AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79321


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79321.t1 MTR_6g465530 91.000 200 16 2 1 200 1 198 1.49e-117 332
MS.gene79321.t1 MTR_6g465510 87.081 209 17 2 1 200 1 208 7.70e-112 318
MS.gene79321.t1 MTR_6g465420 76.684 193 38 3 3 194 24 210 1.27e-103 299
MS.gene79321.t1 MTR_6g465460 77.895 190 32 3 7 194 28 209 2.82e-102 296
MS.gene79321.t1 MTR_6g465450 78.974 195 33 3 2 194 23 211 3.97e-101 292
MS.gene79321.t1 MTR_6g465430 77.320 194 35 3 3 194 24 210 1.27e-97 283
MS.gene79321.t1 MTR_6g465690 75.000 188 39 2 5 191 35 215 2.61e-94 275
MS.gene79321.t1 MTR_6g466000 69.458 203 49 2 6 200 30 227 2.67e-94 274
MS.gene79321.t1 MTR_6g466130 72.000 200 50 3 1 200 35 228 3.74e-91 266
MS.gene79321.t1 MTR_6g465850 55.102 245 61 2 5 200 35 279 1.25e-73 224
MS.gene79321.t1 MTR_1g101600 59.701 201 65 4 4 200 12 200 7.72e-69 209
MS.gene79321.t1 MTR_6g465990 58.621 203 51 3 6 200 16 193 2.12e-66 202
MS.gene79321.t1 MTR_6g466020 57.672 189 51 3 10 197 20 180 1.38e-60 187
MS.gene79321.t1 MTR_5g010930 48.095 210 77 7 11 200 27 224 3.47e-52 167
MS.gene79321.t1 MTR_5g010940 46.635 208 95 5 4 200 25 227 1.25e-50 163
MS.gene79321.t1 MTR_5g010910 47.959 196 86 5 16 200 32 222 1.48e-49 160
MS.gene79321.t1 MTR_4g102660 52.113 213 79 9 3 200 14 218 2.41e-48 157
MS.gene79321.t1 MTR_3g110205 57.895 95 40 0 28 122 38 132 3.74e-32 115
MS.gene79321.t1 MTR_8g006410 65.000 80 28 0 28 107 47 126 6.04e-32 115
MS.gene79321.t1 MTR_7g117690 60.227 88 35 0 20 107 15 102 3.82e-31 112
MS.gene79321.t1 MTR_7g046260 62.963 81 30 0 27 107 55 135 1.73e-30 112
MS.gene79321.t1 MTR_2g101340 55.446 101 39 2 13 107 15 115 2.14e-30 111
MS.gene79321.t1 MTR_8g013860 63.291 79 29 0 29 107 43 121 3.33e-30 110
MS.gene79321.t1 MTR_2g085015 39.759 166 80 5 27 174 41 204 5.20e-30 110
MS.gene79321.t1 MTR_8g102800 56.566 99 43 0 23 121 27 125 1.27e-29 109
MS.gene79321.t1 MTR_5g012910 62.025 79 30 0 29 107 24 102 2.00e-29 107
MS.gene79321.t1 MTR_6g088405 62.821 78 29 0 30 107 41 118 4.95e-29 107
MS.gene79321.t1 MTR_8g027465 56.383 94 38 1 17 107 23 116 1.68e-28 105
MS.gene79321.t1 MTR_4g100650 60.256 78 31 0 30 107 71 148 1.98e-25 99.4
MS.gene79321.t1 MTR_4g102670 55.696 79 34 1 29 107 11 88 8.33e-25 95.5
MS.gene79321.t1 MTR_6g088425 61.628 86 33 0 29 114 45 130 3.88e-24 95.5
MS.gene79321.t1 MTR_4g035430 54.217 83 38 0 32 114 31 113 9.06e-24 94.4
MS.gene79321.t1 MTR_5g008590 36.932 176 102 3 33 199 11 186 4.23e-22 89.0
MS.gene79321.t1 MTR_1g006660 56.522 92 36 1 20 107 30 121 1.26e-21 89.4
MS.gene79321.t1 MTR_5g008550 35.915 142 86 2 33 169 21 162 4.18e-20 84.0
MS.gene79321.t1 MTR_2g435590 52.000 75 33 1 17 91 83 154 6.25e-18 79.7
MS.gene79321.t1 MTR_8g090350 45.161 93 46 2 17 104 95 187 8.95e-18 79.7
MS.gene79321.t1 MTR_1g060910 36.416 173 70 8 17 174 3 150 1.12e-17 77.0
MS.gene79321.t1 MTR_5g008470 45.238 84 46 0 35 118 77 160 1.40e-17 77.0
MS.gene79321.t1 MTR_3g102100 52.113 71 33 1 18 88 31 100 1.58e-17 76.6
MS.gene79321.t1 MTR_1g014780 56.667 60 26 0 32 91 37 96 1.63e-17 77.8
MS.gene79321.t1 MTR_2g043030 29.255 188 111 4 32 200 18 202 4.27e-17 76.3
MS.gene79321.t1 MTR_3g105510 44.706 85 47 0 33 117 37 121 9.08e-17 76.3
MS.gene79321.t1 MTR_1g014820 42.391 92 49 1 32 119 26 117 1.02e-16 76.3
MS.gene79321.t1 MTR_7g021010 54.412 68 30 1 26 92 4 71 1.05e-16 73.6
MS.gene79321.t1 MTR_1g101550 42.254 142 76 4 33 170 57 196 1.24e-16 75.5
MS.gene79321.t1 MTR_7g020980 48.101 79 39 1 14 92 34 110 1.57e-16 73.9
MS.gene79321.t1 MTR_1g019110 37.374 99 59 1 33 131 44 139 1.84e-16 73.9
MS.gene79321.t1 MTR_4g086220 62.500 56 21 0 33 88 96 151 2.11e-16 75.1
MS.gene79321.t1 MTR_3g074130 59.322 59 24 0 32 90 149 207 2.57e-16 76.3
MS.gene79321.t1 MTR_7g021010 43.373 83 47 0 29 111 47 129 2.63e-16 73.6
MS.gene79321.t1 MTR_5g062700 59.322 59 24 0 32 90 172 230 2.72e-16 76.3
MS.gene79321.t1 MTR_2g105380 51.471 68 33 0 21 88 105 172 2.77e-16 76.3
MS.gene79321.t1 MTR_2g043050 45.882 85 46 0 32 116 18 102 2.84e-16 74.3
MS.gene79321.t1 MTR_1g087920 45.652 92 48 1 11 100 53 144 2.89e-16 75.5
MS.gene79321.t1 MTR_1g028560 59.649 57 23 0 33 89 115 171 3.73e-16 75.9
MS.gene79321.t1 MTR_5g082950 64.286 56 20 0 33 88 66 121 3.98e-16 75.5
MS.gene79321.t1 MTR_1g090170 55.556 63 28 0 28 90 147 209 4.01e-16 75.5
MS.gene79321.t1 MTR_1g014860 51.562 64 31 0 28 91 17 80 4.67e-16 73.9
MS.gene79321.t1 MTR_5g083340 60.345 58 23 0 33 90 85 142 5.11e-16 75.9
MS.gene79321.t1 MTR_2g090235 59.322 59 24 0 32 90 217 275 5.38e-16 75.9
MS.gene79321.t1 MTR_8g092460 56.667 60 26 0 33 92 145 204 5.43e-16 75.1
MS.gene79321.t1 MTR_1g090170 55.556 63 28 0 28 90 234 296 6.18e-16 75.5
MS.gene79321.t1 MTR_4g086160 60.714 56 22 0 33 88 96 151 8.87e-16 73.2
MS.gene79321.t1 MTR_5g016750 57.143 56 24 0 33 88 25 80 1.00e-15 72.0
MS.gene79321.t1 MTR_2g089170 36.154 130 67 4 33 158 65 182 1.00e-15 72.4
MS.gene79321.t1 MTR_3g053690 59.375 64 23 1 25 88 22 82 1.21e-15 72.8
MS.gene79321.t1 MTR_4g086190 60.714 56 22 0 33 88 96 151 1.24e-15 72.8
MS.gene79321.t1 MTR_1g014800 53.333 60 28 0 32 91 30 89 1.56e-15 72.4
MS.gene79321.t1 MTR_4g086165 60.714 56 22 0 33 88 82 137 1.75e-15 72.0
MS.gene79321.t1 MTR_2g078680 60.714 56 22 0 33 88 31 86 2.08e-15 71.6
MS.gene79321.t1 MTR_4g114570 52.113 71 27 1 33 103 7 70 2.43e-15 71.6
MS.gene79321.t1 MTR_7g092190 62.500 56 21 0 33 88 30 85 2.78e-15 72.8
MS.gene79321.t1 MTR_3g105480 44.578 83 46 0 35 117 33 115 3.41e-15 71.6
MS.gene79321.t1 MTR_5g009620 44.565 92 45 1 3 88 76 167 5.85e-15 72.0
MS.gene79321.t1 MTR_1g074310 54.839 62 27 1 33 93 21 82 6.12e-15 69.3
MS.gene79321.t1 MTR_4g078710 36.893 103 59 1 33 135 28 124 6.53e-15 70.9
MS.gene79321.t1 MTR_2g438180 58.065 62 25 1 33 93 14 75 7.97e-15 68.6
MS.gene79321.t1 MTR_8g022820 51.515 66 32 0 23 88 114 179 8.62e-15 72.0
MS.gene79321.t1 MTR_8g022820 51.515 66 32 0 23 88 114 179 8.62e-15 72.0
MS.gene79321.t1 MTR_8g022820 51.515 66 32 0 23 88 113 178 8.93e-15 72.0
MS.gene79321.t1 MTR_7g028925 55.000 60 24 1 32 91 28 84 9.01e-15 67.4
MS.gene79321.t1 MTR_0939s0010 58.929 56 23 0 33 88 65 120 1.06e-14 69.7
MS.gene79321.t1 MTR_5g083330 50.685 73 36 0 18 90 20 92 1.31e-14 70.9
MS.gene79321.t1 MTR_2g015050 52.174 69 32 1 21 88 122 190 1.51e-14 70.5
MS.gene79321.t1 MTR_4g010640 58.929 56 23 0 33 88 7 62 2.00e-14 69.3
MS.gene79321.t1 MTR_2g103700 55.000 60 27 0 33 92 7 66 3.30e-14 67.8
MS.gene79321.t1 MTR_3g072610 49.438 89 41 2 33 117 25 113 3.95e-14 68.6
MS.gene79321.t1 MTR_2g014340 57.143 56 24 0 33 88 19 74 5.46e-14 67.8
MS.gene79321.t1 MTR_3g090760 32.237 152 91 2 17 158 89 238 5.80e-14 69.7
MS.gene79321.t1 MTR_1g048610 56.140 57 24 1 33 88 89 145 7.00e-14 68.2
MS.gene79321.t1 MTR_3g106290 60.714 56 22 0 33 88 8 63 7.99e-14 67.0
MS.gene79321.t1 MTR_1g070070 56.140 57 24 1 33 88 21 77 1.22e-13 65.9
MS.gene79321.t1 MTR_4g100420 57.895 57 23 1 33 88 157 213 1.45e-13 68.2
MS.gene79321.t1 MTR_4g054740 43.023 86 43 2 8 92 77 157 1.55e-13 67.4
MS.gene79321.t1 MTR_4g008860 60.714 56 22 0 33 88 8 63 1.73e-13 66.2
MS.gene79321.t1 MTR_2g043020 28.947 190 110 5 32 200 18 203 1.77e-13 66.6
MS.gene79321.t1 MTR_2g014300 58.929 56 23 0 33 88 15 70 2.20e-13 65.5
MS.gene79321.t1 MTR_1g074230 57.895 57 23 1 33 88 19 75 2.65e-13 64.7
MS.gene79321.t1 MTR_2g043040 41.176 85 50 0 32 116 18 102 3.57e-13 66.2
MS.gene79321.t1 MTR_2g016730 42.857 91 46 2 22 111 11 96 3.75e-13 67.0
MS.gene79321.t1 MTR_5g085100 47.674 86 35 2 13 98 29 104 3.80e-13 66.6
MS.gene79321.t1 MTR_4g054360 45.122 82 39 2 12 92 108 184 3.83e-13 66.6
MS.gene79321.t1 MTR_4g100450 56.140 57 24 1 33 88 154 210 3.95e-13 67.0
MS.gene79321.t1 MTR_5g085070 53.030 66 24 1 33 98 51 109 5.11e-13 66.2
MS.gene79321.t1 MTR_5g075570 48.333 60 31 0 29 88 120 179 1.01e-12 65.5
MS.gene79321.t1 MTR_5g008540 47.541 61 32 0 35 95 26 86 1.72e-12 61.2
MS.gene79321.t1 MTR_4g088005 47.826 69 35 1 21 88 45 113 2.22e-12 61.6
MS.gene79321.t1 MTR_8g099215 48.148 81 33 2 17 88 82 162 2.35e-12 64.7
MS.gene79321.t1 MTR_8g069360 53.571 56 26 0 33 88 44 99 2.71e-12 65.1
MS.gene79321.t1 MTR_1g090290 51.613 62 27 2 28 88 110 169 3.02e-12 63.2
MS.gene79321.t1 MTR_1g074250 49.206 63 30 1 30 90 16 78 3.40e-12 61.6
MS.gene79321.t1 MTR_4g054860 45.783 83 39 3 11 92 114 191 4.25e-12 63.9
MS.gene79321.t1 MTR_4g111915 47.458 59 31 0 33 91 53 111 4.62e-12 61.2
MS.gene79321.t1 MTR_6g029180 47.222 72 37 1 21 92 22 92 1.01e-11 62.8
MS.gene79321.t1 MTR_7g081815 52.632 57 26 1 33 88 61 117 1.30e-11 61.6
MS.gene79321.t1 MTR_8g006840 52.632 57 26 1 33 88 125 181 1.31e-11 61.2
MS.gene79321.t1 MTR_7g081805 52.632 57 26 1 33 88 61 117 1.36e-11 61.6
MS.gene79321.t1 MTR_6g041970 39.535 86 39 1 33 118 18 90 1.43e-11 58.9
MS.gene79321.t1 MTR_4g100380 56.140 57 24 1 33 88 145 201 1.59e-11 62.0
MS.gene79321.t1 MTR_4g112490 47.458 59 31 0 33 91 53 111 1.60e-11 61.2
MS.gene79321.t1 MTR_5g008790 50.000 60 28 1 33 90 18 77 1.81e-11 60.5
MS.gene79321.t1 MTR_8g085960 35.354 99 60 3 33 128 25 122 2.09e-11 61.2
MS.gene79321.t1 MTR_2g015040 52.632 57 26 1 33 88 63 119 2.14e-11 60.1
MS.gene79321.t1 MTR_5g032820 55.357 56 25 0 33 88 46 101 2.59e-11 62.0
MS.gene79321.t1 MTR_7g085810 50.000 60 30 0 33 92 30 89 2.80e-11 61.2
MS.gene79321.t1 MTR_8g006815 52.632 57 26 1 33 88 96 152 2.81e-11 60.5
MS.gene79321.t1 MTR_8g023700 29.560 159 86 2 32 164 116 274 2.83e-11 62.0
MS.gene79321.t1 MTR_7g011630 45.833 72 36 1 17 88 29 97 4.19e-11 61.6
MS.gene79321.t1 MTR_8g032610 52.727 55 26 0 35 89 29 83 5.11e-11 60.8
MS.gene79321.t1 MTR_7g096750 54.386 57 25 1 33 88 20 76 5.14e-11 58.5
MS.gene79321.t1 MTR_3g095190 54.795 73 32 1 33 104 170 242 5.88e-11 60.8
MS.gene79321.t1 MTR_4g119270 42.466 73 40 1 18 88 36 108 6.12e-11 60.8
MS.gene79321.t1 MTR_6g012970 51.786 56 27 0 33 88 38 93 6.77e-11 60.8
MS.gene79321.t1 MTR_7g081795 50.877 57 27 1 33 88 60 116 9.37e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79321.t1 AT4G25470 56.281 199 69 5 10 200 28 216 2.57e-69 211
MS.gene79321.t1 AT4G25480 56.281 199 67 4 11 200 29 216 2.73e-63 195
MS.gene79321.t1 AT4G25490 56.500 200 65 5 11 200 26 213 5.43e-62 192
MS.gene79321.t1 AT5G51990 51.500 200 80 4 10 200 31 222 5.80e-61 189
MS.gene79321.t1 AT1G12610 47.826 207 96 4 5 200 2 207 1.95e-54 172
MS.gene79321.t1 AT1G63030 46.429 196 87 3 6 200 3 181 6.33e-54 170
MS.gene79321.t1 AT1G63030 46.429 196 87 3 6 200 3 181 6.33e-54 170
MS.gene79321.t1 AT5G25810 58.511 94 38 1 22 114 24 117 1.92e-32 116
MS.gene79321.t1 AT2G35700 63.750 80 29 0 28 107 40 119 3.19e-31 112
MS.gene79321.t1 AT2G44940 39.080 174 75 3 22 168 89 258 1.56e-30 113
MS.gene79321.t1 AT4G16750 50.000 110 50 1 3 107 5 114 2.24e-30 110
MS.gene79321.t1 AT5G11590 60.465 86 34 0 29 114 47 132 2.29e-30 112
MS.gene79321.t1 AT2G36450 41.711 187 96 5 21 200 3 183 1.87e-29 108
MS.gene79321.t1 AT4G32800 50.467 107 47 1 20 120 6 112 1.93e-29 108
MS.gene79321.t1 AT3G16280 42.391 184 82 5 29 200 75 246 2.86e-29 109
MS.gene79321.t1 AT3G16280 42.391 184 82 5 29 200 57 228 3.18e-29 108
MS.gene79321.t1 AT1G01250 52.830 106 47 1 5 107 14 119 1.85e-28 105
MS.gene79321.t1 AT3G60490 57.317 82 34 1 27 107 64 145 3.64e-25 99.0
MS.gene79321.t1 AT2G25820 60.526 76 30 0 32 107 25 100 5.82e-25 97.4
MS.gene79321.t1 AT5G52020 43.017 179 87 6 29 200 61 231 1.36e-24 96.7
MS.gene79321.t1 AT1G71450 36.095 169 98 3 32 199 23 182 1.14e-23 93.2
MS.gene79321.t1 AT2G47520 46.512 86 43 1 9 91 23 108 2.08e-20 84.3
MS.gene79321.t1 AT1G21910 48.913 92 40 1 33 117 50 141 3.08e-20 85.1
MS.gene79321.t1 AT1G33760 53.933 89 41 0 33 121 20 108 3.64e-20 84.0
MS.gene79321.t1 AT1G77200 58.442 77 32 0 31 107 41 117 9.28e-20 84.3
MS.gene79321.t1 AT1G46768 58.730 63 25 1 28 90 27 88 7.61e-19 79.3
MS.gene79321.t1 AT1G46768 58.730 63 25 1 28 90 27 88 7.88e-19 79.7
MS.gene79321.t1 AT1G46768 58.730 63 25 1 28 90 27 88 7.88e-19 79.7
MS.gene79321.t1 AT4G13620 61.017 59 23 0 32 90 231 289 1.57e-18 82.8
MS.gene79321.t1 AT3G16770 55.556 72 28 1 19 90 69 136 7.11e-18 79.3
MS.gene79321.t1 AT2G22200 50.667 75 35 1 32 104 70 144 8.02e-18 79.3
MS.gene79321.t1 AT1G22190 54.795 73 31 1 18 90 70 140 8.44e-18 79.3
MS.gene79321.t1 AT4G06746 54.839 62 28 0 33 94 36 97 1.17e-17 76.6
MS.gene79321.t1 AT4G39780 59.016 61 25 0 28 88 88 148 1.29e-17 79.0
MS.gene79321.t1 AT1G12630 39.227 181 98 4 29 200 15 192 2.12e-17 77.0
MS.gene79321.t1 AT5G21960 47.619 84 44 0 31 114 5 88 2.99e-17 77.0
MS.gene79321.t1 AT3G50260 39.640 111 55 3 26 136 14 112 3.11e-17 75.5
MS.gene79321.t1 AT5G65130 53.247 77 34 1 18 92 96 172 3.13e-17 78.2
MS.gene79321.t1 AT5G65130 53.247 77 34 1 18 92 94 170 3.18e-17 77.8
MS.gene79321.t1 AT1G74930 44.186 86 48 0 33 118 21 106 3.75e-17 76.3
MS.gene79321.t1 AT2G23340 46.591 88 41 1 33 114 28 115 3.76e-17 75.9
MS.gene79321.t1 AT4G36900 56.667 60 26 0 29 88 26 85 6.18e-17 75.9
MS.gene79321.t1 AT5G67190 57.143 56 24 0 33 88 21 76 1.69e-16 74.3
MS.gene79321.t1 AT2G33710 49.367 79 35 1 28 101 65 143 1.80e-16 75.1
MS.gene79321.t1 AT1G78080 59.322 59 24 0 32 90 151 209 1.96e-16 76.6
MS.gene79321.t1 AT2G33710 49.367 79 35 1 28 101 65 143 2.09e-16 75.1
MS.gene79321.t1 AT1G19210 36.522 115 73 0 33 147 12 126 6.90e-16 72.8
MS.gene79321.t1 AT3G11020 56.061 66 29 0 27 92 72 137 7.62e-16 74.7
MS.gene79321.t1 AT4G28140 55.932 59 26 0 32 90 142 200 7.89e-16 74.3
MS.gene79321.t1 AT1G36060 61.404 57 22 0 32 88 142 198 8.30e-16 74.7
MS.gene79321.t1 AT3G57600 52.778 72 34 0 17 88 12 83 9.59e-16 73.9
MS.gene79321.t1 AT2G20880 39.450 109 61 1 32 140 186 289 1.18e-15 74.3
MS.gene79321.t1 AT4G27950 59.649 57 23 0 33 89 118 174 1.74e-15 73.9
MS.gene79321.t1 AT5G13330 54.688 64 27 1 29 92 37 98 2.04e-15 72.0
MS.gene79321.t1 AT3G15210 60.714 56 22 0 33 88 25 80 2.55e-15 72.0
MS.gene79321.t1 AT1G03800 52.941 68 29 1 21 88 44 108 3.49e-15 72.0
MS.gene79321.t1 AT5G61890 54.688 64 27 1 29 92 88 149 3.98e-15 72.0
MS.gene79321.t1 AT5G61600 60.656 61 21 2 29 88 86 144 6.22e-15 71.2
MS.gene79321.t1 AT5G64750 35.652 115 65 3 43 154 195 303 9.12e-15 72.0
MS.gene79321.t1 AT5G07580 49.367 79 37 2 27 104 106 182 1.07e-14 70.1
MS.gene79321.t1 AT1G71520 33.803 142 71 5 27 162 8 132 1.09e-14 68.6
MS.gene79321.t1 AT3G61630 48.101 79 35 1 33 111 105 177 1.11e-14 71.2
MS.gene79321.t1 AT5G44210 58.929 56 23 0 33 88 33 88 1.19e-14 69.7
MS.gene79321.t1 AT1G15360 58.929 56 23 0 33 88 7 62 1.28e-14 69.7
MS.gene79321.t1 AT1G15360 58.929 56 23 0 33 88 7 62 1.28e-14 69.7
MS.gene79321.t1 AT4G11140 57.143 56 24 0 33 88 87 142 1.39e-14 70.9
MS.gene79321.t1 AT1G22810 39.785 93 41 2 33 117 14 99 1.45e-14 68.2
MS.gene79321.t1 AT5G05410 57.627 59 25 0 33 91 79 137 1.47e-14 70.9
MS.gene79321.t1 AT1G75490 48.611 72 37 0 32 103 41 112 1.48e-14 69.7
MS.gene79321.t1 AT1G43160 37.405 131 70 3 33 163 61 179 1.68e-14 69.3
MS.gene79321.t1 AT5G47230 52.778 72 33 1 18 88 141 212 1.95e-14 70.5
MS.gene79321.t1 AT5G05410 57.627 59 25 0 33 91 79 137 1.98e-14 70.9
MS.gene79321.t1 AT5G51190 57.143 63 24 2 27 88 68 128 2.06e-14 69.3
MS.gene79321.t1 AT1G72360 44.737 76 42 0 13 88 54 129 3.34e-14 69.3
MS.gene79321.t1 AT1G72360 49.206 63 32 0 26 88 18 80 3.50e-14 68.6
MS.gene79321.t1 AT5G25390 55.357 56 25 0 33 88 7 62 4.89e-14 67.8
MS.gene79321.t1 AT5G43410 55.000 60 26 1 30 88 12 71 4.94e-14 66.6
MS.gene79321.t1 AT1G72360 49.206 63 32 0 26 88 69 131 9.23e-14 68.2
MS.gene79321.t1 AT4G31060 41.463 82 44 1 11 88 1 82 9.33e-14 67.0
MS.gene79321.t1 AT3G23230 51.613 62 29 1 33 93 20 81 1.04e-13 65.9
MS.gene79321.t1 AT5G53290 56.140 57 25 0 33 89 125 181 1.19e-13 68.9
MS.gene79321.t1 AT1G28370 57.143 56 24 0 33 88 20 75 1.33e-13 66.2
MS.gene79321.t1 AT5G18450 47.500 80 38 1 9 88 14 89 1.59e-13 68.2
MS.gene79321.t1 AT2G46310 55.357 56 25 0 33 88 99 154 1.63e-13 67.8
MS.gene79321.t1 AT1G28370 57.143 56 24 0 33 88 58 113 2.11e-13 66.2
MS.gene79321.t1 AT3G20310 53.226 62 29 0 27 88 21 82 2.71e-13 66.6
MS.gene79321.t1 AT4G23750 54.386 57 26 0 33 89 122 178 3.66e-13 67.4
MS.gene79321.t1 AT4G23750 54.386 57 26 0 33 89 122 178 3.66e-13 67.4
MS.gene79321.t1 AT5G25190 58.929 56 23 0 33 88 8 63 6.52e-13 64.7
MS.gene79321.t1 AT1G28360 55.000 60 27 0 33 92 12 71 6.95e-13 64.7
MS.gene79321.t1 AT4G17490 55.556 63 25 2 27 88 133 193 8.38e-13 65.9
MS.gene79321.t1 AT1G77640 45.556 90 43 1 33 116 43 132 1.01e-12 65.1
MS.gene79321.t1 AT2G40340 53.571 56 26 0 33 88 14 69 1.51e-12 65.1
MS.gene79321.t1 AT2G40340 53.571 56 26 0 33 88 14 69 1.51e-12 65.1
MS.gene79321.t1 AT2G40340 53.571 56 26 0 33 88 14 69 1.51e-12 65.1
MS.gene79321.t1 AT1G50640 57.143 56 24 0 33 88 28 83 1.95e-12 63.9
MS.gene79321.t1 AT5G19790 53.448 58 27 0 33 90 22 79 2.01e-12 64.3
MS.gene79321.t1 AT5G47220 56.140 57 24 1 33 88 117 173 2.32e-12 64.3
MS.gene79321.t1 AT2G40340 53.571 56 26 0 33 88 72 127 2.42e-12 64.7
MS.gene79321.t1 AT2G40340 53.571 56 26 0 33 88 72 127 2.72e-12 64.7
MS.gene79321.t1 AT2G40340 53.571 56 26 0 33 88 79 134 3.25e-12 64.7
MS.gene79321.t1 AT5G61590 59.701 67 24 2 23 88 99 163 7.35e-12 62.0
MS.gene79321.t1 AT1G12890 44.872 78 40 1 11 88 2 76 7.81e-12 62.4
MS.gene79321.t1 AT2G40220 64.912 57 20 0 33 89 55 111 8.72e-12 63.2
MS.gene79321.t1 AT4G17500 56.140 57 24 1 33 88 148 204 1.48e-11 62.4
MS.gene79321.t1 AT3G23240 50.000 58 28 1 33 89 82 139 1.99e-11 61.2
MS.gene79321.t1 AT5G25390 51.786 56 24 1 33 88 7 59 2.07e-11 60.8
MS.gene79321.t1 AT2G44840 54.386 57 25 1 33 88 92 148 2.12e-11 61.2
MS.gene79321.t1 AT5G07310 49.315 73 35 1 16 88 77 147 2.72e-11 61.2
MS.gene79321.t1 AT1G12980 55.357 56 25 0 33 88 57 112 4.41e-11 61.2
MS.gene79321.t1 AT1G24590 51.562 64 28 1 33 96 58 118 4.47e-11 61.2
MS.gene79321.t1 AT2G40350 48.214 56 29 0 33 88 74 129 6.25e-11 58.9
MS.gene79321.t1 AT2G40350 48.214 56 29 0 33 88 67 122 6.57e-11 58.5

Find 59 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGAGGAACTTAGATAAA+TGG 0.259157 6.3:+56127459 MS.gene79321:CDS
CAAATCCTAGTCTTCTTATT+CGG 0.304564 6.3:-56127500 None:intergenic
AGCAGGGAGGAAGAAGTTTA+AGG 0.309502 6.3:+56127406 MS.gene79321:CDS
GCCAGAGTTGTGGAGGAATA+TGG 0.338237 6.3:+56127835 MS.gene79321:CDS
TTAAACTTCTTCCTCCCTGC+TGG 0.404819 6.3:-56127404 None:intergenic
CGAATAAGAAGACTAGGATT+TGG 0.406523 6.3:+56127501 MS.gene79321:CDS
GCCTCAGCGGTGGCAGGAAT+AGG 0.415517 6.3:-56127635 None:intergenic
GAAGAGGAACTTAGATAAAT+GGG 0.423648 6.3:+56127460 MS.gene79321:CDS
GTGTGCACGGGCAGCCATCT+CGG 0.428196 6.3:-56127543 None:intergenic
CGTTGCAGCAATTGCATTGA+GGG 0.436008 6.3:+56127568 MS.gene79321:CDS
CTGTCTCAACTTTGCAGACT+CGG 0.436160 6.3:+56127601 MS.gene79321:CDS
TTAGTCATTAAAGTCTTGTC+TGG 0.441603 6.3:-56127704 None:intergenic
AATGTCCCCTACACATAGTA+TGG 0.442156 6.3:+56127862 MS.gene79321:CDS
GGCAGCTGCAGAAGCTGCCG+AGG 0.451466 6.3:+56127673 MS.gene79321:CDS
ATATGTTTACAAGTAACAAC+GGG 0.454775 6.3:+56127348 None:intergenic
TTGCTGCAACGTCGTGTGCA+CGG 0.466937 6.3:-56127556 None:intergenic
TGCTGCAACGTCGTGTGCAC+GGG 0.472831 6.3:-56127555 None:intergenic
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6.3:+56127444 MS.gene79321:CDS
AGTACAAGACTTTCAATATG+AGG 0.490333 6.3:+56127907 MS.gene79321:CDS
CATGCTCCATACTATGTGTA+GGG 0.491173 6.3:-56127868 None:intergenic
ACTCGCCACCCGGTGTATAG+AGG 0.496516 6.3:+56127431 MS.gene79321:CDS
CTGAGGCAAAAGACATTCAA+AGG 0.499259 6.3:+56127651 MS.gene79321:CDS
TGAAGTCGAAGAAGAAGAAG+AGG 0.500617 6.3:+56127799 MS.gene79321:CDS
GCCATATTCCTCCACAACTC+TGG 0.506491 6.3:-56127836 None:intergenic
TAAATGGGTATGTGAAATGA+GGG 0.506863 6.3:+56127475 MS.gene79321:CDS
AATATGAGGAGGTATCACTA+TGG 0.509514 6.3:+56127921 MS.gene79321:CDS
ATAAATGGGTATGTGAAATG+AGG 0.510310 6.3:+56127474 MS.gene79321:CDS
ACGTTGCAGCAATTGCATTG+AGG 0.536298 6.3:+56127567 MS.gene79321:CDS
TCATGCTCCATACTATGTGT+AGG 0.541468 6.3:-56127869 None:intergenic
AAGAAGACTAGGATTTGGCT+AGG 0.549278 6.3:+56127506 MS.gene79321:CDS
GTTTAAGGAGACTCGCCACC+CGG 0.558195 6.3:+56127421 MS.gene79321:CDS
CGAGTCTGCAAAGTTGAGAC+AGG 0.558907 6.3:-56127600 None:intergenic
TTACAAGTAACAACGGGGAG+GGG 0.563550 6.3:+56127354 MS.gene79321:CDS
TGAGGCAAAAGACATTCAAA+GGG 0.575611 6.3:+56127652 MS.gene79321:CDS
TTCCTCACACCTCTATACAC+CGG 0.578151 6.3:-56127440 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6.3:-56127439 None:intergenic
TCCTATTCCTGCCACCGCTG+AGG 0.581983 6.3:+56127634 MS.gene79321:CDS
GGGAACCGAATAAGAAGACT+AGG 0.583565 6.3:+56127495 MS.gene79321:CDS
CTTGTCTGGTCTGAAAGCCT+CGG 0.583680 6.3:-56127690 None:intergenic
TAATGACATTGACACGGTTG+TGG 0.584743 6.3:+56127724 MS.gene79321:CDS
TTTACAAGTAACAACGGGGA+GGG 0.587349 6.3:+56127353 MS.gene79321:CDS
CAAGTAACAACGGGGAGGGG+CGG 0.588787 6.3:+56127357 MS.gene79321:CDS
TCAACTTTGCAGACTCGGTG+TGG 0.601701 6.3:+56127606 MS.gene79321:CDS
TGTGGCTGTTGTCGTTGCAG+TGG 0.604136 6.3:+56127742 MS.gene79321:CDS
ACTTTGCAGACTCGGTGTGG+AGG 0.609381 6.3:+56127609 MS.gene79321:CDS
TGTTGAATATGCCAGAGTTG+TGG 0.615027 6.3:+56127825 MS.gene79321:CDS
TGTCGTTGCAGTGGAAGAAG+AGG 0.624573 6.3:+56127751 MS.gene79321:CDS
GATATGTTTACAAGTAACAA+CGG 0.629910 6.3:+56127347 None:intergenic
GTTGCAGCAATTGCATTGAG+GGG 0.634472 6.3:+56127569 MS.gene79321:CDS
AGAAGACTAGGATTTGGCTA+GGG 0.635435 6.3:+56127507 MS.gene79321:CDS
AATGACTAATGACATTGACA+CGG 0.658662 6.3:+56127718 MS.gene79321:CDS
CAAAGTTGAGACAGGCGTAG+CGG 0.672645 6.3:-56127592 None:intergenic
ACAAGACTTTCAATATGAGG+AGG 0.676699 6.3:+56127910 MS.gene79321:CDS
TGAATATGCCAGAGTTGTGG+AGG 0.686416 6.3:+56127828 MS.gene79321:CDS
GTTTACAAGTAACAACGGGG+AGG 0.703815 6.3:+56127352 MS.gene79321:CDS
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6.3:+56127438 MS.gene79321:CDS
ATGCTCCATACTATGTGTAG+GGG 0.710393 6.3:-56127867 None:intergenic
TCACACCTCTATACACCGGG+TGG 0.726886 6.3:-56127436 None:intergenic
TATGTTTACAAGTAACAACG+GGG 0.831032 6.3:+56127349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AATGACTAATGACATTGACA+CGG + chr6.3:56127718-56127737 MS.gene79321:CDS 30.0%
AGTACAAGACTTTCAATATG+AGG + chr6.3:56127907-56127926 MS.gene79321:CDS 30.0%
ATAAATGGGTATGTGAAATG+AGG + chr6.3:56127474-56127493 MS.gene79321:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6.3:56127460-56127479 MS.gene79321:CDS 30.0%
TAAATGGGTATGTGAAATGA+GGG + chr6.3:56127475-56127494 MS.gene79321:CDS 30.0%
! CAAATCCTAGTCTTCTTATT+CGG - chr6.3:56127503-56127522 None:intergenic 30.0%
! TTAGTCATTAAAGTCTTGTC+TGG - chr6.3:56127707-56127726 None:intergenic 30.0%
ACAAGACTTTCAATATGAGG+AGG + chr6.3:56127910-56127929 MS.gene79321:CDS 35.0%
CGAATAAGAAGACTAGGATT+TGG + chr6.3:56127501-56127520 MS.gene79321:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6.3:56127459-56127478 MS.gene79321:CDS 35.0%
TGAGGCAAAAGACATTCAAA+GGG + chr6.3:56127652-56127671 MS.gene79321:CDS 35.0%
!! AATATGAGGAGGTATCACTA+TGG + chr6.3:56127921-56127940 MS.gene79321:CDS 35.0%
AAGAAGACTAGGATTTGGCT+AGG + chr6.3:56127506-56127525 MS.gene79321:CDS 40.0%
AATGTCCCCTACACATAGTA+TGG + chr6.3:56127862-56127881 MS.gene79321:CDS 40.0%
AGAAGACTAGGATTTGGCTA+GGG + chr6.3:56127507-56127526 MS.gene79321:CDS 40.0%
ATGCTCCATACTATGTGTAG+GGG - chr6.3:56127870-56127889 None:intergenic 40.0%
CATGCTCCATACTATGTGTA+GGG - chr6.3:56127871-56127890 None:intergenic 40.0%
CTGAGGCAAAAGACATTCAA+AGG + chr6.3:56127651-56127670 MS.gene79321:CDS 40.0%
TAATGACATTGACACGGTTG+TGG + chr6.3:56127724-56127743 MS.gene79321:CDS 40.0%
TCATGCTCCATACTATGTGT+AGG - chr6.3:56127872-56127891 None:intergenic 40.0%
TGAAGTCGAAGAAGAAGAAG+AGG + chr6.3:56127799-56127818 MS.gene79321:CDS 40.0%
TGTTGAATATGCCAGAGTTG+TGG + chr6.3:56127825-56127844 MS.gene79321:CDS 40.0%
TTTACAAGTAACAACGGGGA+GGG + chr6.3:56127353-56127372 MS.gene79321:CDS 40.0%
! TTGAATGTCTTTTGCCTCAG+CGG - chr6.3:56127651-56127670 None:intergenic 40.0%
ACGTTGCAGCAATTGCATTG+AGG + chr6.3:56127567-56127586 MS.gene79321:CDS 45.0%
AGCAGGGAGGAAGAAGTTTA+AGG + chr6.3:56127406-56127425 MS.gene79321:CDS 45.0%
AGTTGCCCAAAAAAACCAGC+AGG + chr6.3:56127389-56127408 MS.gene79321:CDS 45.0%
CGTTGCAGCAATTGCATTGA+GGG + chr6.3:56127568-56127587 MS.gene79321:CDS 45.0%
CTGTCTCAACTTTGCAGACT+CGG + chr6.3:56127601-56127620 MS.gene79321:CDS 45.0%
GGGAACCGAATAAGAAGACT+AGG + chr6.3:56127495-56127514 MS.gene79321:CDS 45.0%
GTTGCAGCAATTGCATTGAG+GGG + chr6.3:56127569-56127588 MS.gene79321:CDS 45.0%
GTTGCCCAAAAAAACCAGCA+GGG + chr6.3:56127390-56127409 MS.gene79321:CDS 45.0%
GTTTACAAGTAACAACGGGG+AGG + chr6.3:56127352-56127371 MS.gene79321:CDS 45.0%
TGAATATGCCAGAGTTGTGG+AGG + chr6.3:56127828-56127847 MS.gene79321:CDS 45.0%
TTAAACTTCTTCCTCCCTGC+TGG - chr6.3:56127407-56127426 None:intergenic 45.0%
TTACAAGTAACAACGGGGAG+GGG + chr6.3:56127354-56127373 MS.gene79321:CDS 45.0%
TTCCTCACACCTCTATACAC+CGG - chr6.3:56127443-56127462 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + chr6.3:56127444-56127463 MS.gene79321:CDS 45.0%
!!! TCCTCCCTGCTGGTTTTTTT+GGG - chr6.3:56127397-56127416 None:intergenic 45.0%
!!! TGGTTTTTTTGGGCAACTCG+CGG - chr6.3:56127387-56127406 None:intergenic 45.0%
!!! TTCCTCCCTGCTGGTTTTTT+TGG - chr6.3:56127398-56127417 None:intergenic 45.0%
CAAAGTTGAGACAGGCGTAG+CGG - chr6.3:56127595-56127614 None:intergenic 50.0%
CGAGTCTGCAAAGTTGAGAC+AGG - chr6.3:56127603-56127622 None:intergenic 50.0%
CTTGTCTGGTCTGAAAGCCT+CGG - chr6.3:56127693-56127712 None:intergenic 50.0%
GCCAGAGTTGTGGAGGAATA+TGG + chr6.3:56127835-56127854 MS.gene79321:CDS 50.0%
GCCATATTCCTCCACAACTC+TGG - chr6.3:56127839-56127858 None:intergenic 50.0%
TCCTCACACCTCTATACACC+GGG - chr6.3:56127442-56127461 None:intergenic 50.0%
TGTCGTTGCAGTGGAAGAAG+AGG + chr6.3:56127751-56127770 MS.gene79321:CDS 50.0%
! AATGTCTTTTGCCTCAGCGG+TGG - chr6.3:56127648-56127667 None:intergenic 50.0%
! GACTTTTGCAACAGCCGAGA+TGG + chr6.3:56127529-56127548 MS.gene79321:CDS 50.0%
!! TCAACTTTGCAGACTCGGTG+TGG + chr6.3:56127606-56127625 MS.gene79321:CDS 50.0%
GCCCAAAAAAACCAGCAGGG+AGG + chr6.3:56127393-56127412 MS.gene79321:CDS 55.0%
GTTTAAGGAGACTCGCCACC+CGG + chr6.3:56127421-56127440 MS.gene79321:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - chr6.3:56127439-56127458 None:intergenic 55.0%
TGTGGCTGTTGTCGTTGCAG+TGG + chr6.3:56127742-56127761 MS.gene79321:CDS 55.0%
TTGCTGCAACGTCGTGTGCA+CGG - chr6.3:56127559-56127578 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + chr6.3:56127438-56127457 MS.gene79321:CDS 55.0%
!! ACTTTGCAGACTCGGTGTGG+AGG + chr6.3:56127609-56127628 MS.gene79321:CDS 55.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6.3:56127431-56127450 MS.gene79321:CDS 60.0%
CAAGTAACAACGGGGAGGGG+CGG + chr6.3:56127357-56127376 MS.gene79321:CDS 60.0%
TCCTATTCCTGCCACCGCTG+AGG + chr6.3:56127634-56127653 MS.gene79321:CDS 60.0%
TGCTGCAACGTCGTGTGCAC+GGG - chr6.3:56127558-56127577 None:intergenic 60.0%
! TCTTTTGCCTCAGCGGTGGC+AGG - chr6.3:56127644-56127663 None:intergenic 60.0%
GCCTCAGCGGTGGCAGGAAT+AGG - chr6.3:56127638-56127657 None:intergenic 65.0%
GTGTGCACGGGCAGCCATCT+CGG - chr6.3:56127546-56127565 None:intergenic 65.0%
GGCAGCTGCAGAAGCTGCCG+AGG + chr6.3:56127673-56127692 MS.gene79321:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 56127350 56127952 56127350 ID=MS.gene79321
chr6.3 mRNA 56127350 56127952 56127350 ID=MS.gene79321.t1;Parent=MS.gene79321
chr6.3 exon 56127350 56127952 56127350 ID=MS.gene79321.t1.exon1;Parent=MS.gene79321.t1
chr6.3 CDS 56127350 56127952 56127350 ID=cds.MS.gene79321.t1;Parent=MS.gene79321.t1
Gene Sequence

>MS.gene79321

ATGTTTACAAGTAACAACGGGGAGGGGCGGTTAGCCGCGAGTTGCCCAAAAAAACCAGCAGGGAGGAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTATGTGAAATGAGGGAACCGAATAAGAAGACTAGGATTTGGCTAGGGACTTTTGCAACAGCCGAGATGGCTGCCCGTGCACACGACGTTGCAGCAATTGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCGGTGTGGAGGCTTCCTATTCCTGCCACCGCTGAGGCAAAAGACATTCAAAGGGCAGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACAAGACTTTAATGACTAATGACATTGACACGGTTGTGGCTGTTGTCGTTGCAGTGGAAGAAGAGGAAGAACTGTTGAATATGTTTTGTGTTGAAGTCGAAGAAGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGTATGGAGCATGAGTATGAAGATTTTGAAGTACAAGACTTTCAATATGAGGAGGTATCACTATGGAACTTCTAA

Protein sequence

>MS.gene79321.t1

MFTSNNGEGRLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRYACLNFADSVWRLPIPATAEAKDIQRAAAEAAEAFRPDKTLMTNDIDTVVAVVVAVEEEEELLNMFCVEVEEEEEEVLNMPELWRNMALMSPTHSMEHEYEDFEVQDFQYEEVSLWNF