AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79327

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79327.t1 MTR_6g465690 71.491 228 27 3 1 191 1 227 1.17e-102 296
MS.gene79327.t1 MTR_6g466000 56.881 218 40 4 24 194 17 227 4.17e-73 220
MS.gene79327.t1 MTR_6g465450 55.652 230 54 7 3 192 1 222 2.37e-70 214
MS.gene79327.t1 MTR_6g465460 55.497 191 46 4 39 191 29 218 2.57e-65 202
MS.gene79327.t1 MTR_6g465430 55.897 195 47 4 37 192 27 221 1.16e-64 199
MS.gene79327.t1 MTR_6g465420 56.216 185 43 3 39 185 29 213 6.78e-64 198
MS.gene79327.t1 MTR_6g466130 55.450 211 48 5 23 194 25 228 3.04e-59 185
MS.gene79327.t1 MTR_6g465990 54.774 199 56 3 23 194 2 193 6.62e-57 178
MS.gene79327.t1 MTR_6g465510 53.555 211 39 5 36 194 5 208 1.69e-53 170
MS.gene79327.t1 MTR_6g465530 52.475 202 45 5 36 194 5 198 4.65e-53 168
MS.gene79327.t1 MTR_6g465850 39.535 258 56 6 30 194 29 279 5.96e-47 155
MS.gene79327.t1 MTR_6g466020 48.936 188 68 5 23 191 2 180 1.54e-39 133
MS.gene79327.t1 MTR_1g101600 44.878 205 67 5 27 194 5 200 1.07e-36 127
MS.gene79327.t1 MTR_4g102660 33.491 212 79 10 36 194 16 218 1.74e-21 88.2
MS.gene79327.t1 MTR_8g006410 62.500 64 22 1 39 100 42 105 3.16e-21 87.0
MS.gene79327.t1 MTR_5g010930 31.754 211 79 7 39 194 24 224 1.56e-19 83.2
MS.gene79327.t1 MTR_5g010940 30.357 224 103 6 19 194 9 227 3.92e-19 82.0
MS.gene79327.t1 MTR_7g046260 68.750 48 15 0 53 100 67 114 4.68e-19 82.0
MS.gene79327.t1 MTR_5g012910 66.667 48 16 0 53 100 34 81 9.38e-18 77.4
MS.gene79327.t1 MTR_3g110205 66.667 48 16 0 53 100 49 96 1.03e-17 77.4
MS.gene79327.t1 MTR_5g010910 30.180 222 101 7 22 194 6 222 8.49e-17 75.9
MS.gene79327.t1 MTR_4g100650 62.500 48 18 0 53 100 80 127 1.19e-16 75.9
MS.gene79327.t1 MTR_8g102800 56.923 65 27 1 53 117 43 106 2.53e-16 74.7
MS.gene79327.t1 MTR_2g101340 60.417 48 19 0 53 100 47 94 3.49e-16 73.6
MS.gene79327.t1 MTR_8g013860 62.500 48 18 0 53 100 53 100 1.17e-15 72.4
MS.gene79327.t1 MTR_6g088405 62.500 48 18 0 53 100 50 97 1.85e-15 72.0
MS.gene79327.t1 MTR_2g085015 64.000 50 17 1 50 98 51 100 2.20e-14 69.3
MS.gene79327.t1 MTR_4g102670 35.659 129 64 4 48 161 19 143 5.99e-14 67.0
MS.gene79327.t1 MTR_7g117690 58.333 48 20 0 53 100 34 81 9.81e-14 66.2
MS.gene79327.t1 MTR_8g027465 56.250 48 21 0 53 100 45 92 6.23e-13 64.3
MS.gene79327.t1 MTR_1g006660 64.583 48 17 0 53 100 53 100 8.24e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79327.t1 AT4G25470 38.806 201 64 5 41 194 28 216 4.64e-30 110
MS.gene79327.t1 AT5G51990 36.946 203 68 7 41 194 31 222 9.65e-28 104
MS.gene79327.t1 AT4G25480 38.579 197 68 5 42 194 29 216 3.92e-26 100
MS.gene79327.t1 AT1G63030 34.518 197 76 5 35 194 1 181 7.90e-26 98.6
MS.gene79327.t1 AT1G63030 34.518 197 76 5 35 194 1 181 7.90e-26 98.6
MS.gene79327.t1 AT1G12610 34.434 212 82 8 35 194 1 207 1.76e-23 93.2
MS.gene79327.t1 AT4G25490 38.384 198 67 6 42 194 26 213 1.01e-22 91.3
MS.gene79327.t1 AT2G44940 66.667 48 16 0 53 100 106 153 8.86e-18 79.7
MS.gene79327.t1 AT5G11590 52.703 74 31 3 53 125 57 127 1.30e-17 78.2
MS.gene79327.t1 AT4G32800 63.265 49 18 0 53 101 25 73 3.62e-17 76.6
MS.gene79327.t1 AT3G60490 62.500 48 18 0 53 100 77 124 4.81e-17 77.0
MS.gene79327.t1 AT2G35700 66.667 48 16 0 53 100 51 98 6.82e-17 75.5
MS.gene79327.t1 AT5G25810 62.500 48 18 0 53 100 42 89 8.30e-17 75.5
MS.gene79327.t1 AT2G25820 64.583 48 17 0 53 100 32 79 8.77e-17 75.9
MS.gene79327.t1 AT4G16750 62.500 48 18 0 53 100 46 93 4.47e-16 72.8
MS.gene79327.t1 AT2G36450 30.114 176 81 6 50 194 19 183 4.49e-16 73.2
MS.gene79327.t1 AT3G16280 42.857 91 50 1 53 143 67 155 7.68e-16 73.6
MS.gene79327.t1 AT3G16280 42.857 91 50 1 53 143 85 173 1.04e-15 73.2
MS.gene79327.t1 AT1G01250 56.250 48 21 0 53 100 51 98 1.16e-13 66.6
MS.gene79327.t1 AT5G52020 33.735 166 74 5 57 194 74 231 4.08e-12 63.2
MS.gene79327.t1 AT3G57600 56.250 48 21 0 53 100 34 81 6.24e-12 63.2
MS.gene79327.t1 AT4G39780 54.167 48 22 0 53 100 99 146 1.81e-11 62.0
MS.gene79327.t1 AT2G22200 40.789 76 36 1 34 100 49 124 2.28e-11 61.6
MS.gene79327.t1 AT4G13620 46.032 63 30 1 42 100 223 285 2.66e-11 62.0
MS.gene79327.t1 AT3G50260 26.712 146 79 2 53 190 27 152 3.51e-11 59.3
MS.gene79327.t1 AT2G47520 37.363 91 44 2 23 100 13 103 4.31e-11 59.3
MS.gene79327.t1 AT1G21910 38.372 86 26 2 53 111 56 141 5.92e-11 60.1
MS.gene79327.t1 AT4G36900 42.466 73 35 1 35 100 11 83 7.22e-11 59.3
MS.gene79327.t1 AT1G22190 33.333 111 72 1 10 118 44 154 8.15e-11 60.1
MS.gene79327.t1 AT1G36060 40.541 74 44 0 53 126 149 222 8.47e-11 60.1
MS.gene79327.t1 AT1G71450 54.167 48 22 0 53 100 30 77 9.53e-11 58.5

Find 60 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATCTTGGTCTTCTTCTT+TGG 0.187928 6.3:-55886008 None:intergenic
TTCCTCCCTGCACGCTTCTT+TGG 0.246493 6.3:-55885954 None:intergenic
AATGAACTCTCGGAGGAATT+TGG 0.252896 6.3:-55885864 None:intergenic
CAGGGAGGAACTTAGATAAA+TGG 0.260823 6.3:+55885967 MS.gene79327:CDS
TGCGAATTCAGAGGGTTATC+AGG 0.262375 6.3:+55885887 MS.gene79327:CDS
TCTTGAAAATCTTGAAAATC+TGG 0.263727 6.3:-55886933 None:intergenic
GCCAGAGTTGTTCAGGAATA+TGG 0.272190 6.3:+55886845 MS.gene79327:CDS
CGGAGGAATTTGGAGAAAAC+TGG 0.364039 6.3:-55885854 None:intergenic
TGAACATGCCAGAGTTGTTC+AGG 0.385595 6.3:+55886838 MS.gene79327:CDS
ATGTGCCCGGGCTGCCATCT+CGG 0.400727 6.3:-55886051 None:intergenic
AACTGCCGAGATGGCAGCCC+GGG 0.407631 6.3:+55886046 MS.gene79327:CDS
CAAAGAAGAAGACCAAGATT+TGG 0.438941 6.3:+55886009 MS.gene79327:CDS
ATGTCTCCTACACATAGCTT+TGG 0.439535 6.3:+55886873 MS.gene79327:CDS
GGCACATGATGTTGCTTCAA+TGG 0.452514 6.3:+55886067 MS.gene79327:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6.3:+55886874 MS.gene79327:CDS
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6.3:+55886794 MS.gene79327:CDS
AAAAGTGCCTAGCCAAATCT+TGG 0.478758 6.3:-55886021 None:intergenic
CGGGCTGCCATCTCGGCAGT+TGG 0.488790 6.3:-55886044 None:intergenic
TTGAAGCAACATCATGTGCC+CGG 0.494126 6.3:-55886064 None:intergenic
AGGGAGGAACTTAGATAAAT+GGG 0.496663 6.3:+55885968 MS.gene79327:CDS
AGCGGCTGCACAGGCCGCAG+AGG 0.499896 6.3:+55886704 MS.gene79327:CDS
TGTTGCTTCAATGGCATTGA+GGG 0.504263 6.3:+55886076 MS.gene79327:CDS
GGCCGCAGAGGCTTTCAGAC+CGG 0.508268 6.3:+55886716 MS.gene79327:CDS
AAGATGAAGAGGTATCACTA+TGG 0.512792 6.3:+55886952 MS.gene79327:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6.3:+55886800 MS.gene79327:CDS
GCCATATTCCTGAACAACTC+TGG 0.516505 6.3:-55886846 None:intergenic
ACGACTCCAAAGAAGCGTGC+AGG 0.519720 6.3:+55885948 MS.gene79327:CDS
CAACTGCCGAGATGGCAGCC+CGG 0.522483 6.3:+55886045 MS.gene79327:CDS
TTAGTCATCGAAGTCTTGTC+CGG 0.525341 6.3:-55886735 None:intergenic
GCGAATTCAGAGGGTTATCA+GGG 0.528730 6.3:+55885888 MS.gene79327:CDS
GGCTATTGCCACCTCTTCTA+CGG 0.529658 6.3:+55886770 MS.gene79327:CDS
TGAATTCGCAAATGAACTCT+CGG 0.538349 6.3:-55885874 None:intergenic
ATGTTGCTTCAATGGCATTG+AGG 0.540568 6.3:+55886075 MS.gene79327:CDS
TAAATGGGTGTGTGAAATGA+GGG 0.541686 6.3:+55885983 MS.gene79327:CDS
TTGTATGGAAGAGGAAGAAG+AGG 0.552825 6.3:+55886809 MS.gene79327:CDS
AGTTCATTTGCGAATTCAGA+GGG 0.562822 6.3:+55885879 MS.gene79327:CDS
CGACTCCAAAGAAGCGTGCA+GGG 0.565965 6.3:+55885949 MS.gene79327:CDS
CTTCTACGGAGGAGCAGAGT+AGG 0.569439 6.3:+55886784 MS.gene79327:CDS
AGCTAACCTCACTTCCTCGT+TGG 0.571780 6.3:-55885922 None:intergenic
TGAAGCAACATCATGTGCCC+GGG 0.576327 6.3:-55886063 None:intergenic
AAGAAGACCAAGATTTGGCT+AGG 0.582513 6.3:+55886014 MS.gene79327:CDS
ATAAATGGGTGTGTGAAATG+AGG 0.586819 6.3:+55885982 MS.gene79327:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6.3:+55885878 MS.gene79327:CDS
TCATACCCAAAGCTATGTGT+AGG 0.603291 6.3:-55886879 None:intergenic
CTGCTCCTCCGTAGAAGAGG+TGG 0.604805 6.3:-55886778 None:intergenic
ACTCTGCTCCTCCGTAGAAG+AGG 0.607637 6.3:-55886781 None:intergenic
CAATTTCCAACGAGGAAGTG+AGG 0.611060 6.3:+55885916 MS.gene79327:CDS
TATTGCCACCTCTTCTACGG+AGG 0.628091 6.3:+55886773 MS.gene79327:CDS
GAATTTGGAGAAAACTGGTG+TGG 0.636372 6.3:-55885849 None:intergenic
TGTATGGAAGAGGAAGAAGA+GGG 0.637572 6.3:+55886810 MS.gene79327:CDS
CAAAGTTGAGACAGGCGTAG+TGG 0.644365 6.3:-55886100 None:intergenic
TATGGAAGAGGAAGAAGAGG+GGG 0.662829 6.3:+55886812 MS.gene79327:CDS
CGAATTCAGAGGGTTATCAG+GGG 0.668411 6.3:+55885889 MS.gene79327:CDS
GTCCGGTCTGAAAGCCTCTG+CGG 0.672100 6.3:-55886718 None:intergenic
GTTGCTTCAATGGCATTGAG+GGG 0.685956 6.3:+55886077 MS.gene79327:CDS
GATGACTAATGACATTGACA+CGG 0.709180 6.3:+55886749 MS.gene79327:CDS
ATTCGCAAATGAACTCTCGG+AGG 0.727426 6.3:-55885871 None:intergenic
GTATGGAAGAGGAAGAAGAG+GGG 0.730904 6.3:+55886811 MS.gene79327:CDS
CTCCAAAGAAGCGTGCAGGG+AGG 0.747670 6.3:+55885952 MS.gene79327:CDS
GGGGATGTCAATTTCCAACG+AGG 0.782366 6.3:+55885908 MS.gene79327:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAAAAATCTTTGTATT+TGG + chr6.3:55886631-55886650 MS.gene79327:intron 15.0%
!! GTCAAATATATATTCATAAT+TGG - chr6.3:55886524-55886543 None:intergenic 15.0%
!! TGTTTAATCTCTATAAAATT+AGG - chr6.3:55886556-55886575 None:intergenic 15.0%
!!! CAAATACAAAGATTTTTTTT+AGG - chr6.3:55886633-55886652 None:intergenic 15.0%
!!! TCAATGAAAATACAAATTTT+GGG - chr6.3:55886218-55886237 None:intergenic 15.0%
!!! TTCAATGAAAATACAAATTT+TGG - chr6.3:55886219-55886238 None:intergenic 15.0%
!! TTATCAATAGTCAAACAAAA+TGG + chr6.3:55886429-55886448 MS.gene79327:intron 20.0%
!!! CAATGAAAATACAAATTTTG+GGG - chr6.3:55886217-55886236 None:intergenic 20.0%
!!! CTACCTCAATAATATATTTT+TGG + chr6.3:55886264-55886283 MS.gene79327:intron 20.0%
! TCTTGAAAATCTTGAAAATC+TGG - chr6.3:55886936-55886955 None:intergenic 25.0%
! TGCAAAAGATATACAAAAAG+CGG + chr6.3:55886686-55886705 MS.gene79327:intron 25.0%
! TGGCCAAAAATATATTATTG+AGG - chr6.3:55886270-55886289 None:intergenic 25.0%
!! TTTTTGTATATCTTTTGCAG+CGG - chr6.3:55886685-55886704 None:intergenic 25.0%
CTCTATAAAATTAGGCTTCA+CGG - chr6.3:55886548-55886567 None:intergenic 30.0%
TATTATTGAGGTAGCTAACT+AGG - chr6.3:55886258-55886277 None:intergenic 30.0%
! TTTGCGAATAAACTTGTTTG+AGG - chr6.3:55886293-55886312 None:intergenic 30.0%
!! TCAAGATTTTCAAGATGAAG+AGG + chr6.3:55886941-55886960 MS.gene79327:CDS 30.0%
AGGGAGGAACTTAGATAAAT+GGG + chr6.3:55885968-55885987 MS.gene79327:CDS 35.0%
AGTCAAACAAAATGGACGAT+AGG + chr6.3:55886437-55886456 MS.gene79327:intron 35.0%
AGTTCATTTGCGAATTCAGA+GGG + chr6.3:55885879-55885898 MS.gene79327:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6.3:55885982-55886001 MS.gene79327:CDS 35.0%
CAAAGAAGAAGACCAAGATT+TGG + chr6.3:55886009-55886028 MS.gene79327:CDS 35.0%
GATGACTAATGACATTGACA+CGG + chr6.3:55886749-55886768 MS.gene79327:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6.3:55885983-55886002 MS.gene79327:CDS 35.0%
TACTCTCTCTATAGTTGTTG+CGG - chr6.3:55886393-55886412 None:intergenic 35.0%
TGAATTCGCAAATGAACTCT+CGG - chr6.3:55885877-55885896 None:intergenic 35.0%
! CAAATCTTGGTCTTCTTCTT+TGG - chr6.3:55886011-55886030 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6.3:55886952-55886971 MS.gene79327:CDS 35.0%
!!! AAGCTAGAGTCATTTTTACG+AGG - chr6.3:55886660-55886679 None:intergenic 35.0%
!!! AGCTAGAGTCATTTTTACGA+GGG - chr6.3:55886659-55886678 None:intergenic 35.0%
AAGAAGACCAAGATTTGGCT+AGG + chr6.3:55886014-55886033 MS.gene79327:CDS 40.0%
AATGAACTCTCGGAGGAATT+TGG - chr6.3:55885867-55885886 None:intergenic 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6.3:55886873-55886892 MS.gene79327:CDS 40.0%
CAGGGAGGAACTTAGATAAA+TGG + chr6.3:55885967-55885986 MS.gene79327:CDS 40.0%
GAATTTGGAGAAAACTGGTG+TGG - chr6.3:55885852-55885871 None:intergenic 40.0%
GAGTTCATTTGCGAATTCAG+AGG + chr6.3:55885878-55885897 MS.gene79327:CDS 40.0%
TCATACCCAAAGCTATGTGT+AGG - chr6.3:55886882-55886901 None:intergenic 40.0%
TGTATGGAAGAGGAAGAAGA+GGG + chr6.3:55886810-55886829 MS.gene79327:CDS 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6.3:55886874-55886893 MS.gene79327:CDS 40.0%
TTGTATGGAAGAGGAAGAAG+AGG + chr6.3:55886809-55886828 MS.gene79327:CDS 40.0%
! ATGTTGCTTCAATGGCATTG+AGG + chr6.3:55886075-55886094 MS.gene79327:CDS 40.0%
! GCGAATAAACTTGTTTGAGG+TGG - chr6.3:55886290-55886309 None:intergenic 40.0%
! TGTTGCTTCAATGGCATTGA+GGG + chr6.3:55886076-55886095 MS.gene79327:CDS 40.0%
! TTAGTCATCGAAGTCTTGTC+CGG - chr6.3:55886738-55886757 None:intergenic 40.0%
!! AAAAGTGCCTAGCCAAATCT+TGG - chr6.3:55886024-55886043 None:intergenic 40.0%
!!! CTAGAGTCATTTTTACGAGG+GGG - chr6.3:55886657-55886676 None:intergenic 40.0%
!!! GCTAGAGTCATTTTTACGAG+GGG - chr6.3:55886658-55886677 None:intergenic 40.0%
ACCACTCAGGCAAAAGATCA+GGG + chr6.3:55886155-55886174 MS.gene79327:intron 45.0%
AGAGTCTGCAAAGTTGAGAC+AGG - chr6.3:55886111-55886130 None:intergenic 45.0%
ATTCGCAAATGAACTCTCGG+AGG - chr6.3:55885874-55885893 None:intergenic 45.0%
CAATTTCCAACGAGGAAGTG+AGG + chr6.3:55885916-55885935 MS.gene79327:CDS 45.0%
CGAATTCAGAGGGTTATCAG+GGG + chr6.3:55885889-55885908 MS.gene79327:CDS 45.0%
CGGAGGAATTTGGAGAAAAC+TGG - chr6.3:55885857-55885876 None:intergenic 45.0%
CTCTATAGTTGTTGCGGAGA+CGG - chr6.3:55886387-55886406 None:intergenic 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6.3:55886800-55886819 MS.gene79327:CDS 45.0%
GCCAGAGTTGTTCAGGAATA+TGG + chr6.3:55886845-55886864 MS.gene79327:CDS 45.0%
GCCATATTCCTGAACAACTC+TGG - chr6.3:55886849-55886868 None:intergenic 45.0%
GCGAATTCAGAGGGTTATCA+GGG + chr6.3:55885888-55885907 MS.gene79327:CDS 45.0%
GTATGGAAGAGGAAGAAGAG+GGG + chr6.3:55886811-55886830 MS.gene79327:CDS 45.0%
TATACAAAAAGCGGCTGCAC+AGG + chr6.3:55886695-55886714 MS.gene79327:CDS 45.0%
TATGGAAGAGGAAGAAGAGG+GGG + chr6.3:55886812-55886831 MS.gene79327:CDS 45.0%
TGAACATGCCAGAGTTGTTC+AGG + chr6.3:55886838-55886857 MS.gene79327:CDS 45.0%
TGCGAATTCAGAGGGTTATC+AGG + chr6.3:55885887-55885906 MS.gene79327:CDS 45.0%
TTGAAGCAACATCATGTGCC+CGG - chr6.3:55886067-55886086 None:intergenic 45.0%
! GGCACATGATGTTGCTTCAA+TGG + chr6.3:55886067-55886086 MS.gene79327:CDS 45.0%
! GTTGCTTCAATGGCATTGAG+GGG + chr6.3:55886077-55886096 MS.gene79327:CDS 45.0%
AGCTAACCTCACTTCCTCGT+TGG - chr6.3:55885925-55885944 None:intergenic 50.0%
CAAAGTTGAGACAGGCGTAG+TGG - chr6.3:55886103-55886122 None:intergenic 50.0%
CACCACTCAGGCAAAAGATC+AGG + chr6.3:55886154-55886173 MS.gene79327:intron 50.0%
CCACTCAGGCAAAAGATCAG+GGG + chr6.3:55886156-55886175 MS.gene79327:intron 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6.3:55886794-55886813 MS.gene79327:CDS 50.0%
GGCTATTGCCACCTCTTCTA+CGG + chr6.3:55886770-55886789 MS.gene79327:CDS 50.0%
GGGGATGTCAATTTCCAACG+AGG + chr6.3:55885908-55885927 MS.gene79327:CDS 50.0%
TATTGCCACCTCTTCTACGG+AGG + chr6.3:55886773-55886792 MS.gene79327:CDS 50.0%
TCAACTTTGCAGACTCTGCG+TGG + chr6.3:55886114-55886133 MS.gene79327:intron 50.0%
TGAAGCAACATCATGTGCCC+GGG - chr6.3:55886066-55886085 None:intergenic 50.0%
! CACTTTTCCAACTGCCGAGA+TGG + chr6.3:55886037-55886056 MS.gene79327:CDS 50.0%
! CTGATCTTTTGCCTGAGTGG+TGG - chr6.3:55886156-55886175 None:intergenic 50.0%
ACTCTGCTCCTCCGTAGAAG+AGG - chr6.3:55886784-55886803 None:intergenic 55.0%
ACTTTGCAGACTCTGCGTGG+CGG + chr6.3:55886117-55886136 MS.gene79327:intron 55.0%
AGATCAGGGGCGAATGCTTG+TGG + chr6.3:55886169-55886188 MS.gene79327:intron 55.0%
AGGGGCGAATGCTTGTGGAA+GGG + chr6.3:55886174-55886193 MS.gene79327:intron 55.0%
CCTGAGTGGTGGCAGGTATA+GGG - chr6.3:55886145-55886164 None:intergenic 55.0%
CGAATGCTTGTGGAAGGGTG+GGG + chr6.3:55886179-55886198 MS.gene79327:intron 55.0%
CTTCTACGGAGGAGCAGAGT+AGG + chr6.3:55886784-55886803 MS.gene79327:CDS 55.0%
GCGAATGCTTGTGGAAGGGT+GGG + chr6.3:55886178-55886197 MS.gene79327:intron 55.0%
TTCCTCCCTGCACGCTTCTT+TGG - chr6.3:55885957-55885976 None:intergenic 55.0%
! ACGACTCCAAAGAAGCGTGC+AGG + chr6.3:55885948-55885967 MS.gene79327:CDS 55.0%
! CCCCTGATCTTTTGCCTGAG+TGG - chr6.3:55886159-55886178 None:intergenic 55.0%
! CGACTCCAAAGAAGCGTGCA+GGG + chr6.3:55885949-55885968 MS.gene79327:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6.3:55886152-55886171 None:intergenic 55.0%
CAGGGGCGAATGCTTGTGGA+AGG + chr6.3:55886173-55886192 MS.gene79327:intron 60.0%
CCCTATACCTGCCACCACTC+AGG + chr6.3:55886142-55886161 MS.gene79327:intron 60.0%
CTGCTCCTCCGTAGAAGAGG+TGG - chr6.3:55886781-55886800 None:intergenic 60.0%
GCCTGAGTGGTGGCAGGTAT+AGG - chr6.3:55886146-55886165 None:intergenic 60.0%
GGCGAATGCTTGTGGAAGGG+TGG + chr6.3:55886177-55886196 MS.gene79327:intron 60.0%
GTCCGGTCTGAAAGCCTCTG+CGG - chr6.3:55886721-55886740 None:intergenic 60.0%
GTGGAAGGGTGGGGTAGCTT+TGG + chr6.3:55886188-55886207 MS.gene79327:intron 60.0%
! CTCCAAAGAAGCGTGCAGGG+AGG + chr6.3:55885952-55885971 MS.gene79327:CDS 60.0%
AACTGCCGAGATGGCAGCCC+GGG + chr6.3:55886046-55886065 MS.gene79327:CDS 65.0%
ATGTGCCCGGGCTGCCATCT+CGG - chr6.3:55886054-55886073 None:intergenic 65.0%
CAACTGCCGAGATGGCAGCC+CGG + chr6.3:55886045-55886064 MS.gene79327:CDS 65.0%
GGCCGCAGAGGCTTTCAGAC+CGG + chr6.3:55886716-55886735 MS.gene79327:CDS 65.0%
CGGGCTGCCATCTCGGCAGT+TGG - chr6.3:55886047-55886066 None:intergenic 70.0%
AGCGGCTGCACAGGCCGCAG+AGG + chr6.3:55886704-55886723 MS.gene79327:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 55885816 55886983 55885816 ID=MS.gene79327
chr6.3 mRNA 55885816 55886983 55885816 ID=MS.gene79327.t1;Parent=MS.gene79327
chr6.3 exon 55885816 55886110 55885816 ID=MS.gene79327.t1.exon1;Parent=MS.gene79327.t1
chr6.3 CDS 55885816 55886110 55885816 ID=cds.MS.gene79327.t1;Parent=MS.gene79327.t1
chr6.3 exon 55886694 55886983 55886694 ID=MS.gene79327.t1.exon2;Parent=MS.gene79327.t1
chr6.3 CDS 55886694 55886983 55886694 ID=cds.MS.gene79327.t1;Parent=MS.gene79327.t1
Gene Sequence

>MS.gene79327

ATGGATGTGTTAACAACTAACAACTCTTCTTATCCACACCAGTTTTCTCCAAATTCCTCCGAGAGTTCATTTGCGAATTCAGAGGGTTATCAGGGGATGTCAATTTCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCAGGGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCAAAGAAGAAGACCAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCAGCCCGGGCACATGATGTTGCTTCAATGGCATTGAGGGGCCACTACGCCTGTCTCAACTTTGCAGACTCTGCGTGGCGGCTCCCTATACCTGCCACCACTCAGGCAAAAGATCAGGGGCGAATGCTTGTGGAAGGGTGGGGTAGCTTTGGCTACCCCAAAATTTGTATTTTCATTGAATGATTAAGTGTATTATCCTAGTTAGCTACCTCAATAATATATTTTTGGCCACCTCAAACAAGTTTATTCGCAAAATATTAGCACAAATAAAAATATTAACAAACTAATATTTGATTAATAAACATATTTTCTTATTTTGACATTTCCGTCTCCGCAACAACTATAGAGAGAGTATTTTTAGCAATCAAAATTATCAATAGTCAAACAAAATGGACGATAGGTTAATACAAATAGTTTATTTATTTACATCGAAAAAGAAATTGTTAGTCTATTTTCAAATATCCAATTATGAATATATATTTGACTCCGTGAAGCCTAATTTTATAGAGATTAAACATATTTAACACTTAAATTTAATATATAACGTTAAAATAAAATTAATTTTTCTTTGCCTAAAAAAAATCTTTGTATTTGGCCCCCTCGTAAAAATGACTCTAGCTTCGCCGCTGCAAAAGATATACAAAAAGCGGCTGCACAGGCCGCAGAGGCTTTCAGACCGGACAAGACTTCGATGACTAATGACATTGACACGGCTATTGCCACCTCTTCTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAAGAGGGGGCGATGAACATGCCAGAGTTGTTCAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATGATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA
Protein sequence

>MS.gene79327.t1

MDVLTTNNSSYPHQFSPNSSESSFANSEGYQGMSISNEEVRLAATTPKKRAGRNLDKWVCEMREPKKKTKIWLGTFPTAEMAARAHDVASMALRGHYAYIQKAAAQAAEAFRPDKTSMTNDIDTAIATSSTEEQSRTCMEEEEEGAMNMPELFRNMALMSPTHSFGYDEYEDIHVQDFPDFQDFQDEEVSLWNY