AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006341


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006341.t1 MTR_1g101600 96.667 180 6 0 1 180 23 202 8.94e-130 362
MS.gene006341.t1 MTR_6g466130 62.983 181 64 2 2 179 49 229 8.38e-72 216
MS.gene006341.t1 MTR_6g466000 59.574 188 65 3 2 178 40 227 8.14e-71 214
MS.gene006341.t1 MTR_6g465690 68.553 159 50 0 2 160 46 204 2.32e-70 214
MS.gene006341.t1 MTR_6g465460 62.069 174 59 3 2 172 37 206 1.06e-68 210
MS.gene006341.t1 MTR_6g465420 60.345 174 64 2 2 170 37 210 4.52e-68 208
MS.gene006341.t1 MTR_6g465530 59.563 183 68 1 2 178 16 198 4.69e-68 206
MS.gene006341.t1 MTR_6g465430 61.582 177 57 3 2 170 37 210 1.79e-67 206
MS.gene006341.t1 MTR_6g465450 62.286 175 60 2 2 170 37 211 3.85e-65 200
MS.gene006341.t1 MTR_6g465510 56.995 193 67 2 2 178 16 208 6.86e-61 188
MS.gene006341.t1 MTR_6g465850 45.333 225 66 5 13 180 57 281 4.98e-56 178
MS.gene006341.t1 MTR_5g010930 48.241 199 79 5 2 180 32 226 1.22e-55 175
MS.gene006341.t1 MTR_5g010910 47.692 195 84 4 2 180 32 224 1.91e-53 169
MS.gene006341.t1 MTR_5g010940 47.692 195 84 4 2 180 37 229 2.06e-53 170
MS.gene006341.t1 MTR_6g466020 49.714 175 67 3 2 175 26 180 1.19e-49 159
MS.gene006341.t1 MTR_4g102660 78.125 96 18 2 2 94 27 122 1.15e-46 152
MS.gene006341.t1 MTR_6g465990 48.404 188 66 4 2 178 26 193 6.58e-44 144
MS.gene006341.t1 MTR_3g110205 60.185 108 40 2 9 113 32 139 7.25e-37 126
MS.gene006341.t1 MTR_7g117690 68.750 80 25 0 14 93 23 102 3.46e-34 119
MS.gene006341.t1 MTR_2g085015 57.426 101 41 2 13 111 41 141 3.85e-34 120
MS.gene006341.t1 MTR_2g101340 61.957 92 34 1 3 93 24 115 7.42e-34 119
MS.gene006341.t1 MTR_5g012910 67.089 79 26 0 15 93 24 102 1.53e-33 117
MS.gene006341.t1 MTR_8g102800 64.706 85 30 0 9 93 27 111 4.24e-33 118
MS.gene006341.t1 MTR_7g046260 65.432 81 28 0 13 93 55 135 5.14e-33 117
MS.gene006341.t1 MTR_8g006410 65.385 78 27 0 16 93 49 126 9.58e-33 116
MS.gene006341.t1 MTR_8g013860 65.823 79 27 0 15 93 43 121 3.06e-32 115
MS.gene006341.t1 MTR_8g027465 60.000 95 32 2 2 93 25 116 1.18e-30 110
MS.gene006341.t1 MTR_4g100650 54.545 110 50 0 15 124 70 179 3.71e-30 111
MS.gene006341.t1 MTR_6g088405 64.103 78 28 0 16 93 41 118 5.53e-30 109
MS.gene006341.t1 MTR_4g102670 62.025 79 29 1 15 93 11 88 3.89e-29 105
MS.gene006341.t1 MTR_6g088425 62.791 86 32 0 15 100 45 130 4.11e-25 97.4
MS.gene006341.t1 MTR_4g035430 51.546 97 42 1 4 100 22 113 8.72e-25 96.3
MS.gene006341.t1 MTR_1g006660 56.383 94 37 1 4 93 28 121 1.04e-23 94.4
MS.gene006341.t1 MTR_5g008590 61.628 86 33 0 19 104 11 96 2.39e-22 89.0
MS.gene006341.t1 MTR_5g008550 43.902 123 59 1 19 141 21 133 6.84e-22 88.2
MS.gene006341.t1 MTR_5g008470 46.429 84 45 0 21 104 77 160 1.12e-19 82.0
MS.gene006341.t1 MTR_3g102100 64.286 56 20 0 19 74 45 100 1.26e-19 81.6
MS.gene006341.t1 MTR_1g019110 46.512 86 43 1 19 104 44 126 1.52e-19 81.6
MS.gene006341.t1 MTR_1g014820 40.367 109 61 1 18 122 26 134 2.73e-18 80.1
MS.gene006341.t1 MTR_5g016750 62.500 56 21 0 19 74 25 80 3.30e-18 78.2
MS.gene006341.t1 MTR_1g060910 44.660 103 35 2 1 101 1 83 5.30e-18 77.4
MS.gene006341.t1 MTR_1g101550 37.288 177 95 5 19 180 57 232 6.76e-18 78.6
MS.gene006341.t1 MTR_5g083340 53.947 76 26 1 19 94 85 151 7.13e-18 80.5
MS.gene006341.t1 MTR_2g435590 52.000 75 33 1 3 77 83 154 1.22e-17 78.2
MS.gene006341.t1 MTR_1g014780 43.158 95 47 1 18 105 37 131 1.88e-17 77.0
MS.gene006341.t1 MTR_3g105510 43.529 85 48 0 19 103 37 121 3.01e-17 77.0
MS.gene006341.t1 MTR_1g014860 37.069 116 66 1 14 122 17 132 8.39e-17 75.1
MS.gene006341.t1 MTR_2g043050 45.882 85 46 0 18 102 18 102 8.55e-17 75.1
MS.gene006341.t1 MTR_1g090170 40.909 110 58 2 14 122 147 250 1.01e-16 76.3
MS.gene006341.t1 MTR_7g020980 55.000 60 27 0 15 74 47 106 2.06e-16 73.2
MS.gene006341.t1 MTR_5g083330 52.055 73 35 0 4 76 20 92 2.37e-16 75.1
MS.gene006341.t1 MTR_1g028560 59.649 57 23 0 19 75 115 171 2.58e-16 75.5
MS.gene006341.t1 MTR_7g021010 55.000 60 27 0 15 74 8 67 2.77e-16 72.0
MS.gene006341.t1 MTR_1g090170 55.556 63 28 0 14 76 234 296 2.93e-16 75.9
MS.gene006341.t1 MTR_2g105380 48.611 72 37 0 7 78 105 176 2.94e-16 75.5
MS.gene006341.t1 MTR_8g090350 48.684 76 36 1 18 90 112 187 3.15e-16 74.7
MS.gene006341.t1 MTR_1g014800 38.462 117 60 2 18 122 30 146 3.41e-16 73.6
MS.gene006341.t1 MTR_2g090235 59.322 59 24 0 18 76 217 275 3.97e-16 75.5
MS.gene006341.t1 MTR_4g086220 62.500 56 21 0 19 74 96 151 4.49e-16 73.6
MS.gene006341.t1 MTR_2g043030 37.037 108 68 0 1 108 1 108 4.57e-16 72.8
MS.gene006341.t1 MTR_7g021010 55.000 60 27 0 15 74 47 106 4.97e-16 72.4
MS.gene006341.t1 MTR_3g074130 46.429 84 34 1 18 90 149 232 6.60e-16 74.3
MS.gene006341.t1 MTR_1g087920 44.872 78 43 0 9 86 67 144 6.65e-16 73.9
MS.gene006341.t1 MTR_5g082950 55.405 74 25 2 3 74 54 121 8.08e-16 73.9
MS.gene006341.t1 MTR_3g105480 43.373 83 47 0 21 103 33 115 8.19e-16 72.8
MS.gene006341.t1 MTR_2g015050 38.462 104 54 3 8 110 125 219 1.22e-15 73.2
MS.gene006341.t1 MTR_4g086165 60.714 56 22 0 19 74 82 137 1.39e-15 71.6
MS.gene006341.t1 MTR_4g086190 60.714 56 22 0 19 74 96 151 1.39e-15 72.0
MS.gene006341.t1 MTR_4g086160 60.714 56 22 0 19 74 96 151 1.61e-15 72.0
MS.gene006341.t1 MTR_8g092460 55.932 59 26 0 19 77 145 203 1.68e-15 73.2
MS.gene006341.t1 MTR_5g062700 59.322 59 24 0 18 76 172 230 2.84e-15 72.8
MS.gene006341.t1 MTR_2g014300 62.500 56 21 0 19 74 15 70 3.27e-15 70.1
MS.gene006341.t1 MTR_2g089170 60.714 56 22 0 19 74 65 120 3.63e-15 70.1
MS.gene006341.t1 MTR_3g053690 58.333 60 25 0 15 74 23 82 4.17e-15 70.9
MS.gene006341.t1 MTR_1g074310 59.649 57 22 1 19 74 21 77 4.52e-15 68.9
MS.gene006341.t1 MTR_5g009620 53.623 69 26 1 12 74 99 167 4.61e-15 71.6
MS.gene006341.t1 MTR_4g114570 58.929 56 23 0 19 74 7 62 5.00e-15 70.5
MS.gene006341.t1 MTR_2g078680 60.714 56 22 0 19 74 31 86 5.81e-15 70.1
MS.gene006341.t1 MTR_2g438180 61.017 59 22 1 19 76 14 72 6.44e-15 68.2
MS.gene006341.t1 MTR_4g010640 58.929 56 23 0 19 74 7 62 6.71e-15 70.1
MS.gene006341.t1 MTR_0939s0010 58.929 56 23 0 19 74 65 120 7.33e-15 69.7
MS.gene006341.t1 MTR_7g092190 60.714 56 22 0 19 74 30 85 8.11e-15 70.9
MS.gene006341.t1 MTR_8g022820 48.571 70 36 0 9 78 113 182 1.25e-14 70.9
MS.gene006341.t1 MTR_8g022820 48.571 70 36 0 9 78 114 183 1.25e-14 70.9
MS.gene006341.t1 MTR_8g022820 48.571 70 36 0 9 78 114 183 1.25e-14 70.9
MS.gene006341.t1 MTR_3g072610 47.191 89 43 2 19 103 25 113 1.29e-14 69.3
MS.gene006341.t1 MTR_8g032610 56.140 57 25 0 19 75 27 83 1.34e-14 70.5
MS.gene006341.t1 MTR_2g103700 57.143 56 24 0 19 74 7 62 1.39e-14 68.6
MS.gene006341.t1 MTR_5g008540 50.820 61 30 0 21 81 26 86 1.71e-14 66.2
MS.gene006341.t1 MTR_7g028925 51.515 66 29 1 18 83 28 90 2.02e-14 65.9
MS.gene006341.t1 MTR_2g043040 42.353 85 49 0 18 102 18 102 2.09e-14 68.9
MS.gene006341.t1 MTR_3g090760 47.761 67 35 0 19 85 113 179 4.58e-14 69.3
MS.gene006341.t1 MTR_4g111915 49.153 59 30 0 19 77 53 111 5.31e-14 65.9
MS.gene006341.t1 MTR_3g106290 60.714 56 22 0 19 74 8 63 7.17e-14 66.6
MS.gene006341.t1 MTR_4g078710 57.143 56 24 0 19 74 28 83 7.20e-14 67.4
MS.gene006341.t1 MTR_2g016730 54.237 59 27 0 16 74 20 78 7.93e-14 68.6
MS.gene006341.t1 MTR_1g048610 56.140 57 24 1 19 74 89 145 8.69e-14 67.4
MS.gene006341.t1 MTR_2g014340 57.143 56 24 0 19 74 19 74 8.97e-14 66.6
MS.gene006341.t1 MTR_1g070070 56.140 57 24 1 19 74 21 77 1.04e-13 65.5
MS.gene006341.t1 MTR_5g008790 53.333 60 26 1 19 76 18 77 1.15e-13 65.9
MS.gene006341.t1 MTR_4g008860 60.714 56 22 0 19 74 8 63 1.28e-13 66.2
MS.gene006341.t1 MTR_1g090290 53.226 62 26 2 14 74 110 169 2.14e-13 65.9
MS.gene006341.t1 MTR_4g100450 48.649 74 37 1 2 74 137 210 2.21e-13 67.0
MS.gene006341.t1 MTR_6g029180 47.945 73 37 1 3 75 18 89 2.43e-13 67.0
MS.gene006341.t1 MTR_4g100420 57.895 57 23 1 19 74 157 213 2.59e-13 67.0
MS.gene006341.t1 MTR_7g085810 53.571 56 26 0 19 74 30 85 2.70e-13 66.2
MS.gene006341.t1 MTR_4g112490 49.153 59 30 0 19 77 53 111 2.82e-13 65.5
MS.gene006341.t1 MTR_1g074230 57.895 57 23 1 19 74 19 75 3.41e-13 63.9
MS.gene006341.t1 MTR_8g085960 43.243 74 41 1 4 77 11 83 3.60e-13 65.9
MS.gene006341.t1 MTR_6g012970 53.571 56 26 0 19 74 38 93 5.72e-13 66.2
MS.gene006341.t1 MTR_2g043020 35.455 110 69 1 18 127 18 125 6.00e-13 64.7
MS.gene006341.t1 MTR_4g088005 46.377 69 36 1 7 74 45 113 6.56e-13 62.8
MS.gene006341.t1 MTR_5g085070 57.143 56 24 0 19 74 51 106 7.41e-13 65.5
MS.gene006341.t1 MTR_6g041970 40.000 95 44 1 19 113 18 99 8.42e-13 61.6
MS.gene006341.t1 MTR_8g099215 46.835 79 36 1 2 74 84 162 9.29e-13 65.5
MS.gene006341.t1 MTR_1g074250 50.820 61 28 1 16 74 16 76 9.48e-13 62.4
MS.gene006341.t1 MTR_7g011630 53.571 56 26 0 19 74 42 97 9.59e-13 65.9
MS.gene006341.t1 MTR_5g075570 48.333 60 31 0 15 74 120 179 1.04e-12 65.1
MS.gene006341.t1 MTR_5g085100 49.315 73 34 1 2 74 32 101 1.07e-12 65.1
MS.gene006341.t1 MTR_7g081805 54.386 57 25 1 19 74 61 117 1.56e-12 63.5
MS.gene006341.t1 MTR_7g081815 54.386 57 25 1 19 74 61 117 1.77e-12 63.5
MS.gene006341.t1 MTR_8g069360 53.571 56 26 0 19 74 44 99 3.32e-12 64.3
MS.gene006341.t1 MTR_7g096750 56.140 57 24 1 19 74 20 76 3.87e-12 61.2
MS.gene006341.t1 MTR_4g054360 49.231 65 32 1 11 74 116 180 4.20e-12 63.2
MS.gene006341.t1 MTR_2g015040 52.632 57 26 1 19 74 63 119 5.41e-12 61.2
MS.gene006341.t1 MTR_8g006840 52.632 57 26 1 19 74 125 181 5.94e-12 62.0
MS.gene006341.t1 MTR_1g069985 32.639 144 75 4 19 152 75 206 6.00e-12 62.0
MS.gene006341.t1 MTR_7g081795 52.632 57 26 1 19 74 60 116 8.77e-12 61.6
MS.gene006341.t1 MTR_8g006815 52.632 57 26 1 19 74 96 152 1.01e-11 61.2
MS.gene006341.t1 MTR_4g054740 47.692 65 33 1 11 74 89 153 1.07e-11 61.6
MS.gene006341.t1 MTR_7g096700 56.140 57 24 1 19 74 20 76 1.20e-11 59.7
MS.gene006341.t1 MTR_4g054860 47.692 65 33 1 11 74 123 187 1.70e-11 61.6
MS.gene006341.t1 MTR_8g006825 52.632 57 26 1 19 74 96 152 1.75e-11 60.8
MS.gene006341.t1 MTR_1g070020 45.588 68 36 1 9 75 60 127 1.84e-11 60.8
MS.gene006341.t1 MTR_4g100380 56.140 57 24 1 19 74 145 201 1.85e-11 61.2
MS.gene006341.t1 MTR_7g070220 53.968 63 22 1 19 74 78 140 1.89e-11 62.0
MS.gene006341.t1 MTR_4g082345 51.786 56 27 0 19 74 48 103 2.02e-11 61.6
MS.gene006341.t1 MTR_1g070035 50.000 58 28 1 19 75 77 134 2.38e-11 60.5
MS.gene006341.t1 MTR_5g032820 55.357 56 25 0 19 74 46 101 2.60e-11 61.6
MS.gene006341.t1 MTR_3g095190 55.714 70 30 1 19 87 170 239 3.49e-11 61.2
MS.gene006341.t1 MTR_1g070015 50.000 58 28 1 19 75 84 141 4.94e-11 59.7
MS.gene006341.t1 MTR_4g119270 44.444 72 37 1 3 74 40 108 4.97e-11 60.5
MS.gene006341.t1 MTR_1g012470 40.659 91 49 1 19 109 7 92 5.59e-11 59.3
MS.gene006341.t1 MTR_1g070000 50.000 56 27 1 21 75 86 141 7.62e-11 59.3
MS.gene006341.t1 MTR_1g070045 50.000 58 28 1 19 75 66 123 8.77e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006341.t1 AT5G51990 55.959 193 62 5 2 178 37 222 2.94e-63 194
MS.gene006341.t1 AT4G25470 57.219 187 66 5 2 178 34 216 4.54e-62 191
MS.gene006341.t1 AT4G25480 57.527 186 67 3 2 178 34 216 1.51e-61 190
MS.gene006341.t1 AT4G25490 57.754 187 65 5 2 178 31 213 6.61e-57 178
MS.gene006341.t1 AT1G63030 52.459 183 67 4 2 178 13 181 4.23e-56 175
MS.gene006341.t1 AT1G63030 52.459 183 67 4 2 178 13 181 4.23e-56 175
MS.gene006341.t1 AT1G12610 74.038 104 27 0 2 105 13 116 2.41e-53 169
MS.gene006341.t1 AT5G25810 67.442 86 28 0 15 100 32 117 1.33e-36 126
MS.gene006341.t1 AT5G11590 64.368 87 31 0 15 101 47 133 1.32e-34 122
MS.gene006341.t1 AT4G16750 66.250 80 27 0 14 93 35 114 4.93e-33 116
MS.gene006341.t1 AT4G32800 54.000 100 46 0 1 100 1 100 1.64e-32 116
MS.gene006341.t1 AT2G35700 66.250 80 27 0 14 93 40 119 1.77e-32 115
MS.gene006341.t1 AT2G44940 61.290 93 36 0 8 100 89 181 3.91e-32 117
MS.gene006341.t1 AT1G01250 66.250 80 27 0 14 93 40 119 3.11e-31 112
MS.gene006341.t1 AT3G16280 54.615 130 56 2 15 142 57 185 1.81e-30 111
MS.gene006341.t1 AT3G16280 54.615 130 56 2 15 142 75 203 2.09e-30 111
MS.gene006341.t1 AT2G25820 64.474 76 27 0 18 93 25 100 1.59e-27 103
MS.gene006341.t1 AT2G36450 60.494 81 31 1 7 86 3 83 3.16e-27 101
MS.gene006341.t1 AT1G71450 51.282 117 55 1 19 135 24 138 3.55e-27 101
MS.gene006341.t1 AT3G60490 58.537 82 33 1 13 93 64 145 3.72e-27 103
MS.gene006341.t1 AT1G77200 60.674 89 34 1 5 93 30 117 3.57e-23 92.8
MS.gene006341.t1 AT5G52020 40.116 172 94 3 15 178 61 231 4.31e-23 92.0
MS.gene006341.t1 AT1G33760 38.095 168 90 3 1 167 1 155 1.71e-21 86.7
MS.gene006341.t1 AT1G74930 41.176 119 63 1 19 130 21 139 1.98e-20 84.3
MS.gene006341.t1 AT2G47520 57.143 63 27 0 15 77 46 108 3.63e-20 83.2
MS.gene006341.t1 AT1G46768 61.905 63 23 1 14 76 27 88 4.29e-20 82.0
MS.gene006341.t1 AT1G46768 61.905 63 23 1 14 76 27 88 5.82e-20 82.0
MS.gene006341.t1 AT1G46768 61.905 63 23 1 14 76 27 88 5.82e-20 82.0
MS.gene006341.t1 AT1G21910 46.237 93 43 1 19 104 50 142 6.98e-20 83.6
MS.gene006341.t1 AT4G36900 61.667 60 23 0 15 74 26 85 1.75e-19 82.0
MS.gene006341.t1 AT1G19210 36.957 138 73 3 19 156 12 135 2.05e-19 81.3
MS.gene006341.t1 AT3G50260 43.137 102 51 3 19 116 21 119 2.59e-19 80.5
MS.gene006341.t1 AT2G23340 64.286 56 20 0 19 74 28 83 4.29e-19 80.5
MS.gene006341.t1 AT5G67190 60.714 56 22 0 19 74 21 76 9.93e-19 79.7
MS.gene006341.t1 AT4G06746 43.878 98 50 1 19 111 36 133 1.43e-18 78.2
MS.gene006341.t1 AT3G16770 54.054 74 34 0 3 76 63 136 2.92e-18 79.7
MS.gene006341.t1 AT1G12630 65.714 70 23 1 15 84 15 83 4.42e-18 78.2
MS.gene006341.t1 AT5G21960 40.708 113 65 1 17 127 5 117 4.84e-18 78.6
MS.gene006341.t1 AT4G13620 50.633 79 37 1 5 81 216 294 1.15e-17 79.7
MS.gene006341.t1 AT2G22200 50.667 75 35 1 18 90 70 144 1.51e-17 78.2
MS.gene006341.t1 AT4G39780 59.016 61 25 0 14 74 88 148 5.24e-17 76.6
MS.gene006341.t1 AT1G22190 53.425 73 32 1 4 76 70 140 6.31e-17 76.3
MS.gene006341.t1 AT2G33710 48.780 82 37 1 14 90 65 146 7.32e-17 75.5
MS.gene006341.t1 AT2G33710 48.780 82 37 1 14 90 65 146 1.14e-16 75.1
MS.gene006341.t1 AT1G36060 48.810 84 32 1 18 90 142 225 1.31e-16 76.3
MS.gene006341.t1 AT2G20880 36.220 127 68 2 1 127 171 284 1.33e-16 76.3
MS.gene006341.t1 AT4G28140 57.627 59 25 0 18 76 142 200 1.66e-16 75.5
MS.gene006341.t1 AT3G11020 56.061 66 29 0 13 78 72 137 2.97e-16 75.5
MS.gene006341.t1 AT5G07580 52.632 76 33 2 13 87 106 179 3.41e-16 73.6
MS.gene006341.t1 AT5G65130 52.000 75 34 1 4 76 94 168 7.16e-16 73.6
MS.gene006341.t1 AT5G65130 52.000 75 34 1 4 76 96 170 8.10e-16 73.6
MS.gene006341.t1 AT5G05410 60.714 56 22 0 19 74 79 134 1.46e-15 73.2
MS.gene006341.t1 AT1G28370 60.714 56 22 0 19 74 20 75 1.55e-15 70.9
MS.gene006341.t1 AT5G05410 60.714 56 22 0 19 74 79 134 1.81e-15 73.2
MS.gene006341.t1 AT1G78080 59.322 59 24 0 18 76 151 209 2.06e-15 73.2
MS.gene006341.t1 AT1G28370 60.714 56 22 0 19 74 58 113 2.11e-15 71.2
MS.gene006341.t1 AT1G22810 35.556 135 69 3 19 145 14 138 2.17e-15 69.7
MS.gene006341.t1 AT3G57600 58.929 56 23 0 19 74 28 83 2.57e-15 72.0
MS.gene006341.t1 AT5G25390 57.143 56 24 0 19 74 7 62 3.42e-15 70.5
MS.gene006341.t1 AT5G61890 56.667 60 24 1 15 74 88 145 3.48e-15 71.2
MS.gene006341.t1 AT4G31060 52.308 65 30 1 19 82 27 91 3.70e-15 70.1
MS.gene006341.t1 AT4G27950 57.895 57 24 0 19 75 118 174 4.03e-15 72.0
MS.gene006341.t1 AT5G13330 54.839 62 26 1 15 76 37 96 4.17e-15 70.5
MS.gene006341.t1 AT1G15360 58.929 56 23 0 19 74 7 62 4.30e-15 70.5
MS.gene006341.t1 AT1G15360 58.929 56 23 0 19 74 7 62 4.30e-15 70.5
MS.gene006341.t1 AT1G28360 51.351 74 29 1 19 92 12 78 5.41e-15 69.7
MS.gene006341.t1 AT4G11140 57.143 56 24 0 19 74 87 142 6.17e-15 71.2
MS.gene006341.t1 AT5G43410 55.000 60 26 1 16 74 12 71 6.79e-15 68.2
MS.gene006341.t1 AT3G15210 60.714 56 22 0 19 74 25 80 7.20e-15 70.1
MS.gene006341.t1 AT1G03800 52.941 68 29 1 7 74 44 108 7.51e-15 70.5
MS.gene006341.t1 AT1G71520 40.625 96 48 3 13 102 8 100 8.02e-15 68.2
MS.gene006341.t1 AT5G61600 60.656 61 21 2 15 74 86 144 8.40e-15 70.1
MS.gene006341.t1 AT5G44210 58.929 56 23 0 19 74 33 88 1.19e-14 69.3
MS.gene006341.t1 AT5G51190 57.143 63 24 2 13 74 68 128 1.19e-14 69.7
MS.gene006341.t1 AT1G75490 50.000 72 36 0 18 89 41 112 1.68e-14 68.9
MS.gene006341.t1 AT5G19790 48.684 76 35 2 2 76 7 79 1.74e-14 69.7
MS.gene006341.t1 AT3G61630 48.101 79 35 1 19 97 105 177 1.89e-14 70.1
MS.gene006341.t1 AT1G72360 53.571 56 26 0 19 74 25 80 2.35e-14 68.6
MS.gene006341.t1 AT1G77640 45.455 99 44 2 19 107 43 141 4.20e-14 68.6
MS.gene006341.t1 AT5G47230 57.143 63 24 2 13 74 152 212 4.38e-14 68.9
MS.gene006341.t1 AT3G23230 51.613 62 29 1 19 79 20 81 5.21e-14 66.2
MS.gene006341.t1 AT5G18450 49.351 77 36 1 1 74 13 89 6.21e-14 68.6
MS.gene006341.t1 AT5G53290 56.140 57 25 0 19 75 125 181 6.47e-14 68.9
MS.gene006341.t1 AT1G72360 53.571 56 26 0 19 74 76 131 6.76e-14 68.2
MS.gene006341.t1 AT1G72360 53.571 56 26 0 19 74 74 129 6.83e-14 68.2
MS.gene006341.t1 AT4G23750 54.386 57 26 0 19 75 122 178 9.51e-14 68.6
MS.gene006341.t1 AT4G23750 54.386 57 26 0 19 75 122 178 9.51e-14 68.6
MS.gene006341.t1 AT2G44840 57.895 57 23 1 19 74 92 148 2.39e-13 66.2
MS.gene006341.t1 AT2G40340 57.143 56 24 0 19 74 14 69 2.53e-13 66.6
MS.gene006341.t1 AT2G40340 57.143 56 24 0 19 74 14 69 2.53e-13 66.6
MS.gene006341.t1 AT2G40340 57.143 56 24 0 19 74 14 69 2.53e-13 66.6
MS.gene006341.t1 AT5G61590 52.381 84 37 2 5 87 95 176 3.03e-13 65.5
MS.gene006341.t1 AT2G40340 57.143 56 24 0 19 74 72 127 4.97e-13 66.2
MS.gene006341.t1 AT5G25190 58.929 56 23 0 19 74 8 63 5.04e-13 64.3
MS.gene006341.t1 AT2G40340 57.143 56 24 0 19 74 72 127 5.75e-13 66.2
MS.gene006341.t1 AT2G46310 53.571 56 26 0 19 74 99 154 6.26e-13 65.9
MS.gene006341.t1 AT2G40340 57.143 56 24 0 19 74 79 134 6.26e-13 66.2
MS.gene006341.t1 AT3G20310 53.226 62 29 0 13 74 21 82 8.11e-13 65.1
MS.gene006341.t1 AT5G47220 56.140 57 24 1 19 74 117 173 1.01e-12 64.7
MS.gene006341.t1 AT4G17490 55.556 63 25 2 13 74 133 193 1.07e-12 65.1
MS.gene006341.t1 AT5G25390 53.571 56 23 1 19 74 7 59 1.18e-12 63.5
MS.gene006341.t1 AT5G64750 45.205 73 39 1 26 98 192 263 1.20e-12 65.5
MS.gene006341.t1 AT3G23240 51.724 58 27 1 19 75 82 139 1.49e-12 63.9
MS.gene006341.t1 AT1G50640 57.143 56 24 0 19 74 28 83 3.75e-12 62.8
MS.gene006341.t1 AT1G43160 42.857 91 43 1 19 109 61 142 5.25e-12 62.0
MS.gene006341.t1 AT2G40350 51.786 56 27 0 19 74 74 129 7.85e-12 60.8
MS.gene006341.t1 AT2G40350 51.786 56 27 0 19 74 67 122 9.33e-12 60.5
MS.gene006341.t1 AT4G17500 56.140 57 24 1 19 74 148 204 1.15e-11 62.0
MS.gene006341.t1 AT5G07310 54.688 64 27 1 15 78 90 151 2.94e-11 60.8
MS.gene006341.t1 AT2G40220 53.846 78 25 2 3 75 40 111 3.13e-11 61.2
MS.gene006341.t1 AT1G12980 55.357 56 25 0 19 74 57 112 3.91e-11 60.8
MS.gene006341.t1 AT1G12890 45.833 72 36 1 3 74 8 76 4.75e-11 59.7
MS.gene006341.t1 AT1G24590 54.386 57 26 0 19 75 58 114 6.75e-11 60.1

Find 69 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAAGCAGCGGAGGCTTTC+AGG 0.195098 1.1:+73143111 MS.gene006341:CDS
AAATGTTCCTAGCCAAATTC+TGG 0.270820 1.1:-73142943 None:intergenic
TAATGTCACCGGCGCATTAC+TGG 0.292563 1.1:+73143270 MS.gene006341:CDS
CTAACAAGAAAACCAGAATT+TGG 0.316764 1.1:+73142931 MS.gene006341:CDS
TACTTCACAAACCCACTTCC+CGG 0.346344 1.1:-73142901 None:intergenic
GGTGTAAGAAAGAGGGATTC+CGG 0.391507 1.1:+73142882 MS.gene006341:CDS
TTCCTCCCTGCACGCTTCTT+CGG 0.394846 1.1:-73142825 None:intergenic
CCCTGCACGCTTCTTCGGCA+TGG 0.395018 1.1:-73142820 None:intergenic
TGATTCTGCATGGAGGTTGC+CGG 0.397988 1.1:+73143046 MS.gene006341:CDS
TGAGAATAGTGAGGAGAGGA+AGG 0.400657 1.1:+73143148 MS.gene006341:CDS
TGCATGGAGGTTGCCGGTCC+CGG 0.406873 1.1:+73143052 MS.gene006341:CDS
TCCCTTGCATCCGCCGTAGC+CGG 0.418270 1.1:-73143071 None:intergenic
CCCTTGCATCCGCCGTAGCC+GGG 0.437662 1.1:-73143070 None:intergenic
AATGTCACCGGCGCATTACT+GGG 0.441360 1.1:+73143271 MS.gene006341:CDS
TCCCGGCTACGGCGGATGCA+AGG 0.444353 1.1:+73143069 MS.gene006341:CDS
CGGCGATTGCGTTGAGGGGA+AGG 0.448014 1.1:+73143003 MS.gene006341:CDS
TGTTGCGGCGATTGCGTTGA+GGG 0.456555 1.1:+73142998 MS.gene006341:CDS
TGTGCACGCGCCGCCATCTC+CGG 0.457729 1.1:-73142972 None:intergenic
GAGGTTGCCGGTCCCGGCTA+CGG 0.458126 1.1:+73143058 MS.gene006341:CDS
GAAAGAGGGATTCCGGGAAG+TGG 0.469069 1.1:+73142889 MS.gene006341:CDS
GTGTAAGAAAGAGGGATTCC+GGG 0.472104 1.1:+73142883 MS.gene006341:CDS
ACCATGCCGAAGAAGCGTGC+AGG 0.492135 1.1:+73142819 None:intergenic
ATCTTCATCAACGGTGGCGG+TGG 0.493317 1.1:+73143178 MS.gene006341:CDS
GCATCCGCCGTAGCCGGGAC+CGG 0.500997 1.1:-73143065 None:intergenic
TTAACTTTGCTGATTCTGCA+TGG 0.509932 1.1:+73143036 MS.gene006341:CDS
GGCAGCGGCTGAAGCAGCGG+AGG 0.523238 1.1:+73143103 MS.gene006341:CDS
AACGGTGGCGGTGGCAGAGA+CGG 0.527041 1.1:+73143187 MS.gene006341:CDS
AGCAGCGGAGGCTTTCAGGC+CGG 0.528349 1.1:+73143115 MS.gene006341:CDS
CTATTCTCAAACACACTCTC+CGG 0.531530 1.1:-73143134 None:intergenic
GGCGCGTGCACACGATGTTG+CGG 0.533716 1.1:+73142983 MS.gene006341:CDS
GGATGCAAGGGATATTCAAA+AGG 0.537449 1.1:+73143082 MS.gene006341:CDS
CCCGGCTACGGCGGATGCAA+GGG 0.539749 1.1:+73143070 MS.gene006341:CDS
AAAGGCAGCGGCTGAAGCAG+CGG 0.546461 1.1:+73143100 MS.gene006341:CDS
TTTCTTACACCACGGTACAC+AGG 0.547271 1.1:-73142870 None:intergenic
AACATTTCCTACACCGGAGA+TGG 0.553530 1.1:+73142959 MS.gene006341:CDS
GGAAGAAGAGGATACAGTGC+CGG 0.556549 1.1:+73143226 MS.gene006341:CDS
CATTACTGGGGAAGTGATTG+TGG 0.556769 1.1:+73143284 MS.gene006341:CDS
TTCTTACACCACGGTACACA+GGG 0.559006 1.1:-73142869 None:intergenic
TGTTTGAGAATAGTGAGGAG+AGG 0.563589 1.1:+73143144 MS.gene006341:CDS
GGCGGTGGCAGAGACGGTGA+TGG 0.567449 1.1:+73143193 MS.gene006341:CDS
TGTACCGTGGTGTAAGAAAG+AGG 0.571377 1.1:+73142874 MS.gene006341:CDS
CCATGCCGAAGAAGCGTGCA+GGG 0.575137 1.1:+73142820 None:intergenic
CGCGCCGCCATCTCCGGTGT+AGG 0.575941 1.1:-73142966 None:intergenic
ATGTTGCGGCGATTGCGTTG+AGG 0.577679 1.1:+73142997 MS.gene006341:CDS
TGAATCTTCATCAACGGTGG+CGG 0.578115 1.1:+73143175 MS.gene006341:CDS
GCTAGGAACATTTCCTACAC+CGG 0.580013 1.1:+73142953 MS.gene006341:CDS
TGATTGTGGTGTTGCTGACG+TGG 0.581354 1.1:+73143298 MS.gene006341:CDS
AAAGAGGGATTCCGGGAAGT+GGG 0.584020 1.1:+73142890 MS.gene006341:CDS
GGAGCAACGAGAGGAAGAAG+AGG 0.590815 1.1:+73143214 MS.gene006341:CDS
GAGTGTGTTTGAGAATAGTG+AGG 0.597791 1.1:+73143139 MS.gene006341:CDS
GACGGTGATGGAGCAACGAG+AGG 0.599901 1.1:+73143205 MS.gene006341:CDS
GTTGCGGCGATTGCGTTGAG+GGG 0.602263 1.1:+73142999 MS.gene006341:CDS
AAACATGGTGCTAATGTCAC+CGG 0.605887 1.1:+73143259 MS.gene006341:CDS
TCACTTCCCCAGTAATGCGC+CGG 0.608520 1.1:-73143278 None:intergenic
GTTGCCGGTCCCGGCTACGG+CGG 0.611596 1.1:+73143061 MS.gene006341:CDS
AAGAAAACCAGAATTTGGCT+AGG 0.617595 1.1:+73142936 MS.gene006341:CDS
ATTTCCTACACCGGAGATGG+CGG 0.619014 1.1:+73142962 MS.gene006341:CDS
ACCATGTTTCTCAAATACTC+CGG 0.621228 1.1:-73143245 None:intergenic
AAGGGATATTCAAAAGGCAG+CGG 0.629815 1.1:+73143088 MS.gene006341:CDS
GCCGGAGTATTTGAGAAACA+TGG 0.640169 1.1:+73143244 MS.gene006341:CDS
ATGAAACTGAAATTTCATTG+TGG 0.640236 1.1:+73143327 MS.gene006341:CDS
ATGTCACCGGCGCATTACTG+GGG 0.644709 1.1:+73143272 MS.gene006341:CDS
GTACCGTGGTGTAAGAAAGA+GGG 0.653532 1.1:+73142875 MS.gene006341:CDS
GGATAGTGAATCTTCATCAA+CGG 0.654948 1.1:+73143169 MS.gene006341:CDS
ACTTTGCTGATTCTGCATGG+AGG 0.660377 1.1:+73143039 MS.gene006341:CDS
AATCCCTCTTTCTTACACCA+CGG 0.672149 1.1:-73142878 None:intergenic
TAGTGAATCTTCATCAACGG+TGG 0.690170 1.1:+73143172 MS.gene006341:CDS
ACACGTCACCCTGTGTACCG+TGG 0.702884 1.1:+73142861 MS.gene006341:CDS
TGCCGAAGAAGCGTGCAGGG+AGG 0.724564 1.1:+73142823 MS.gene006341:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATGAAACTGAAATTTCATTG+TGG + chr1.1:73143327-73143346 MS.gene006341:CDS 25.0%
CTAACAAGAAAACCAGAATT+TGG + chr1.1:73142931-73142950 MS.gene006341:CDS 30.0%
!!! CAAATTCTGGTTTTCTTGTT+AGG - chr1.1:73142933-73142952 None:intergenic 30.0%
AAATGTTCCTAGCCAAATTC+TGG - chr1.1:73142946-73142965 None:intergenic 35.0%
AAGAAAACCAGAATTTGGCT+AGG + chr1.1:73142936-73142955 MS.gene006341:CDS 35.0%
ACCATGTTTCTCAAATACTC+CGG - chr1.1:73143248-73143267 None:intergenic 35.0%
GGATAGTGAATCTTCATCAA+CGG + chr1.1:73143169-73143188 MS.gene006341:CDS 35.0%
!! TTAACTTTGCTGATTCTGCA+TGG + chr1.1:73143036-73143055 MS.gene006341:CDS 35.0%
AAGGGATATTCAAAAGGCAG+CGG + chr1.1:73143088-73143107 MS.gene006341:CDS 40.0%
AATCCCTCTTTCTTACACCA+CGG - chr1.1:73142881-73142900 None:intergenic 40.0%
CTATTCTCAAACACACTCTC+CGG - chr1.1:73143137-73143156 None:intergenic 40.0%
GAGTGTGTTTGAGAATAGTG+AGG + chr1.1:73143139-73143158 MS.gene006341:CDS 40.0%
GGATGCAAGGGATATTCAAA+AGG + chr1.1:73143082-73143101 MS.gene006341:CDS 40.0%
TAGTGAATCTTCATCAACGG+TGG + chr1.1:73143172-73143191 MS.gene006341:CDS 40.0%
TGTTTGAGAATAGTGAGGAG+AGG + chr1.1:73143144-73143163 MS.gene006341:CDS 40.0%
! AAACATGGTGCTAATGTCAC+CGG + chr1.1:73143259-73143278 MS.gene006341:CDS 40.0%
AACATTTCCTACACCGGAGA+TGG + chr1.1:73142959-73142978 MS.gene006341:CDS 45.0%
CATTACTGGGGAAGTGATTG+TGG + chr1.1:73143284-73143303 MS.gene006341:CDS 45.0%
GCTAGGAACATTTCCTACAC+CGG + chr1.1:73142953-73142972 MS.gene006341:CDS 45.0%
GGTGTAAGAAAGAGGGATTC+CGG + chr1.1:73142882-73142901 MS.gene006341:CDS 45.0%
GTACCGTGGTGTAAGAAAGA+GGG + chr1.1:73142875-73142894 MS.gene006341:CDS 45.0%
GTGTAAGAAAGAGGGATTCC+GGG + chr1.1:73142883-73142902 MS.gene006341:CDS 45.0%
TACTTCACAAACCCACTTCC+CGG - chr1.1:73142904-73142923 None:intergenic 45.0%
TGAATCTTCATCAACGGTGG+CGG + chr1.1:73143175-73143194 MS.gene006341:CDS 45.0%
TGAGAATAGTGAGGAGAGGA+AGG + chr1.1:73143148-73143167 MS.gene006341:CDS 45.0%
TGTACCGTGGTGTAAGAAAG+AGG + chr1.1:73142874-73142893 MS.gene006341:CDS 45.0%
TTCTTACACCACGGTACACA+GGG - chr1.1:73142872-73142891 None:intergenic 45.0%
TTTCTTACACCACGGTACAC+AGG - chr1.1:73142873-73142892 None:intergenic 45.0%
! GCCGGAGTATTTGAGAAACA+TGG + chr1.1:73143244-73143263 MS.gene006341:CDS 45.0%
!! ACTTTGCTGATTCTGCATGG+AGG + chr1.1:73143039-73143058 MS.gene006341:CDS 45.0%
AAAGAGGGATTCCGGGAAGT+GGG + chr1.1:73142890-73142909 MS.gene006341:CDS 50.0%
AATGTCACCGGCGCATTACT+GGG + chr1.1:73143271-73143290 MS.gene006341:CDS 50.0%
ATTTCCTACACCGGAGATGG+CGG + chr1.1:73142962-73142981 MS.gene006341:CDS 50.0%
GGAAGAAGAGGATACAGTGC+CGG + chr1.1:73143226-73143245 MS.gene006341:CDS 50.0%
TAATGTCACCGGCGCATTAC+TGG + chr1.1:73143270-73143289 MS.gene006341:CDS 50.0%
TGATTCTGCATGGAGGTTGC+CGG + chr1.1:73143046-73143065 MS.gene006341:CDS 50.0%
!! TGATTGTGGTGTTGCTGACG+TGG + chr1.1:73143298-73143317 MS.gene006341:CDS 50.0%
ATGTCACCGGCGCATTACTG+GGG + chr1.1:73143272-73143291 MS.gene006341:CDS 55.0%
ATGTTGCGGCGATTGCGTTG+AGG + chr1.1:73142997-73143016 MS.gene006341:CDS 55.0%
GAAAGAGGGATTCCGGGAAG+TGG + chr1.1:73142889-73142908 MS.gene006341:CDS 55.0%
GGAGCAACGAGAGGAAGAAG+AGG + chr1.1:73143214-73143233 MS.gene006341:CDS 55.0%
TCACTTCCCCAGTAATGCGC+CGG - chr1.1:73143281-73143300 None:intergenic 55.0%
TGTTGCGGCGATTGCGTTGA+GGG + chr1.1:73142998-73143017 MS.gene006341:CDS 55.0%
TTCCTCCCTGCACGCTTCTT+CGG - chr1.1:73142828-73142847 None:intergenic 55.0%
! ATCTTCATCAACGGTGGCGG+TGG + chr1.1:73143178-73143197 MS.gene006341:CDS 55.0%
AAAGGCAGCGGCTGAAGCAG+CGG + chr1.1:73143100-73143119 MS.gene006341:CDS 60.0%
ACACGTCACCCTGTGTACCG+TGG + chr1.1:73142861-73142880 MS.gene006341:CDS 60.0%
CTGAAGCAGCGGAGGCTTTC+AGG + chr1.1:73143111-73143130 MS.gene006341:CDS 60.0%
GTTGCGGCGATTGCGTTGAG+GGG + chr1.1:73142999-73143018 MS.gene006341:CDS 60.0%
!! GACGGTGATGGAGCAACGAG+AGG + chr1.1:73143205-73143224 MS.gene006341:CDS 60.0%
AGCAGCGGAGGCTTTCAGGC+CGG + chr1.1:73143115-73143134 MS.gene006341:CDS 65.0%
CGGCGATTGCGTTGAGGGGA+AGG + chr1.1:73143003-73143022 MS.gene006341:CDS 65.0%
GGCGCGTGCACACGATGTTG+CGG + chr1.1:73142983-73143002 MS.gene006341:CDS 65.0%
TCCCTTGCATCCGCCGTAGC+CGG - chr1.1:73143074-73143093 None:intergenic 65.0%
TGCATGGAGGTTGCCGGTCC+CGG + chr1.1:73143052-73143071 MS.gene006341:CDS 65.0%
! AACGGTGGCGGTGGCAGAGA+CGG + chr1.1:73143187-73143206 MS.gene006341:CDS 65.0%
! TGCCGAAGAAGCGTGCAGGG+AGG + chr1.1:73142823-73142842 MS.gene006341:CDS 65.0%
CCCGGCTACGGCGGATGCAA+GGG + chr1.1:73143070-73143089 MS.gene006341:CDS 70.0%
CCCTTGCATCCGCCGTAGCC+GGG - chr1.1:73143073-73143092 None:intergenic 70.0%
GAGGTTGCCGGTCCCGGCTA+CGG + chr1.1:73143058-73143077 MS.gene006341:CDS 70.0%
GGCGGTGGCAGAGACGGTGA+TGG + chr1.1:73143193-73143212 MS.gene006341:CDS 70.0%
TCCCGGCTACGGCGGATGCA+AGG + chr1.1:73143069-73143088 MS.gene006341:CDS 70.0%
TGTGCACGCGCCGCCATCTC+CGG - chr1.1:73142975-73142994 None:intergenic 70.0%
CGCGCCGCCATCTCCGGTGT+AGG - chr1.1:73142969-73142988 None:intergenic 75.0%
GCATCCGCCGTAGCCGGGAC+CGG - chr1.1:73143068-73143087 None:intergenic 75.0%
GGCAGCGGCTGAAGCAGCGG+AGG + chr1.1:73143103-73143122 MS.gene006341:CDS 75.0%
GTTGCCGGTCCCGGCTACGG+CGG + chr1.1:73143061-73143080 MS.gene006341:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 73142822 73143364 73142822 ID=MS.gene006341
chr1.1 mRNA 73142822 73143364 73142822 ID=MS.gene006341.t1;Parent=MS.gene006341
chr1.1 exon 73142822 73143364 73142822 ID=MS.gene006341.t1.exon1;Parent=MS.gene006341.t1
chr1.1 CDS 73142822 73143364 73142822 ID=cds.MS.gene006341.t1;Parent=MS.gene006341.t1
Gene Sequence

>MS.gene006341

ATGCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAGAGAAACACGTCACCCTGTGTACCGTGGTGTAAGAAAGAGGGATTCCGGGAAGTGGGTTTGTGAAGTAAGAGAACCTAACAAGAAAACCAGAATTTGGCTAGGAACATTTCCTACACCGGAGATGGCGGCGCGTGCACACGATGTTGCGGCGATTGCGTTGAGGGGAAGGTCTGCTTGTCTTAACTTTGCTGATTCTGCATGGAGGTTGCCGGTCCCGGCTACGGCGGATGCAAGGGATATTCAAAAGGCAGCGGCTGAAGCAGCGGAGGCTTTCAGGCCGGAGAGTGTGTTTGAGAATAGTGAGGAGAGGAAGGATAGTGAATCTTCATCAACGGTGGCGGTGGCAGAGACGGTGATGGAGCAACGAGAGGAAGAAGAGGATACAGTGCCGGAGTATTTGAGAAACATGGTGCTAATGTCACCGGCGCATTACTGGGGAAGTGATTGTGGTGTTGCTGACGTGGAATTTGATGAAACTGAAATTTCATTGTGGAGTTATTCATTTTAG

Protein sequence

>MS.gene006341.t1

MPKKRAGRKKFRETRHPVYRGVRKRDSGKWVCEVREPNKKTRIWLGTFPTPEMAARAHDVAAIALRGRSACLNFADSAWRLPVPATADARDIQKAAAEAAEAFRPESVFENSEERKDSESSSTVAVAETVMEQREEEEDTVPEYLRNMVLMSPAHYWGSDCGVADVEFDETEISLWSYSF