AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30844


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30844.t1 MTR_6g465530 92.147 191 15 0 4 194 8 198 9.32e-114 322
MS.gene30844.t1 MTR_6g465510 87.562 201 15 2 4 194 8 208 2.10e-104 299
MS.gene30844.t1 MTR_6g465420 76.471 187 37 3 4 188 29 210 7.51e-101 292
MS.gene30844.t1 MTR_6g465460 77.660 188 32 4 4 188 29 209 1.24e-99 289
MS.gene30844.t1 MTR_6g465450 79.255 188 31 3 4 188 29 211 4.05e-97 282
MS.gene30844.t1 MTR_6g466000 71.000 200 45 4 4 194 32 227 1.41e-95 277
MS.gene30844.t1 MTR_6g465430 76.064 188 36 4 4 188 29 210 5.96e-93 271
MS.gene30844.t1 MTR_6g465690 71.649 194 41 3 4 189 38 225 9.08e-90 264
MS.gene30844.t1 MTR_6g466130 72.917 192 47 2 4 194 41 228 1.28e-88 259
MS.gene30844.t1 MTR_6g465850 52.263 243 65 4 3 194 37 279 1.34e-69 213
MS.gene30844.t1 MTR_1g101600 61.053 190 64 2 7 194 19 200 2.38e-69 210
MS.gene30844.t1 MTR_6g465990 59.500 200 48 5 4 194 18 193 5.70e-67 203
MS.gene30844.t1 MTR_6g466020 57.754 187 52 3 6 191 20 180 1.08e-61 189
MS.gene30844.t1 MTR_5g010930 46.635 208 81 5 7 194 27 224 3.93e-53 169
MS.gene30844.t1 MTR_5g010940 48.500 200 87 5 7 194 32 227 4.62e-50 162
MS.gene30844.t1 MTR_4g102660 52.000 200 81 6 7 194 22 218 7.04e-50 161
MS.gene30844.t1 MTR_5g010910 48.718 195 84 5 12 194 32 222 2.73e-49 159
MS.gene30844.t1 MTR_8g006410 68.750 80 25 0 24 103 47 126 1.91e-34 121
MS.gene30844.t1 MTR_3g110205 55.238 105 46 1 24 128 38 141 4.78e-34 119
MS.gene30844.t1 MTR_2g085015 39.362 188 93 6 23 192 41 225 1.60e-32 117
MS.gene30844.t1 MTR_7g046260 58.511 94 32 1 17 103 42 135 2.05e-31 114
MS.gene30844.t1 MTR_7g117690 59.091 88 36 0 16 103 15 102 1.17e-30 110
MS.gene30844.t1 MTR_5g012910 62.025 79 30 0 25 103 24 102 2.77e-30 109
MS.gene30844.t1 MTR_2g101340 50.926 108 47 2 2 103 8 115 2.86e-29 107
MS.gene30844.t1 MTR_8g013860 62.025 79 30 0 25 103 43 121 3.12e-29 107
MS.gene30844.t1 MTR_8g102800 56.566 99 43 0 19 117 27 125 3.71e-29 108
MS.gene30844.t1 MTR_6g088405 62.821 78 29 0 26 103 41 118 1.06e-28 107
MS.gene30844.t1 MTR_8g027465 56.383 94 38 1 13 103 23 116 2.27e-28 104
MS.gene30844.t1 MTR_4g100650 62.821 78 29 0 26 103 71 148 3.28e-27 103
MS.gene30844.t1 MTR_4g102670 58.228 79 32 1 25 103 11 88 1.13e-25 97.8
MS.gene30844.t1 MTR_4g035430 55.422 83 37 0 28 110 31 113 2.63e-24 95.5
MS.gene30844.t1 MTR_6g088425 61.628 86 33 0 25 110 45 130 1.11e-23 94.4
MS.gene30844.t1 MTR_1g006660 58.696 92 34 1 16 103 30 121 3.16e-23 93.6
MS.gene30844.t1 MTR_5g008550 45.545 101 53 1 29 127 21 121 1.00e-19 82.8
MS.gene30844.t1 MTR_5g008590 54.945 91 41 0 29 119 11 101 5.96e-19 80.5
MS.gene30844.t1 MTR_5g008470 39.806 103 62 0 31 133 77 179 8.54e-18 77.4
MS.gene30844.t1 MTR_2g435590 52.000 75 33 1 13 87 83 154 1.01e-17 79.0
MS.gene30844.t1 MTR_1g014780 56.667 60 26 0 28 87 37 96 1.69e-17 77.8
MS.gene30844.t1 MTR_8g090350 46.237 93 45 2 13 100 95 187 1.75e-17 78.6
MS.gene30844.t1 MTR_1g060910 35.260 173 71 7 13 169 3 150 2.17e-17 76.3
MS.gene30844.t1 MTR_1g101550 42.958 142 74 4 29 165 57 196 2.39e-17 77.4
MS.gene30844.t1 MTR_3g102100 40.164 122 65 4 14 133 31 146 2.77e-17 75.9
MS.gene30844.t1 MTR_5g083340 62.069 58 22 0 29 86 85 142 2.80e-17 79.0
MS.gene30844.t1 MTR_7g020980 45.679 81 44 0 25 105 47 127 3.56e-17 75.5
MS.gene30844.t1 MTR_7g021010 45.977 87 46 1 22 107 4 90 1.29e-16 73.2
MS.gene30844.t1 MTR_2g105380 51.471 68 33 0 17 84 105 172 1.46e-16 77.0
MS.gene30844.t1 MTR_1g019110 37.374 99 59 1 29 127 44 139 1.56e-16 73.9
MS.gene30844.t1 MTR_1g014820 43.478 92 48 1 28 115 26 117 2.14e-16 75.5
MS.gene30844.t1 MTR_3g074130 59.322 59 24 0 28 86 149 207 2.48e-16 75.9
MS.gene30844.t1 MTR_2g043030 42.857 91 52 0 28 118 18 108 2.56e-16 73.9
MS.gene30844.t1 MTR_7g021010 44.578 83 46 0 25 107 47 129 2.81e-16 73.2
MS.gene30844.t1 MTR_1g090170 55.556 63 28 0 24 86 147 209 2.92e-16 75.5
MS.gene30844.t1 MTR_1g087920 47.561 82 41 1 7 86 53 134 3.58e-16 75.1
MS.gene30844.t1 MTR_1g014860 50.000 66 33 0 22 87 15 80 3.81e-16 73.9
MS.gene30844.t1 MTR_5g062700 59.322 59 24 0 28 86 172 230 3.82e-16 75.9
MS.gene30844.t1 MTR_2g043050 44.706 85 47 0 28 112 18 102 4.73e-16 73.6
MS.gene30844.t1 MTR_5g083330 52.055 73 35 0 14 86 20 92 5.38e-16 74.7
MS.gene30844.t1 MTR_1g090170 55.556 63 28 0 24 86 234 296 5.59e-16 75.5
MS.gene30844.t1 MTR_3g105510 43.529 85 48 0 29 113 37 121 5.63e-16 73.9
MS.gene30844.t1 MTR_8g092460 56.667 60 26 0 29 88 145 204 8.38e-16 74.3
MS.gene30844.t1 MTR_5g016750 38.835 103 56 1 29 131 25 120 8.56e-16 72.0
MS.gene30844.t1 MTR_2g090235 59.322 59 24 0 28 86 217 275 9.11e-16 74.7
MS.gene30844.t1 MTR_4g078710 36.134 119 68 2 13 131 14 124 1.01e-15 72.8
MS.gene30844.t1 MTR_4g086220 60.714 56 22 0 29 84 96 151 1.18e-15 72.8
MS.gene30844.t1 MTR_2g089170 49.367 79 39 1 29 106 65 143 1.35e-15 71.6
MS.gene30844.t1 MTR_3g053690 59.375 64 23 1 21 84 22 82 1.37e-15 72.4
MS.gene30844.t1 MTR_1g014800 53.333 60 28 0 28 87 30 89 1.55e-15 72.4
MS.gene30844.t1 MTR_2g078680 60.714 56 22 0 29 84 31 86 1.81e-15 71.6
MS.gene30844.t1 MTR_1g028560 57.895 57 24 0 29 85 115 171 2.10e-15 73.6
MS.gene30844.t1 MTR_5g082950 62.500 56 21 0 29 84 66 121 2.62e-15 73.2
MS.gene30844.t1 MTR_4g086160 58.929 56 23 0 29 84 96 151 4.45e-15 71.2
MS.gene30844.t1 MTR_4g086190 58.929 56 23 0 29 84 96 151 4.50e-15 71.2
MS.gene30844.t1 MTR_8g022820 51.515 66 32 0 19 84 113 178 5.56e-15 72.4
MS.gene30844.t1 MTR_4g086165 58.929 56 23 0 29 84 82 137 5.60e-15 70.5
MS.gene30844.t1 MTR_8g022820 51.515 66 32 0 19 84 114 179 5.75e-15 72.4
MS.gene30844.t1 MTR_8g022820 51.515 66 32 0 19 84 114 179 5.75e-15 72.4
MS.gene30844.t1 MTR_1g074310 54.839 62 27 1 29 89 21 82 6.01e-15 68.9
MS.gene30844.t1 MTR_0939s0010 58.929 56 23 0 29 84 65 120 6.27e-15 70.1
MS.gene30844.t1 MTR_7g028925 50.000 66 30 1 22 87 22 84 7.36e-15 67.4
MS.gene30844.t1 MTR_2g015050 52.174 69 32 1 17 84 122 190 9.19e-15 70.9
MS.gene30844.t1 MTR_7g092190 60.714 56 22 0 29 84 30 85 1.15e-14 70.9
MS.gene30844.t1 MTR_4g054740 42.697 89 45 2 1 88 74 157 1.44e-14 70.1
MS.gene30844.t1 MTR_3g105480 43.373 83 47 0 31 113 33 115 1.47e-14 69.7
MS.gene30844.t1 MTR_2g438180 56.452 62 26 1 29 89 14 75 2.68e-14 67.0
MS.gene30844.t1 MTR_4g114570 57.143 56 24 0 29 84 7 62 3.04e-14 68.6
MS.gene30844.t1 MTR_2g014340 57.143 56 24 0 29 84 19 74 4.55e-14 67.8
MS.gene30844.t1 MTR_3g106290 60.714 56 22 0 29 84 8 63 5.36e-14 67.4
MS.gene30844.t1 MTR_4g010640 57.143 56 24 0 29 84 7 62 5.37e-14 67.8
MS.gene30844.t1 MTR_1g048610 56.140 57 24 1 29 84 89 145 6.79e-14 68.2
MS.gene30844.t1 MTR_5g009620 50.667 75 27 2 16 84 97 167 7.67e-14 68.9
MS.gene30844.t1 MTR_2g043040 42.353 85 49 0 28 112 18 102 8.91e-14 67.8
MS.gene30844.t1 MTR_2g103700 53.333 60 28 0 29 88 7 66 9.15e-14 66.6
MS.gene30844.t1 MTR_4g008860 60.714 56 22 0 29 84 8 63 1.09e-13 66.6
MS.gene30844.t1 MTR_2g043020 40.659 91 54 0 28 118 18 108 1.26e-13 66.6
MS.gene30844.t1 MTR_2g014300 58.929 56 23 0 29 84 15 70 1.59e-13 65.9
MS.gene30844.t1 MTR_1g070070 56.140 57 24 1 29 84 21 77 1.65e-13 65.1
MS.gene30844.t1 MTR_3g090760 33.871 124 82 0 29 152 113 236 1.72e-13 68.2
MS.gene30844.t1 MTR_1g074230 57.895 57 23 1 29 84 19 75 1.92e-13 64.7
MS.gene30844.t1 MTR_4g100420 54.167 72 30 2 29 99 157 226 2.33e-13 67.4
MS.gene30844.t1 MTR_4g100450 46.250 80 42 1 6 84 131 210 2.52e-13 67.4
MS.gene30844.t1 MTR_2g016730 41.758 91 47 2 18 107 11 96 4.10e-13 67.0
MS.gene30844.t1 MTR_3g072610 48.315 89 42 2 29 113 25 113 4.57e-13 65.5
MS.gene30844.t1 MTR_4g054360 45.122 82 39 2 8 88 108 184 5.71e-13 65.9
MS.gene30844.t1 MTR_5g085100 48.684 76 36 1 9 84 29 101 1.22e-12 65.1
MS.gene30844.t1 MTR_5g085070 41.509 106 59 1 22 127 47 149 1.46e-12 65.1
MS.gene30844.t1 MTR_4g088005 47.826 69 35 1 17 84 45 113 1.49e-12 62.0
MS.gene30844.t1 MTR_5g008540 47.541 61 32 0 31 91 26 86 2.24e-12 60.8
MS.gene30844.t1 MTR_8g069360 53.571 56 26 0 29 84 44 99 2.51e-12 65.1
MS.gene30844.t1 MTR_1g090290 51.613 62 27 2 24 84 110 169 2.88e-12 63.2
MS.gene30844.t1 MTR_4g111915 47.458 59 31 0 29 87 53 111 2.92e-12 61.6
MS.gene30844.t1 MTR_1g074250 50.820 61 28 1 26 84 16 76 3.29e-12 61.2
MS.gene30844.t1 MTR_5g075570 48.333 60 31 0 25 84 120 179 4.24e-12 63.5
MS.gene30844.t1 MTR_4g054860 44.706 85 41 3 5 88 112 191 4.47e-12 63.5
MS.gene30844.t1 MTR_7g085810 43.243 74 41 1 29 102 30 102 7.72e-12 62.8
MS.gene30844.t1 MTR_8g085960 43.421 76 40 2 29 102 25 99 8.16e-12 62.4
MS.gene30844.t1 MTR_8g099215 46.914 81 34 2 13 84 82 162 8.25e-12 63.2
MS.gene30844.t1 MTR_4g112490 47.458 59 31 0 29 87 53 111 8.99e-12 61.6
MS.gene30844.t1 MTR_8g006840 52.632 57 26 1 29 84 125 181 1.01e-11 61.6
MS.gene30844.t1 MTR_6g029180 47.222 72 37 1 17 88 22 92 1.05e-11 62.8
MS.gene30844.t1 MTR_6g041970 40.698 86 38 1 29 114 18 90 1.23e-11 58.9
MS.gene30844.t1 MTR_4g100380 56.140 57 24 1 29 84 145 201 1.76e-11 61.6
MS.gene30844.t1 MTR_2g015040 52.632 57 26 1 29 84 63 119 1.93e-11 60.1
MS.gene30844.t1 MTR_5g032820 55.357 56 25 0 29 84 46 101 2.02e-11 62.0
MS.gene30844.t1 MTR_7g081805 52.632 57 26 1 29 84 61 117 2.27e-11 60.8
MS.gene30844.t1 MTR_8g006815 52.632 57 26 1 29 84 96 152 2.29e-11 60.5
MS.gene30844.t1 MTR_7g081815 52.632 57 26 1 29 84 61 117 2.55e-11 60.5
MS.gene30844.t1 MTR_8g032610 52.727 55 26 0 31 85 29 83 2.68e-11 61.6
MS.gene30844.t1 MTR_7g096750 54.386 57 25 1 29 84 20 76 4.42e-11 58.5
MS.gene30844.t1 MTR_3g095190 54.795 73 32 1 29 100 170 242 4.63e-11 61.2
MS.gene30844.t1 MTR_7g011630 45.833 72 36 1 13 84 29 97 5.08e-11 61.2
MS.gene30844.t1 MTR_1g070020 39.130 92 53 2 19 109 60 149 6.60e-11 59.7
MS.gene30844.t1 MTR_6g012970 51.786 56 27 0 29 84 38 93 7.41e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30844.t1 AT4G25470 56.853 197 69 5 6 194 28 216 2.82e-69 210
MS.gene30844.t1 AT4G25480 57.360 197 66 4 7 194 29 216 8.87e-65 199
MS.gene30844.t1 AT5G51990 54.040 198 76 5 6 194 31 222 1.26e-62 194
MS.gene30844.t1 AT4G25490 57.071 198 65 5 7 194 26 213 5.19e-62 192
MS.gene30844.t1 AT1G12610 48.500 200 91 3 7 194 8 207 2.05e-54 172
MS.gene30844.t1 AT1G63030 49.198 187 73 4 12 194 13 181 4.39e-54 170
MS.gene30844.t1 AT1G63030 49.198 187 73 4 12 194 13 181 4.39e-54 170
MS.gene30844.t1 AT5G25810 60.638 94 36 1 18 110 24 117 4.04e-34 120
MS.gene30844.t1 AT5G11590 46.324 136 73 0 25 160 47 182 7.48e-33 118
MS.gene30844.t1 AT4G32800 53.271 107 44 1 16 116 6 112 1.09e-31 114
MS.gene30844.t1 AT2G35700 65.000 80 28 0 24 103 40 119 2.19e-31 113
MS.gene30844.t1 AT2G44940 60.215 93 37 0 18 110 89 181 3.01e-31 115
MS.gene30844.t1 AT2G36450 39.891 183 103 4 17 194 3 183 5.42e-30 109
MS.gene30844.t1 AT4G16750 53.398 103 43 1 6 103 12 114 7.23e-30 108
MS.gene30844.t1 AT1G01250 61.250 80 31 0 24 103 40 119 4.86e-29 107
MS.gene30844.t1 AT3G16280 62.025 79 30 0 25 103 57 135 7.38e-29 107
MS.gene30844.t1 AT3G16280 62.025 79 30 0 25 103 75 153 1.10e-28 107
MS.gene30844.t1 AT5G52020 44.000 175 89 5 25 194 61 231 1.10e-27 104
MS.gene30844.t1 AT3G60490 59.756 82 32 1 23 103 64 145 7.44e-27 103
MS.gene30844.t1 AT2G25820 63.158 76 28 0 28 103 25 100 9.42e-27 102
MS.gene30844.t1 AT1G71450 47.170 106 56 0 28 133 23 128 8.82e-24 93.2
MS.gene30844.t1 AT1G33760 55.056 89 40 0 29 117 20 108 1.20e-20 85.1
MS.gene30844.t1 AT1G21910 46.000 100 33 2 29 114 50 142 2.17e-20 85.5
MS.gene30844.t1 AT2G47520 29.375 160 93 4 5 161 23 165 2.72e-20 84.0
MS.gene30844.t1 AT1G77200 59.740 77 31 0 27 103 41 117 1.39e-19 83.6
MS.gene30844.t1 AT1G12630 40.556 180 95 4 25 194 15 192 6.57e-19 80.5
MS.gene30844.t1 AT1G46768 58.730 63 25 1 24 86 27 88 1.44e-18 78.6
MS.gene30844.t1 AT1G46768 58.730 63 25 1 24 86 27 88 1.67e-18 78.6
MS.gene30844.t1 AT1G46768 58.730 63 25 1 24 86 27 88 1.67e-18 78.6
MS.gene30844.t1 AT4G06746 43.333 90 46 1 1 90 13 97 1.88e-18 78.6
MS.gene30844.t1 AT4G13620 61.017 59 23 0 28 86 231 289 2.49e-18 82.0
MS.gene30844.t1 AT2G22200 53.333 75 33 1 28 100 70 144 2.97e-18 80.5
MS.gene30844.t1 AT3G16770 55.556 72 28 1 15 86 69 136 5.13e-18 79.3
MS.gene30844.t1 AT4G39780 48.780 82 40 1 3 84 69 148 1.04e-17 79.0
MS.gene30844.t1 AT1G22190 54.795 73 31 1 14 86 70 140 1.08e-17 79.0
MS.gene30844.t1 AT5G21960 48.810 84 43 0 27 110 5 88 1.59e-17 77.4
MS.gene30844.t1 AT3G11020 51.282 78 38 0 23 100 72 149 2.71e-17 78.6
MS.gene30844.t1 AT5G65130 53.247 77 34 1 14 88 94 170 3.13e-17 77.8
MS.gene30844.t1 AT5G65130 53.247 77 34 1 14 88 96 172 3.17e-17 77.8
MS.gene30844.t1 AT2G33710 49.383 81 38 1 24 101 65 145 6.02e-17 75.9
MS.gene30844.t1 AT1G74930 45.349 86 47 0 29 114 21 106 6.20e-17 75.5
MS.gene30844.t1 AT2G33710 49.383 81 38 1 24 101 65 145 7.46e-17 75.9
MS.gene30844.t1 AT1G78080 47.674 86 42 2 1 86 127 209 7.60e-17 77.4
MS.gene30844.t1 AT4G36900 56.667 60 26 0 25 84 26 85 1.00e-16 75.1
MS.gene30844.t1 AT3G50260 35.537 121 66 2 22 142 14 122 1.36e-16 73.6
MS.gene30844.t1 AT2G23340 39.423 104 58 1 29 132 28 126 2.49e-16 73.6
MS.gene30844.t1 AT5G67190 57.143 56 24 0 29 84 21 76 3.39e-16 73.2
MS.gene30844.t1 AT1G19210 36.522 115 73 0 29 143 12 126 3.42e-16 73.2
MS.gene30844.t1 AT5G05410 59.322 59 24 0 29 87 79 137 6.94e-16 74.3
MS.gene30844.t1 AT5G05410 60.714 56 22 0 29 84 79 134 9.84e-16 74.3
MS.gene30844.t1 AT1G36060 61.404 57 22 0 28 84 142 198 1.27e-15 73.9
MS.gene30844.t1 AT4G28140 55.932 59 26 0 28 86 142 200 1.45e-15 73.6
MS.gene30844.t1 AT2G20880 39.450 109 61 1 28 136 186 289 1.79e-15 73.6
MS.gene30844.t1 AT3G15210 60.714 56 22 0 29 84 25 80 2.51e-15 71.6
MS.gene30844.t1 AT5G13330 54.688 64 27 1 25 88 37 98 2.98e-15 71.2
MS.gene30844.t1 AT3G57600 51.389 72 35 0 13 84 12 83 4.30e-15 72.0
MS.gene30844.t1 AT5G07580 49.367 79 37 2 23 100 106 182 4.79e-15 70.9
MS.gene30844.t1 AT5G61600 60.656 61 21 2 25 84 86 144 5.70e-15 71.2
MS.gene30844.t1 AT5G61890 54.688 64 27 1 25 88 88 149 5.76e-15 71.2
MS.gene30844.t1 AT5G44210 58.929 56 23 0 29 84 33 88 6.57e-15 70.1
MS.gene30844.t1 AT1G75490 50.000 70 35 0 28 97 41 110 7.05e-15 70.1
MS.gene30844.t1 AT1G03800 51.471 68 30 1 17 84 44 108 1.07e-14 70.5
MS.gene30844.t1 AT5G64750 41.304 92 48 2 39 130 195 280 1.24e-14 71.6
MS.gene30844.t1 AT5G51190 57.143 63 24 2 23 84 68 128 1.52e-14 69.7
MS.gene30844.t1 AT1G72360 44.737 76 42 0 9 84 54 129 1.97e-14 70.1
MS.gene30844.t1 AT1G15360 58.929 56 23 0 29 84 7 62 1.99e-14 68.9
MS.gene30844.t1 AT1G15360 58.929 56 23 0 29 84 7 62 1.99e-14 68.9
MS.gene30844.t1 AT5G47230 52.778 72 33 1 14 84 141 212 2.12e-14 70.5
MS.gene30844.t1 AT1G72360 49.206 63 32 0 22 84 18 80 2.23e-14 68.9
MS.gene30844.t1 AT5G43410 55.000 60 26 1 26 84 12 71 2.86e-14 67.0
MS.gene30844.t1 AT4G11140 41.935 93 41 2 29 114 87 173 3.28e-14 69.7
MS.gene30844.t1 AT4G27950 56.140 57 25 0 29 85 118 174 3.45e-14 70.1
MS.gene30844.t1 AT1G71520 34.043 141 71 5 23 157 8 132 4.07e-14 67.0
MS.gene30844.t1 AT1G72360 49.206 63 32 0 22 84 69 131 5.51e-14 68.6
MS.gene30844.t1 AT5G25190 52.941 68 32 0 29 96 8 75 5.87e-14 67.4
MS.gene30844.t1 AT3G61630 46.835 79 36 1 29 107 105 177 7.50e-14 68.9
MS.gene30844.t1 AT1G22810 39.785 93 41 2 29 113 14 99 8.83e-14 65.9
MS.gene30844.t1 AT5G25390 55.357 56 25 0 29 84 7 62 9.13e-14 67.0
MS.gene30844.t1 AT1G43160 38.931 131 67 4 29 158 61 179 9.61e-14 67.0
MS.gene30844.t1 AT3G23230 51.613 62 29 1 29 89 20 81 9.67e-14 65.9
MS.gene30844.t1 AT4G31060 41.463 82 44 1 7 84 1 82 1.04e-13 66.6
MS.gene30844.t1 AT3G20310 53.226 62 29 0 23 84 21 82 2.94e-13 66.6
MS.gene30844.t1 AT2G40340 46.479 71 38 0 29 99 14 84 3.71e-13 66.6
MS.gene30844.t1 AT2G40340 46.479 71 38 0 29 99 14 84 3.71e-13 66.6
MS.gene30844.t1 AT2G40340 46.479 71 38 0 29 99 14 84 3.71e-13 66.6
MS.gene30844.t1 AT2G40340 33.858 127 77 2 29 155 72 191 4.28e-13 66.6
MS.gene30844.t1 AT5G53290 54.386 57 26 0 29 85 125 181 4.51e-13 67.0
MS.gene30844.t1 AT1G28370 55.357 56 25 0 29 84 20 75 5.33e-13 64.3
MS.gene30844.t1 AT5G18450 46.250 80 39 1 5 84 14 89 5.36e-13 66.6
MS.gene30844.t1 AT1G28360 48.649 74 31 1 29 102 12 78 5.83e-13 64.7
MS.gene30844.t1 AT4G17490 48.780 82 37 3 6 84 114 193 6.80e-13 65.9
MS.gene30844.t1 AT1G28370 55.357 56 25 0 29 84 58 113 7.69e-13 64.7
MS.gene30844.t1 AT2G40340 46.479 71 38 0 29 99 72 142 7.98e-13 66.2
MS.gene30844.t1 AT2G40340 46.479 71 38 0 29 99 79 149 8.35e-13 66.2
MS.gene30844.t1 AT4G23750 52.632 57 27 0 29 85 122 178 1.10e-12 65.9
MS.gene30844.t1 AT4G23750 52.632 57 27 0 29 85 122 178 1.10e-12 65.9
MS.gene30844.t1 AT1G50640 57.143 56 24 0 29 84 28 83 1.62e-12 64.3
MS.gene30844.t1 AT5G47220 56.140 57 24 1 29 84 117 173 2.17e-12 63.9
MS.gene30844.t1 AT2G46310 51.786 56 27 0 29 84 99 154 2.36e-12 64.7
MS.gene30844.t1 AT5G19790 53.448 58 27 0 29 86 22 79 2.80e-12 63.9
MS.gene30844.t1 AT1G12890 44.872 78 40 1 7 84 2 76 3.82e-12 63.2
MS.gene30844.t1 AT1G77640 45.556 90 43 1 29 112 43 132 5.57e-12 63.2
MS.gene30844.t1 AT5G61590 51.250 80 36 2 19 97 99 176 9.12e-12 61.6
MS.gene30844.t1 AT4G17500 56.140 57 24 1 29 84 148 204 1.46e-11 62.0
MS.gene30844.t1 AT3G23240 50.000 58 28 1 29 85 82 139 1.53e-11 61.2
MS.gene30844.t1 AT1G24590 50.769 65 29 1 29 93 58 119 2.23e-11 62.0
MS.gene30844.t1 AT1G12980 55.357 56 25 0 29 84 57 112 2.83e-11 61.6
MS.gene30844.t1 AT2G44840 54.386 57 25 1 29 84 92 148 3.30e-11 60.5
MS.gene30844.t1 AT5G25390 51.786 56 24 1 29 84 7 59 3.57e-11 59.7
MS.gene30844.t1 AT5G07310 46.835 79 40 1 6 84 71 147 5.16e-11 60.5
MS.gene30844.t1 AT2G40350 48.214 56 29 0 29 84 74 129 6.07e-11 58.9
MS.gene30844.t1 AT2G40350 48.214 56 29 0 29 84 67 122 7.37e-11 58.5

Find 58 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATATATACATATGTTT+AGG 0.215595 6.2:+58773728 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6.2:+58773839 MS.gene30844:CDS
ACGTTGCAGCGATGGCATTA+AGG 0.265866 6.2:+58773947 MS.gene30844:CDS
TTTCTCCCTGCTGGTTTCTT+CGG 0.268369 6.2:-58773775 None:intergenic
CTAATATATACATATGTTTA+GGG 0.296079 6.2:+58773729 None:intergenic
TTCTCCCTGCTGGTTTCTTC+GGG 0.296529 6.2:-58773774 None:intergenic
AGCAGGGAGAAAGAAGTTTA+AGG 0.299906 6.2:+58773786 MS.gene30844:CDS
CAAATCCTAGTCTTCTTGTT+TGG 0.307227 6.2:-58773880 None:intergenic
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6.2:+58774212 MS.gene30844:CDS
TTAAACTTCTTTCTCCCTGC+TGG 0.375374 6.2:-58773784 None:intergenic
CGTTGCAGCGATGGCATTAA+GGG 0.377499 6.2:+58773948 MS.gene30844:CDS
TCGCTGCAACGTCGTGTGCT+CGG 0.389912 6.2:-58773936 None:intergenic
CGCTGCAACGTCGTGTGCTC+GGG 0.398592 6.2:-58773935 None:intergenic
AATGTCCCCTACACATAGTT+TGG 0.427502 6.2:+58774239 MS.gene30844:CDS
CAAACAAGAAGACTAGGATT+TGG 0.429238 6.2:+58773881 MS.gene30844:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6.2:+58773840 MS.gene30844:CDS
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6.2:+58773824 MS.gene30844:CDS
GTAGTCGTTAATGTCTTGTC+TGG 0.496095 6.2:-58774084 None:intergenic
ACTCGCCACCCGGTGTATAG+AGG 0.496516 6.2:+58773811 MS.gene30844:CDS
GCCATATTCCTCCACAACTC+TGG 0.506491 6.2:-58774213 None:intergenic
CTGAAACAAAAGACATTCAA+AGG 0.509319 6.2:+58774031 MS.gene30844:CDS
CATGCACCAAACTATGTGTA+GGG 0.511168 6.2:-58774245 None:intergenic
CGGGCAGCCATCTCAGCCGT+TGG 0.512810 6.2:-58773916 None:intergenic
GGCAGCTGCAGAAGCCGCTG+AGG 0.513356 6.2:+58774053 MS.gene30844:CDS
TGTGGAAGTCGAAGAAGAAG+AGG 0.518171 6.2:+58774176 MS.gene30844:CDS
AGCACACGACGTTGCAGCGA+TGG 0.528674 6.2:+58773939 MS.gene30844:CDS
TACTGACATTGACACGGTTG+TGG 0.536605 6.2:+58774104 MS.gene30844:CDS
TGTCGTTGCAGTCGAAGAAG+AGG 0.540894 6.2:+58774131 MS.gene30844:CDS
AGTTGCCCGAAGAAACCAGC+AGG 0.545231 6.2:+58773769 MS.gene30844:CDS
CGAGTCTGCAAAATTGAGAC+AGG 0.547018 6.2:-58773980 None:intergenic
AAGAAGACTAGGATTTGGCT+AGG 0.552639 6.2:+58773886 MS.gene30844:CDS
TAAATGGGTGTGTGAAATGA+GGG 0.554317 6.2:+58773855 MS.gene30844:CDS
TGTACAATTTCAAGATGAAG+AGG 0.556998 6.2:+58774284 MS.gene30844:CDS
GTTTAAGGAGACTCGCCACC+CGG 0.558195 6.2:+58773801 MS.gene30844:CDS
GTTTCAGCAGAGGCAGGAGT+AGG 0.561690 6.2:-58774015 None:intergenic
GTTTAGGGAGGGGCAATTAG+CGG 0.561963 6.2:+58773744 MS.gene30844:CDS
TATATACATATGTTTAGGGA+GGG 0.562832 6.2:+58773733 None:intergenic
ATATACATATGTTTAGGGAG+GGG 0.565127 6.2:+58773734 None:intergenic
TCATGCACCAAACTATGTGT+AGG 0.576797 6.2:-58774246 None:intergenic
TTCCTCACACCTCTATACAC+CGG 0.578151 6.2:-58773820 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6.2:-58773819 None:intergenic
GGGAACCAAACAAGAAGACT+AGG 0.587015 6.2:+58773875 MS.gene30844:CDS
TGAAACAAAAGACATTCAAA+GGG 0.589399 6.2:+58774032 MS.gene30844:CDS
ATAAATGGGTGTGTGAAATG+AGG 0.599450 6.2:+58773854 MS.gene30844:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6.2:+58774202 MS.gene30844:CDS
AAGATGAAGAGGTATCGCTA+TGG 0.623814 6.2:+58774295 MS.gene30844:CDS
ATATATACATATGTTTAGGG+AGG 0.634372 6.2:+58773732 None:intergenic
GTTGCAGCGATGGCATTAAG+GGG 0.638430 6.2:+58773949 MS.gene30844:CDS
AACGACTACTGACATTGACA+CGG 0.655325 6.2:+58774098 MS.gene30844:CDS
AGAAGACTAGGATTTGGCTA+GGG 0.661545 6.2:+58773887 MS.gene30844:CDS
TTCTTCGACTGCAACGACAA+CGG 0.675808 6.2:-58774127 None:intergenic
GTCTGGTCTGAAAGCCTCAG+CGG 0.676858 6.2:-58774067 None:intergenic
ATGCACCAAACTATGTGTAG+GGG 0.684106 6.2:-58774244 None:intergenic
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6.2:+58774205 MS.gene30844:CDS
CAAAATTGAGACAGGCGTAG+CGG 0.688544 6.2:-58773972 None:intergenic
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6.2:+58773818 MS.gene30844:CDS
TCACACCTCTATACACCGGG+TGG 0.726886 6.2:-58773816 None:intergenic
GTTGCCCGAAGAAACCAGCA+GGG 0.737979 6.2:+58773770 MS.gene30844:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGAAACAAAAGACATTCAAA+GGG + chr6.2:58774032-58774051 MS.gene30844:CDS 25.0%
CTGAAACAAAAGACATTCAA+AGG + chr6.2:58774031-58774050 MS.gene30844:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6.2:58773840-58773859 MS.gene30844:CDS 30.0%
TGTACAATTTCAAGATGAAG+AGG + chr6.2:58774284-58774303 MS.gene30844:CDS 30.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6.2:58773854-58773873 MS.gene30844:CDS 35.0%
CAAACAAGAAGACTAGGATT+TGG + chr6.2:58773881-58773900 MS.gene30844:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6.2:58773839-58773858 MS.gene30844:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6.2:58773855-58773874 MS.gene30844:CDS 35.0%
! CAAATCCTAGTCTTCTTGTT+TGG - chr6.2:58773883-58773902 None:intergenic 35.0%
!! AATGTCTTTTGTTTCAGCAG+AGG - chr6.2:58774028-58774047 None:intergenic 35.0%
!! AGTGCTGAATATGTTTTGTG+TGG + chr6.2:58774158-58774177 MS.gene30844:CDS 35.0%
AACGACTACTGACATTGACA+CGG + chr6.2:58774098-58774117 MS.gene30844:CDS 40.0%
AAGAAGACTAGGATTTGGCT+AGG + chr6.2:58773886-58773905 MS.gene30844:CDS 40.0%
AATGTCCCCTACACATAGTT+TGG + chr6.2:58774239-58774258 MS.gene30844:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + chr6.2:58773887-58773906 MS.gene30844:CDS 40.0%
AGCAGGGAGAAAGAAGTTTA+AGG + chr6.2:58773786-58773805 MS.gene30844:CDS 40.0%
ATGCACCAAACTATGTGTAG+GGG - chr6.2:58774247-58774266 None:intergenic 40.0%
CATGCACCAAACTATGTGTA+GGG - chr6.2:58774248-58774267 None:intergenic 40.0%
GTAGTCGTTAATGTCTTGTC+TGG - chr6.2:58774087-58774106 None:intergenic 40.0%
TCATGCACCAAACTATGTGT+AGG - chr6.2:58774249-58774268 None:intergenic 40.0%
TGTTGAATATGCCAGAGTTG+TGG + chr6.2:58774202-58774221 MS.gene30844:CDS 40.0%
TTAAACTTCTTTCTCCCTGC+TGG - chr6.2:58773787-58773806 None:intergenic 40.0%
! CTGTCTCAATTTTGCAGACT+CGG + chr6.2:58773981-58774000 MS.gene30844:CDS 40.0%
!! AAGATGAAGAGGTATCGCTA+TGG + chr6.2:58774295-58774314 MS.gene30844:CDS 40.0%
CAAAATTGAGACAGGCGTAG+CGG - chr6.2:58773975-58773994 None:intergenic 45.0%
CGAGTCTGCAAAATTGAGAC+AGG - chr6.2:58773983-58774002 None:intergenic 45.0%
GGGAACCAAACAAGAAGACT+AGG + chr6.2:58773875-58773894 MS.gene30844:CDS 45.0%
TACTGACATTGACACGGTTG+TGG + chr6.2:58774104-58774123 MS.gene30844:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + chr6.2:58774205-58774224 MS.gene30844:CDS 45.0%
TGTGGAAGTCGAAGAAGAAG+AGG + chr6.2:58774176-58774195 MS.gene30844:CDS 45.0%
TTCCTCACACCTCTATACAC+CGG - chr6.2:58773823-58773842 None:intergenic 45.0%
TTCTTCGACTGCAACGACAA+CGG - chr6.2:58774130-58774149 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + chr6.2:58773824-58773843 MS.gene30844:CDS 45.0%
! TTGGCTAGGGACTTTTCCAA+CGG + chr6.2:58773900-58773919 MS.gene30844:CDS 45.0%
!! TCTTTTGTTTCAGCAGAGGC+AGG - chr6.2:58774024-58774043 None:intergenic 45.0%
!! TTTCTCCCTGCTGGTTTCTT+CGG - chr6.2:58773778-58773797 None:intergenic 45.0%
!!! TCAATTTTGCAGACTCGGTG+TGG + chr6.2:58773986-58774005 MS.gene30844:CDS 45.0%
ACGTTGCAGCGATGGCATTA+AGG + chr6.2:58773947-58773966 MS.gene30844:CDS 50.0%
CGTTGCAGCGATGGCATTAA+GGG + chr6.2:58773948-58773967 MS.gene30844:CDS 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + chr6.2:58774212-58774231 MS.gene30844:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - chr6.2:58774216-58774235 None:intergenic 50.0%
GTTGCAGCGATGGCATTAAG+GGG + chr6.2:58773949-58773968 MS.gene30844:CDS 50.0%
GTTTAGGGAGGGGCAATTAG+CGG + chr6.2:58773744-58773763 MS.gene30844:CDS 50.0%
TCCTCACACCTCTATACACC+GGG - chr6.2:58773822-58773841 None:intergenic 50.0%
TGTCGTTGCAGTCGAAGAAG+AGG + chr6.2:58774131-58774150 MS.gene30844:CDS 50.0%
! GACTTTTCCAACGGCTGAGA+TGG + chr6.2:58773909-58773928 MS.gene30844:CDS 50.0%
!! TTCTCCCTGCTGGTTTCTTC+GGG - chr6.2:58773777-58773796 None:intergenic 50.0%
!!! ATTTTGCAGACTCGGTGTGG+AGG + chr6.2:58773989-58774008 MS.gene30844:CDS 50.0%
AGTTGCCCGAAGAAACCAGC+AGG + chr6.2:58773769-58773788 MS.gene30844:CDS 55.0%
GTCTGGTCTGAAAGCCTCAG+CGG - chr6.2:58774070-58774089 None:intergenic 55.0%
GTTGCCCGAAGAAACCAGCA+GGG + chr6.2:58773770-58773789 MS.gene30844:CDS 55.0%
GTTTAAGGAGACTCGCCACC+CGG + chr6.2:58773801-58773820 MS.gene30844:CDS 55.0%
GTTTCAGCAGAGGCAGGAGT+AGG - chr6.2:58774018-58774037 None:intergenic 55.0%
TCACACCTCTATACACCGGG+TGG - chr6.2:58773819-58773838 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + chr6.2:58773818-58773837 MS.gene30844:CDS 55.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6.2:58773811-58773830 MS.gene30844:CDS 60.0%
AGCACACGACGTTGCAGCGA+TGG + chr6.2:58773939-58773958 MS.gene30844:CDS 60.0%
TCGCTGCAACGTCGTGTGCT+CGG - chr6.2:58773939-58773958 None:intergenic 60.0%
CGCTGCAACGTCGTGTGCTC+GGG - chr6.2:58773938-58773957 None:intergenic 65.0%
CGGGCAGCCATCTCAGCCGT+TGG - chr6.2:58773919-58773938 None:intergenic 70.0%
GGCAGCTGCAGAAGCCGCTG+AGG + chr6.2:58774053-58774072 MS.gene30844:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 58773742 58774326 58773742 ID=MS.gene30844
chr6.2 mRNA 58773742 58774326 58773742 ID=MS.gene30844.t1;Parent=MS.gene30844
chr6.2 exon 58773742 58774326 58773742 ID=MS.gene30844.t1.exon1;Parent=MS.gene30844.t1
chr6.2 CDS 58773742 58774326 58773742 ID=cds.MS.gene30844.t1;Parent=MS.gene30844.t1
Gene Sequence

>MS.gene30844

ATGTTTAGGGAGGGGCAATTAGCGGCAAGTTGCCCGAAGAAACCAGCAGGGAGAAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCAAACAAGAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCTGAGATGGCTGCCCGAGCACACGACGTTGCAGCGATGGCATTAAGGGGCCGCTACGCCTGTCTCAATTTTGCAGACTCGGTGTGGAGGCTTCCTACTCCTGCCTCTGCTGAAACAAAAGACATTCAAAGGGCAGCTGCAGAAGCCGCTGAGGCTTTCAGACCAGACAAGACATTAACGACTACTGACATTGACACGGTTGTGGCCGTTGTCGTTGCAGTCGAAGAAGAGGAAGAAGTGCTGAATATGTTTTGTGTGGAAGTCGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTTTGGTGCATGAGTATGAAGATTTTGATGTACAATTTCAAGATGAAGAGGTATCGCTATGGAACTTCTAA

Protein sequence

>MS.gene30844.t1

MFREGQLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPTPASAETKDIQRAAAEAAEAFRPDKTLTTTDIDTVVAVVVAVEEEEEVLNMFCVEVEEEEEVLNMPELWRNMALMSPTHSLVHEYEDFDVQFQDEEVSLWNF