AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86599


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86599.t1 MTR_6g465530 90.500 200 17 2 1 200 1 198 6.35e-117 330
MS.gene86599.t1 MTR_6g465510 86.603 209 18 2 1 200 1 208 3.90e-111 316
MS.gene86599.t1 MTR_6g465420 76.166 193 39 3 3 194 24 210 8.91e-103 297
MS.gene86599.t1 MTR_6g465460 77.368 190 33 3 7 194 28 209 1.35e-101 294
MS.gene86599.t1 MTR_6g465450 78.462 195 34 3 2 194 23 211 3.08e-100 290
MS.gene86599.t1 MTR_6g465430 76.804 194 36 3 3 194 24 210 8.88e-97 281
MS.gene86599.t1 MTR_6g465690 74.468 188 40 2 5 191 35 215 1.67e-93 273
MS.gene86599.t1 MTR_6g466000 68.966 203 50 2 6 200 30 227 1.95e-93 272
MS.gene86599.t1 MTR_6g466130 71.500 200 51 3 1 200 35 228 2.54e-90 264
MS.gene86599.t1 MTR_6g465850 54.694 245 62 2 5 200 35 279 9.85e-74 224
MS.gene86599.t1 MTR_1g101600 59.204 201 66 4 4 200 12 200 4.01e-68 207
MS.gene86599.t1 MTR_6g465990 58.128 203 52 3 6 200 16 193 1.47e-65 200
MS.gene86599.t1 MTR_6g466020 57.143 189 52 3 10 197 20 180 1.13e-59 185
MS.gene86599.t1 MTR_5g010930 47.619 210 78 7 11 200 27 224 2.82e-51 165
MS.gene86599.t1 MTR_5g010940 46.154 208 96 5 4 200 25 227 9.00e-50 161
MS.gene86599.t1 MTR_5g010910 47.449 196 87 5 16 200 32 222 1.15e-48 158
MS.gene86599.t1 MTR_4g102660 51.643 213 80 9 3 200 14 218 2.25e-47 155
MS.gene86599.t1 MTR_3g110205 56.436 101 43 1 23 122 32 132 2.77e-32 115
MS.gene86599.t1 MTR_8g006410 65.000 80 28 0 28 107 47 126 5.14e-32 115
MS.gene86599.t1 MTR_7g117690 60.227 88 35 0 20 107 15 102 3.02e-31 112
MS.gene86599.t1 MTR_2g101340 55.446 101 39 2 13 107 15 115 1.36e-30 111
MS.gene86599.t1 MTR_7g046260 58.511 94 32 1 21 107 42 135 1.55e-30 112
MS.gene86599.t1 MTR_8g013860 54.639 97 43 1 12 107 25 121 2.81e-30 110
MS.gene86599.t1 MTR_2g085015 39.759 166 80 5 27 174 41 204 4.77e-30 110
MS.gene86599.t1 MTR_8g102800 56.566 99 43 0 23 121 27 125 8.73e-30 110
MS.gene86599.t1 MTR_5g012910 62.025 79 30 0 29 107 24 102 2.04e-29 107
MS.gene86599.t1 MTR_6g088405 62.821 78 29 0 30 107 41 118 5.01e-29 107
MS.gene86599.t1 MTR_8g027465 56.383 94 38 1 17 107 23 116 1.19e-28 105
MS.gene86599.t1 MTR_4g100650 60.256 78 31 0 30 107 71 148 1.88e-25 99.4
MS.gene86599.t1 MTR_4g102670 55.696 79 34 1 29 107 11 88 7.33e-25 95.9
MS.gene86599.t1 MTR_6g088425 61.628 86 33 0 29 114 45 130 4.00e-24 95.5
MS.gene86599.t1 MTR_4g035430 50.000 92 46 0 23 114 22 113 7.89e-24 94.4
MS.gene86599.t1 MTR_1g006660 57.609 92 35 1 20 107 30 121 3.89e-22 90.9
MS.gene86599.t1 MTR_5g008590 36.932 176 102 3 33 199 11 186 4.41e-22 89.0
MS.gene86599.t1 MTR_5g008550 35.915 142 86 2 33 169 21 162 4.22e-20 84.0
MS.gene86599.t1 MTR_2g435590 52.000 75 33 1 17 91 83 154 5.82e-18 79.7
MS.gene86599.t1 MTR_5g008470 45.238 84 46 0 35 118 77 160 1.21e-17 77.4
MS.gene86599.t1 MTR_3g102100 52.113 71 33 1 18 88 31 100 1.27e-17 77.0
MS.gene86599.t1 MTR_1g014780 56.667 60 26 0 32 91 37 96 1.48e-17 78.2
MS.gene86599.t1 MTR_2g043030 27.778 198 121 4 22 200 8 202 4.05e-17 76.3
MS.gene86599.t1 MTR_7g021010 53.623 69 31 1 25 92 3 71 4.28e-17 74.7
MS.gene86599.t1 MTR_8g090350 44.086 93 47 2 17 104 95 187 5.18e-17 77.4
MS.gene86599.t1 MTR_2g105380 52.941 68 32 0 21 88 105 172 6.40e-17 78.2
MS.gene86599.t1 MTR_1g087920 46.739 92 47 1 11 100 53 144 7.16e-17 77.4
MS.gene86599.t1 MTR_1g060910 35.838 173 71 8 17 174 3 150 7.25e-17 75.1
MS.gene86599.t1 MTR_7g020980 48.101 79 39 1 14 92 34 110 8.94e-17 74.7
MS.gene86599.t1 MTR_3g105510 44.706 85 47 0 33 117 37 121 9.27e-17 76.3
MS.gene86599.t1 MTR_1g014820 42.391 92 49 1 32 119 26 117 9.80e-17 76.3
MS.gene86599.t1 MTR_1g101550 42.254 142 76 4 33 170 57 196 1.39e-16 75.5
MS.gene86599.t1 MTR_3g074130 52.564 78 34 2 14 90 132 207 1.60e-16 76.6
MS.gene86599.t1 MTR_1g019110 37.374 99 59 1 33 131 44 139 1.76e-16 73.9
MS.gene86599.t1 MTR_4g086220 62.500 56 21 0 33 88 96 151 1.99e-16 75.1
MS.gene86599.t1 MTR_7g021010 43.373 83 47 0 29 111 47 129 2.44e-16 73.6
MS.gene86599.t1 MTR_2g043050 45.882 85 46 0 32 116 18 102 2.56e-16 74.3
MS.gene86599.t1 MTR_5g062700 59.322 59 24 0 32 90 172 230 2.74e-16 76.3
MS.gene86599.t1 MTR_1g028560 59.649 57 23 0 33 89 115 171 3.59e-16 75.9
MS.gene86599.t1 MTR_1g090170 55.556 63 28 0 28 90 147 209 3.67e-16 75.5
MS.gene86599.t1 MTR_5g082950 64.286 56 20 0 33 88 66 121 3.98e-16 75.5
MS.gene86599.t1 MTR_1g014860 51.562 64 31 0 28 91 17 80 4.25e-16 73.9
MS.gene86599.t1 MTR_5g083340 60.345 58 23 0 33 90 85 142 4.63e-16 75.9
MS.gene86599.t1 MTR_8g092460 56.667 60 26 0 33 92 145 204 4.72e-16 75.1
MS.gene86599.t1 MTR_2g090235 59.322 59 24 0 32 90 217 275 5.03e-16 75.9
MS.gene86599.t1 MTR_1g090170 55.556 63 28 0 28 90 234 296 5.95e-16 75.5
MS.gene86599.t1 MTR_4g086160 60.714 56 22 0 33 88 96 151 8.08e-16 73.6
MS.gene86599.t1 MTR_2g089170 36.154 130 67 4 33 158 65 182 8.87e-16 72.4
MS.gene86599.t1 MTR_5g016750 57.143 56 24 0 33 88 25 80 9.23e-16 72.4
MS.gene86599.t1 MTR_4g086190 60.714 56 22 0 33 88 96 151 1.11e-15 73.2
MS.gene86599.t1 MTR_1g014800 53.333 60 28 0 32 91 30 89 1.46e-15 72.4
MS.gene86599.t1 MTR_4g086165 60.714 56 22 0 33 88 82 137 1.66e-15 72.0
MS.gene86599.t1 MTR_2g078680 60.714 56 22 0 33 88 31 86 1.90e-15 72.0
MS.gene86599.t1 MTR_3g053690 58.333 60 25 0 29 88 23 82 2.17e-15 72.0
MS.gene86599.t1 MTR_4g114570 52.113 71 27 1 33 103 7 70 2.26e-15 72.0
MS.gene86599.t1 MTR_7g092190 62.500 56 21 0 33 88 30 85 2.86e-15 72.8
MS.gene86599.t1 MTR_3g105480 44.578 83 46 0 35 117 33 115 3.52e-15 71.6
MS.gene86599.t1 MTR_5g083330 52.055 73 35 0 18 90 20 92 4.64e-15 72.4
MS.gene86599.t1 MTR_1g074310 54.839 62 27 1 33 93 21 82 5.80e-15 69.3
MS.gene86599.t1 MTR_5g009620 44.565 92 45 1 3 88 76 167 5.91e-15 72.0
MS.gene86599.t1 MTR_4g078710 36.893 103 59 1 33 135 28 124 6.14e-15 70.9
MS.gene86599.t1 MTR_8g022820 51.515 66 32 0 23 88 113 178 7.15e-15 72.4
MS.gene86599.t1 MTR_8g022820 51.515 66 32 0 23 88 114 179 7.38e-15 72.4
MS.gene86599.t1 MTR_8g022820 51.515 66 32 0 23 88 114 179 7.38e-15 72.4
MS.gene86599.t1 MTR_2g438180 58.065 62 25 1 33 93 14 75 7.56e-15 68.6
MS.gene86599.t1 MTR_7g028925 55.000 60 24 1 32 91 28 84 8.64e-15 67.4
MS.gene86599.t1 MTR_0939s0010 58.929 56 23 0 33 88 65 120 9.69e-15 69.7
MS.gene86599.t1 MTR_2g015050 52.174 69 32 1 21 88 122 190 1.47e-14 70.5
MS.gene86599.t1 MTR_4g010640 58.929 56 23 0 33 88 7 62 1.83e-14 69.3
MS.gene86599.t1 MTR_2g103700 55.000 60 27 0 33 92 7 66 3.00e-14 68.2
MS.gene86599.t1 MTR_3g072610 43.810 105 53 3 17 117 11 113 3.06e-14 68.9
MS.gene86599.t1 MTR_2g014340 50.704 71 32 1 18 88 7 74 3.77e-14 68.2
MS.gene86599.t1 MTR_3g090760 32.237 152 91 2 17 158 89 238 5.01e-14 69.7
MS.gene86599.t1 MTR_1g048610 56.140 57 24 1 33 88 89 145 6.39e-14 68.2
MS.gene86599.t1 MTR_4g054740 43.023 86 43 2 8 92 77 157 7.54e-14 68.2
MS.gene86599.t1 MTR_3g106290 60.714 56 22 0 33 88 8 63 7.74e-14 67.4
MS.gene86599.t1 MTR_1g070070 56.140 57 24 1 33 88 21 77 1.10e-13 65.9
MS.gene86599.t1 MTR_4g100420 51.471 68 30 2 22 88 148 213 1.14e-13 68.6
MS.gene86599.t1 MTR_2g043020 28.947 190 110 5 32 200 18 203 1.36e-13 67.0
MS.gene86599.t1 MTR_4g008860 60.714 56 22 0 33 88 8 63 1.61e-13 66.6
MS.gene86599.t1 MTR_4g054360 45.122 82 39 2 12 92 108 184 1.85e-13 67.4
MS.gene86599.t1 MTR_5g085100 47.674 86 35 2 13 98 29 104 1.86e-13 67.8
MS.gene86599.t1 MTR_2g014300 58.929 56 23 0 33 88 15 70 1.97e-13 65.9
MS.gene86599.t1 MTR_1g074230 57.895 57 23 1 33 88 19 75 2.38e-13 64.7
MS.gene86599.t1 MTR_2g016730 42.857 91 46 2 22 111 11 96 2.44e-13 67.8
MS.gene86599.t1 MTR_4g100450 48.649 74 37 1 16 88 137 210 2.49e-13 67.4
MS.gene86599.t1 MTR_5g085070 51.351 74 26 2 25 98 46 109 2.96e-13 67.0
MS.gene86599.t1 MTR_2g043040 41.176 85 50 0 32 116 18 102 3.29e-13 66.2
MS.gene86599.t1 MTR_5g075570 43.836 73 39 1 16 88 109 179 5.88e-13 66.2
MS.gene86599.t1 MTR_8g099215 48.148 81 33 2 17 88 82 162 1.55e-12 65.5
MS.gene86599.t1 MTR_5g008540 47.541 61 32 0 35 95 26 86 1.65e-12 61.6
MS.gene86599.t1 MTR_4g088005 47.826 69 35 1 21 88 45 113 1.94e-12 62.0
MS.gene86599.t1 MTR_4g054860 45.783 83 39 3 11 92 114 191 2.33e-12 64.3
MS.gene86599.t1 MTR_8g069360 53.571 56 26 0 33 88 44 99 2.37e-12 65.1
MS.gene86599.t1 MTR_1g090290 51.613 62 27 2 28 88 110 169 2.82e-12 63.2
MS.gene86599.t1 MTR_1g074250 49.206 63 30 1 30 90 16 78 2.97e-12 61.6
MS.gene86599.t1 MTR_4g111915 47.458 59 31 0 33 91 53 111 4.67e-12 61.2
MS.gene86599.t1 MTR_6g029180 46.667 75 39 1 18 92 19 92 7.13e-12 63.5
MS.gene86599.t1 MTR_7g081815 52.632 57 26 1 33 88 61 117 1.13e-11 61.6
MS.gene86599.t1 MTR_8g006840 52.632 57 26 1 33 88 125 181 1.18e-11 61.6
MS.gene86599.t1 MTR_7g081805 52.632 57 26 1 33 88 61 117 1.22e-11 61.6
MS.gene86599.t1 MTR_6g041970 39.535 86 39 1 33 118 18 90 1.36e-11 58.9
MS.gene86599.t1 MTR_4g100380 56.140 57 24 1 33 88 145 201 1.45e-11 62.0
MS.gene86599.t1 MTR_5g008790 50.000 60 28 1 33 90 18 77 1.58e-11 60.5
MS.gene86599.t1 MTR_4g112490 47.458 59 31 0 33 91 53 111 1.60e-11 61.2
MS.gene86599.t1 MTR_8g085960 34.234 111 68 4 21 128 14 122 1.68e-11 61.6
MS.gene86599.t1 MTR_2g015040 52.632 57 26 1 33 88 63 119 1.91e-11 60.1
MS.gene86599.t1 MTR_7g096750 49.296 71 32 2 22 88 6 76 2.34e-11 59.3
MS.gene86599.t1 MTR_8g006815 52.632 57 26 1 33 88 96 152 2.54e-11 60.5
MS.gene86599.t1 MTR_7g085810 50.000 60 30 0 33 92 30 89 2.57e-11 61.2
MS.gene86599.t1 MTR_5g032820 55.357 56 25 0 33 88 46 101 2.64e-11 62.0
MS.gene86599.t1 MTR_7g011630 45.833 72 36 1 17 88 29 97 2.95e-11 62.0
MS.gene86599.t1 MTR_8g023700 29.560 159 86 2 32 164 116 274 2.97e-11 62.0
MS.gene86599.t1 MTR_8g032610 42.105 76 41 1 17 89 8 83 3.47e-11 61.2
MS.gene86599.t1 MTR_4g119270 42.466 73 40 1 18 88 36 108 3.90e-11 61.2
MS.gene86599.t1 MTR_3g095190 54.795 73 32 1 33 104 170 242 5.60e-11 60.8
MS.gene86599.t1 MTR_6g012970 51.786 56 27 0 33 88 38 93 5.87e-11 61.2
MS.gene86599.t1 MTR_7g081795 50.877 57 27 1 33 88 60 116 8.30e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86599.t1 AT4G25470 55.779 199 70 5 10 200 28 216 1.98e-68 208
MS.gene86599.t1 AT4G25480 55.779 199 68 4 11 200 29 216 1.53e-62 193
MS.gene86599.t1 AT4G25490 56.000 200 66 5 11 200 26 213 3.62e-61 190
MS.gene86599.t1 AT5G51990 51.000 200 81 4 10 200 31 222 3.10e-60 188
MS.gene86599.t1 AT1G12610 47.343 207 97 4 5 200 2 207 1.60e-53 170
MS.gene86599.t1 AT1G63030 45.918 196 88 3 6 200 3 181 5.53e-53 168
MS.gene86599.t1 AT1G63030 45.918 196 88 3 6 200 3 181 5.53e-53 168
MS.gene86599.t1 AT5G25810 58.511 94 38 1 22 114 24 117 1.00e-32 117
MS.gene86599.t1 AT2G35700 63.750 80 29 0 28 107 40 119 3.09e-31 112
MS.gene86599.t1 AT4G16750 50.000 110 50 1 3 107 5 114 1.34e-30 110
MS.gene86599.t1 AT2G44940 39.080 174 75 3 22 168 89 258 1.73e-30 113
MS.gene86599.t1 AT5G11590 58.333 96 36 1 23 114 37 132 2.22e-30 112
MS.gene86599.t1 AT4G32800 50.467 107 47 1 20 120 6 112 1.39e-29 109
MS.gene86599.t1 AT2G36450 41.711 187 96 5 21 200 3 183 1.43e-29 108
MS.gene86599.t1 AT3G16280 42.391 184 82 5 29 200 57 228 2.83e-29 108
MS.gene86599.t1 AT3G16280 42.391 184 82 5 29 200 75 246 3.01e-29 109
MS.gene86599.t1 AT1G01250 52.830 106 47 1 5 107 14 119 1.68e-28 105
MS.gene86599.t1 AT3G60490 57.317 82 34 1 27 107 64 145 3.96e-25 98.6
MS.gene86599.t1 AT2G25820 60.526 76 30 0 32 107 25 100 5.63e-25 97.4
MS.gene86599.t1 AT5G52020 43.017 179 87 6 29 200 61 231 1.62e-24 96.7
MS.gene86599.t1 AT1G71450 36.095 169 98 3 32 199 23 182 1.10e-23 93.2
MS.gene86599.t1 AT2G47520 46.512 86 43 1 9 91 23 108 2.54e-20 84.0
MS.gene86599.t1 AT1G21910 48.913 92 40 1 33 117 50 141 3.24e-20 85.1
MS.gene86599.t1 AT1G33760 53.933 89 41 0 33 121 20 108 3.45e-20 84.0
MS.gene86599.t1 AT1G77200 58.442 77 32 0 31 107 41 117 9.58e-20 84.3
MS.gene86599.t1 AT1G46768 58.730 63 25 1 28 90 27 88 6.63e-19 79.3
MS.gene86599.t1 AT1G46768 58.730 63 25 1 28 90 27 88 7.16e-19 79.7
MS.gene86599.t1 AT1G46768 58.730 63 25 1 28 90 27 88 7.16e-19 79.7
MS.gene86599.t1 AT4G13620 55.714 70 29 1 23 90 220 289 9.85e-19 83.2
MS.gene86599.t1 AT1G22190 54.795 73 31 1 18 90 70 140 5.90e-18 79.7
MS.gene86599.t1 AT4G39780 50.000 78 37 1 11 88 73 148 6.39e-18 79.7
MS.gene86599.t1 AT3G16770 55.556 72 28 1 19 90 69 136 7.04e-18 79.3
MS.gene86599.t1 AT2G22200 50.667 75 35 1 32 104 70 144 8.02e-18 79.3
MS.gene86599.t1 AT4G06746 44.828 87 43 1 8 94 16 97 8.36e-18 77.0
MS.gene86599.t1 AT5G65130 53.247 77 34 1 18 92 96 172 1.77e-17 78.6
MS.gene86599.t1 AT3G50260 39.286 112 56 3 25 136 13 112 1.90e-17 75.9
MS.gene86599.t1 AT5G65130 53.247 77 34 1 18 92 94 170 1.91e-17 78.6
MS.gene86599.t1 AT1G12630 39.227 181 98 4 29 200 15 192 2.03e-17 77.0
MS.gene86599.t1 AT1G74930 41.667 96 56 0 23 118 11 106 2.45e-17 76.6
MS.gene86599.t1 AT5G21960 47.619 84 44 0 31 114 5 88 2.84e-17 77.0
MS.gene86599.t1 AT2G23340 46.591 88 41 1 33 114 28 115 3.46e-17 75.9
MS.gene86599.t1 AT4G36900 56.667 60 26 0 29 88 26 85 5.40e-17 75.9
MS.gene86599.t1 AT5G67190 57.143 56 24 0 33 88 21 76 1.54e-16 74.3
MS.gene86599.t1 AT2G33710 49.367 79 35 1 28 101 65 143 1.56e-16 75.1
MS.gene86599.t1 AT2G33710 49.367 79 35 1 28 101 65 143 1.79e-16 75.1
MS.gene86599.t1 AT1G78080 59.322 59 24 0 32 90 151 209 1.88e-16 76.6
MS.gene86599.t1 AT3G11020 56.061 66 29 0 27 92 72 137 6.83e-16 75.1
MS.gene86599.t1 AT4G28140 55.932 59 26 0 32 90 142 200 7.14e-16 74.3
MS.gene86599.t1 AT1G19210 36.522 115 73 0 33 147 12 126 7.42e-16 72.8
MS.gene86599.t1 AT1G36060 61.404 57 22 0 32 88 142 198 8.05e-16 74.7
MS.gene86599.t1 AT3G57600 52.778 72 34 0 17 88 12 83 1.08e-15 73.9
MS.gene86599.t1 AT2G20880 39.450 109 61 1 32 140 186 289 1.11e-15 74.3
MS.gene86599.t1 AT4G27950 59.649 57 23 0 33 89 118 174 1.62e-15 73.9
MS.gene86599.t1 AT5G13330 54.688 64 27 1 29 92 37 98 1.92e-15 72.0
MS.gene86599.t1 AT3G15210 60.714 56 22 0 33 88 25 80 2.35e-15 72.0
MS.gene86599.t1 AT1G03800 52.941 68 29 1 21 88 44 108 3.35e-15 72.0
MS.gene86599.t1 AT5G61890 54.688 64 27 1 29 92 88 149 3.52e-15 72.0
MS.gene86599.t1 AT5G61600 60.656 61 21 2 29 88 86 144 5.91e-15 71.2
MS.gene86599.t1 AT5G64750 35.652 115 65 3 43 154 195 303 8.28e-15 72.4
MS.gene86599.t1 AT5G47230 52.778 72 33 1 18 88 141 212 8.39e-15 71.6
MS.gene86599.t1 AT1G71520 33.803 142 71 5 27 162 8 132 9.04e-15 68.6
MS.gene86599.t1 AT5G07580 49.367 79 37 2 27 104 106 182 9.10e-15 70.1
MS.gene86599.t1 AT5G44210 58.929 56 23 0 33 88 33 88 1.00e-14 69.7
MS.gene86599.t1 AT3G61630 48.101 79 35 1 33 111 105 177 1.07e-14 71.6
MS.gene86599.t1 AT1G15360 58.929 56 23 0 33 88 7 62 1.18e-14 69.7
MS.gene86599.t1 AT1G15360 58.929 56 23 0 33 88 7 62 1.18e-14 69.7
MS.gene86599.t1 AT1G22810 39.785 93 41 2 33 117 14 99 1.39e-14 68.2
MS.gene86599.t1 AT4G11140 57.143 56 24 0 33 88 87 142 1.43e-14 70.9
MS.gene86599.t1 AT5G05410 57.627 59 25 0 33 91 79 137 1.43e-14 70.9
MS.gene86599.t1 AT1G75490 48.611 72 37 0 32 103 41 112 1.51e-14 69.7
MS.gene86599.t1 AT1G43160 37.405 131 70 3 33 163 61 179 1.56e-14 69.3
MS.gene86599.t1 AT5G51190 57.143 63 24 2 27 88 68 128 1.78e-14 69.7
MS.gene86599.t1 AT5G05410 57.627 59 25 0 33 91 79 137 1.94e-14 70.9
MS.gene86599.t1 AT4G31060 42.683 82 43 1 11 88 1 82 2.44e-14 68.6
MS.gene86599.t1 AT1G72360 44.737 76 42 0 13 88 54 129 3.31e-14 69.3
MS.gene86599.t1 AT1G72360 49.206 63 32 0 26 88 18 80 3.36e-14 68.6
MS.gene86599.t1 AT5G25390 55.357 56 25 0 33 88 7 62 4.37e-14 67.8
MS.gene86599.t1 AT5G43410 55.000 60 26 1 30 88 12 71 4.84e-14 66.6
MS.gene86599.t1 AT5G53290 42.045 88 50 1 2 89 95 181 8.18e-14 69.3
MS.gene86599.t1 AT1G72360 49.206 63 32 0 26 88 69 131 9.32e-14 68.2
MS.gene86599.t1 AT3G23230 51.613 62 29 1 33 93 20 81 9.47e-14 65.9
MS.gene86599.t1 AT1G28370 57.143 56 24 0 33 88 20 75 1.15e-13 66.2
MS.gene86599.t1 AT2G46310 55.357 56 25 0 33 88 99 154 1.52e-13 68.2
MS.gene86599.t1 AT5G18450 47.500 80 38 1 9 88 14 89 1.61e-13 68.2
MS.gene86599.t1 AT1G28370 57.143 56 24 0 33 88 58 113 1.88e-13 66.6
MS.gene86599.t1 AT3G20310 53.226 62 29 0 27 88 21 82 2.47e-13 67.0
MS.gene86599.t1 AT4G23750 54.386 57 26 0 33 89 122 178 3.80e-13 67.4
MS.gene86599.t1 AT4G23750 54.386 57 26 0 33 89 122 178 3.80e-13 67.4
MS.gene86599.t1 AT5G25190 58.929 56 23 0 33 88 8 63 5.94e-13 64.7
MS.gene86599.t1 AT1G28360 55.000 60 27 0 33 92 12 71 6.08e-13 64.7
MS.gene86599.t1 AT4G17490 55.556 63 25 2 27 88 133 193 6.95e-13 66.2
MS.gene86599.t1 AT1G77640 45.556 90 43 1 33 116 43 132 9.71e-13 65.1
MS.gene86599.t1 AT1G50640 48.193 83 39 2 7 88 4 83 1.07e-12 64.7
MS.gene86599.t1 AT2G40340 53.571 56 26 0 33 88 14 69 1.53e-12 65.1
MS.gene86599.t1 AT2G40340 53.571 56 26 0 33 88 14 69 1.53e-12 65.1
MS.gene86599.t1 AT2G40340 53.571 56 26 0 33 88 14 69 1.53e-12 65.1
MS.gene86599.t1 AT1G12890 46.154 78 39 1 11 88 2 76 1.60e-12 64.3
MS.gene86599.t1 AT5G19790 53.448 58 27 0 33 90 22 79 1.91e-12 64.7
MS.gene86599.t1 AT5G47220 56.140 57 24 1 33 88 117 173 2.02e-12 64.3
MS.gene86599.t1 AT2G40340 53.571 56 26 0 33 88 72 127 2.37e-12 64.7
MS.gene86599.t1 AT2G40340 53.571 56 26 0 33 88 72 127 2.67e-12 64.7
MS.gene86599.t1 AT2G40340 53.571 56 26 0 33 88 79 134 3.16e-12 64.7
MS.gene86599.t1 AT5G07310 50.685 73 34 1 16 88 77 147 6.38e-12 63.2
MS.gene86599.t1 AT2G40220 64.912 57 20 0 33 89 55 111 8.89e-12 63.2
MS.gene86599.t1 AT4G17500 56.140 57 24 1 33 88 148 204 1.34e-11 62.4
MS.gene86599.t1 AT3G23240 50.000 58 28 1 33 89 82 139 1.67e-11 61.6
MS.gene86599.t1 AT2G44840 54.386 57 25 1 33 88 92 148 1.75e-11 61.6
MS.gene86599.t1 AT5G25390 51.786 56 24 1 33 88 7 59 1.85e-11 60.8
MS.gene86599.t1 AT1G12980 55.357 56 25 0 33 88 57 112 3.81e-11 61.6
MS.gene86599.t1 AT5G61590 58.209 67 25 2 23 88 99 163 3.82e-11 60.1
MS.gene86599.t1 AT1G24590 51.562 64 28 1 33 96 58 118 4.18e-11 61.2
MS.gene86599.t1 AT2G40350 48.214 56 29 0 33 88 74 129 5.64e-11 58.9
MS.gene86599.t1 AT2G40350 48.214 56 29 0 33 88 67 122 6.44e-11 58.9

Find 59 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGAGGAACTTAGATAAA+TGG 0.259157 6.1:+50905482 MS.gene86599:CDS
CAAATCCTAGTCTTCTTATT+CGG 0.304564 6.1:-50905523 None:intergenic
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6.1:+50905858 MS.gene86599:CDS
TTAAGCTTCTTCCTCCCTGC+TGG 0.397058 6.1:-50905427 None:intergenic
CGAATAAGAAGACTAGGATT+TGG 0.406523 6.1:+50905524 MS.gene86599:CDS
GCCTCAGCGGTGGCAGGAAT+AGG 0.415517 6.1:-50905658 None:intergenic
GAAGAGGAACTTAGATAAAT+GGG 0.423648 6.1:+50905483 MS.gene86599:CDS
GTGTGCACGGGCAGCCATCT+CGG 0.428196 6.1:-50905566 None:intergenic
CGTTGCAGCAATTGCATTGA+GGG 0.436008 6.1:+50905591 MS.gene86599:CDS
CTGTCTCAACTTTGCAGACT+CGG 0.436160 6.1:+50905624 MS.gene86599:CDS
TTAGTCATTAAAGTCTTGTC+TGG 0.441603 6.1:-50905727 None:intergenic
AATGTCCCCTACACATAGTA+TGG 0.442156 6.1:+50905885 MS.gene86599:CDS
GGCAGCTGCAGAAGCTGCCG+AGG 0.451466 6.1:+50905696 MS.gene86599:CDS
ATATGTTTACAAGTAACAAC+GGG 0.454775 6.1:+50905371 None:intergenic
TTGCTGCAACGTCGTGTGCA+CGG 0.466937 6.1:-50905579 None:intergenic
TGCTGCAACGTCGTGTGCAC+GGG 0.472831 6.1:-50905578 None:intergenic
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6.1:+50905467 MS.gene86599:CDS
AGTACAAGACTTTCAATATG+AGG 0.490333 6.1:+50905930 MS.gene86599:CDS
CATGCTCCATACTATGTGTA+GGG 0.491173 6.1:-50905891 None:intergenic
ACTCGCCACCCGGTGTATAG+AGG 0.496516 6.1:+50905454 MS.gene86599:CDS
CTGAGGCAAAAGACATTCAA+AGG 0.499259 6.1:+50905674 MS.gene86599:CDS
TGAAGTCGAAGAAGAAGAAG+AGG 0.500617 6.1:+50905822 MS.gene86599:CDS
GCCATATTCCTCCACAACTC+TGG 0.506491 6.1:-50905859 None:intergenic
TAAATGGGTATGTGAAATGA+GGG 0.506863 6.1:+50905498 MS.gene86599:CDS
AATATGAGGAGGTATCACTA+TGG 0.509514 6.1:+50905944 MS.gene86599:CDS
ATAAATGGGTATGTGAAATG+AGG 0.510310 6.1:+50905497 MS.gene86599:CDS
AGCAGGGAGGAAGAAGCTTA+AGG 0.516858 6.1:+50905429 MS.gene86599:CDS
ACGTTGCAGCAATTGCATTG+AGG 0.536298 6.1:+50905590 MS.gene86599:CDS
TCATGCTCCATACTATGTGT+AGG 0.541468 6.1:-50905892 None:intergenic
AAGAAGACTAGGATTTGGCT+AGG 0.549278 6.1:+50905529 MS.gene86599:CDS
GCTTAAGGAGACTCGCCACC+CGG 0.555712 6.1:+50905444 MS.gene86599:CDS
CGAGTCTGCAAAGTTGAGAC+AGG 0.558907 6.1:-50905623 None:intergenic
TTACAAGTAACAACGGGGAG+GGG 0.563550 6.1:+50905377 MS.gene86599:CDS
TGAGGCAAAAGACATTCAAA+GGG 0.575611 6.1:+50905675 MS.gene86599:CDS
TTCCTCACACCTCTATACAC+CGG 0.578151 6.1:-50905463 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6.1:-50905462 None:intergenic
TCCTATTCCTGCCACCGCTG+AGG 0.581983 6.1:+50905657 MS.gene86599:CDS
GGGAACCGAATAAGAAGACT+AGG 0.583565 6.1:+50905518 MS.gene86599:CDS
CTTGTCTGGTCTGAAAGCCT+CGG 0.583680 6.1:-50905713 None:intergenic
TAATGACATTGACACGGTTG+TGG 0.584743 6.1:+50905747 MS.gene86599:CDS
TTTACAAGTAACAACGGGGA+GGG 0.587349 6.1:+50905376 MS.gene86599:CDS
CAAGTAACAACGGGGAGGGG+CGG 0.588787 6.1:+50905380 MS.gene86599:CDS
TCAACTTTGCAGACTCGGTG+TGG 0.601701 6.1:+50905629 MS.gene86599:CDS
TGTGGCTGTTGTCGTTGCAG+TGG 0.604136 6.1:+50905765 MS.gene86599:CDS
ACTTTGCAGACTCGGTGTGG+AGG 0.609381 6.1:+50905632 MS.gene86599:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6.1:+50905848 MS.gene86599:CDS
TGTCGTTGCAGTGGAAGAAG+AGG 0.624573 6.1:+50905774 MS.gene86599:CDS
GATATGTTTACAAGTAACAA+CGG 0.629910 6.1:+50905370 None:intergenic
GTTGCAGCAATTGCATTGAG+GGG 0.634472 6.1:+50905592 MS.gene86599:CDS
AGAAGACTAGGATTTGGCTA+GGG 0.635435 6.1:+50905530 MS.gene86599:CDS
AATGACTAATGACATTGACA+CGG 0.658662 6.1:+50905741 MS.gene86599:CDS
CAAAGTTGAGACAGGCGTAG+CGG 0.672645 6.1:-50905615 None:intergenic
ACAAGACTTTCAATATGAGG+AGG 0.676699 6.1:+50905933 MS.gene86599:CDS
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6.1:+50905851 MS.gene86599:CDS
GTTTACAAGTAACAACGGGG+AGG 0.703815 6.1:+50905375 MS.gene86599:CDS
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6.1:+50905461 MS.gene86599:CDS
ATGCTCCATACTATGTGTAG+GGG 0.710393 6.1:-50905890 None:intergenic
TCACACCTCTATACACCGGG+TGG 0.726886 6.1:-50905459 None:intergenic
TATGTTTACAAGTAACAACG+GGG 0.831032 6.1:+50905372 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AATGACTAATGACATTGACA+CGG + chr6.1:50905741-50905760 MS.gene86599:CDS 30.0%
AGTACAAGACTTTCAATATG+AGG + chr6.1:50905930-50905949 MS.gene86599:CDS 30.0%
ATAAATGGGTATGTGAAATG+AGG + chr6.1:50905497-50905516 MS.gene86599:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6.1:50905483-50905502 MS.gene86599:CDS 30.0%
TAAATGGGTATGTGAAATGA+GGG + chr6.1:50905498-50905517 MS.gene86599:CDS 30.0%
! CAAATCCTAGTCTTCTTATT+CGG - chr6.1:50905526-50905545 None:intergenic 30.0%
! TTAGTCATTAAAGTCTTGTC+TGG - chr6.1:50905730-50905749 None:intergenic 30.0%
ACAAGACTTTCAATATGAGG+AGG + chr6.1:50905933-50905952 MS.gene86599:CDS 35.0%
CGAATAAGAAGACTAGGATT+TGG + chr6.1:50905524-50905543 MS.gene86599:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6.1:50905482-50905501 MS.gene86599:CDS 35.0%
TGAGGCAAAAGACATTCAAA+GGG + chr6.1:50905675-50905694 MS.gene86599:CDS 35.0%
!! AATATGAGGAGGTATCACTA+TGG + chr6.1:50905944-50905963 MS.gene86599:CDS 35.0%
AAGAAGACTAGGATTTGGCT+AGG + chr6.1:50905529-50905548 MS.gene86599:CDS 40.0%
AATGTCCCCTACACATAGTA+TGG + chr6.1:50905885-50905904 MS.gene86599:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + chr6.1:50905530-50905549 MS.gene86599:CDS 40.0%
ATGCTCCATACTATGTGTAG+GGG - chr6.1:50905893-50905912 None:intergenic 40.0%
CATGCTCCATACTATGTGTA+GGG - chr6.1:50905894-50905913 None:intergenic 40.0%
CTGAGGCAAAAGACATTCAA+AGG + chr6.1:50905674-50905693 MS.gene86599:CDS 40.0%
TAATGACATTGACACGGTTG+TGG + chr6.1:50905747-50905766 MS.gene86599:CDS 40.0%
TCATGCTCCATACTATGTGT+AGG - chr6.1:50905895-50905914 None:intergenic 40.0%
TGAAGTCGAAGAAGAAGAAG+AGG + chr6.1:50905822-50905841 MS.gene86599:CDS 40.0%
TGTTGAATATGCCAGAGTTG+TGG + chr6.1:50905848-50905867 MS.gene86599:CDS 40.0%
TTTACAAGTAACAACGGGGA+GGG + chr6.1:50905376-50905395 MS.gene86599:CDS 40.0%
! TTGAATGTCTTTTGCCTCAG+CGG - chr6.1:50905674-50905693 None:intergenic 40.0%
ACGTTGCAGCAATTGCATTG+AGG + chr6.1:50905590-50905609 MS.gene86599:CDS 45.0%
AGTTGCCCAAAAAAACCAGC+AGG + chr6.1:50905412-50905431 MS.gene86599:CDS 45.0%
CGTTGCAGCAATTGCATTGA+GGG + chr6.1:50905591-50905610 MS.gene86599:CDS 45.0%
CTGTCTCAACTTTGCAGACT+CGG + chr6.1:50905624-50905643 MS.gene86599:CDS 45.0%
GGGAACCGAATAAGAAGACT+AGG + chr6.1:50905518-50905537 MS.gene86599:CDS 45.0%
GTTGCAGCAATTGCATTGAG+GGG + chr6.1:50905592-50905611 MS.gene86599:CDS 45.0%
GTTGCCCAAAAAAACCAGCA+GGG + chr6.1:50905413-50905432 MS.gene86599:CDS 45.0%
GTTTACAAGTAACAACGGGG+AGG + chr6.1:50905375-50905394 MS.gene86599:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + chr6.1:50905851-50905870 MS.gene86599:CDS 45.0%
TTACAAGTAACAACGGGGAG+GGG + chr6.1:50905377-50905396 MS.gene86599:CDS 45.0%
TTCCTCACACCTCTATACAC+CGG - chr6.1:50905466-50905485 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + chr6.1:50905467-50905486 MS.gene86599:CDS 45.0%
!!! TCCTCCCTGCTGGTTTTTTT+GGG - chr6.1:50905420-50905439 None:intergenic 45.0%
!!! TGGTTTTTTTGGGCAACTCG+CGG - chr6.1:50905410-50905429 None:intergenic 45.0%
!!! TTCCTCCCTGCTGGTTTTTT+TGG - chr6.1:50905421-50905440 None:intergenic 45.0%
AGCAGGGAGGAAGAAGCTTA+AGG + chr6.1:50905429-50905448 MS.gene86599:CDS 50.0%
CAAAGTTGAGACAGGCGTAG+CGG - chr6.1:50905618-50905637 None:intergenic 50.0%
CGAGTCTGCAAAGTTGAGAC+AGG - chr6.1:50905626-50905645 None:intergenic 50.0%
CTTGTCTGGTCTGAAAGCCT+CGG - chr6.1:50905716-50905735 None:intergenic 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + chr6.1:50905858-50905877 MS.gene86599:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - chr6.1:50905862-50905881 None:intergenic 50.0%
TCCTCACACCTCTATACACC+GGG - chr6.1:50905465-50905484 None:intergenic 50.0%
TGTCGTTGCAGTGGAAGAAG+AGG + chr6.1:50905774-50905793 MS.gene86599:CDS 50.0%
TTAAGCTTCTTCCTCCCTGC+TGG - chr6.1:50905430-50905449 None:intergenic 50.0%
! AATGTCTTTTGCCTCAGCGG+TGG - chr6.1:50905671-50905690 None:intergenic 50.0%
! GACTTTTGCAACAGCCGAGA+TGG + chr6.1:50905552-50905571 MS.gene86599:CDS 50.0%
!! TCAACTTTGCAGACTCGGTG+TGG + chr6.1:50905629-50905648 MS.gene86599:CDS 50.0%
GCCCAAAAAAACCAGCAGGG+AGG + chr6.1:50905416-50905435 MS.gene86599:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - chr6.1:50905462-50905481 None:intergenic 55.0%
TGTGGCTGTTGTCGTTGCAG+TGG + chr6.1:50905765-50905784 MS.gene86599:CDS 55.0%
TTGCTGCAACGTCGTGTGCA+CGG - chr6.1:50905582-50905601 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + chr6.1:50905461-50905480 MS.gene86599:CDS 55.0%
!! ACTTTGCAGACTCGGTGTGG+AGG + chr6.1:50905632-50905651 MS.gene86599:CDS 55.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6.1:50905454-50905473 MS.gene86599:CDS 60.0%
CAAGTAACAACGGGGAGGGG+CGG + chr6.1:50905380-50905399 MS.gene86599:CDS 60.0%
GCTTAAGGAGACTCGCCACC+CGG + chr6.1:50905444-50905463 MS.gene86599:CDS 60.0%
TCCTATTCCTGCCACCGCTG+AGG + chr6.1:50905657-50905676 MS.gene86599:CDS 60.0%
TGCTGCAACGTCGTGTGCAC+GGG - chr6.1:50905581-50905600 None:intergenic 60.0%
! TCTTTTGCCTCAGCGGTGGC+AGG - chr6.1:50905667-50905686 None:intergenic 60.0%
GCCTCAGCGGTGGCAGGAAT+AGG - chr6.1:50905661-50905680 None:intergenic 65.0%
GTGTGCACGGGCAGCCATCT+CGG - chr6.1:50905569-50905588 None:intergenic 65.0%
GGCAGCTGCAGAAGCTGCCG+AGG + chr6.1:50905696-50905715 MS.gene86599:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 50905373 50905975 50905373 ID=MS.gene86599
chr6.1 mRNA 50905373 50905975 50905373 ID=MS.gene86599.t1;Parent=MS.gene86599
chr6.1 exon 50905373 50905975 50905373 ID=MS.gene86599.t1.exon1;Parent=MS.gene86599.t1
chr6.1 CDS 50905373 50905975 50905373 ID=cds.MS.gene86599.t1;Parent=MS.gene86599.t1
Gene Sequence

>MS.gene86599

ATGTTTACAAGTAACAACGGGGAGGGGCGGTTAGCCGCGAGTTGCCCAAAAAAACCAGCAGGGAGGAAGAAGCTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTATGTGAAATGAGGGAACCGAATAAGAAGACTAGGATTTGGCTAGGGACTTTTGCAACAGCCGAGATGGCTGCCCGTGCACACGACGTTGCAGCAATTGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCGGTGTGGAGGCTTCCTATTCCTGCCACCGCTGAGGCAAAAGACATTCAAAGGGCAGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACAAGACTTTAATGACTAATGACATTGACACGGTTGTGGCTGTTGTCGTTGCAGTGGAAGAAGAGGAAGAACTGTTGAATATGTTTTGTGTTGAAGTCGAAGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTATGGAGCATGAGTATGAAGATTTTGAAGTACAAGACTTTCAATATGAGGAGGTATCACTATGGAACTTCTAA

Protein sequence

>MS.gene86599.t1

MFTSNNGEGRLAASCPKKPAGRKKLKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRYACLNFADSVWRLPIPATAEAKDIQRAAAEAAEAFRPDKTLMTNDIDTVVAVVVAVEEEEELLNMFCVEVEEEEEEVLNMPELWRNMALMSPTHSMEHEYEDFEVQDFQYEEVSLWNF