G07050 | 65.116 | 602 | 179 | 8 | 1 | 595 | 1 | 578 | 0.0 | 663 |
| MS.gene43350.t1 | AT1G52980 | 38.235 | 306 | 166 | 3 | 125 | 430 | 199 | 481 | 7.25e-59 | 207 |
| MS.gene43350.t1 | AT2G27200 | 28.803 | 309 | 187 | 5 | 136 | 411 | 161 | 469 | 3.01e-31 | 128 |
| MS.gene43350.t1 | AT1G08410 | 28.213 | 319 | 192 | 5 | 136 | 417 | 161 | 479 | 6.15e-31 | 128 |
| MS.gene43350.t1 | AT4G02790 | 29.720 | 286 | 153 | 10 | 144 | 412 | 118 | 372 | 1.88e-15 | 79.0 |
Find 127 sgRNAs with CRISPR-Local
Find 346 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTGCTCGCCTCAATTT+TGG | 0.124286 | 1.4:+33095606 | None:intergenic |
| TTCAATTCCTGTTCCTTAAA+AGG | 0.143573 | 1.4:+33100895 | None:intergenic |
| AAAGCAATACATGACGTTTA+TGG | 0.143814 | 1.4:+33099497 | None:intergenic |
| AATAGTGAAACTTCATTTAT+TGG | 0.146286 | 1.4:-33096253 | MS.gene43350:CDS |
| CAAAGTTGATTACTTCAAAA+AGG | 0.273492 | 1.4:-33095520 | MS.gene43350:CDS |
| TCTTGTTTCAGGCTCGTAAA+AGG | 0.281841 | 1.4:-33099866 | MS.gene43350:intron |
| TACAGATTGTGGCTACTGTT+AGG | 0.291683 | 1.4:-33096565 | MS.gene43350:CDS |
| AGAAGCCGTTTCAACTGAAT+TGG | 0.312062 | 1.4:+33099812 | None:intergenic |
| CTTCAAGTACCTGGGCTAAC+TGG | 0.316334 | 1.4:+33097813 | None:intergenic |
| TAGGGCCTTTGCCAGTGATT+TGG | 0.321863 | 1.4:-33099626 | MS.gene43350:CDS |
| ATAGTGAAACTTCATTTATT+GGG | 0.325794 | 1.4:-33096252 | MS.gene43350:CDS |
| AAGCAATACATGACGTTTAT+GGG | 0.328299 | 1.4:+33099498 | None:intergenic |
| ACTGGAGGCATAGTATAATA+TGG | 0.337606 | 1.4:+33096352 | None:intergenic |
| AGAACGTGCTCTTGCTGAAT+TGG | 0.338023 | 1.4:-33100854 | MS.gene43350:CDS |
| TCCTTAAAAGGCCAATCATT+TGG | 0.343965 | 1.4:+33100907 | None:intergenic |
| ATTATACTATGCCTCCAGTT+AGG | 0.353971 | 1.4:-33096348 | MS.gene43350:CDS |
| TTGCAGAGAGTAAGAGTAAG+AGG | 0.361504 | 1.4:-33101053 | MS.gene43350:intron |
| GACATCAATCACTGTTGGTT+TGG | 0.362256 | 1.4:-33098060 | MS.gene43350:CDS |
| CAATGATGAGGATGAATCTA+TGG | 0.362444 | 1.4:-33095721 | MS.gene43350:CDS |
| CTTTGATGAGACAATGTTAG+AGG | 0.363951 | 1.4:-33096170 | MS.gene43350:intron |
| AGAAAACTCTGAAACTATCT+TGG | 0.371936 | 1.4:+33096303 | None:intergenic |
| GTCGATGTCAGTGCTAGTGC+TGG | 0.375077 | 1.4:-33097978 | MS.gene43350:CDS |
| GTTCTTCATGACTGGAATAT+AGG | 0.376417 | 1.4:-33096491 | MS.gene43350:intron |
| CCTTGATGCCCGGGATCCCT+TGG | 0.391586 | 1.4:-33099566 | MS.gene43350:CDS |
| TTGCCCTGGTGTTGTCATGC+TGG | 0.392424 | 1.4:-33097901 | MS.gene43350:CDS |
| ACAGATTGTGGCTACTGTTA+GGG | 0.404092 | 1.4:-33096564 | MS.gene43350:CDS |
| TCAATCACTGTTGGTTTGGT+TGG | 0.404100 | 1.4:-33098056 | MS.gene43350:CDS |
| TTTCCATAGATAGTTCAGAT+AGG | 0.404505 | 1.4:-33099645 | MS.gene43350:intron |
| CGCAACAGTAGGAACACTTT+CGG | 0.421264 | 1.4:+33099779 | None:intergenic |
| AACACCGAGGTTCCCATGTC+TGG | 0.423048 | 1.4:-33095435 | MS.gene43350:CDS |
| GGTTCTCCTTGATCCCTAAC+TGG | 0.438774 | 1.4:+33096334 | None:intergenic |
| TTATACTATGCCTCCAGTTA+GGG | 0.449445 | 1.4:-33096347 | MS.gene43350:CDS |
| AGAGGATGTTAGCAAGGAAA+AGG | 0.452580 | 1.4:-33095688 | MS.gene43350:CDS |
| TACTAGAGGTCCTTGATGCC+CGG | 0.453164 | 1.4:-33099576 | MS.gene43350:CDS |
| AGCCAGCTCATCTGATCCTA+TGG | 0.453591 | 1.4:-33095559 | MS.gene43350:CDS |
| CTTTGCCAGTGATTTGGATC+GGG | 0.454308 | 1.4:-33099620 | MS.gene43350:CDS |
| AACGAGTACCCAAGGGATCC+CGG | 0.456156 | 1.4:+33099557 | None:intergenic |
| CCTTTGCCAGTGATTTGGAT+CGG | 0.461178 | 1.4:-33099621 | MS.gene43350:CDS |
| GTCAAAGCAAGAGATTCGTT+TGG | 0.461640 | 1.4:-33097946 | MS.gene43350:CDS |
| CTTGATGCCCGGGATCCCTT+GGG | 0.462440 | 1.4:-33099565 | MS.gene43350:CDS |
| ATCCTGGTATTCCAAATGAT+TGG | 0.467524 | 1.4:-33100918 | MS.gene43350:CDS |
| CAAGAATCGTTCTTCATGAC+TGG | 0.469526 | 1.4:-33096499 | MS.gene43350:CDS |
| GGCCAATCATTTGGAATACC+AGG | 0.469715 | 1.4:+33100916 | None:intergenic |
| ACTGTTGCGAAGACTAATAA+AGG | 0.470225 | 1.4:-33099765 | MS.gene43350:intron |
| TCATTGTCATCAACATTCTC+AGG | 0.473233 | 1.4:+33095738 | None:intergenic |
| TCAATTAAGTGGTAAGAAGA+AGG | 0.475631 | 1.4:-33100950 | MS.gene43350:CDS |
| AGAAAGAAGCTCGTAAAGAA+AGG | 0.477638 | 1.4:-33100825 | MS.gene43350:CDS |
| TTCCATAGATAGTTCAGATA+GGG | 0.481540 | 1.4:-33099644 | MS.gene43350:intron |
| CAGGCTCGTAAAAGGAAGGC+GGG | 0.492005 | 1.4:-33099858 | MS.gene43350:CDS |
| TCATCAACTGAATCAAAACT+TGG | 0.498766 | 1.4:+33096593 | None:intergenic |
| ATGCCTCCAGTTAGGGATCA+AGG | 0.503827 | 1.4:-33096340 | MS.gene43350:CDS |
| AAGATGAGAGGGCAACTTGA+AGG | 0.504734 | 1.4:+33096190 | None:intergenic |
| TAACTCCAATTCAGTTGAAA+CGG | 0.507020 | 1.4:-33099817 | MS.gene43350:CDS |
| ATCTATGGAAAGTGATAAAG+AGG | 0.508499 | 1.4:-33095706 | MS.gene43350:CDS |
| ATCAACCTCAACACCAGACA+TGG | 0.513629 | 1.4:+33095422 | None:intergenic |
| AAGAAGGTTGAGAAAGATCC+TGG | 0.515836 | 1.4:-33100934 | MS.gene43350:CDS |
| CCAAGGGATCCCGGGCATCA+AGG | 0.518140 | 1.4:+33099566 | None:intergenic |
| TGATAAAGAGGATGTTAGCA+AGG | 0.518807 | 1.4:-33095694 | MS.gene43350:CDS |
| GGATGACAAAGCAGTTAAGT+TGG | 0.529915 | 1.4:-33095778 | MS.gene43350:CDS |
| ATCCATAGGATCAGATGAGC+TGG | 0.532677 | 1.4:+33095557 | None:intergenic |
| GAAAGAAGCTCGTAAAGAAA+GGG | 0.534276 | 1.4:-33100824 | MS.gene43350:intron |
| AGAGATATCAGCACCCTAGC+GGG | 0.534816 | 1.4:+33096626 | None:intergenic |
| TTCTCAAGCTCTGTCCCGCT+AGG | 0.535798 | 1.4:-33096640 | MS.gene43350:CDS |
| ACTAGAGGTCCTTGATGCCC+GGG | 0.544113 | 1.4:-33099575 | MS.gene43350:CDS |
| CTCAAGACATCAATCACTGT+TGG | 0.544568 | 1.4:-33098065 | MS.gene43350:CDS |
| GAAACTATCTTGGCCTCTGA+AGG | 0.545238 | 1.4:+33096313 | None:intergenic |
| TGTTAGGGGCAAGCTCAAGA+AGG | 0.553084 | 1.4:-33096549 | MS.gene43350:CDS |
| TGATGACTTCCTACAGATTG+TGG | 0.555283 | 1.4:-33096576 | MS.gene43350:CDS |
| TTGGTTGGACTGCCCAATGT+TGG | 0.564722 | 1.4:-33098041 | MS.gene43350:CDS |
| GTTAAGTTGCTGGATTGCCC+TGG | 0.568716 | 1.4:-33097915 | MS.gene43350:CDS |
| GGTTCCCATGTCTGGTGTTG+AGG | 0.568722 | 1.4:-33095427 | MS.gene43350:CDS |
| CTCGAGAGTCGGTTGAGAAG+TGG | 0.568779 | 1.4:-33099368 | MS.gene43350:CDS |
| TGCACTTGAAAGCGACAGTA+GGG | 0.569257 | 1.4:+33099322 | None:intergenic |
| ACGAGTACCCAAGGGATCCC+GGG | 0.570844 | 1.4:+33099558 | None:intergenic |
| CTGCACTTGAAAGCGACAGT+AGG | 0.571229 | 1.4:+33099321 | None:intergenic |
| ACATGATCTAACTCAACAGT+AGG | 0.573759 | 1.4:+33096220 | None:intergenic |
| TCGATGTCAGTGCTAGTGCT+GGG | 0.574430 | 1.4:-33097977 | MS.gene43350:CDS |
| TTGCAATTAAGTGATTGTCT+CGG | 0.574961 | 1.4:-33099240 | MS.gene43350:CDS |
| CCGATCCAAATCACTGGCAA+AGG | 0.576008 | 1.4:+33099621 | None:intergenic |
| TTATTAGTCTTCGCAACAGT+AGG | 0.576810 | 1.4:+33099768 | None:intergenic |
| GAGTCCAGCATGACAACACC+AGG | 0.578166 | 1.4:+33097897 | None:intergenic |
| AAGGAAGGCGGGGTTGCCAG+TGG | 0.578828 | 1.4:-33099847 | MS.gene43350:CDS |
| TAAAGAGTTTAACATTGATG+AGG | 0.580829 | 1.4:-33096281 | MS.gene43350:CDS |
| AGGACACGATGGATGCTGAC+GGG | 0.582177 | 1.4:-33095500 | MS.gene43350:CDS |
| GTGCTAGTGCTGGGTCGACA+AGG | 0.591514 | 1.4:-33097968 | MS.gene43350:CDS |
| AGATCTTGTCCCTCGAGAGT+CGG | 0.593701 | 1.4:-33099379 | MS.gene43350:CDS |
| GTTTCAGGCTCGTAAAAGGA+AGG | 0.594629 | 1.4:-33099862 | MS.gene43350:intron |
| TCTCAAGCTCTGTCCCGCTA+GGG | 0.595120 | 1.4:-33096639 | MS.gene43350:CDS |
| AACACCAGACATGGGAACCT+CGG | 0.595303 | 1.4:+33095431 | None:intergenic |
| CACTTCTCAACCGACTCTCG+AGG | 0.596471 | 1.4:+33099369 | None:intergenic |
| GTTAACACAACGAGTACCCA+AGG | 0.598523 | 1.4:+33099549 | None:intergenic |
| AAGTCATAATCACCATCCAT+AGG | 0.599349 | 1.4:+33095543 | None:intergenic |
| AAGTTGGCAAAACAAGATGA+AGG | 0.603504 | 1.4:-33095762 | MS.gene43350:CDS |
| TTGTCTCATCAAAGATGAGA+GGG | 0.604223 | 1.4:+33096179 | None:intergenic |
| CAGATTGTGGCTACTGTTAG+GGG | 0.604493 | 1.4:-33096563 | MS.gene43350:CDS |
| AATAACCCGATCCAAATCAC+TGG | 0.604541 | 1.4:+33099615 | None:intergenic |
| GAGAAGTTATATACAGCGGA+GGG | 0.610057 | 1.4:-33095639 | MS.gene43350:CDS |
| TGCAGAGAGTAAGAGTAAGA+GGG | 0.611372 | 1.4:-33101052 | MS.gene43350:intron |
| TTGGAGTTATCATCATCCAC+TGG | 0.612027 | 1.4:+33099831 | None:intergenic |
| TGAGAAGTTATATACAGCGG+AGG | 0.615635 | 1.4:-33095640 | MS.gene43350:CDS |
| GTATACTTAATCCAAAATTG+AGG | 0.617540 | 1.4:-33095617 | MS.gene43350:CDS |
| AGCTCATCTGATCCTATGGA+TGG | 0.618484 | 1.4:-33095555 | MS.gene43350:CDS |
| TAACAGTAGCCACAATCTGT+AGG | 0.620654 | 1.4:+33096567 | None:intergenic |
| GTTAGGGGCAAGCTCAAGAA+GGG | 0.621289 | 1.4:-33096548 | MS.gene43350:CDS |
| TTAGCTGATCCAGTTAGCCC+AGG | 0.623020 | 1.4:-33097822 | MS.gene43350:intron |
| ATTGTCTCATCAAAGATGAG+AGG | 0.635020 | 1.4:+33096178 | None:intergenic |
| AAGGACACGATGGATGCTGA+CGG | 0.635872 | 1.4:-33095501 | MS.gene43350:CDS |
| TAGCACTGACATCGACAGCA+TGG | 0.638654 | 1.4:+33097985 | None:intergenic |
| CAGTAGGGAATTCTTCTCGA+AGG | 0.646359 | 1.4:+33099337 | None:intergenic |
| AGGGGCAAGCTCAAGAAGGG+TGG | 0.649554 | 1.4:-33096545 | MS.gene43350:CDS |
| TCAGGCTCGTAAAAGGAAGG+CGG | 0.649927 | 1.4:-33099859 | MS.gene43350:intron |
| ACTTCTCAACCGACTCTCGA+GGG | 0.655724 | 1.4:+33099370 | None:intergenic |
| GAATTATGCAAGAAGCGACA+AGG | 0.656552 | 1.4:-33099190 | MS.gene43350:intron |
| TCAACCTCAACACCAGACAT+GGG | 0.660182 | 1.4:+33095423 | None:intergenic |
| GGATCAAGGAGAACCTTCAG+AGG | 0.661640 | 1.4:-33096326 | MS.gene43350:CDS |
| AGAGTCTGATGTCATACTAG+AGG | 0.662679 | 1.4:-33099590 | MS.gene43350:CDS |
| ATGGATGCTGACGGGAGTGA+CGG | 0.668896 | 1.4:-33095492 | MS.gene43350:CDS |
| TCTCCTTGATCCCTAACTGG+AGG | 0.671867 | 1.4:+33096337 | None:intergenic |
| AGGCTCGTAAAAGGAAGGCG+GGG | 0.684944 | 1.4:-33099857 | MS.gene43350:CDS |
| TTAACACAACGAGTACCCAA+GGG | 0.685445 | 1.4:+33099550 | None:intergenic |
| GATGCTGACGGGAGTGACGG+TGG | 0.688567 | 1.4:-33095489 | MS.gene43350:CDS |
| AAATGAGAAGTTATATACAG+CGG | 0.699343 | 1.4:-33095643 | MS.gene43350:CDS |
| GACGGTGGTGACGACAATGA+TGG | 0.707599 | 1.4:-33095474 | MS.gene43350:CDS |
| GAATGTTGATGACAATGATG+AGG | 0.708173 | 1.4:-33095733 | MS.gene43350:CDS |
| AAGAGATATCAGCACCCTAG+CGG | 0.715395 | 1.4:+33096625 | None:intergenic |
| AGTCCAGCATGACAACACCA+GGG | 0.773850 | 1.4:+33097898 | None:intergenic |
| TGATGAACAAGTCAACACCG+AGG | 0.841599 | 1.4:-33095448 | MS.gene43350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATTTATTTTTTTTTTAA+TGG | - | chr1.4:33095923-33095942 | MS.gene43350:intron | 0.0% |
| !! | AAAAAAAAAAAATGAACTTA+TGG | - | chr1.4:33096202-33096221 | MS.gene43350:CDS | 10.0% |
| !! | AAACCTTATTATTATTATTA+GGG | - | chr1.4:33097692-33097711 | MS.gene43350:intron | 10.0% |
| !! | AAATAAGAGAATTAATTAAT+GGG | + | chr1.4:33098793-33098812 | None:intergenic | 10.0% |
| !! | TAAATAAGAGAATTAATTAA+TGG | + | chr1.4:33098794-33098813 | None:intergenic | 10.0% |
| !!! | ATTAATTAATTCTCTTATTT+AGG | - | chr1.4:33098793-33098812 | MS.gene43350:intron | 10.0% |
| !!! | ATTTCAAAATTAAGATTTTA+AGG | + | chr1.4:33099846-33099865 | None:intergenic | 10.0% |
| !!! | TCATTTTTTTTTTTTTTTGA+AGG | + | chr1.4:33096197-33096216 | None:intergenic | 10.0% |
| !!! | TTATAAATTTTTCTTACTTT+CGG | + | chr1.4:33100174-33100193 | None:intergenic | 10.0% |
| !!! | TTTAGTTTAAACTTTAAAAT+TGG | - | chr1.4:33099217-33099236 | MS.gene43350:CDS | 10.0% |
| !! | AAATATGTTAAAACATTACA+AGG | - | chr1.4:33100449-33100468 | MS.gene43350:intron | 15.0% |
| !! | AACATAAAAAATAAAAAGAG+AGG | + | chr1.4:33097439-33097458 | None:intergenic | 15.0% |
| !! | AATAAGAGAATTAATTAATG+GGG | + | chr1.4:33098792-33098811 | None:intergenic | 15.0% |
| !! | ACATAAAAAATAAAAAGAGA+GGG | + | chr1.4:33097438-33097457 | None:intergenic | 15.0% |
| !! | AGATTAAAAATTACAATGAA+AGG | + | chr1.4:33100683-33100702 | None:intergenic | 15.0% |
| !! | ATTTATTGTTTGAAAATTGA+TGG | - | chr1.4:33095818-33095837 | MS.gene43350:intron | 15.0% |
| !! | GAAACCTTATTATTATTATT+AGG | - | chr1.4:33097691-33097710 | MS.gene43350:intron | 15.0% |
| !! | TTTATTGTTTGAAAATTGAT+GGG | - | chr1.4:33095819-33095838 | MS.gene43350:intron | 15.0% |
| !! | TTTCCCTAATAATAATAATA+AGG | + | chr1.4:33097698-33097717 | None:intergenic | 15.0% |
| !!! | AAAAATTAAATTTTGTGAGA+TGG | - | chr1.4:33095853-33095872 | MS.gene43350:intron | 15.0% |
| !!! | AAAATTAAATTTTGTGAGAT+GGG | - | chr1.4:33095854-33095873 | MS.gene43350:intron | 15.0% |
| !!! | AATGATCTTTTTTTTACTAT+GGG | - | chr1.4:33099585-33099604 | MS.gene43350:CDS | 15.0% |
| !!! | GCAATTTTAATTAAATTTTG+TGG | - | chr1.4:33099008-33099027 | MS.gene43350:intron | 15.0% |
| !!! | TAATACTGATAATTGTTTTT+AGG | - | chr1.4:33098968-33098987 | MS.gene43350:intron | 15.0% |
| !!! | TAATGATCTTTTTTTTACTA+TGG | - | chr1.4:33099584-33099603 | MS.gene43350:CDS | 15.0% |
| !! | AAATTGAAAAAGTGATGAAA+GGG | + | chr1.4:33095448-33095467 | None:intergenic | 20.0% |
| !! | AATAGTGAAACTTCATTTAT+TGG | - | chr1.4:33100315-33100334 | MS.gene43350:intron | 20.0% |
| !! | ACTTCTAGTATTACAATTTA+TGG | - | chr1.4:33098436-33098455 | MS.gene43350:intron | 20.0% |
| !! | ATAAGAGAATTAATTAATGG+GGG | + | chr1.4:33098791-33098810 | None:intergenic | 20.0% |
| !! | ATAATCACTAAAATGTAGAA+TGG | + | chr1.4:33098388-33098407 | None:intergenic | 20.0% |
| !! | ATAATTTCTGCATAAGAAAA+TGG | + | chr1.4:33098884-33098903 | None:intergenic | 20.0% |
| !! | ATAGTGAAACTTCATTTATT+GGG | - | chr1.4:33100316-33100335 | MS.gene43350:intron | 20.0% |
| !! | GATTAATTAACTAGAACTAT+TGG | - | chr1.4:33096478-33096497 | MS.gene43350:intron | 20.0% |
| !! | TAATTACTAAAGAGAACAAT+AGG | + | chr1.4:33099617-33099636 | None:intergenic | 20.0% |
| !! | TTGTGTTAACATAGAAAAAA+GGG | - | chr1.4:33097032-33097051 | MS.gene43350:intron | 20.0% |
| !! | TTGTTTGTATAATTAAAGTG+AGG | - | chr1.4:33097544-33097563 | MS.gene43350:intron | 20.0% |
| !!! | AATAAGTTGAAAACAACTTA+TGG | - | chr1.4:33096162-33096181 | MS.gene43350:intron | 20.0% |
| !!! | ATTTTGTACTTTTTCTTCAA+TGG | + | chr1.4:33095544-33095563 | None:intergenic | 20.0% |
| !!! | GTATTGCTTTTGAATAAAAT+TGG | - | chr1.4:33097084-33097103 | MS.gene43350:intron | 20.0% |
| !!! | TAAAAGTACAGATAAAAACT+AGG | + | chr1.4:33099511-33099530 | None:intergenic | 20.0% |
| !!! | TAATATTCGATTTGATTGAT+GGG | - | chr1.4:33100556-33100575 | MS.gene43350:intron | 20.0% |
| !!! | TAGTTGAAGTATATTTTATG+AGG | - | chr1.4:33096011-33096030 | MS.gene43350:intron | 20.0% |
| !!! | TATTTTATGAGGATTAGATT+TGG | - | chr1.4:33096022-33096041 | MS.gene43350:intron | 20.0% |
| !!! | TTAATATTCGATTTGATTGA+TGG | - | chr1.4:33100555-33100574 | MS.gene43350:intron | 20.0% |
| ! | AAAACATGTATAGAATCTCA+AGG | + | chr1.4:33099132-33099151 | None:intergenic | 25.0% |
| ! | AAATGAGAAGTTATATACAG+CGG | - | chr1.4:33100925-33100944 | MS.gene43350:CDS | 25.0% |
| ! | ACTCAAAAGGTAAAGATAAT+AGG | + | chr1.4:33099179-33099198 | None:intergenic | 25.0% |
| ! | AGACAAAGCCAAAATAATTA+CGG | + | chr1.4:33098477-33098496 | None:intergenic | 25.0% |
| ! | AGATAATAGGTTACTAGTAT+TGG | + | chr1.4:33099166-33099185 | None:intergenic | 25.0% |
| ! | ATATCTTGTAAAATTGACGA+GGG | + | chr1.4:33098048-33098067 | None:intergenic | 25.0% |
| ! | ATGAAAAAAATATTCCCAGA+AGG | + | chr1.4:33097143-33097162 | None:intergenic | 25.0% |
| ! | ATTTATAATTGCACTGTTTC+AGG | - | chr1.4:33100186-33100205 | MS.gene43350:intron | 25.0% |
| ! | CAATATATTTAGCACTCAAA+AGG | + | chr1.4:33099192-33099211 | None:intergenic | 25.0% |
| ! | CTAGATAAGTCAATCTAAAT+AGG | - | chr1.4:33096270-33096289 | MS.gene43350:CDS | 25.0% |
| ! | CTGGAAAAACAAATTGAAAA+GGG | + | chr1.4:33100771-33100790 | None:intergenic | 25.0% |
| ! | GAAATTGAAAAAGTGATGAA+AGG | + | chr1.4:33095449-33095468 | None:intergenic | 25.0% |
| ! | GATAATAGGTTACTAGTATT+GGG | + | chr1.4:33099165-33099184 | None:intergenic | 25.0% |
| ! | GGTCTTTATTCTTTAATCAA+CGG | + | chr1.4:33099448-33099467 | None:intergenic | 25.0% |
| ! | GTATACTTAATCCAAAATTG+AGG | - | chr1.4:33100951-33100970 | MS.gene43350:CDS | 25.0% |
| ! | GTTGTGTTAACATAGAAAAA+AGG | - | chr1.4:33097031-33097050 | MS.gene43350:intron | 25.0% |
| ! | TAAAGAGTTTAACATTGATG+AGG | - | chr1.4:33100287-33100306 | MS.gene43350:intron | 25.0% |
| ! | TATATCTTGTAAAATTGACG+AGG | + | chr1.4:33098049-33098068 | None:intergenic | 25.0% |
| ! | TCATAAATCAAATTTCAACC+AGG | + | chr1.4:33099484-33099503 | None:intergenic | 25.0% |
| ! | TGAAAAAAATATTCCCAGAA+GGG | + | chr1.4:33097142-33097161 | None:intergenic | 25.0% |
| ! | TGCAAGTGTTCTTATAAATA+TGG | - | chr1.4:33097476-33097495 | MS.gene43350:intron | 25.0% |
| ! | TGCATAAAGAAACAAACAAA+TGG | + | chr1.4:33098217-33098236 | None:intergenic | 25.0% |
| !! | CAAAGTTGATTACTTCAAAA+AGG | - | chr1.4:33101048-33101067 | MS.gene43350:CDS | 25.0% |
| !! | CAATCAAAATCTCAGAATTT+TGG | + | chr1.4:33100614-33100633 | None:intergenic | 25.0% |
| !! | CTATTTTGCCGTAATTATTT+TGG | - | chr1.4:33098466-33098485 | MS.gene43350:intron | 25.0% |
| !! | GGATGTTATCAATACTATTT+TGG | - | chr1.4:33097650-33097669 | MS.gene43350:intron | 25.0% |
| !! | TCTTATTTAGGTCTTCATAT+TGG | - | chr1.4:33098805-33098824 | MS.gene43350:intron | 25.0% |
| !! | TGATACTTTTCATGTTATAC+TGG | - | chr1.4:33098280-33098299 | MS.gene43350:intron | 25.0% |
| !! | TTTTGTGGAATTGAAACTAA+GGG | - | chr1.4:33099256-33099275 | MS.gene43350:CDS | 25.0% |
| !! | TTTTTGTGGAATTGAAACTA+AGG | - | chr1.4:33099255-33099274 | MS.gene43350:CDS | 25.0% |
| !!! | ATACATGTTTCTTTTGAAGT+TGG | - | chr1.4:33100123-33100142 | MS.gene43350:intron | 25.0% |
| !!! | CAAAATTCTGAGATTTTGAT+TGG | - | chr1.4:33100612-33100631 | MS.gene43350:intron | 25.0% |
| !!! | GTATAACATGAAAAGTATCA+TGG | + | chr1.4:33098280-33098299 | None:intergenic | 25.0% |
| !!! | TCTATTTTTAACTCCTTAAC+TGG | - | chr1.4:33097845-33097864 | MS.gene43350:CDS | 25.0% |
| !!! | TTCTTTTGAAGTTGGAAATT+AGG | - | chr1.4:33100131-33100150 | MS.gene43350:intron | 25.0% |
| AAAGAGGTTACATGAAGTTT+GGG | - | chr1.4:33099367-33099386 | MS.gene43350:CDS | 30.0% | |
| AAAGATCCATCGATATAGTA+AGG | - | chr1.4:33099398-33099417 | MS.gene43350:intron | 30.0% | |
| AAAGCAATACATGACGTTTA+TGG | + | chr1.4:33097074-33097093 | None:intergenic | 30.0% | |
| AACACACTACAAACTGAATA+GGG | + | chr1.4:33100724-33100743 | None:intergenic | 30.0% | |
| AACAGCAAAAATCAAACCTA+GGG | - | chr1.4:33097275-33097294 | MS.gene43350:intron | 30.0% | |
| AAGATCCATCGATATAGTAA+GGG | - | chr1.4:33099399-33099418 | MS.gene43350:intron | 30.0% | |
| AAGCAATACATGACGTTTAT+GGG | + | chr1.4:33097073-33097092 | None:intergenic | 30.0% | |
| AAGGAGAAACATGAATGATA+AGG | + | chr1.4:33098013-33098032 | None:intergenic | 30.0% | |
| AATTTGGCACTTGTATGTTT+GGG | - | chr1.4:33098243-33098262 | MS.gene43350:intron | 30.0% | |
| ACCTCTTTCAAATAAGAACT+AGG | + | chr1.4:33099355-33099374 | None:intergenic | 30.0% | |
| AGAAGTGAAGTTACAAGAAT+TGG | + | chr1.4:33098422-33098441 | None:intergenic | 30.0% | |
| AGAGAAGAAGAAAAAGAAGA+AGG | - | chr1.4:33100979-33100998 | MS.gene43350:CDS | 30.0% | |
| AGGAGAAACATGAATGATAA+GGG | + | chr1.4:33098012-33098031 | None:intergenic | 30.0% | |
| ATAACAAGAGTTATGCTAAC+CGG | + | chr1.4:33097884-33097903 | None:intergenic | 30.0% | |
| ATCTATGGAAAGTGATAAAG+AGG | - | chr1.4:33100862-33100881 | MS.gene43350:CDS | 30.0% | |
| ATTAACCTCATTATCCAAAC+AGG | + | chr1.4:33096062-33096081 | None:intergenic | 30.0% | |
| ATTTCTGCATAAGAAAATGG+AGG | + | chr1.4:33098881-33098900 | None:intergenic | 30.0% | |
| CCTGGAAAAACAAATTGAAA+AGG | + | chr1.4:33100772-33100791 | None:intergenic | 30.0% | |
| GAAGTGAAGTTACAAGAATT+GGG | + | chr1.4:33098421-33098440 | None:intergenic | 30.0% | |
| GCTAAAAAGCTTCAATTAAG+TGG | - | chr1.4:33095607-33095626 | MS.gene43350:CDS | 30.0% | |
| GTATAGAATCTCAAGGTAAA+GGG | + | chr1.4:33099125-33099144 | None:intergenic | 30.0% | |
| TAACACACTACAAACTGAAT+AGG | + | chr1.4:33100725-33100744 | None:intergenic | 30.0% | |
| TAACTCCAATTCAGTTGAAA+CGG | - | chr1.4:33096751-33096770 | MS.gene43350:intron | 30.0% | |
| TATGTTGTGTTATGACTGTA+TGG | - | chr1.4:33096609-33096628 | MS.gene43350:CDS | 30.0% | |
| TCAATTAAGTGGTAAGAAGA+AGG | - | chr1.4:33095618-33095637 | MS.gene43350:CDS | 30.0% | |
| TCAGTGTTATGTAATTTCTG+TGG | - | chr1.4:33098086-33098105 | MS.gene43350:intron | 30.0% | |
| TCATCAACTGAATCAAAACT+TGG | + | chr1.4:33099978-33099997 | None:intergenic | 30.0% | |
| TCTTTATGCATGCATGAATT+TGG | - | chr1.4:33098227-33098246 | MS.gene43350:intron | 30.0% | |
| TCTTTCAAATAAGAACTAGG+TGG | + | chr1.4:33099352-33099371 | None:intergenic | 30.0% | |
| TGGATAATGAGGTTAATTGA+GGG | - | chr1.4:33096065-33096084 | MS.gene43350:intron | 30.0% | |
| TGTATAGAATCTCAAGGTAA+AGG | + | chr1.4:33099126-33099145 | None:intergenic | 30.0% | |
| TTAACATAGAAAAAAGGGTG+AGG | - | chr1.4:33097037-33097056 | MS.gene43350:intron | 30.0% | |
| TTAACCTCATTATCCAAACA+GGG | + | chr1.4:33096061-33096080 | None:intergenic | 30.0% | |
| TTCAATTCCTGTTCCTTAAA+AGG | + | chr1.4:33095676-33095695 | None:intergenic | 30.0% | |
| TTCCATAGATAGTTCAGATA+GGG | - | chr1.4:33096924-33096943 | MS.gene43350:intron | 30.0% | |
| TTGCAATTAAGTGATTGTCT+CGG | - | chr1.4:33097328-33097347 | MS.gene43350:intron | 30.0% | |
| TTGGATAATGAGGTTAATTG+AGG | - | chr1.4:33096064-33096083 | MS.gene43350:intron | 30.0% | |
| TTTCCATAGATAGTTCAGAT+AGG | - | chr1.4:33096923-33096942 | MS.gene43350:intron | 30.0% | |
| TTTCTGCATAAGAAAATGGA+GGG | + | chr1.4:33098880-33098899 | None:intergenic | 30.0% | |
| ! | AAATTGACACGCATCTATTT+TGG | - | chr1.4:33100484-33100503 | MS.gene43350:intron | 30.0% |
| ! | AATTTTTCTTACTTTCGGAC+AGG | + | chr1.4:33100169-33100188 | None:intergenic | 30.0% |
| ! | ACCTAGTTCTTATTTGAAAG+AGG | - | chr1.4:33099351-33099370 | MS.gene43350:CDS | 30.0% |
| ! | CAAAATCTCAGAATTTTGGA+GGG | + | chr1.4:33100610-33100629 | None:intergenic | 30.0% |
| ! | CAGCATTTGTGAAACTTTTT+AGG | + | chr1.4:33096244-33096263 | None:intergenic | 30.0% |
| ! | CTATTACACTATTTTCTCTC+TGG | - | chr1.4:33099532-33099551 | MS.gene43350:CDS | 30.0% |
| ! | CTTGAGATTACAAGTTTTAC+CGG | + | chr1.4:33096341-33096360 | None:intergenic | 30.0% |
| ! | GGAAGTCTAATCCTTTTTAT+TGG | - | chr1.4:33099887-33099906 | MS.gene43350:intron | 30.0% |
| ! | TCAAAATCTCAGAATTTTGG+AGG | + | chr1.4:33100611-33100630 | None:intergenic | 30.0% |
| ! | TTGAGATTACAAGTTTTACC+GGG | + | chr1.4:33096340-33096359 | None:intergenic | 30.0% |
| !! | AAGACTACTTTTACCAACAT+TGG | + | chr1.4:33098543-33098562 | None:intergenic | 30.0% |
| !! | AGAAAACTCTGAAACTATCT+TGG | + | chr1.4:33100268-33100287 | None:intergenic | 30.0% |
| !! | AGACTACTTTTACCAACATT+GGG | + | chr1.4:33098542-33098561 | None:intergenic | 30.0% |
| !! | ATCAGAGATGTTACTTTATG+TGG | - | chr1.4:33097595-33097614 | MS.gene43350:intron | 30.0% |
| !! | CCTTTTCAATTTGTTTTTCC+AGG | - | chr1.4:33100769-33100788 | MS.gene43350:intron | 30.0% |
| !! | TCAGAGATGTTACTTTATGT+GGG | - | chr1.4:33097596-33097615 | MS.gene43350:intron | 30.0% |
| !!! | TGATTTTTTTAGATCTCCCT+AGG | + | chr1.4:33097294-33097313 | None:intergenic | 30.0% |
| !!! | TTGAAGCTTTTTAGCTTCTT+TGG | + | chr1.4:33095602-33095621 | None:intergenic | 30.0% |
| AAATATTCCCAGAAGGGAAA+AGG | + | chr1.4:33097136-33097155 | None:intergenic | 35.0% | |
| AAGAGGTTACATGAAGTTTG+GGG | - | chr1.4:33099368-33099387 | MS.gene43350:CDS | 35.0% | |
| AAGCAGGATCAATATTGTGA+AGG | + | chr1.4:33099690-33099709 | None:intergenic | 35.0% | |
| AAGTCATAATCACCATCCAT+AGG | + | chr1.4:33101028-33101047 | None:intergenic | 35.0% | |
| AAGTTGGCAAAACAAGATGA+AGG | - | chr1.4:33100806-33100825 | MS.gene43350:intron | 35.0% | |
| AATATTCCCAGAAGGGAAAA+GGG | + | chr1.4:33097135-33097154 | None:intergenic | 35.0% | |
| ACATGATCTAACTCAACAGT+AGG | + | chr1.4:33100351-33100370 | None:intergenic | 35.0% | |
| ACTGTTGCGAAGACTAATAA+AGG | - | chr1.4:33096803-33096822 | MS.gene43350:intron | 35.0% | |
| AGAAAGAAGCTCGTAAAGAA+AGG | - | chr1.4:33095743-33095762 | MS.gene43350:CDS | 35.0% | |
| AGGGAGCTAAAACTAACTTA+AGG | + | chr1.4:33100591-33100610 | None:intergenic | 35.0% | |
| ATCCTGGTATTCCAAATGAT+TGG | - | chr1.4:33095650-33095669 | MS.gene43350:CDS | 35.0% | |
| ATGGATGAAAAGATAGGATC+AGG | + | chr1.4:33099646-33099665 | None:intergenic | 35.0% | |
| ATTATACTATGCCTCCAGTT+AGG | - | chr1.4:33100220-33100239 | MS.gene43350:intron | 35.0% | |
| ATTGTCTCATCAAAGATGAG+AGG | + | chr1.4:33100393-33100412 | None:intergenic | 35.0% | |
| CAACAGCAAAAATCAAACCT+AGG | - | chr1.4:33097274-33097293 | MS.gene43350:intron | 35.0% | |
| CAACGGAACTTGAATACAAT+GGG | + | chr1.4:33099431-33099450 | None:intergenic | 35.0% | |
| CAATGATGAGGATGAATCTA+TGG | - | chr1.4:33100847-33100866 | MS.gene43350:CDS | 35.0% | |
| CACTGCATTGTCCAATAAAA+AGG | + | chr1.4:33099901-33099920 | None:intergenic | 35.0% | |
| CAGCTTACATAAGCACTTAT+AGG | + | chr1.4:33096111-33096130 | None:intergenic | 35.0% | |
| CAGTATTAGAGTCTAGAAGA+GGG | + | chr1.4:33098956-33098975 | None:intergenic | 35.0% | |
| CGGTAAAACTTGTAATCTCA+AGG | - | chr1.4:33096339-33096358 | MS.gene43350:CDS | 35.0% | |
| CTGGGTTAAGGAGTTATAAA+AGG | - | chr1.4:33097741-33097760 | MS.gene43350:intron | 35.0% | |
| CTTTGATGAGACAATGTTAG+AGG | - | chr1.4:33100398-33100417 | MS.gene43350:intron | 35.0% | |
| GAAAGAAGCTCGTAAAGAAA+GGG | - | chr1.4:33095744-33095763 | MS.gene43350:CDS | 35.0% | |
| GAAAGAGGTTACATGAAGTT+TGG | - | chr1.4:33099366-33099385 | MS.gene43350:CDS | 35.0% | |
| GAACTAAGCTCAAGTTACTT+TGG | - | chr1.4:33096361-33096380 | MS.gene43350:CDS | 35.0% | |
| GAATTTGGCACTTGTATGTT+TGG | - | chr1.4:33098242-33098261 | MS.gene43350:intron | 35.0% | |
| GAGAATTAATTAATGGGGGA+AGG | + | chr1.4:33098787-33098806 | None:intergenic | 35.0% | |
| GTTATCATGATCTCAGTTGA+AGG | - | chr1.4:33099091-33099110 | MS.gene43350:intron | 35.0% | |
| GTTATGAAATGAACTTCCGA+TGG | + | chr1.4:33099665-33099684 | None:intergenic | 35.0% | |
| GTTCTTCATGACTGGAATAT+AGG | - | chr1.4:33100077-33100096 | MS.gene43350:intron | 35.0% | |
| TCAACGGAACTTGAATACAA+TGG | + | chr1.4:33099432-33099451 | None:intergenic | 35.0% | |
| TCAGTATTAGAGTCTAGAAG+AGG | + | chr1.4:33098957-33098976 | None:intergenic | 35.0% | |
| TCATTGTCATCAACATTCTC+AGG | + | chr1.4:33100833-33100852 | None:intergenic | 35.0% | |
| TCCTTAAAAGGCCAATCATT+TGG | + | chr1.4:33095664-33095683 | None:intergenic | 35.0% | |
| TGATAAAGAGGATGTTAGCA+AGG | - | chr1.4:33100874-33100893 | MS.gene43350:CDS | 35.0% | |
| TTACTTCAAAAAGGACACGA+TGG | - | chr1.4:33101057-33101076 | MS.gene43350:intron | 35.0% | |
| TTATACTATGCCTCCAGTTA+GGG | - | chr1.4:33100221-33100240 | MS.gene43350:intron | 35.0% | |
| TTGTCTCATCAAAGATGAGA+GGG | + | chr1.4:33100392-33100411 | None:intergenic | 35.0% | |
| ! | AATAGGTTACTAGTATTGGG+AGG | + | chr1.4:33099162-33099181 | None:intergenic | 35.0% |
| ! | ACATTACAAGGAAAGTGTGT+TGG | - | chr1.4:33100461-33100480 | MS.gene43350:intron | 35.0% |
| ! | ACTGGAGGCATAGTATAATA+TGG | + | chr1.4:33100219-33100238 | None:intergenic | 35.0% |
| ! | ATAGGTTACTAGTATTGGGA+GGG | + | chr1.4:33099161-33099180 | None:intergenic | 35.0% |
| ! | GATCCTATCTTTTCATCCAT+CGG | - | chr1.4:33099646-33099665 | MS.gene43350:intron | 35.0% |
| ! | GGACAAAAATGTTAAGTTGC+TGG | - | chr1.4:33098643-33098662 | MS.gene43350:intron | 35.0% |
| ! | GTAATGCTACTTGAAATGGA+TGG | - | chr1.4:33098829-33098848 | MS.gene43350:intron | 35.0% |
| ! | TAGAAGCACATGTAATGAGA+GGG | + | chr1.4:33099566-33099585 | None:intergenic | 35.0% |
| ! | TCATGTCTAACTCTTGTTTC+AGG | - | chr1.4:33096691-33096710 | MS.gene43350:intron | 35.0% |
| ! | TGGAGTAATGCTACTTGAAA+TGG | - | chr1.4:33098825-33098844 | MS.gene43350:intron | 35.0% |
| ! | TTAGAAGCACATGTAATGAG+AGG | + | chr1.4:33099567-33099586 | None:intergenic | 35.0% |
| ! | TTTTGGATGGTCTGTTTGTA+TGG | - | chr1.4:33100501-33100520 | MS.gene43350:intron | 35.0% |
| !! | GAATGTTGATGACAATGATG+AGG | - | chr1.4:33100835-33100854 | MS.gene43350:CDS | 35.0% |
| !! | TAGGGTCTCTTTTGATTCAA+AGG | + | chr1.4:33100706-33100725 | None:intergenic | 35.0% |
| !! | TTATTAGTCTTCGCAACAGT+AGG | + | chr1.4:33096803-33096822 | None:intergenic | 35.0% |
| !! | TTTGTGAAACTTTTTAGGCG+AGG | + | chr1.4:33096239-33096258 | None:intergenic | 35.0% |
| !!! | AGGCTTGGCTTGATTTTTTT+GGG | + | chr1.4:33099306-33099325 | None:intergenic | 35.0% |
| !!! | ATTTTGAAATCCCGACTTTC+AGG | - | chr1.4:33099856-33099875 | MS.gene43350:CDS | 35.0% |
| !!! | TCCAAATGATTGGCCTTTTA+AGG | - | chr1.4:33095660-33095679 | MS.gene43350:CDS | 35.0% |
| AAGAAGGTTGAGAAAGATCC+TGG | - | chr1.4:33095634-33095653 | MS.gene43350:CDS | 40.0% | |
| AATAACCCGATCCAAATCAC+TGG | + | chr1.4:33096956-33096975 | None:intergenic | 40.0% | |
| ACAGATTGTGGCTACTGTTA+GGG | - | chr1.4:33100004-33100023 | MS.gene43350:intron | 40.0% | |
| ACTTAACTGCTTTGTCATCC+TGG | + | chr1.4:33100790-33100809 | None:intergenic | 40.0% | |
| AGAAGCCGTTTCAACTGAAT+TGG | + | chr1.4:33096759-33096778 | None:intergenic | 40.0% | |
| AGAGGATGTTAGCAAGGAAA+AGG | - | chr1.4:33100880-33100899 | MS.gene43350:CDS | 40.0% | |
| AGAGTCTGATGTCATACTAG+AGG | - | chr1.4:33096978-33096997 | MS.gene43350:intron | 40.0% | |
| ATATTCCCAGAAGGGAAAAG+GGG | + | chr1.4:33097134-33097153 | None:intergenic | 40.0% | |
| ATTCCACAAAAAGCAAGCAG+TGG | + | chr1.4:33099247-33099266 | None:intergenic | 40.0% | |
| CAAATAAGAACTAGGTGGTG+AGG | + | chr1.4:33099347-33099366 | None:intergenic | 40.0% | |
| CAAGAATCGTTCTTCATGAC+TGG | - | chr1.4:33100069-33100088 | MS.gene43350:intron | 40.0% | |
| CATGATCTCAGTTGAAGGAA+TGG | - | chr1.4:33099096-33099115 | MS.gene43350:intron | 40.0% | |
| CTCAAGACATCAATCACTGT+TGG | - | chr1.4:33098503-33098522 | MS.gene43350:intron | 40.0% | |
| CTTCCGATGGATGAAAAGAT+AGG | + | chr1.4:33099652-33099671 | None:intergenic | 40.0% | |
| CTTGTGATTCACATGCTTCT+TGG | - | chr1.4:33097629-33097648 | MS.gene43350:intron | 40.0% | |
| GAAAATGGAGGGTTATACAG+AGG | + | chr1.4:33098869-33098888 | None:intergenic | 40.0% | |
| GAATTATGCAAGAAGCGACA+AGG | - | chr1.4:33097378-33097397 | MS.gene43350:intron | 40.0% | |
| GAGAAGTTATATACAGCGGA+GGG | - | chr1.4:33100929-33100948 | MS.gene43350:CDS | 40.0% | |
| GGATGACAAAGCAGTTAAGT+TGG | - | chr1.4:33100790-33100809 | MS.gene43350:intron | 40.0% | |
| GTCAAAGCAAGAGATTCGTT+TGG | - | chr1.4:33098622-33098641 | MS.gene43350:intron | 40.0% | |
| GTGAAGTTACAAGAATTGGG+AGG | + | chr1.4:33098418-33098437 | None:intergenic | 40.0% | |
| TAACAGTAGCCACAATCTGT+AGG | + | chr1.4:33100004-33100023 | None:intergenic | 40.0% | |
| TACAGATTGTGGCTACTGTT+AGG | - | chr1.4:33100003-33100022 | MS.gene43350:intron | 40.0% | |
| TCATGCCCTTACTATATCGA+TGG | + | chr1.4:33099407-33099426 | None:intergenic | 40.0% | |
| TCTGTTTGTATGGAGGGAAA+TGG | - | chr1.4:33100511-33100530 | MS.gene43350:intron | 40.0% | |
| TGAGAAGTTATATACAGCGG+AGG | - | chr1.4:33100928-33100947 | MS.gene43350:CDS | 40.0% | |
| TGATGACTTCCTACAGATTG+TGG | - | chr1.4:33099992-33100011 | MS.gene43350:intron | 40.0% | |
| TGCAGAGAGTAAGAGTAAGA+GGG | - | chr1.4:33095516-33095535 | MS.gene43350:CDS | 40.0% | |
| TTAACACAACGAGTACCCAA+GGG | + | chr1.4:33097021-33097040 | None:intergenic | 40.0% | |
| TTGCAGAGAGTAAGAGTAAG+AGG | - | chr1.4:33095515-33095534 | MS.gene43350:CDS | 40.0% | |
| TTGGAGTTATCATCATCCAC+TGG | + | chr1.4:33096740-33096759 | None:intergenic | 40.0% | |
| TTGTCCCTGTTTGGATAATG+AGG | - | chr1.4:33096054-33096073 | MS.gene43350:intron | 40.0% | |
| TTTGTATGGAGGGAAATGGA+AGG | - | chr1.4:33100515-33100534 | MS.gene43350:intron | 40.0% | |
| ! | CCAGAAAGGAGCATAAAAGA+TGG | + | chr1.4:33099042-33099061 | None:intergenic | 40.0% |
| ! | CCATCTTTTATGCTCCTTTC+TGG | - | chr1.4:33099039-33099058 | MS.gene43350:intron | 40.0% |
| ! | GACATCAATCACTGTTGGTT+TGG | - | chr1.4:33098508-33098527 | MS.gene43350:intron | 40.0% |
| ! | TCTTGTTTCAGGCTCGTAAA+AGG | - | chr1.4:33096702-33096721 | MS.gene43350:intron | 40.0% |
| ! | TGCTACTTGAAATGGATGGT+TGG | - | chr1.4:33098833-33098852 | MS.gene43350:intron | 40.0% |
| ! | TTTACCGGGACAACAAGTTT+TGG | + | chr1.4:33096326-33096345 | None:intergenic | 40.0% |
| !! | CTTTCCAAAACTTGTTGTCC+CGG | - | chr1.4:33096319-33096338 | MS.gene43350:CDS | 40.0% |
| !! | TCAATCACTGTTGGTTTGGT+TGG | - | chr1.4:33098512-33098531 | MS.gene43350:intron | 40.0% |
| !! | TGACACGCATCTATTTTGGA+TGG | - | chr1.4:33100488-33100507 | MS.gene43350:intron | 40.0% |
| !!! | GAGGCTTGGCTTGATTTTTT+TGG | + | chr1.4:33099307-33099326 | None:intergenic | 40.0% |
| !!! | GGCTTGGCTTGATTTTTTTG+GGG | + | chr1.4:33099305-33099324 | None:intergenic | 40.0% |
| !!! | TGATTGGCCTTTTAAGGAAC+AGG | - | chr1.4:33095666-33095685 | MS.gene43350:CDS | 40.0% |
| !!! | TTACCACTGCTTGCTTTTTG+TGG | - | chr1.4:33099241-33099260 | MS.gene43350:CDS | 40.0% |
| AAATGCTAACTAGCTCCCCT+GGG | - | chr1.4:33097715-33097734 | MS.gene43350:intron | 45.0% | |
| AAGAGATATCAGCACCCTAG+CGG | + | chr1.4:33099946-33099965 | None:intergenic | 45.0% | |
| AAGATGAGAGGGCAACTTGA+AGG | + | chr1.4:33100381-33100400 | None:intergenic | 45.0% | |
| ACGAGGGCTTGTAGAACAAA+AGG | + | chr1.4:33098032-33098051 | None:intergenic | 45.0% | |
| AGAACGTGCTCTTGCTGAAT+TGG | - | chr1.4:33095714-33095733 | MS.gene43350:CDS | 45.0% | |
| AGCTCATCTGATCCTATGGA+TGG | - | chr1.4:33101013-33101032 | MS.gene43350:CDS | 45.0% | |
| AGGAGATGACTTCAAGTACC+TGG | + | chr1.4:33098767-33098786 | None:intergenic | 45.0% | |
| ATCAACCTCAACACCAGACA+TGG | + | chr1.4:33101149-33101168 | None:intergenic | 45.0% | |
| ATCCAAACAGGGACAAATGC+AGG | + | chr1.4:33096050-33096069 | None:intergenic | 45.0% | |
| ATCCATAGGATCAGATGAGC+TGG | + | chr1.4:33101014-33101033 | None:intergenic | 45.0% | |
| CAACCAGGCACTTCATATCA+AGG | + | chr1.4:33099469-33099488 | None:intergenic | 45.0% | |
| CAGATTGTGGCTACTGTTAG+GGG | - | chr1.4:33100005-33100024 | MS.gene43350:intron | 45.0% | |
| CAGTAGGGAATTCTTCTCGA+AGG | + | chr1.4:33097234-33097253 | None:intergenic | 45.0% | |
| CGCAACAGTAGGAACACTTT+CGG | + | chr1.4:33096792-33096811 | None:intergenic | 45.0% | |
| GAAAAAAGGGTGAGGAAAGC+AGG | - | chr1.4:33097045-33097064 | MS.gene43350:intron | 45.0% | |
| GAAACTATCTTGGCCTCTGA+AGG | + | chr1.4:33100258-33100277 | None:intergenic | 45.0% | |
| GAACTAGGTGGTGAGGTTAA+AGG | + | chr1.4:33099340-33099359 | None:intergenic | 45.0% | |
| GAAGGGAAAAGGGGAGAAAA+AGG | + | chr1.4:33097125-33097144 | None:intergenic | 45.0% | |
| GAGAGTCTACTCAGAGATGT+AGG | - | chr1.4:33096580-33096599 | MS.gene43350:CDS | 45.0% | |
| GGAGATGACTTCAAGTACCT+GGG | + | chr1.4:33098766-33098785 | None:intergenic | 45.0% | |
| GGATGGTCTGTTTGTATGGA+GGG | - | chr1.4:33100505-33100524 | MS.gene43350:intron | 45.0% | |
| GGCCCTATCTGAACTATCTA+TGG | + | chr1.4:33096929-33096948 | None:intergenic | 45.0% | |
| GGTTAAAGGCAGCTAAATCG+AGG | + | chr1.4:33099326-33099345 | None:intergenic | 45.0% | |
| GTTAACACAACGAGTACCCA+AGG | + | chr1.4:33097022-33097041 | None:intergenic | 45.0% | |
| GTTTCAGGCTCGTAAAAGGA+AGG | - | chr1.4:33096706-33096725 | MS.gene43350:intron | 45.0% | |
| TATGGAGGGAAATGGAAGGT+GGG | - | chr1.4:33100519-33100538 | MS.gene43350:intron | 45.0% | |
| TCAACCTCAACACCAGACAT+GGG | + | chr1.4:33101148-33101167 | None:intergenic | 45.0% | |
| TCCCAATAGAGCCTGAAAGT+CGG | + | chr1.4:33099870-33099889 | None:intergenic | 45.0% | |
| TGATGAACAAGTCAACACCG+AGG | - | chr1.4:33101120-33101139 | MS.gene43350:intron | 45.0% | |
| TGCACTTGAAAGCGACAGTA+GGG | + | chr1.4:33097249-33097268 | None:intergenic | 45.0% | |
| TGGATGGTCTGTTTGTATGG+AGG | - | chr1.4:33100504-33100523 | MS.gene43350:intron | 45.0% | |
| TTCCTGCATTTGTCCCTGTT+TGG | - | chr1.4:33096045-33096064 | MS.gene43350:intron | 45.0% | |
| ! | AGACCTTGATATGAAGTGCC+TGG | - | chr1.4:33099463-33099482 | MS.gene43350:intron | 45.0% |
| ! | CCTTTGCCAGTGATTTGGAT+CGG | - | chr1.4:33096947-33096966 | MS.gene43350:intron | 45.0% |
| ! | CTTTGCCAGTGATTTGGATC+GGG | - | chr1.4:33096948-33096967 | MS.gene43350:intron | 45.0% |
| ! | GGCCAATCATTTGGAATACC+AGG | + | chr1.4:33095655-33095674 | None:intergenic | 45.0% |
| ! | TTCTCTGCTCGCCTCAATTT+TGG | + | chr1.4:33100965-33100984 | None:intergenic | 45.0% |
| ! | TTTCTCCCCTTTTCCCTTCT+GGG | - | chr1.4:33097126-33097145 | MS.gene43350:intron | 45.0% |
| ! | TTTTCTCCCCTTTTCCCTTC+TGG | - | chr1.4:33097125-33097144 | MS.gene43350:intron | 45.0% |
| !! | GCTCTAGAACATGACCAGAA+AGG | + | chr1.4:33099056-33099075 | None:intergenic | 45.0% |
| AACACCAGACATGGGAACCT+CGG | + | chr1.4:33101140-33101159 | None:intergenic | 50.0% | |
| AAGGACACGATGGATGCTGA+CGG | - | chr1.4:33101067-33101086 | MS.gene43350:intron | 50.0% | |
| AAGGCAGCTAAATCGAGGCT+TGG | + | chr1.4:33099321-33099340 | None:intergenic | 50.0% | |
| AATGCTAACTAGCTCCCCTG+GGG | - | chr1.4:33097716-33097735 | MS.gene43350:intron | 50.0% | |
| AGAGATATCAGCACCCTAGC+GGG | + | chr1.4:33099945-33099964 | None:intergenic | 50.0% | |
| AGATCTTGTCCCTCGAGAGT+CGG | - | chr1.4:33097189-33097208 | MS.gene43350:intron | 50.0% | |
| AGCCAGCTCATCTGATCCTA+TGG | - | chr1.4:33101009-33101028 | MS.gene43350:CDS | 50.0% | |
| AGTCCAGCATGACAACACCA+GGG | + | chr1.4:33098673-33098692 | None:intergenic | 50.0% | |
| ATGCCTCCAGTTAGGGATCA+AGG | - | chr1.4:33100228-33100247 | MS.gene43350:intron | 50.0% | |
| CCCAATAGAGCCTGAAAGTC+GGG | + | chr1.4:33099869-33099888 | None:intergenic | 50.0% | |
| CCCGACTTTCAGGCTCTATT+GGG | - | chr1.4:33099866-33099885 | MS.gene43350:intron | 50.0% | |
| CCGATCCAAATCACTGGCAA+AGG | + | chr1.4:33096950-33096969 | None:intergenic | 50.0% | |
| CTGCACTTGAAAGCGACAGT+AGG | + | chr1.4:33097250-33097269 | None:intergenic | 50.0% | |
| CTTCAAGTACCTGGGCTAAC+TGG | + | chr1.4:33098758-33098777 | None:intergenic | 50.0% | |
| GAAATGCTAACTAGCTCCCC+TGG | - | chr1.4:33097714-33097733 | MS.gene43350:intron | 50.0% | |
| GGATCAAGGAGAACCTTCAG+AGG | - | chr1.4:33100242-33100261 | MS.gene43350:intron | 50.0% | |
| GGTTCTCCTTGATCCCTAAC+TGG | + | chr1.4:33100237-33100256 | None:intergenic | 50.0% | |
| GTATGGAGGGAAATGGAAGG+TGG | - | chr1.4:33100518-33100537 | MS.gene43350:intron | 50.0% | |
| GTTAGGGGCAAGCTCAAGAA+GGG | - | chr1.4:33100020-33100039 | MS.gene43350:intron | 50.0% | |
| TACTAGAGGTCCTTGATGCC+CGG | - | chr1.4:33096992-33097011 | MS.gene43350:intron | 50.0% | |
| TAGGGCCTTTGCCAGTGATT+TGG | - | chr1.4:33096942-33096961 | MS.gene43350:intron | 50.0% | |
| TATGCTAACCGGTGCCTCAT+GGG | + | chr1.4:33097873-33097892 | None:intergenic | 50.0% | |
| TCAGGCTCGTAAAAGGAAGG+CGG | - | chr1.4:33096709-33096728 | MS.gene43350:intron | 50.0% | |
| TCCCGACTTTCAGGCTCTAT+TGG | - | chr1.4:33099865-33099884 | MS.gene43350:intron | 50.0% | |
| TCGATGTCAGTGCTAGTGCT+GGG | - | chr1.4:33098591-33098610 | MS.gene43350:intron | 50.0% | |
| TCTCCTTGATCCCTAACTGG+AGG | + | chr1.4:33100234-33100253 | None:intergenic | 50.0% | |
| TGTTAGGGGCAAGCTCAAGA+AGG | - | chr1.4:33100019-33100038 | MS.gene43350:intron | 50.0% | |
| TTAGCTGATCCAGTTAGCCC+AGG | - | chr1.4:33098746-33098765 | MS.gene43350:intron | 50.0% | |
| TTATGCTAACCGGTGCCTCA+TGG | + | chr1.4:33097874-33097893 | None:intergenic | 50.0% | |
| TTGGTTGGACTGCCCAATGT+TGG | - | chr1.4:33098527-33098546 | MS.gene43350:intron | 50.0% | |
| ! | ACTTCTCAACCGACTCTCGA+GGG | + | chr1.4:33097201-33097220 | None:intergenic | 50.0% |
| ! | GTTAAGTTGCTGGATTGCCC+TGG | - | chr1.4:33098653-33098672 | MS.gene43350:intron | 50.0% |
| !! | TAGCACTGACATCGACAGCA+TGG | + | chr1.4:33098586-33098605 | None:intergenic | 50.0% |
| AACACCGAGGTTCCCATGTC+TGG | - | chr1.4:33101133-33101152 | MS.gene43350:intron | 55.0% | |
| AACGAGTACCCAAGGGATCC+CGG | + | chr1.4:33097014-33097033 | None:intergenic | 55.0% | |
| ACTAGAGGTCCTTGATGCCC+GGG | - | chr1.4:33096993-33097012 | MS.gene43350:intron | 55.0% | |
| AGGACACGATGGATGCTGAC+GGG | - | chr1.4:33101068-33101087 | MS.gene43350:intron | 55.0% | |
| AGGCTCGTAAAAGGAAGGCG+GGG | - | chr1.4:33096711-33096730 | MS.gene43350:intron | 55.0% | |
| ATGGATGCTGACGGGAGTGA+CGG | - | chr1.4:33101076-33101095 | MS.gene43350:intron | 55.0% | |
| CAGGCTCGTAAAAGGAAGGC+GGG | - | chr1.4:33096710-33096729 | MS.gene43350:intron | 55.0% | |
| CTCCTTAACTGGTGCCCATG+AGG | - | chr1.4:33097856-33097875 | MS.gene43350:CDS | 55.0% | |
| CTCGAGAGTCGGTTGAGAAG+TGG | - | chr1.4:33097200-33097219 | MS.gene43350:intron | 55.0% | |
| GAGTCCAGCATGACAACACC+AGG | + | chr1.4:33098674-33098693 | None:intergenic | 55.0% | |
| GTCGATGTCAGTGCTAGTGC+TGG | - | chr1.4:33098590-33098609 | MS.gene43350:intron | 55.0% | |
| TCTCAAGCTCTGTCCCGCTA+GGG | - | chr1.4:33099929-33099948 | MS.gene43350:intron | 55.0% | |
| TGCCTCATGGGCACCAGTTA+AGG | + | chr1.4:33097861-33097880 | None:intergenic | 55.0% | |
| TTCTCAAGCTCTGTCCCGCT+AGG | - | chr1.4:33099928-33099947 | MS.gene43350:intron | 55.0% | |
| ! | CACTTCTCAACCGACTCTCG+AGG | + | chr1.4:33097202-33097221 | None:intergenic | 55.0% |
| ! | GACGGTGGTGACGACAATGA+TGG | - | chr1.4:33101094-33101113 | MS.gene43350:intron | 55.0% |
| ! | GGTTCCCATGTCTGGTGTTG+AGG | - | chr1.4:33101141-33101160 | MS.gene43350:intron | 55.0% |
| !! | TTGCCCTGGTGTTGTCATGC+TGG | - | chr1.4:33098667-33098686 | MS.gene43350:intron | 55.0% |
| AACTGGTGCCCATGAGGCAC+CGG | - | chr1.4:33097862-33097881 | MS.gene43350:CDS | 60.0% | |
| ACGAGTACCCAAGGGATCCC+GGG | + | chr1.4:33097013-33097032 | None:intergenic | 60.0% | |
| ACTCCTTAACCCAGTGCCCC+AGG | + | chr1.4:33097735-33097754 | None:intergenic | 60.0% | |
| AGGGGCAAGCTCAAGAAGGG+TGG | - | chr1.4:33100023-33100042 | MS.gene43350:intron | 60.0% | |
| CTCCTTAACCCAGTGCCCCA+GGG | + | chr1.4:33097734-33097753 | None:intergenic | 60.0% | |
| CTTGATGCCCGGGATCCCTT+GGG | - | chr1.4:33097003-33097022 | MS.gene43350:intron | 60.0% | |
| TCCTTAACCCAGTGCCCCAG+GGG | + | chr1.4:33097733-33097752 | None:intergenic | 60.0% | |
| ! | GTGCTAGTGCTGGGTCGACA+AGG | - | chr1.4:33098600-33098619 | MS.gene43350:intron | 60.0% |
| AACTAGCTCCCCTGGGGCAC+TGG | - | chr1.4:33097722-33097741 | MS.gene43350:intron | 65.0% | |
| AAGGAAGGCGGGGTTGCCAG+TGG | - | chr1.4:33096721-33096740 | MS.gene43350:intron | 65.0% | |
| CCAAGGGATCCCGGGCATCA+AGG | + | chr1.4:33097005-33097024 | None:intergenic | 65.0% | |
| CCTTGATGCCCGGGATCCCT+TGG | - | chr1.4:33097002-33097021 | MS.gene43350:intron | 65.0% | |
| GATGCTGACGGGAGTGACGG+TGG | - | chr1.4:33101079-33101098 | MS.gene43350:intron | 65.0% | |
| ! | ACTAGCTCCCCTGGGGCACT+GGG | - | chr1.4:33097723-33097742 | MS.gene43350:intron | 65.0% |
| !! | TCCCCTGGGGCACTGGGTTA+AGG | - | chr1.4:33097729-33097748 | MS.gene43350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 33095416 | 33101174 | 33095416 | ID=MS.gene43350 |
| chr1.4 | mRNA | 33095416 | 33101174 | 33095416 | ID=MS.gene43350.t1;Parent=MS.gene43350 |
| chr1.4 | exon | 33101156 | 33101174 | 33101156 | ID=MS.gene43350.t1.exon1;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33101156 | 33101174 | 33101156 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33100825 | 33101069 | 33100825 | ID=MS.gene43350.t1.exon2;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33100825 | 33101069 | 33100825 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33099766 | 33099877 | 33099766 | ID=MS.gene43350.t1.exon3;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33099766 | 33099877 | 33099766 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33099485 | 33099658 | 33099485 | ID=MS.gene43350.t1.exon4;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33099485 | 33099658 | 33099485 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33099191 | 33099399 | 33099191 | ID=MS.gene43350.t1.exon5;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33099191 | 33099399 | 33099191 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33097823 | 33098087 | 33097823 | ID=MS.gene43350.t1.exon6;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33097823 | 33098087 | 33097823 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33096492 | 33096671 | 33096492 | ID=MS.gene43350.t1.exon7;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33096492 | 33096671 | 33096492 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33096171 | 33096382 | 33096171 | ID=MS.gene43350.t1.exon8;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33096171 | 33096382 | 33096171 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| chr1.4 | exon | 33095416 | 33095799 | 33095416 | ID=MS.gene43350.t1.exon9;Parent=MS.gene43350.t1 |
| chr1.4 | CDS | 33095416 | 33095799 | 33095416 | ID=cds.MS.gene43350.t1;Parent=MS.gene43350.t1 |
| Gene Sequence |
| Protein sequence |
