Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032493.t1 | XP_003597322.1 | 95.5 | 154 | 7 | 0 | 1 | 154 | 1 | 154 | 2.90E-72 | 281.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032493.t1 | Q9AT35 | 85.7 | 154 | 22 | 0 | 1 | 154 | 1 | 154 | 1.3e-65 | 250.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032493.t1 | B7FGR0 | 95.5 | 154 | 7 | 0 | 1 | 154 | 1 | 154 | 2.1e-72 | 281.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032493.t1 | MTR_7g023260 | 98.052 | 154 | 3 | 0 | 1 | 154 | 1 | 154 | 6.91e-106 | 299 |
MS.gene032493.t1 | MTR_2g096340 | 95.455 | 154 | 7 | 0 | 1 | 154 | 1 | 154 | 2.47e-80 | 234 |
MS.gene032493.t1 | MTR_4g063060 | 92.715 | 151 | 10 | 1 | 4 | 154 | 3 | 152 | 5.30e-79 | 231 |
MS.gene032493.t1 | MTR_2g096340 | 91.304 | 161 | 7 | 1 | 1 | 154 | 1 | 161 | 1.81e-77 | 227 |
MS.gene032493.t1 | MTR_4g007840 | 94.595 | 37 | 2 | 0 | 118 | 154 | 36 | 72 | 2.14e-18 | 74.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene032493.t1 | AT3G55280 | 87.662 | 154 | 19 | 0 | 1 | 154 | 1 | 154 | 8.84e-73 | 215 |
MS.gene032493.t1 | AT3G55280 | 87.662 | 154 | 19 | 0 | 1 | 154 | 1 | 154 | 8.84e-73 | 215 |
MS.gene032493.t1 | AT2G39460 | 87.013 | 154 | 20 | 0 | 1 | 154 | 1 | 154 | 1.44e-68 | 204 |
MS.gene032493.t1 | AT2G39460 | 87.013 | 154 | 20 | 0 | 1 | 154 | 1 | 154 | 1.44e-68 | 204 |
MS.gene032493.t1 | AT3G55280 | 85.065 | 154 | 17 | 1 | 1 | 154 | 1 | 148 | 8.02e-68 | 202 |
Find 29 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACAGCCTTGGCAGTCTTTA+AGG | 0.104571 | 7.2:+76127326 | None:intergenic |
GCACTAATGCGAGGATATTT+AGG | 0.181938 | 7.2:+76127213 | None:intergenic |
GTCTTTAAGGCCTGAGCTTT+GGG | 0.199310 | 7.2:+76127339 | None:intergenic |
GATCAAAGTGTTAACTTTCT+TGG | 0.222903 | 7.2:+76127023 | None:intergenic |
CTTTCCCTCGACAATGTCTT+TGG | 0.236448 | 7.2:+76127240 | None:intergenic |
GAAGAAAATGTATGATATTC+AGG | 0.295377 | 7.2:-76127046 | MS.gene032493:CDS |
AGTCTTTAAGGCCTGAGCTT+TGG | 0.305470 | 7.2:+76127338 | None:intergenic |
TTGGATGTTGCCAACAAAAT+TGG | 0.308714 | 7.2:-76126624 | MS.gene032493:CDS |
CACTAATGCGAGGATATTTA+GGG | 0.322035 | 7.2:+76127214 | None:intergenic |
GAAATTTAAGAATTTGATAA+TGG | 0.324323 | 7.2:+76127169 | None:intergenic |
TAATGGTCCAACTTGTTTCT+TGG | 0.351377 | 7.2:+76127186 | None:intergenic |
ATTGCAGACTCGGTAGTTAG+AGG | 0.366975 | 7.2:+76127147 | None:intergenic |
ACTGCCAAGGCTGTGAAATC+TGG | 0.398327 | 7.2:-76127318 | MS.gene032493:CDS |
ACATCCAATGCATCATAATC+TGG | 0.440561 | 7.2:+76126639 | None:intergenic |
CCCTCGACAATGTCTTTGGC+CGG | 0.444379 | 7.2:+76127244 | None:intergenic |
AGAAAGTTAACACTTTGATC+AGG | 0.468162 | 7.2:-76127020 | MS.gene032493:intron |
TAGGCTTTCTTCGTACCATC+AGG | 0.478742 | 7.2:+76126675 | None:intergenic |
TTGACCAGATTTCACAGCCT+TGG | 0.502610 | 7.2:+76127314 | None:intergenic |
AAAAGCTGATCCCAAAGCTC+AGG | 0.521590 | 7.2:-76127349 | MS.gene032493:CDS |
GACTCCAGATTATGATGCAT+TGG | 0.521909 | 7.2:-76126643 | MS.gene032493:CDS |
CAAAGACATTGTCGAGGGAA+AGG | 0.529322 | 7.2:-76127239 | MS.gene032493:CDS |
GTACGAAGAAAGCCTATGTT+CGG | 0.555731 | 7.2:-76126668 | MS.gene032493:CDS |
TGCAACACCAAGAAACAAGT+TGG | 0.555850 | 7.2:-76127193 | MS.gene032493:CDS |
GAACAACTGTCACATTTCAC+CGG | 0.615944 | 7.2:-76127263 | MS.gene032493:CDS |
TCAGGCCTTAAAGACTGCCA+AGG | 0.618577 | 7.2:-76127331 | MS.gene032493:CDS |
CTTGGTGTTGCACTAATGCG+AGG | 0.624057 | 7.2:+76127204 | None:intergenic |
ATCTGGAGTCAACCGAACAT+AGG | 0.626307 | 7.2:+76126656 | None:intergenic |
ACCGGCCAAAGACATTGTCG+AGG | 0.638021 | 7.2:-76127245 | MS.gene032493:CDS |
CCGGCCAAAGACATTGTCGA+GGG | 0.661456 | 7.2:-76127244 | MS.gene032493:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATAAATAAAAAATCACATT+TGG | + | chr7.2:76126719-76126738 | None:intergenic | 10.0% |
!! | TTTATATTTAATTATTATGC+AGG | - | chr7.2:76128198-76128217 | MS.gene032493:intron | 10.0% |
!! | CATAAATTGATATTGATATA+TGG | - | chr7.2:76126843-76126862 | MS.gene032493:intron | 15.0% |
!! | CATATATCAATATCAATTTA+TGG | + | chr7.2:76126845-76126864 | None:intergenic | 15.0% |
!! | GAAATTTAAGAATTTGATAA+TGG | + | chr7.2:76128416-76128435 | None:intergenic | 15.0% |
!!! | ATTTTATTCAAACCTTTATT+TGG | - | chr7.2:76127498-76127517 | MS.gene032493:intron | 15.0% |
!!! | AGACATTGATTAAACTTAAA+TGG | - | chr7.2:76127236-76127255 | MS.gene032493:CDS | 20.0% |
!!! | GTCATATTTTCTTTAAATCA+GGG | + | chr7.2:76127126-76127145 | None:intergenic | 20.0% |
!!! | GTTTTTTTTACAAGATATCT+TGG | - | chr7.2:76126974-76126993 | MS.gene032493:intron | 20.0% |
!!! | TAGATGAAATTTTTGATTCA+TGG | - | chr7.2:76128163-76128182 | MS.gene032493:intron | 20.0% |
!!! | TAGTTTTTGAGTGAATAAAT+AGG | - | chr7.2:76127822-76127841 | MS.gene032493:intron | 20.0% |
!!! | TATACGTTTTGAACAAAAAT+CGG | + | chr7.2:76127706-76127725 | None:intergenic | 20.0% |
!!! | TTCTAGCAGTTAATTTTTTT+TGG | - | chr7.2:76126692-76126711 | MS.gene032493:intron | 20.0% |
! | CACTCAAAAACTATTGAAAA+GGG | + | chr7.2:76127815-76127834 | None:intergenic | 25.0% |
! | CTTATGAATCAGTAGTTAAA+TGG | + | chr7.2:76128031-76128050 | None:intergenic | 25.0% |
! | GAAGAAAATGTATGATATTC+AGG | - | chr7.2:76128536-76128555 | MS.gene032493:intron | 25.0% |
! | GGTTAGTATATCAAATACAA+AGG | + | chr7.2:76128859-76128878 | None:intergenic | 25.0% |
! | GTTATATACTACATTGCTAA+TGG | - | chr7.2:76127623-76127642 | MS.gene032493:intron | 25.0% |
! | TCAAAATAAACTGATCAAAG+CGG | + | chr7.2:76127205-76127224 | None:intergenic | 25.0% |
! | TCACTCAAAAACTATTGAAA+AGG | + | chr7.2:76127816-76127835 | None:intergenic | 25.0% |
! | TTGATATTGATATATGGCTA+AGG | - | chr7.2:76126849-76126868 | MS.gene032493:intron | 25.0% |
!! | ATTTTATTCAAACCTGTGTT+AGG | - | chr7.2:76127850-76127869 | MS.gene032493:intron | 25.0% |
!! | GGTCATATTTTCTTTAAATC+AGG | + | chr7.2:76127127-76127146 | None:intergenic | 25.0% |
!! | TTAGATGATACCAATTTTGT+TGG | + | chr7.2:76128971-76128990 | None:intergenic | 25.0% |
!! | TTTATTTGCTAATGTTGATG+TGG | - | chr7.2:76126737-76126756 | MS.gene032493:intron | 25.0% |
!! | TTTTAACAGATTCGTCTTTA+TGG | + | chr7.2:76128742-76128761 | None:intergenic | 25.0% |
!! | TTTTGAACAAAAATCGGTTA+AGG | + | chr7.2:76127700-76127719 | None:intergenic | 25.0% |
!! | TTTTGTGAATTCTGTAGAAT+TGG | - | chr7.2:76127265-76127284 | MS.gene032493:CDS | 25.0% |
!!! | ACATGGTTAATGCATTTTTT+GGG | - | chr7.2:76126763-76126782 | MS.gene032493:intron | 25.0% |
!!! | TATAAGTTTTGAACGGAAAT+TGG | + | chr7.2:76128074-76128093 | None:intergenic | 25.0% |
!!! | TTGTTTGATTTTGTTCTCTT+TGG | - | chr7.2:76126792-76126811 | MS.gene032493:intron | 25.0% |
AAAACTAAAAACTCACCCTT+TGG | + | chr7.2:76126626-76126645 | None:intergenic | 30.0% | |
AACTACTAAACAAAACCAAC+AGG | + | chr7.2:76128698-76128717 | None:intergenic | 30.0% | |
AAGAAAAGAAAGGACAAAAG+AGG | + | chr7.2:76128880-76128899 | None:intergenic | 30.0% | |
ACAGGCTAAACAAAAAATGT+TGG | - | chr7.2:76127542-76127561 | MS.gene032493:intron | 30.0% | |
AGAAAGTTAACACTTTGATC+AGG | - | chr7.2:76128562-76128581 | MS.gene032493:intron | 30.0% | |
AGTACTGTCTTATAAATGAG+TGG | + | chr7.2:76127365-76127384 | None:intergenic | 30.0% | |
ATGCAGAAATGGTAGAAAAA+AGG | + | chr7.2:76127161-76127180 | None:intergenic | 30.0% | |
ATTATAGTGCTTCAGAAGAT+CGG | - | chr7.2:76128802-76128821 | MS.gene032493:intron | 30.0% | |
CTTATAAATGAGTGGTTAAG+AGG | + | chr7.2:76127357-76127376 | None:intergenic | 30.0% | |
GTTGTATACTACATTGCTAA+GGG | - | chr7.2:76127990-76128009 | MS.gene032493:intron | 30.0% | |
TCTTTAAATCAGGGTCTATT+TGG | + | chr7.2:76127117-76127136 | None:intergenic | 30.0% | |
TGAATTCTGTAGAATTGGAT+TGG | - | chr7.2:76127270-76127289 | MS.gene032493:CDS | 30.0% | |
TGGATTCAAGTAGATAGATT+TGG | + | chr7.2:76128722-76128741 | None:intergenic | 30.0% | |
TGTTGTATACTACATTGCTA+AGG | - | chr7.2:76127989-76128008 | MS.gene032493:intron | 30.0% | |
TGTTTCCATGAATCAAACAT+TGG | + | chr7.2:76127789-76127808 | None:intergenic | 30.0% | |
TTAACACTTTGATCAGGTAA+TGG | - | chr7.2:76128568-76128587 | MS.gene032493:intron | 30.0% | |
TTCCGTTCAAAACTTATAAC+TGG | - | chr7.2:76128076-76128095 | MS.gene032493:intron | 30.0% | |
! | AATTTTCTTCATTGCAGACT+CGG | + | chr7.2:76128448-76128467 | None:intergenic | 30.0% |
! | GATCAAAGTGTTAACTTTCT+TGG | + | chr7.2:76128562-76128581 | None:intergenic | 30.0% |
! | TAATTTTCTTCTTGTCAGCA+CGG | + | chr7.2:76128506-76128525 | None:intergenic | 30.0% |
!! | TTTTTGTTTAGCCTGTATCT+AGG | + | chr7.2:76127538-76127557 | None:intergenic | 30.0% |
!!! | CACATGGTTAATGCATTTTT+TGG | - | chr7.2:76126762-76126781 | MS.gene032493:intron | 30.0% |
!!! | TATATGGCTAAGGTTTTGTT+TGG | - | chr7.2:76126859-76126878 | MS.gene032493:intron | 30.0% |
!!! | TGCCAGTTATAAGTTTTGAA+CGG | + | chr7.2:76128081-76128100 | None:intergenic | 30.0% |
AAACACAACTCATGCAGAAA+TGG | + | chr7.2:76127172-76127191 | None:intergenic | 35.0% | |
ACATCCAATGCATCATAATC+TGG | + | chr7.2:76128946-76128965 | None:intergenic | 35.0% | |
ACCACTCGAAATCCAAATAA+AGG | + | chr7.2:76127513-76127532 | None:intergenic | 35.0% | |
AGACGAATCTGTTAAAACTC+AGG | - | chr7.2:76128745-76128764 | MS.gene032493:intron | 35.0% | |
AGATGACGATGTTTGATTCA+TGG | - | chr7.2:76127426-76127445 | MS.gene032493:intron | 35.0% | |
AGATGCCAATGTTTGATTCA+TGG | - | chr7.2:76127781-76127800 | MS.gene032493:intron | 35.0% | |
CACTAATGCGAGGATATTTA+GGG | + | chr7.2:76128371-76128390 | None:intergenic | 35.0% | |
CTGATGAATCAGCAGTTAAA+TGG | + | chr7.2:76127663-76127682 | None:intergenic | 35.0% | |
TAAACACTTGTGAGACTGTT+CGG | + | chr7.2:76127065-76127084 | None:intergenic | 35.0% | |
TAATGTTGATGTGGTTCACA+TGG | - | chr7.2:76126746-76126765 | MS.gene032493:intron | 35.0% | |
TTGCAAATTGCAAGTATCTC+AGG | + | chr7.2:76127891-76127910 | None:intergenic | 35.0% | |
TTGGATGTTGCCAACAAAAT+TGG | - | chr7.2:76128958-76128977 | MS.gene032493:intron | 35.0% | |
! | ACCTTTATTTGGATTTCGAG+TGG | - | chr7.2:76127509-76127528 | MS.gene032493:intron | 35.0% |
! | AGAAAAAAGGCACAACTACA+CGG | + | chr7.2:76127148-76127167 | None:intergenic | 35.0% |
! | TAATGGTCCAACTTGTTTCT+TGG | + | chr7.2:76128399-76128418 | None:intergenic | 35.0% |
! | TGTCCTTTCTTTTCTTTTGC+AGG | - | chr7.2:76128884-76128903 | MS.gene032493:intron | 35.0% |
!! | GTTTTGAACGGAAATTGGTT+AGG | + | chr7.2:76128069-76128088 | None:intergenic | 35.0% |
AAACACTTGTGAGACTGTTC+GGG | + | chr7.2:76127064-76127083 | None:intergenic | 40.0% | |
ACTAAAAACTCACCCTTTGG+AGG | + | chr7.2:76126623-76126642 | None:intergenic | 40.0% | |
AGCACGTATGCAATCTATTC+TGG | + | chr7.2:76127959-76127978 | None:intergenic | 40.0% | |
AGGCCTGCAAAAGAAAAGAA+AGG | + | chr7.2:76128890-76128909 | None:intergenic | 40.0% | |
GAACAACTGTCACATTTCAC+CGG | - | chr7.2:76128319-76128338 | MS.gene032493:intron | 40.0% | |
GACAAGTAACTAGCTGATGA+CGG | + | chr7.2:76127730-76127749 | None:intergenic | 40.0% | |
GACTCCAGATTATGATGCAT+TGG | - | chr7.2:76128939-76128958 | MS.gene032493:intron | 40.0% | |
GCACTAATGCGAGGATATTT+AGG | + | chr7.2:76128372-76128391 | None:intergenic | 40.0% | |
GTACGAAGAAAGCCTATGTT+CGG | - | chr7.2:76128914-76128933 | MS.gene032493:intron | 40.0% | |
TCACATCAAAGTCCTAACAC+AGG | + | chr7.2:76127865-76127884 | None:intergenic | 40.0% | |
TCATCAGCTAGTTACTTGTC+TGG | - | chr7.2:76127730-76127749 | MS.gene032493:intron | 40.0% | |
TGCAACACCAAGAAACAAGT+TGG | - | chr7.2:76128389-76128408 | MS.gene032493:intron | 40.0% | |
! | ATTGGTTAGGAAGTGCAACA+CGG | + | chr7.2:76128056-76128075 | None:intergenic | 40.0% |
! | TACTGCACTCATTTGCTAGA+TGG | - | chr7.2:76127381-76127400 | MS.gene032493:intron | 40.0% |
! | TTCGCGCTCTAAATTCAGTT+GGG | + | chr7.2:76128661-76128680 | None:intergenic | 40.0% |
!! | TCAACTATGCACTCTAGGAT+TGG | - | chr7.2:76127570-76127589 | MS.gene032493:intron | 40.0% |
AAAAGCTGATCCCAAAGCTC+AGG | - | chr7.2:76128233-76128252 | MS.gene032493:intron | 45.0% | |
ATGGACATGACAGTCTGTCT+TGG | - | chr7.2:76128587-76128606 | MS.gene032493:intron | 45.0% | |
CAAAGACATTGTCGAGGGAA+AGG | - | chr7.2:76128343-76128362 | MS.gene032493:intron | 45.0% | |
CGTGTTCAACTATGCACTCT+AGG | - | chr7.2:76127565-76127584 | MS.gene032493:intron | 45.0% | |
CTTTCCCTCGACAATGTCTT+TGG | + | chr7.2:76128345-76128364 | None:intergenic | 45.0% | |
TAGGCTTTCTTCGTACCATC+AGG | + | chr7.2:76128910-76128929 | None:intergenic | 45.0% | |
TTGACCAGATTTCACAGCCT+TGG | + | chr7.2:76128271-76128290 | None:intergenic | 45.0% | |
! | ACACTAGTTGCTTTGCCTGT+TGG | - | chr7.2:76128680-76128699 | MS.gene032493:intron | 45.0% |
! | ATCTGGAGTCAACCGAACAT+AGG | + | chr7.2:76128929-76128948 | None:intergenic | 45.0% |
! | ATTGCAGACTCGGTAGTTAG+AGG | + | chr7.2:76128438-76128457 | None:intergenic | 45.0% |
! | CTTTTCTTTTGCAGGCCTGA+TGG | - | chr7.2:76128892-76128911 | MS.gene032493:intron | 45.0% |
! | GTTCGCGCTCTAAATTCAGT+TGG | + | chr7.2:76128662-76128681 | None:intergenic | 45.0% |
! | TTGGTTAGGAAGTGCAACAC+GGG | + | chr7.2:76128055-76128074 | None:intergenic | 45.0% |
!! | AGTCTTTAAGGCCTGAGCTT+TGG | + | chr7.2:76128247-76128266 | None:intergenic | 45.0% |
!! | GTCTTTAAGGCCTGAGCTTT+GGG | + | chr7.2:76128246-76128265 | None:intergenic | 45.0% |
!! | AAAAAAAAAATTATTGAAAA+GGG | + | chr7.2:76127460-76127479 | None:intergenic | 5.0% |
!! | TAAAAAAAAAATTATTGAAA+AGG | + | chr7.2:76127461-76127480 | None:intergenic | 5.0% |
!!! | TTTTTTTTTTATGAATTAAT+AGG | - | chr7.2:76127470-76127489 | MS.gene032493:intron | 5.0% |
ACTGCCAAGGCTGTGAAATC+TGG | - | chr7.2:76128264-76128283 | MS.gene032493:intron | 50.0% | |
CACAGCCTTGGCAGTCTTTA+AGG | + | chr7.2:76128259-76128278 | None:intergenic | 50.0% | |
TCAGGCCTTAAAGACTGCCA+AGG | - | chr7.2:76128251-76128270 | MS.gene032493:intron | 50.0% | |
TCGAGTGGTTGCCTAGATAC+AGG | - | chr7.2:76127524-76127543 | MS.gene032493:intron | 50.0% | |
!! | CTTGGTGTTGCACTAATGCG+AGG | + | chr7.2:76128381-76128400 | None:intergenic | 50.0% |
ACCGGCCAAAGACATTGTCG+AGG | - | chr7.2:76128337-76128356 | MS.gene032493:intron | 55.0% | |
CCCTCGACAATGTCTTTGGC+CGG | + | chr7.2:76128341-76128360 | None:intergenic | 55.0% | |
CCGGCCAAAGACATTGTCGA+GGG | - | chr7.2:76128338-76128357 | MS.gene032493:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 76126614 | 76128990 | 76126614 | ID=MS.gene032493 |
chr7.2 | mRNA | 76126614 | 76128990 | 76126614 | ID=MS.gene032493.t1;Parent=MS.gene032493 |
chr7.2 | exon | 76128975 | 76128990 | 76128975 | ID=MS.gene032493.t1.exon1;Parent=MS.gene032493.t1 |
chr7.2 | CDS | 76128975 | 76128990 | 76128975 | ID=cds.MS.gene032493.t1;Parent=MS.gene032493.t1 |
chr7.2 | exon | 76127021 | 76127384 | 76127021 | ID=MS.gene032493.t1.exon2;Parent=MS.gene032493.t1 |
chr7.2 | CDS | 76127021 | 76127384 | 76127021 | ID=cds.MS.gene032493.t1;Parent=MS.gene032493.t1 |
chr7.2 | exon | 76126614 | 76126698 | 76126614 | ID=MS.gene032493.t1.exon3;Parent=MS.gene032493.t1 |
chr7.2 | CDS | 76126614 | 76126698 | 76126614 | ID=cds.MS.gene032493.t1;Parent=MS.gene032493.t1 |
Gene Sequence |
Protein sequence |