AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86610.t1 MTR_6g465850 92.000 250 20 0 1 250 32 281 1.12e-152 426
MS.gene86610.t1 MTR_6g466130 67.200 250 28 2 1 250 35 230 8.48e-100 290
MS.gene86610.t1 MTR_6g466000 54.618 249 65 4 1 248 26 227 8.76e-84 249
MS.gene86610.t1 MTR_6g465690 56.800 250 45 5 1 243 32 225 1.32e-78 238
MS.gene86610.t1 MTR_6g465460 52.521 238 54 4 7 242 29 209 7.59e-75 228
MS.gene86610.t1 MTR_6g465450 53.689 244 56 4 1 242 23 211 8.94e-74 225
MS.gene86610.t1 MTR_6g465420 51.240 242 62 4 2 242 24 210 3.49e-72 221
MS.gene86610.t1 MTR_6g465430 53.086 243 56 4 2 242 24 210 3.85e-72 221
MS.gene86610.t1 MTR_6g465510 50.958 261 61 3 1 248 2 208 3.85e-68 209
MS.gene86610.t1 MTR_6g465530 75.397 126 31 0 2 127 3 128 1.37e-64 200
MS.gene86610.t1 MTR_6g465530 59.231 130 48 2 123 248 70 198 3.21e-35 125
MS.gene86610.t1 MTR_1g101600 47.773 247 72 5 4 250 13 202 2.22e-61 192
MS.gene86610.t1 MTR_6g465990 47.390 249 63 5 1 248 12 193 1.80e-59 187
MS.gene86610.t1 MTR_6g466020 76.768 99 23 0 4 102 15 113 1.78e-49 160
MS.gene86610.t1 MTR_6g466020 50.806 124 37 3 123 245 80 180 1.13e-22 91.7
MS.gene86610.t1 MTR_5g010930 62.931 116 37 1 7 116 24 139 2.09e-45 152
MS.gene86610.t1 MTR_5g010940 61.345 119 40 1 4 116 26 144 1.71e-44 149
MS.gene86610.t1 MTR_5g010910 61.607 112 37 1 11 116 28 139 8.98e-43 145
MS.gene86610.t1 MTR_4g102660 69.159 107 30 2 4 107 16 122 5.76e-42 143
MS.gene86610.t1 MTR_3g110205 60.000 95 38 0 27 121 38 132 4.02e-34 121
MS.gene86610.t1 MTR_7g046260 60.417 96 31 1 18 106 40 135 1.51e-32 119
MS.gene86610.t1 MTR_7g117690 59.341 91 31 1 16 106 18 102 2.23e-32 116
MS.gene86610.t1 MTR_8g006410 67.949 78 25 0 29 106 49 126 4.57e-32 117
MS.gene86610.t1 MTR_5g012910 64.557 79 28 0 28 106 24 102 2.77e-31 114
MS.gene86610.t1 MTR_2g101340 57.000 100 37 2 13 106 16 115 2.44e-30 112
MS.gene86610.t1 MTR_2g085015 60.000 90 34 2 26 113 41 130 2.63e-30 113
MS.gene86610.t1 MTR_8g102800 60.000 85 34 0 22 106 27 111 4.66e-30 112
MS.gene86610.t1 MTR_8g027465 53.000 100 41 2 10 106 20 116 1.36e-29 109
MS.gene86610.t1 MTR_6g088405 62.821 78 29 0 29 106 41 118 1.68e-29 110
MS.gene86610.t1 MTR_8g013860 63.291 79 29 0 28 106 43 121 6.96e-29 108
MS.gene86610.t1 MTR_4g102670 62.025 79 29 1 28 106 11 88 1.41e-28 107
MS.gene86610.t1 MTR_4g100650 62.821 78 29 0 29 106 71 148 9.53e-28 107
MS.gene86610.t1 MTR_6g088425 51.754 114 45 1 10 113 17 130 7.78e-25 99.0
MS.gene86610.t1 MTR_1g006660 60.674 89 31 1 22 106 33 121 3.68e-23 95.1
MS.gene86610.t1 MTR_4g035430 48.454 97 45 1 17 113 22 113 1.44e-22 92.4
MS.gene86610.t1 MTR_1g101550 62.667 75 27 1 32 106 57 130 1.38e-18 82.0
MS.gene86610.t1 MTR_1g014780 42.105 95 48 1 31 118 37 131 7.50e-18 80.1
MS.gene86610.t1 MTR_5g008590 54.651 86 39 0 32 117 11 96 1.08e-17 78.6
MS.gene86610.t1 MTR_2g435590 47.253 91 44 2 6 95 73 160 5.51e-17 78.2
MS.gene86610.t1 MTR_5g083340 60.345 58 23 0 32 89 85 142 6.94e-17 79.7
MS.gene86610.t1 MTR_5g008550 41.667 108 61 1 32 137 21 128 1.03e-16 76.3
MS.gene86610.t1 MTR_7g021010 44.828 87 47 1 25 110 4 90 1.39e-16 74.3
MS.gene86610.t1 MTR_5g008470 44.048 84 47 0 34 117 77 160 1.78e-16 75.5
MS.gene86610.t1 MTR_7g020980 56.452 62 27 0 28 89 47 108 1.87e-16 75.1
MS.gene86610.t1 MTR_1g014820 39.000 100 57 1 31 126 26 125 2.44e-16 76.6
MS.gene86610.t1 MTR_1g014860 39.394 99 53 1 27 118 17 115 3.25e-16 75.5
MS.gene86610.t1 MTR_7g021010 43.373 83 47 0 28 110 47 129 4.01e-16 74.3
MS.gene86610.t1 MTR_3g102100 52.459 61 29 0 32 92 45 105 4.97e-16 73.9
MS.gene86610.t1 MTR_3g105510 43.529 85 48 0 32 116 37 121 5.40e-16 75.5
MS.gene86610.t1 MTR_5g009620 48.352 91 31 4 19 101 97 179 9.96e-16 75.5
MS.gene86610.t1 MTR_2g090235 57.627 59 25 0 31 89 217 275 1.37e-15 75.9
MS.gene86610.t1 MTR_1g019110 53.448 58 27 0 32 89 44 101 1.43e-15 72.8
MS.gene86610.t1 MTR_2g105380 45.000 80 44 0 12 91 97 176 1.49e-15 75.5
MS.gene86610.t1 MTR_2g089170 54.839 62 28 0 32 93 65 126 1.57e-15 72.8
MS.gene86610.t1 MTR_2g043050 42.353 85 49 0 31 115 18 102 1.68e-15 73.6
MS.gene86610.t1 MTR_7g092190 60.714 56 22 0 32 87 30 85 1.78e-15 74.7
MS.gene86610.t1 MTR_1g028560 57.895 57 24 0 32 88 115 171 1.97e-15 75.1
MS.gene86610.t1 MTR_1g014800 41.111 90 46 1 31 113 30 119 2.19e-15 73.2
MS.gene86610.t1 MTR_1g087920 44.565 92 49 1 10 99 53 144 2.19e-15 74.3
MS.gene86610.t1 MTR_5g016750 44.872 78 34 1 19 87 3 80 2.20e-15 72.4
MS.gene86610.t1 MTR_3g074130 38.760 129 64 4 13 129 132 257 2.98e-15 74.3
MS.gene86610.t1 MTR_5g083330 50.685 73 36 0 17 89 20 92 3.60e-15 73.9
MS.gene86610.t1 MTR_5g082950 52.703 74 27 2 16 87 54 121 3.76e-15 73.9
MS.gene86610.t1 MTR_1g090170 53.968 63 29 0 27 89 147 209 4.18e-15 73.9
MS.gene86610.t1 MTR_1g090170 49.333 75 31 1 15 89 229 296 7.15e-15 73.6
MS.gene86610.t1 MTR_4g086220 58.929 56 23 0 32 87 96 151 8.71e-15 71.6
MS.gene86610.t1 MTR_8g090350 47.368 76 37 1 31 103 112 187 8.90e-15 72.4
MS.gene86610.t1 MTR_7g028925 50.000 66 30 1 31 96 28 90 1.06e-14 68.2
MS.gene86610.t1 MTR_8g092460 55.932 59 26 0 32 90 145 203 1.10e-14 72.4
MS.gene86610.t1 MTR_5g062700 57.627 59 25 0 31 89 172 230 1.22e-14 72.8
MS.gene86610.t1 MTR_3g105480 43.373 83 47 0 34 116 33 115 1.59e-14 70.9
MS.gene86610.t1 MTR_2g078680 55.556 63 25 1 25 87 27 86 2.06e-14 70.1
MS.gene86610.t1 MTR_4g086160 57.143 56 24 0 32 87 96 151 2.14e-14 70.5
MS.gene86610.t1 MTR_3g053690 56.250 64 25 1 24 87 22 82 2.59e-14 70.5
MS.gene86610.t1 MTR_3g090760 32.738 168 88 5 8 171 98 244 2.96e-14 71.6
MS.gene86610.t1 MTR_4g086165 57.143 56 24 0 32 87 82 137 3.15e-14 69.7
MS.gene86610.t1 MTR_8g022820 48.571 70 36 0 22 91 113 182 3.22e-14 71.6
MS.gene86610.t1 MTR_8g022820 48.571 70 36 0 22 91 114 183 3.36e-14 71.6
MS.gene86610.t1 MTR_8g022820 48.571 70 36 0 22 91 114 183 3.36e-14 71.6
MS.gene86610.t1 MTR_4g086190 57.143 56 24 0 32 87 96 151 3.46e-14 70.1
MS.gene86610.t1 MTR_3g072610 50.562 89 40 2 32 116 25 113 3.56e-14 69.7
MS.gene86610.t1 MTR_3g106290 60.714 56 22 0 32 87 8 63 3.80e-14 69.3
MS.gene86610.t1 MTR_0939s0010 57.143 56 24 0 32 87 65 120 3.88e-14 69.3
MS.gene86610.t1 MTR_1g060910 38.017 121 53 2 16 134 3 103 4.82e-14 68.6
MS.gene86610.t1 MTR_2g015050 52.174 69 32 1 20 87 122 190 6.88e-14 70.1
MS.gene86610.t1 MTR_4g008860 60.714 56 22 0 32 87 8 63 9.99e-14 68.2
MS.gene86610.t1 MTR_2g043030 38.462 91 56 0 31 121 18 108 1.08e-13 68.2
MS.gene86610.t1 MTR_4g114570 50.000 70 28 1 32 101 7 69 1.43e-13 68.2
MS.gene86610.t1 MTR_2g014340 49.296 71 33 1 17 87 7 74 1.50e-13 67.8
MS.gene86610.t1 MTR_4g010640 55.357 56 25 0 32 87 7 62 2.26e-13 67.4
MS.gene86610.t1 MTR_1g074310 57.895 57 23 1 32 87 21 77 2.94e-13 65.9
MS.gene86610.t1 MTR_2g438180 54.839 62 27 1 32 92 14 75 3.13e-13 65.5
MS.gene86610.t1 MTR_2g103700 53.571 56 26 0 32 87 7 62 5.22e-13 65.9
MS.gene86610.t1 MTR_4g078710 53.571 56 26 0 32 87 28 83 5.63e-13 66.6
MS.gene86610.t1 MTR_1g070070 54.386 57 25 1 32 87 21 77 6.73e-13 64.7
MS.gene86610.t1 MTR_1g048610 54.386 57 25 1 32 87 89 145 1.04e-12 65.9
MS.gene86610.t1 MTR_1g074230 56.140 57 24 1 32 87 19 75 1.47e-12 63.5
MS.gene86610.t1 MTR_2g014300 55.357 56 25 0 32 87 15 70 1.51e-12 64.3
MS.gene86610.t1 MTR_2g016730 45.455 77 41 1 12 87 2 78 1.72e-12 66.6
MS.gene86610.t1 MTR_8g099215 45.570 79 37 1 15 87 84 162 2.05e-12 66.2
MS.gene86610.t1 MTR_4g100420 53.968 63 26 2 26 87 153 213 2.24e-12 65.9
MS.gene86610.t1 MTR_1g090290 38.095 105 60 4 1 103 85 186 2.73e-12 64.3
MS.gene86610.t1 MTR_5g075570 48.333 60 31 0 28 87 120 179 2.84e-12 65.5
MS.gene86610.t1 MTR_1g074250 52.459 61 27 1 29 87 16 76 2.86e-12 62.8
MS.gene86610.t1 MTR_4g100450 41.975 81 46 1 8 87 130 210 3.10e-12 65.5
MS.gene86610.t1 MTR_4g088005 43.836 73 40 1 16 87 41 113 5.77e-12 61.6
MS.gene86610.t1 MTR_2g043040 49.123 57 29 0 31 87 18 74 8.10e-12 63.5
MS.gene86610.t1 MTR_5g085070 47.945 73 28 2 25 97 47 109 1.69e-11 63.2
MS.gene86610.t1 MTR_8g069360 53.571 56 26 0 32 87 44 99 1.76e-11 63.9
MS.gene86610.t1 MTR_5g085100 44.578 83 36 2 15 97 32 104 2.15e-11 62.8
MS.gene86610.t1 MTR_5g008540 50.000 56 28 0 34 89 26 81 3.37e-11 58.9
MS.gene86610.t1 MTR_4g054740 44.286 70 38 1 24 92 89 158 4.26e-11 61.6
MS.gene86610.t1 MTR_4g119270 45.833 72 36 1 16 87 40 108 5.17e-11 62.0
MS.gene86610.t1 MTR_2g043020 47.368 57 30 0 31 87 18 74 5.71e-11 60.5
MS.gene86610.t1 MTR_4g054360 46.377 69 36 1 25 92 117 185 6.91e-11 61.2
MS.gene86610.t1 MTR_5g032820 50.000 68 32 1 32 99 46 111 7.43e-11 61.6
MS.gene86610.t1 MTR_5g008790 40.230 87 47 2 32 113 18 104 7.76e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86610.t1 AT5G51990 70.339 118 34 1 1 117 22 139 1.46e-52 170
MS.gene86610.t1 AT4G25470 42.570 249 88 6 2 248 21 216 6.42e-52 168
MS.gene86610.t1 AT1G63030 63.158 114 42 0 5 118 3 116 1.20e-50 164
MS.gene86610.t1 AT1G63030 63.158 114 42 0 5 118 3 116 1.20e-50 164
MS.gene86610.t1 AT1G12610 64.348 115 41 0 4 118 2 116 1.74e-50 164
MS.gene86610.t1 AT4G25480 44.813 241 78 5 10 248 29 216 7.85e-50 163
MS.gene86610.t1 AT4G25490 74.074 108 28 0 10 117 26 133 1.42e-46 154
MS.gene86610.t1 AT5G25810 59.574 94 37 1 21 113 24 117 2.97e-34 123
MS.gene86610.t1 AT5G11590 62.791 86 32 0 28 113 47 132 7.32e-33 120
MS.gene86610.t1 AT2G44940 62.366 93 35 0 21 113 89 181 2.07e-31 117
MS.gene86610.t1 AT4G32800 53.763 93 43 0 21 113 8 100 4.40e-31 115
MS.gene86610.t1 AT2G35700 65.000 80 28 0 27 106 40 119 1.28e-30 112
MS.gene86610.t1 AT3G16280 65.823 79 27 0 28 106 57 135 1.39e-30 114
MS.gene86610.t1 AT3G16280 65.823 79 27 0 28 106 75 153 1.72e-30 114
MS.gene86610.t1 AT4G16750 52.727 110 45 2 3 107 8 115 6.90e-30 110
MS.gene86610.t1 AT1G01250 52.830 106 47 1 4 106 14 119 5.05e-29 108
MS.gene86610.t1 AT3G60490 65.333 75 26 0 32 106 71 145 2.92e-28 108
MS.gene86610.t1 AT2G25820 64.474 76 27 0 31 106 25 100 2.51e-27 105
MS.gene86610.t1 AT2G36450 60.494 81 31 1 20 99 3 83 8.74e-26 100
MS.gene86610.t1 AT1G71450 51.852 81 39 0 32 112 24 104 2.61e-21 88.2
MS.gene86610.t1 AT1G21910 50.000 92 39 1 32 116 50 141 7.77e-21 88.2
MS.gene86610.t1 AT5G52020 43.885 139 56 4 28 151 61 192 1.30e-20 87.8
MS.gene86610.t1 AT1G77200 61.039 77 30 0 30 106 41 117 1.36e-20 87.8
MS.gene86610.t1 AT2G47520 43.820 89 46 1 4 92 26 110 3.40e-19 82.4
MS.gene86610.t1 AT1G33760 50.562 89 44 0 32 120 20 108 1.12e-18 81.3
MS.gene86610.t1 AT1G46768 54.545 66 29 1 27 92 27 91 3.74e-18 79.0
MS.gene86610.t1 AT1G46768 54.545 66 29 1 27 92 27 91 4.27e-18 79.0
MS.gene86610.t1 AT1G46768 54.545 66 29 1 27 92 27 91 4.27e-18 79.0
MS.gene86610.t1 AT1G74930 41.860 86 50 0 32 117 21 106 6.28e-18 79.7
MS.gene86610.t1 AT1G12630 61.429 70 26 1 28 97 15 83 5.94e-17 77.0
MS.gene86610.t1 AT4G06746 50.820 61 30 0 32 92 36 96 6.38e-17 75.9
MS.gene86610.t1 AT1G36060 44.762 105 44 3 31 124 142 243 7.04e-17 79.0
MS.gene86610.t1 AT2G22200 50.667 75 35 1 31 103 70 144 8.53e-17 77.8
MS.gene86610.t1 AT4G13620 59.322 59 24 0 31 89 231 289 1.06e-16 79.0
MS.gene86610.t1 AT4G36900 46.914 81 42 1 7 87 6 85 1.21e-16 76.3
MS.gene86610.t1 AT5G21960 45.238 84 46 0 30 113 5 88 1.32e-16 76.6
MS.gene86610.t1 AT2G23340 55.357 56 25 0 32 87 28 83 3.56e-16 74.3
MS.gene86610.t1 AT1G22190 53.425 73 32 1 17 89 70 140 3.70e-16 76.3
MS.gene86610.t1 AT5G67190 53.571 56 26 0 32 87 21 76 4.94e-16 74.3
MS.gene86610.t1 AT3G50260 49.206 63 32 0 25 87 14 76 4.99e-16 73.6
MS.gene86610.t1 AT3G16770 53.521 71 29 1 19 89 70 136 5.05e-16 75.5
MS.gene86610.t1 AT4G39780 57.377 61 26 0 27 87 88 148 7.38e-16 75.5
MS.gene86610.t1 AT2G20880 42.308 104 56 2 31 134 186 285 8.15e-16 76.3
MS.gene86610.t1 AT1G19210 41.667 84 49 0 32 115 12 95 8.25e-16 73.6
MS.gene86610.t1 AT5G13330 58.065 62 24 1 28 89 37 96 1.05e-15 73.9
MS.gene86610.t1 AT3G57600 60.714 56 22 0 32 87 28 83 1.10e-15 75.1
MS.gene86610.t1 AT5G61890 60.000 60 22 1 28 87 88 145 1.96e-15 73.9
MS.gene86610.t1 AT1G71520 41.837 98 52 2 26 119 8 104 2.39e-15 71.2
MS.gene86610.t1 AT2G33710 46.341 82 39 1 27 103 65 146 2.82e-15 72.8
MS.gene86610.t1 AT4G28140 54.237 59 27 0 31 89 142 200 3.04e-15 73.9
MS.gene86610.t1 AT2G33710 46.341 82 39 1 27 103 65 146 3.26e-15 72.8
MS.gene86610.t1 AT5G65130 55.932 59 26 0 31 89 112 170 4.17e-15 73.6
MS.gene86610.t1 AT5G65130 55.932 59 26 0 31 89 110 168 4.46e-15 73.2
MS.gene86610.t1 AT1G78080 57.627 59 25 0 31 89 151 209 7.90e-15 73.2
MS.gene86610.t1 AT3G11020 54.545 66 30 0 26 91 72 137 7.91e-15 73.2
MS.gene86610.t1 AT4G27950 57.143 56 24 0 32 87 118 173 8.11e-15 73.2
MS.gene86610.t1 AT5G05410 57.627 59 25 0 32 90 79 137 8.92e-15 72.8
MS.gene86610.t1 AT5G05410 57.627 59 25 0 32 90 79 137 1.42e-14 72.4
MS.gene86610.t1 AT4G11140 41.379 87 50 1 32 117 87 173 1.51e-14 72.0
MS.gene86610.t1 AT1G75490 40.000 100 59 1 1 99 10 109 1.97e-14 70.5
MS.gene86610.t1 AT3G15210 55.556 63 25 1 25 87 21 80 3.44e-14 70.1
MS.gene86610.t1 AT3G61630 50.633 79 33 2 32 110 105 177 4.08e-14 70.9
MS.gene86610.t1 AT1G77640 50.000 90 39 1 32 115 43 132 5.78e-14 69.7
MS.gene86610.t1 AT5G44210 47.887 71 30 1 32 102 33 96 6.10e-14 68.9
MS.gene86610.t1 AT1G22810 40.816 98 54 3 32 127 14 109 7.58e-14 67.4
MS.gene86610.t1 AT1G15360 57.143 56 24 0 32 87 7 62 9.25e-14 68.6
MS.gene86610.t1 AT1G15360 57.143 56 24 0 32 87 7 62 9.25e-14 68.6
MS.gene86610.t1 AT1G03800 50.000 68 31 1 20 87 44 108 9.34e-14 69.3
MS.gene86610.t1 AT5G53290 54.386 57 26 0 32 88 125 181 1.40e-13 69.7
MS.gene86610.t1 AT5G51190 55.556 63 25 2 26 87 68 128 1.73e-13 68.2
MS.gene86610.t1 AT4G23750 44.706 85 39 1 4 88 102 178 2.29e-13 68.9
MS.gene86610.t1 AT4G23750 44.706 85 39 1 4 88 102 178 2.29e-13 68.9
MS.gene86610.t1 AT1G72360 47.619 63 33 0 25 87 18 80 2.49e-13 67.4
MS.gene86610.t1 AT5G25390 55.357 56 25 0 32 87 7 62 2.83e-13 67.0
MS.gene86610.t1 AT5G25190 53.125 64 30 0 32 95 8 71 3.01e-13 66.6
MS.gene86610.t1 AT1G72360 44.000 75 42 0 13 87 55 129 3.15e-13 67.8
MS.gene86610.t1 AT5G47230 54.688 64 26 2 25 87 151 212 3.33e-13 68.2
MS.gene86610.t1 AT5G64750 48.571 70 35 1 42 111 195 263 4.07e-13 68.6
MS.gene86610.t1 AT5G43410 53.333 60 27 1 29 87 12 71 5.79e-13 64.7
MS.gene86610.t1 AT1G72360 47.619 63 33 0 25 87 69 131 6.21e-13 67.0
MS.gene86610.t1 AT5G61600 57.377 61 23 2 28 87 86 144 9.11e-13 66.2
MS.gene86610.t1 AT4G17490 53.125 64 27 2 25 87 132 193 2.23e-12 65.9
MS.gene86610.t1 AT4G31060 45.455 66 31 1 22 87 22 82 2.38e-12 64.3
MS.gene86610.t1 AT1G28370 51.786 56 27 0 32 87 20 75 2.65e-12 63.5
MS.gene86610.t1 AT1G28360 53.968 63 28 1 32 94 12 73 2.72e-12 63.9
MS.gene86610.t1 AT5G19790 44.444 90 41 3 13 96 5 91 2.76e-12 65.1
MS.gene86610.t1 AT5G18450 53.448 58 27 0 31 88 33 90 3.03e-12 65.5
MS.gene86610.t1 AT2G46310 50.000 70 31 1 32 101 99 164 3.64e-12 65.1
MS.gene86610.t1 AT5G07580 48.101 79 38 2 26 103 106 182 4.45e-12 63.9
MS.gene86610.t1 AT1G28370 51.786 56 27 0 32 87 58 113 4.52e-12 63.9
MS.gene86610.t1 AT3G23230 54.386 57 25 1 32 87 20 76 5.13e-12 62.4
MS.gene86610.t1 AT5G07310 57.812 64 25 1 28 91 90 151 6.41e-12 64.3
MS.gene86610.t1 AT3G20310 50.000 62 31 0 26 87 21 82 1.02e-11 63.5
MS.gene86610.t1 AT5G47220 54.386 57 25 1 32 87 117 173 1.40e-11 63.2
MS.gene86610.t1 AT2G40340 51.786 56 27 0 32 87 14 69 1.81e-11 63.2
MS.gene86610.t1 AT2G40340 51.786 56 27 0 32 87 14 69 1.81e-11 63.2
MS.gene86610.t1 AT2G40340 51.786 56 27 0 32 87 14 69 1.81e-11 63.2
MS.gene86610.t1 AT1G12980 49.254 67 33 1 32 97 57 123 2.45e-11 63.2
MS.gene86610.t1 AT2G40340 51.786 56 27 0 32 87 72 127 2.57e-11 62.8
MS.gene86610.t1 AT1G50640 52.381 63 27 1 25 87 24 83 2.62e-11 62.0
MS.gene86610.t1 AT2G40340 51.786 56 27 0 32 87 72 127 3.43e-11 62.8
MS.gene86610.t1 AT2G40340 51.786 56 27 0 32 87 79 134 3.86e-11 62.8
MS.gene86610.t1 AT2G40350 43.056 72 34 1 32 103 74 138 3.98e-11 60.5
MS.gene86610.t1 AT5G25390 53.571 56 23 1 32 87 7 59 4.16e-11 60.8
MS.gene86610.t1 AT2G40350 43.056 72 34 1 32 103 67 131 4.49e-11 60.1
MS.gene86610.t1 AT1G43160 45.055 91 41 1 32 122 61 142 4.90e-11 60.8

Find 74 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCCTCCACGCTTCTTC+GGG 0.232766 6.1:-50646677 None:intergenic
AACTCGCCACCCGGTGTATA+GGG 0.262123 6.1:+50646713 MS.gene86610:CDS
TTCCTCCCTCCACGCTTCTT+CGG 0.278890 6.1:-50646678 None:intergenic
GGAGTAGGAACCTAGATAAA+TGG 0.294314 6.1:+50646742 MS.gene86610:CDS
TGAACATTCCAGAGTCATTA+AGG 0.303361 6.1:+50647258 MS.gene86610:CDS
TCCAGAGTCATTAAGGAATA+TGG 0.303946 6.1:+50647265 MS.gene86610:CDS
GGAGCAGCTTATGTTTAGTA+TGG 0.317437 6.1:+50647208 MS.gene86610:CDS
AAACTCGCCACCCGGTGTAT+AGG 0.333432 6.1:+50646712 MS.gene86610:CDS
AAACATAAGCTGCTCCTCTA+TGG 0.367265 6.1:-50647201 None:intergenic
GTCTCGCAAGTAGCGGGAAT+AGG 0.374369 6.1:-50646918 None:intergenic
TTTCACACACCCATTTATCT+AGG 0.375828 6.1:-50646752 None:intergenic
GGAAGAGGAAGAAGAAGAAA+AGG 0.412306 6.1:+50647229 MS.gene86610:CDS
AGCTAACCGCACTTCCTTGT+TGG 0.414598 6.1:-50646646 None:intergenic
TGCCCATGATGTTGCGGCAC+TGG 0.424159 6.1:+50646842 MS.gene86610:CDS
TCTCGCAAGTAGCGGGAATA+GGG 0.426634 6.1:-50646917 None:intergenic
CCGCACTTCCTTGTTGGAAT+CGG 0.432766 6.1:-50646640 None:intergenic
AAATGTTCCTAGCCAAATCT+TGG 0.434109 6.1:-50646796 None:intergenic
ATGTCCCCTACACATAGCTT+GGG 0.453501 6.1:+50647293 MS.gene86610:CDS
GACAACTGATGTCGCGGCAT+TGG 0.454320 6.1:+50647004 MS.gene86610:CDS
GAGTTTGAACATATTGATCA+TGG 0.465526 6.1:+50647320 MS.gene86610:CDS
ATGCCAGTGCCGCAACATCA+TGG 0.467114 6.1:-50646845 None:intergenic
CTGTCTGAACTTTGCAGACT+CGG 0.472235 6.1:+50647046 MS.gene86610:CDS
TTAGTCGTTAAAGTCTTGTC+TGG 0.474604 6.1:-50647149 None:intergenic
CTGTCTCAACTTTGCAGACT+CGG 0.474674 6.1:+50646884 MS.gene86610:CDS
GTCTCTGTAGTGGCAGGAAA+AGG 0.477919 6.1:-50647080 None:intergenic
GAGTAGGAACCTAGATAAAT+GGG 0.479733 6.1:+50646743 MS.gene86610:CDS
TGCAGCTGCAGAAGCTGCCG+AGG 0.486116 6.1:+50647118 MS.gene86610:CDS
CGAGCTGCCATCTCGGCTGT+TGG 0.487486 6.1:-50646819 None:intergenic
GTTGTCCTTACAGTCTTGCC+TGG 0.490072 6.1:-50646987 None:intergenic
TTTCTTGTCTCTGTAGTGGC+AGG 0.491737 6.1:-50647086 None:intergenic
AAGATGATGAGGTGTCACTA+TGG 0.492934 6.1:+50647351 MS.gene86610:CDS
TGTATAGGGGTGTGAGGAGT+AGG 0.504875 6.1:+50646727 MS.gene86610:CDS
TCAGACCAGGCAAGACTGTA+AGG 0.509315 6.1:+50646982 MS.gene86610:CDS
TATATTTCTTGTCTCTGTAG+TGG 0.511538 6.1:-50647090 None:intergenic
GCTTATGTTTAGTATGGAAG+AGG 0.512417 6.1:+50647214 MS.gene86610:CDS
GCCATATTCCTTAATGACTC+TGG 0.522996 6.1:-50647266 None:intergenic
CGAGTCTGCAAAGTTGAGAC+AGG 0.529620 6.1:-50646883 None:intergenic
AATGTCCCCTACACATAGCT+TGG 0.530036 6.1:+50647292 MS.gene86610:CDS
ATGGGCACGAGCTGCCATCT+CGG 0.537633 6.1:-50646826 None:intergenic
CATGCCCCAAGCTATGTGTA+GGG 0.545969 6.1:-50647298 None:intergenic
GACGGCTGCTGAAGCTGCTG+AGG 0.548712 6.1:+50646956 MS.gene86610:CDS
TCATGCCCCAAGCTATGTGT+AGG 0.555743 6.1:-50647299 None:intergenic
AACATTTCCAACAGCCGAGA+TGG 0.558177 6.1:+50646812 MS.gene86610:CDS
TGCCAGTGCCGCAACATCAT+GGG 0.563848 6.1:-50646844 None:intergenic
GACAAAAGATATACAAAAGA+CGG 0.564704 6.1:+50646938 MS.gene86610:CDS
GCTGCTGAGGCATTCAGACC+AGG 0.572256 6.1:+50646969 MS.gene86610:CDS
TGGAGGGAGGAAGAAGTTCA+AGG 0.573943 6.1:+50646689 MS.gene86610:CDS
TGTAGTTGCCTCCGCCATAG+AGG 0.574018 6.1:+50647187 MS.gene86610:CDS
CGAGTCTGCAAAGTTCAGAC+AGG 0.574401 6.1:-50647045 None:intergenic
AGCTCGTGCCCATGATGTTG+CGG 0.581935 6.1:+50646836 MS.gene86610:CDS
CTTGTCTGGTCTGAAAGCCT+CGG 0.583680 6.1:-50647135 None:intergenic
ACTCGCCACCCGGTGTATAG+GGG 0.592111 6.1:+50646714 MS.gene86610:CDS
CCCCGAAGAAGCGTGGAGGG+AGG 0.592417 6.1:+50646676 MS.gene86610:CDS
CCTCCCTCCACGCTTCTTCG+GGG 0.593662 6.1:-50646676 None:intergenic
GTTCAAGGAAACTCGCCACC+CGG 0.597520 6.1:+50646704 MS.gene86610:CDS
GTTGCGGCACTGGCATTGAA+AGG 0.605041 6.1:+50646852 MS.gene86610:CDS
ACCCGGTGTATAGGGGTGTG+AGG 0.607238 6.1:+50646721 MS.gene86610:CDS
TCCTCACACCCCTATACACC+GGG 0.607770 6.1:-50646722 None:intergenic
AAGCTGCTCCTCTATGGCGG+AGG 0.617751 6.1:-50647195 None:intergenic
TGGAGACTTTCAAGATGATG+AGG 0.617970 6.1:+50647340 MS.gene86610:CDS
CTCCTCACACCCCTATACAC+CGG 0.618465 6.1:-50646723 None:intergenic
GTGAGTACCCCGAAGAAGCG+TGG 0.621199 6.1:+50646669 MS.gene86610:CDS
GTCGCGGCATTGGCATTGAG+AGG 0.626845 6.1:+50647014 MS.gene86610:CDS
GTACCCCGAAGAAGCGTGGA+GGG 0.641213 6.1:+50646673 MS.gene86610:CDS
CATAAGCTGCTCCTCTATGG+CGG 0.645350 6.1:-50647198 None:intergenic
TGTAAGGACAACTGATGTCG+CGG 0.655498 6.1:+50646998 MS.gene86610:CDS
AGCGGGAATAGGGAGCGTCA+AGG 0.661826 6.1:-50646907 None:intergenic
AGTACCCCGAAGAAGCGTGG+AGG 0.672866 6.1:+50646672 MS.gene86610:CDS
ATGCCCCAAGCTATGTGTAG+GGG 0.675339 6.1:-50647297 None:intergenic
TGTCCCCTACACATAGCTTG+GGG 0.681420 6.1:+50647294 MS.gene86610:CDS
CCGATTCCAACAAGGAAGTG+CGG 0.682349 6.1:+50646640 MS.gene86610:CDS
TAGGATGTCCGATTCCAACA+AGG 0.683436 6.1:+50646632 None:intergenic
GGCAGGAAAAGGAAGCAGCG+AGG 0.691703 6.1:-50647069 None:intergenic
TCACACCCCTATACACCGGG+TGG 0.714638 6.1:-50646719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GACAAAAGATATACAAAAGA+CGG + chr6.1:50646938-50646957 MS.gene86610:CDS 25.0%
CTAACAAAAAGACCAAGATT+TGG + chr6.1:50646784-50646803 MS.gene86610:CDS 30.0%
GAGTTTGAACATATTGATCA+TGG + chr6.1:50647320-50647339 MS.gene86610:CDS 30.0%
TATATTTCTTGTCTCTGTAG+TGG - chr6.1:50647093-50647112 None:intergenic 30.0%
!! CAAATCTTGGTCTTTTTGTT+AGG - chr6.1:50646786-50646805 None:intergenic 30.0%
AAAAAGACCAAGATTTGGCT+AGG + chr6.1:50646789-50646808 MS.gene86610:CDS 35.0%
AAATGTTCCTAGCCAAATCT+TGG - chr6.1:50646799-50646818 None:intergenic 35.0%
GAGTAGGAACCTAGATAAAT+GGG + chr6.1:50646743-50646762 MS.gene86610:CDS 35.0%
GCTTATGTTTAGTATGGAAG+AGG + chr6.1:50647214-50647233 MS.gene86610:CDS 35.0%
TCCAGAGTCATTAAGGAATA+TGG + chr6.1:50647265-50647284 MS.gene86610:CDS 35.0%
TGAACATTCCAGAGTCATTA+AGG + chr6.1:50647258-50647277 MS.gene86610:CDS 35.0%
TTTCACACACCCATTTATCT+AGG - chr6.1:50646755-50646774 None:intergenic 35.0%
! TTAGTCGTTAAAGTCTTGTC+TGG - chr6.1:50647152-50647171 None:intergenic 35.0%
AAACATAAGCTGCTCCTCTA+TGG - chr6.1:50647204-50647223 None:intergenic 40.0%
GCCATATTCCTTAATGACTC+TGG - chr6.1:50647269-50647288 None:intergenic 40.0%
GGAAGAGGAAGAAGAAGAAA+AGG + chr6.1:50647229-50647248 MS.gene86610:CDS 40.0%
GGAGCAGCTTATGTTTAGTA+TGG + chr6.1:50647208-50647227 MS.gene86610:CDS 40.0%
GGAGTAGGAACCTAGATAAA+TGG + chr6.1:50646742-50646761 MS.gene86610:CDS 40.0%
TGGAGACTTTCAAGATGATG+AGG + chr6.1:50647340-50647359 MS.gene86610:CDS 40.0%
! ATCTTTTGTCTCGCAAGTAG+CGG - chr6.1:50646928-50646947 None:intergenic 40.0%
!! AAGATGATGAGGTGTCACTA+TGG + chr6.1:50647351-50647370 MS.gene86610:CDS 40.0%
AACATTTCCAACAGCCGAGA+TGG + chr6.1:50646812-50646831 MS.gene86610:CDS 45.0%
AATGTCCCCTACACATAGCT+TGG + chr6.1:50647292-50647311 MS.gene86610:CDS 45.0%
ATGTCCCCTACACATAGCTT+GGG + chr6.1:50647293-50647312 MS.gene86610:CDS 45.0%
CTGTCTCAACTTTGCAGACT+CGG + chr6.1:50646884-50646903 MS.gene86610:CDS 45.0%
CTGTCTGAACTTTGCAGACT+CGG + chr6.1:50647046-50647065 MS.gene86610:CDS 45.0%
TGTAAGGACAACTGATGTCG+CGG + chr6.1:50646998-50647017 MS.gene86610:CDS 45.0%
TTTCTTGTCTCTGTAGTGGC+AGG - chr6.1:50647089-50647108 None:intergenic 45.0%
! TCTTTTGTCTCGCAAGTAGC+GGG - chr6.1:50646927-50646946 None:intergenic 45.0%
AGCTAACCGCACTTCCTTGT+TGG - chr6.1:50646649-50646668 None:intergenic 50.0%
ATGCCCCAAGCTATGTGTAG+GGG - chr6.1:50647300-50647319 None:intergenic 50.0%
CATAAGCTGCTCCTCTATGG+CGG - chr6.1:50647201-50647220 None:intergenic 50.0%
CATGCCCCAAGCTATGTGTA+GGG - chr6.1:50647301-50647320 None:intergenic 50.0%
CCGATTCCAACAAGGAAGTG+CGG + chr6.1:50646640-50646659 MS.gene86610:CDS 50.0%
CCGCACTTCCTTGTTGGAAT+CGG - chr6.1:50646643-50646662 None:intergenic 50.0%
CGAGTCTGCAAAGTTCAGAC+AGG - chr6.1:50647048-50647067 None:intergenic 50.0%
CGAGTCTGCAAAGTTGAGAC+AGG - chr6.1:50646886-50646905 None:intergenic 50.0%
CTTGTCTGGTCTGAAAGCCT+CGG - chr6.1:50647138-50647157 None:intergenic 50.0%
GTCTCTGTAGTGGCAGGAAA+AGG - chr6.1:50647083-50647102 None:intergenic 50.0%
GTTGTCCTTACAGTCTTGCC+TGG - chr6.1:50646990-50647009 None:intergenic 50.0%
TCAGACCAGGCAAGACTGTA+AGG + chr6.1:50646982-50647001 MS.gene86610:CDS 50.0%
TCATGCCCCAAGCTATGTGT+AGG - chr6.1:50647302-50647321 None:intergenic 50.0%
TGGAGGGAGGAAGAAGTTCA+AGG + chr6.1:50646689-50646708 MS.gene86610:CDS 50.0%
TGTCCCCTACACATAGCTTG+GGG + chr6.1:50647294-50647313 MS.gene86610:CDS 50.0%
! TCTCGCAAGTAGCGGGAATA+GGG - chr6.1:50646920-50646939 None:intergenic 50.0%
! TGTATAGGGGTGTGAGGAGT+AGG + chr6.1:50646727-50646746 MS.gene86610:CDS 50.0%
AAACTCGCCACCCGGTGTAT+AGG + chr6.1:50646712-50646731 MS.gene86610:CDS 55.0%
AACTCGCCACCCGGTGTATA+GGG + chr6.1:50646713-50646732 MS.gene86610:CDS 55.0%
AGCTCGTGCCCATGATGTTG+CGG + chr6.1:50646836-50646855 MS.gene86610:CDS 55.0%
ATGCCAGTGCCGCAACATCA+TGG - chr6.1:50646848-50646867 None:intergenic 55.0%
CTCCTCACACCCCTATACAC+CGG - chr6.1:50646726-50646745 None:intergenic 55.0%
GACAACTGATGTCGCGGCAT+TGG + chr6.1:50647004-50647023 MS.gene86610:CDS 55.0%
GTTCAAGGAAACTCGCCACC+CGG + chr6.1:50646704-50646723 MS.gene86610:CDS 55.0%
TCCTCACACCCCTATACACC+GGG - chr6.1:50646725-50646744 None:intergenic 55.0%
TGCCAGTGCCGCAACATCAT+GGG - chr6.1:50646847-50646866 None:intergenic 55.0%
TGTAGTTGCCTCCGCCATAG+AGG + chr6.1:50647187-50647206 MS.gene86610:CDS 55.0%
TTCCTCCCTCCACGCTTCTT+CGG - chr6.1:50646681-50646700 None:intergenic 55.0%
! GTCTCGCAAGTAGCGGGAAT+AGG - chr6.1:50646921-50646940 None:intergenic 55.0%
!! GTTGCGGCACTGGCATTGAA+AGG + chr6.1:50646852-50646871 MS.gene86610:CDS 55.0%
AAGCTGCTCCTCTATGGCGG+AGG - chr6.1:50647198-50647217 None:intergenic 60.0%
ACTCGCCACCCGGTGTATAG+GGG + chr6.1:50646714-50646733 MS.gene86610:CDS 60.0%
ATGGGCACGAGCTGCCATCT+CGG - chr6.1:50646829-50646848 None:intergenic 60.0%
GGCAGGAAAAGGAAGCAGCG+AGG - chr6.1:50647072-50647091 None:intergenic 60.0%
GTGAGTACCCCGAAGAAGCG+TGG + chr6.1:50646669-50646688 MS.gene86610:CDS 60.0%
TCACACCCCTATACACCGGG+TGG - chr6.1:50646722-50646741 None:intergenic 60.0%
TCCTCCCTCCACGCTTCTTC+GGG - chr6.1:50646680-50646699 None:intergenic 60.0%
TGCCCATGATGTTGCGGCAC+TGG + chr6.1:50646842-50646861 MS.gene86610:CDS 60.0%
! ACCCGGTGTATAGGGGTGTG+AGG + chr6.1:50646721-50646740 MS.gene86610:CDS 60.0%
! AGTACCCCGAAGAAGCGTGG+AGG + chr6.1:50646672-50646691 MS.gene86610:CDS 60.0%
! GCTGCTGAGGCATTCAGACC+AGG + chr6.1:50646969-50646988 MS.gene86610:CDS 60.0%
! GTACCCCGAAGAAGCGTGGA+GGG + chr6.1:50646673-50646692 MS.gene86610:CDS 60.0%
!! AGCGGGAATAGGGAGCGTCA+AGG - chr6.1:50646910-50646929 None:intergenic 60.0%
!! GTCGCGGCATTGGCATTGAG+AGG + chr6.1:50647014-50647033 MS.gene86610:CDS 60.0%
CCTCCCTCCACGCTTCTTCG+GGG - chr6.1:50646679-50646698 None:intergenic 65.0%
CGAGCTGCCATCTCGGCTGT+TGG - chr6.1:50646822-50646841 None:intergenic 65.0%
GACGGCTGCTGAAGCTGCTG+AGG + chr6.1:50646956-50646975 MS.gene86610:CDS 65.0%
TGCAGCTGCAGAAGCTGCCG+AGG + chr6.1:50647118-50647137 MS.gene86610:CDS 65.0%
! CCCCGAAGAAGCGTGGAGGG+AGG + chr6.1:50646676-50646695 MS.gene86610:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 50646636 50647388 50646636 ID=MS.gene86610
chr6.1 mRNA 50646636 50647388 50646636 ID=MS.gene86610.t1;Parent=MS.gene86610
chr6.1 exon 50646636 50647388 50646636 ID=MS.gene86610.t1.exon1;Parent=MS.gene86610.t1
chr6.1 CDS 50646636 50647388 50646636 ID=cds.MS.gene86610.t1;Parent=MS.gene86610.t1
Gene Sequence

>MS.gene86610

ATGTCCGATTCCAACAAGGAAGTGCGGTTAGCTGTGAGTACCCCGAAGAAGCGTGGAGGGAGGAAGAAGTTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAGTAGGAACCTAGATAAATGGGTGTGTGAAATAAGACAGCCTAACAAAAAGACCAAGATTTGGCTAGGAACATTTCCAACAGCCGAGATGGCAGCTCGTGCCCATGATGTTGCGGCACTGGCATTGAAAGGTTGCGACGCCTGTCTCAACTTTGCAGACTCGGCCTTGACGCTCCCTATTCCCGCTACTTGCGAGACAAAAGATATACAAAAGACGGCTGCTGAAGCTGCTGAGGCATTCAGACCAGGCAAGACTGTAAGGACAACTGATGTCGCGGCATTGGCATTGAGAGGTCGCAACGCCTGTCTGAACTTTGCAGACTCGGCCTCGCTGCTTCCTTTTCCTGCCACTACAGAGACAAGAAATATACAAAATGCAGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACAAGACTTTAACGACTAATGACAGTGACAGCGCTGTAGTTGCCTCCGCCATAGAGGAGCAGCTTATGTTTAGTATGGAAGAGGAAGAAGAAGAAAAGGAAGTGTTGAACATTCCAGAGTCATTAAGGAATATGGCGCTAATGTCCCCTACACATAGCTTGGGGCATGAGTTTGAACATATTGATCATGGAGACTTTCAAGATGATGAGGTGTCACTATGGAGCTTTTCAATATGA
Protein sequence

>MS.gene86610.t1

MSDSNKEVRLAVSTPKKRGGRKKFKETRHPVYRGVRSRNLDKWVCEIRQPNKKTKIWLGTFPTAEMAARAHDVAALALKGCDACLNFADSALTLPIPATCETKDIQKTAAEAAEAFRPGKTVRTTDVAALALRGRNACLNFADSASLLPFPATTETRNIQNAAAEAAEAFRPDKTLTTNDSDSAVVASAIEEQLMFSMEEEEEEKEVLNIPESLRNMALMSPTHSLGHEFEHIDHGDFQDDEVSLWSFSI