AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79310.t1 MTR_6g465420 90.000 210 21 0 1 210 1 210 3.12e-136 382
MS.gene79310.t1 MTR_6g465450 85.308 211 30 1 1 210 1 211 1.47e-127 360
MS.gene79310.t1 MTR_6g465430 88.152 211 23 2 1 210 1 210 2.47e-125 354
MS.gene79310.t1 MTR_6g465460 86.256 211 26 2 1 210 1 209 2.52e-123 350
MS.gene79310.t1 MTR_6g465530 75.758 198 41 3 24 216 3 198 1.45e-98 285
MS.gene79310.t1 MTR_6g466000 70.000 200 48 3 27 216 30 227 2.60e-98 285
MS.gene79310.t1 MTR_6g465510 75.980 204 34 2 27 216 6 208 4.40e-96 279
MS.gene79310.t1 MTR_6g465690 69.266 218 48 4 4 208 5 216 2.74e-95 279
MS.gene79310.t1 MTR_6g466130 73.822 191 48 2 27 216 39 228 2.97e-90 265
MS.gene79310.t1 MTR_1g101600 58.462 195 78 2 22 216 9 200 7.08e-70 212
MS.gene79310.t1 MTR_6g465850 51.613 248 64 4 24 216 33 279 3.39e-69 213
MS.gene79310.t1 MTR_6g465990 57.500 200 53 4 27 216 16 193 9.04e-69 209
MS.gene79310.t1 MTR_6g466020 57.297 185 57 4 29 213 18 180 5.67e-61 189
MS.gene79310.t1 MTR_4g102660 55.288 208 75 8 24 216 14 218 2.23e-55 176
MS.gene79310.t1 MTR_5g010930 47.291 203 90 4 29 216 24 224 1.36e-53 171
MS.gene79310.t1 MTR_5g010940 45.536 224 102 5 10 216 7 227 1.08e-51 167
MS.gene79310.t1 MTR_5g010910 46.535 202 90 5 30 216 24 222 3.71e-49 160
MS.gene79310.t1 MTR_8g006410 59.341 91 37 0 38 128 36 126 2.28e-33 119
MS.gene79310.t1 MTR_3g110205 56.436 101 44 0 43 143 32 132 3.30e-33 118
MS.gene79310.t1 MTR_7g046260 56.842 95 41 0 34 128 41 135 2.16e-31 115
MS.gene79310.t1 MTR_7g117690 63.750 80 29 0 49 128 23 102 3.45e-31 112
MS.gene79310.t1 MTR_5g012910 63.291 79 29 0 50 128 24 102 1.73e-30 111
MS.gene79310.t1 MTR_2g085015 60.000 90 34 2 48 135 41 130 2.09e-30 112
MS.gene79310.t1 MTR_2g101340 40.805 174 91 2 21 188 8 175 2.30e-30 111
MS.gene79310.t1 MTR_8g027465 51.376 109 46 3 24 128 11 116 4.05e-29 107
MS.gene79310.t1 MTR_8g013860 50.806 124 59 2 24 145 15 138 1.02e-28 107
MS.gene79310.t1 MTR_8g102800 55.769 104 44 1 38 141 23 124 4.87e-28 106
MS.gene79310.t1 MTR_6g088405 61.538 78 30 0 51 128 41 118 1.25e-27 104
MS.gene79310.t1 MTR_6g088425 51.163 129 52 2 17 135 3 130 8.52e-26 100
MS.gene79310.t1 MTR_4g100650 60.256 78 31 0 51 128 71 148 1.57e-25 100
MS.gene79310.t1 MTR_4g102670 56.962 79 33 1 50 128 11 88 3.44e-25 97.1
MS.gene79310.t1 MTR_4g035430 53.608 97 40 1 39 135 22 113 4.44e-25 98.2
MS.gene79310.t1 MTR_5g008590 37.569 181 89 4 54 215 11 186 3.58e-21 87.0
MS.gene79310.t1 MTR_1g006660 60.759 79 31 0 50 128 43 121 3.69e-21 88.6
MS.gene79310.t1 MTR_5g008550 35.443 158 85 4 54 200 21 172 1.17e-19 83.2
MS.gene79310.t1 MTR_1g014780 35.036 137 73 2 25 154 18 145 6.33e-19 82.0
MS.gene79310.t1 MTR_2g435590 54.545 66 30 0 47 112 89 154 1.56e-17 79.0
MS.gene79310.t1 MTR_5g008470 37.143 105 66 0 56 160 77 181 2.22e-17 77.0
MS.gene79310.t1 MTR_1g060910 36.310 168 71 6 38 189 3 150 2.49e-17 76.6
MS.gene79310.t1 MTR_3g105510 41.509 106 44 1 54 159 37 124 2.53e-17 78.2
MS.gene79310.t1 MTR_1g101550 43.972 141 69 3 54 185 57 196 2.99e-17 77.8
MS.gene79310.t1 MTR_1g014820 43.478 92 48 1 53 140 26 117 3.29e-17 78.2
MS.gene79310.t1 MTR_3g074130 54.167 72 31 1 38 109 136 205 6.58e-17 78.2
MS.gene79310.t1 MTR_5g083340 62.069 58 22 0 54 111 85 142 8.63e-17 78.6
MS.gene79310.t1 MTR_1g014860 39.394 99 53 1 49 140 17 115 1.06e-16 75.9
MS.gene79310.t1 MTR_1g090170 57.377 61 26 0 49 109 147 207 1.66e-16 77.0
MS.gene79310.t1 MTR_7g021010 43.820 89 49 1 45 132 2 90 1.90e-16 73.2
MS.gene79310.t1 MTR_1g090170 55.556 63 28 0 49 111 234 296 2.56e-16 77.0
MS.gene79310.t1 MTR_2g043050 44.706 85 47 0 53 137 18 102 2.67e-16 74.7
MS.gene79310.t1 MTR_5g062700 59.322 59 24 0 53 111 172 230 2.93e-16 76.6
MS.gene79310.t1 MTR_1g087920 38.211 123 64 3 1 121 32 144 2.98e-16 76.3
MS.gene79310.t1 MTR_3g102100 58.929 56 23 0 54 109 45 100 3.75e-16 73.6
MS.gene79310.t1 MTR_2g105380 42.268 97 51 1 18 109 76 172 3.81e-16 76.3
MS.gene79310.t1 MTR_8g090350 59.649 57 23 0 53 109 112 168 4.22e-16 75.5
MS.gene79310.t1 MTR_2g090235 59.322 59 24 0 53 111 217 275 4.82e-16 76.3
MS.gene79310.t1 MTR_7g020980 51.562 64 31 0 50 113 47 110 5.67e-16 73.2
MS.gene79310.t1 MTR_7g021010 43.820 89 49 1 45 132 41 129 6.56e-16 72.8
MS.gene79310.t1 MTR_2g043030 41.758 91 53 0 53 143 18 108 7.51e-16 73.2
MS.gene79310.t1 MTR_1g014800 42.222 90 45 1 53 135 30 119 7.54e-16 73.6
MS.gene79310.t1 MTR_3g105480 41.346 104 43 1 56 159 33 118 8.37e-16 73.6
MS.gene79310.t1 MTR_1g028560 57.895 57 24 0 54 110 115 171 1.25e-15 74.7
MS.gene79310.t1 MTR_8g092460 38.095 105 62 1 54 155 145 249 1.97e-15 73.9
MS.gene79310.t1 MTR_4g086220 60.714 56 22 0 54 109 96 151 2.99e-15 72.4
MS.gene79310.t1 MTR_5g083330 50.685 73 36 0 39 111 20 92 3.40e-15 73.2
MS.gene79310.t1 MTR_1g019110 51.613 62 30 0 54 115 44 105 4.14e-15 70.9
MS.gene79310.t1 MTR_3g053690 56.923 65 25 1 45 109 21 82 5.50e-15 71.2
MS.gene79310.t1 MTR_7g028925 55.000 60 24 1 53 112 28 84 6.20e-15 68.2
MS.gene79310.t1 MTR_2g089170 60.714 56 22 0 54 109 65 120 7.82e-15 70.1
MS.gene79310.t1 MTR_2g078680 50.000 76 35 1 34 109 14 86 8.39e-15 70.5
MS.gene79310.t1 MTR_4g086160 58.929 56 23 0 54 109 96 151 9.21e-15 70.9
MS.gene79310.t1 MTR_4g086190 58.929 56 23 0 54 109 96 151 1.03e-14 70.9
MS.gene79310.t1 MTR_5g082950 60.714 56 22 0 54 109 66 121 1.12e-14 72.0
MS.gene79310.t1 MTR_8g022820 43.038 79 42 1 47 125 117 192 1.24e-14 72.0
MS.gene79310.t1 MTR_8g022820 43.038 79 42 1 47 125 117 192 1.24e-14 72.0
MS.gene79310.t1 MTR_8g022820 43.038 79 42 1 47 125 116 191 1.28e-14 72.0
MS.gene79310.t1 MTR_4g086165 58.929 56 23 0 54 109 82 137 1.51e-14 70.1
MS.gene79310.t1 MTR_4g114570 52.174 69 26 1 54 122 7 68 1.68e-14 70.1
MS.gene79310.t1 MTR_0939s0010 58.929 56 23 0 54 109 65 120 2.41e-14 69.3
MS.gene79310.t1 MTR_5g016750 55.357 56 25 0 54 109 25 80 3.02e-14 68.6
MS.gene79310.t1 MTR_4g010640 57.143 56 24 0 54 109 7 62 3.27e-14 68.9
MS.gene79310.t1 MTR_7g092190 58.929 56 23 0 54 109 30 85 3.61e-14 70.1
MS.gene79310.t1 MTR_3g106290 60.714 56 22 0 54 109 8 63 4.04e-14 68.6
MS.gene79310.t1 MTR_1g074310 57.895 57 23 1 54 109 21 77 5.89e-14 67.0
MS.gene79310.t1 MTR_4g008860 60.714 56 22 0 54 109 8 63 6.16e-14 68.2
MS.gene79310.t1 MTR_2g103700 53.333 60 28 0 54 113 7 66 6.62e-14 67.4
MS.gene79310.t1 MTR_5g009620 50.667 75 27 2 41 109 97 167 8.85e-14 69.3
MS.gene79310.t1 MTR_2g438180 54.839 62 27 1 54 114 14 75 9.35e-14 66.2
MS.gene79310.t1 MTR_4g078710 41.379 87 43 1 54 140 28 106 1.31e-13 67.4
MS.gene79310.t1 MTR_2g015050 43.333 90 46 2 25 109 101 190 1.36e-13 68.2
MS.gene79310.t1 MTR_2g014340 55.357 56 25 0 54 109 19 74 2.06e-13 66.6
MS.gene79310.t1 MTR_1g048610 56.140 57 24 1 54 109 89 145 2.12e-13 67.0
MS.gene79310.t1 MTR_8g099215 46.250 80 37 1 36 109 83 162 2.28e-13 68.2
MS.gene79310.t1 MTR_2g043040 38.889 90 55 0 53 142 18 107 2.61e-13 67.0
MS.gene79310.t1 MTR_1g070070 56.140 57 24 1 54 109 21 77 3.10e-13 65.1
MS.gene79310.t1 MTR_3g090760 40.625 96 48 1 28 123 96 182 4.99e-13 67.4
MS.gene79310.t1 MTR_4g100450 35.833 120 67 2 4 113 95 214 5.44e-13 67.0
MS.gene79310.t1 MTR_1g074230 57.895 57 23 1 54 109 19 75 6.55e-13 63.9
MS.gene79310.t1 MTR_2g014300 57.143 56 24 0 54 109 15 70 9.22e-13 64.3
MS.gene79310.t1 MTR_4g054360 50.000 68 33 1 47 113 117 184 1.27e-12 65.5
MS.gene79310.t1 MTR_4g100420 52.239 67 29 2 48 113 153 217 1.53e-12 65.5
MS.gene79310.t1 MTR_8g069360 53.571 56 26 0 54 109 44 99 1.53e-12 66.2
MS.gene79310.t1 MTR_4g054740 38.542 96 52 2 46 140 89 178 2.86e-12 64.3
MS.gene79310.t1 MTR_2g016730 52.542 59 28 0 51 109 20 78 3.28e-12 64.7
MS.gene79310.t1 MTR_5g085100 44.186 86 38 2 34 119 29 104 3.61e-12 64.3
MS.gene79310.t1 MTR_7g085810 45.946 74 39 1 54 127 30 102 4.29e-12 63.9
MS.gene79310.t1 MTR_5g008790 36.538 104 49 2 54 157 18 104 4.32e-12 62.4
MS.gene79310.t1 MTR_4g088005 50.000 64 31 1 47 109 50 113 4.76e-12 61.2
MS.gene79310.t1 MTR_5g032820 55.357 56 25 0 54 109 46 101 4.81e-12 64.7
MS.gene79310.t1 MTR_7g081805 37.391 115 63 4 3 109 4 117 4.85e-12 63.2
MS.gene79310.t1 MTR_5g008540 47.541 61 32 0 56 116 26 86 5.09e-12 60.5
MS.gene79310.t1 MTR_4g111915 47.458 59 31 0 54 112 53 111 5.49e-12 61.6
MS.gene79310.t1 MTR_2g043020 50.877 57 28 0 53 109 18 74 6.62e-12 62.8
MS.gene79310.t1 MTR_1g090290 51.613 62 27 2 49 109 110 169 6.91e-12 62.4
MS.gene79310.t1 MTR_3g072610 41.667 108 59 2 35 138 6 113 6.97e-12 62.8
MS.gene79310.t1 MTR_7g011630 37.037 108 53 2 16 123 13 105 8.98e-12 63.9
MS.gene79310.t1 MTR_5g085070 49.315 73 27 2 47 119 47 109 1.15e-11 63.2
MS.gene79310.t1 MTR_1g074250 50.820 61 28 1 51 109 16 76 1.28e-11 60.5
MS.gene79310.t1 MTR_5g075570 48.333 60 31 0 50 109 120 179 1.52e-11 62.8
MS.gene79310.t1 MTR_6g041970 38.889 90 42 1 54 143 18 94 1.54e-11 59.3
MS.gene79310.t1 MTR_2g019750 33.065 124 74 2 39 162 37 151 1.67e-11 62.8
MS.gene79310.t1 MTR_8g032610 29.560 159 96 2 56 210 29 175 1.93e-11 62.4
MS.gene79310.t1 MTR_4g054860 45.070 71 38 1 46 115 123 193 1.97e-11 62.4
MS.gene79310.t1 MTR_4g112490 47.458 59 31 0 54 112 53 111 1.97e-11 61.2
MS.gene79310.t1 MTR_8g006840 52.632 57 26 1 54 109 125 181 2.57e-11 60.8
MS.gene79310.t1 MTR_4g119270 44.444 72 37 1 38 109 40 108 2.86e-11 62.0
MS.gene79310.t1 MTR_3g095190 38.168 131 62 2 14 125 112 242 3.01e-11 62.0
MS.gene79310.t1 MTR_7g084370 53.571 56 26 0 54 109 42 97 3.55e-11 61.6
MS.gene79310.t1 MTR_8g085960 39.080 87 49 2 38 124 10 92 3.59e-11 61.2
MS.gene79310.t1 MTR_2g015040 52.632 57 26 1 54 109 63 119 3.95e-11 59.7
MS.gene79310.t1 MTR_4g100380 54.386 57 25 1 54 109 145 201 6.11e-11 60.8
MS.gene79310.t1 MTR_6g012970 47.143 70 37 0 54 123 38 107 6.61e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79310.t1 AT4G25470 50.000 220 97 4 5 216 2 216 4.32e-65 201
MS.gene79310.t1 AT5G51990 51.185 211 82 4 19 216 20 222 3.97e-61 191
MS.gene79310.t1 AT4G25480 50.909 220 95 5 5 216 2 216 1.17e-60 189
MS.gene79310.t1 AT4G25490 51.152 217 90 6 10 216 3 213 7.62e-58 182
MS.gene79310.t1 AT1G12610 67.544 114 37 0 27 140 3 116 6.30e-55 174
MS.gene79310.t1 AT1G63030 46.316 190 91 2 27 216 3 181 1.01e-54 173
MS.gene79310.t1 AT1G63030 46.316 190 91 2 27 216 3 181 1.01e-54 173
MS.gene79310.t1 AT5G25810 55.556 108 45 1 28 135 13 117 2.50e-33 119
MS.gene79310.t1 AT5G11590 55.263 114 47 1 26 135 19 132 7.95e-33 119
MS.gene79310.t1 AT2G44940 61.290 93 36 0 43 135 89 181 1.39e-31 117
MS.gene79310.t1 AT4G32800 58.163 98 35 1 50 141 15 112 1.97e-31 114
MS.gene79310.t1 AT1G01250 61.250 80 31 0 49 128 40 119 7.43e-29 107
MS.gene79310.t1 AT2G35700 45.588 136 71 1 49 184 40 172 1.01e-28 107
MS.gene79310.t1 AT4G16750 49.558 113 52 1 22 129 3 115 3.80e-28 105
MS.gene79310.t1 AT3G16280 62.025 79 30 0 50 128 57 135 6.18e-28 106
MS.gene79310.t1 AT2G36450 37.989 179 93 5 50 216 11 183 9.55e-28 104
MS.gene79310.t1 AT3G16280 62.025 79 30 0 50 128 75 153 9.75e-28 105
MS.gene79310.t1 AT3G60490 54.945 91 40 1 39 128 55 145 2.51e-26 102
MS.gene79310.t1 AT2G25820 61.842 76 29 0 53 128 25 100 2.47e-25 99.0
MS.gene79310.t1 AT5G52020 39.655 174 95 4 50 216 61 231 6.04e-24 95.5
MS.gene79310.t1 AT1G71450 58.537 82 34 0 53 134 23 104 1.34e-23 93.6
MS.gene79310.t1 AT4G13620 52.564 78 36 1 35 111 212 289 2.36e-19 85.5
MS.gene79310.t1 AT1G33760 56.322 87 38 0 54 140 20 106 2.82e-19 82.0
MS.gene79310.t1 AT2G47520 55.556 63 28 0 47 109 43 105 4.90e-19 81.3
MS.gene79310.t1 AT1G77200 59.740 77 31 0 52 128 41 117 6.46e-19 82.4
MS.gene79310.t1 AT1G22190 54.795 73 31 1 39 111 70 140 2.93e-18 80.9
MS.gene79310.t1 AT1G21910 47.826 92 41 1 54 138 50 141 3.66e-18 80.1
MS.gene79310.t1 AT5G21960 47.619 84 44 0 52 135 5 88 6.27e-18 79.3
MS.gene79310.t1 AT4G39780 59.016 61 25 0 49 109 88 148 7.28e-18 80.1
MS.gene79310.t1 AT2G22200 48.780 82 42 0 53 134 70 151 1.63e-17 79.0
MS.gene79310.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.84e-17 76.3
MS.gene79310.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.87e-17 76.6
MS.gene79310.t1 AT1G46768 57.143 63 26 1 49 111 27 88 1.87e-17 76.6
MS.gene79310.t1 AT3G16770 45.455 99 50 2 17 111 38 136 3.32e-17 77.8
MS.gene79310.t1 AT3G11020 57.576 66 28 0 48 113 72 137 3.72e-17 79.0
MS.gene79310.t1 AT1G74930 43.023 86 49 0 54 139 21 106 5.53e-17 76.3
MS.gene79310.t1 AT1G12630 43.243 148 71 3 50 185 15 161 7.27e-17 75.9
MS.gene79310.t1 AT4G06746 53.226 62 29 0 54 115 36 97 1.12e-16 74.3
MS.gene79310.t1 AT5G65130 40.000 120 58 3 7 113 52 170 1.17e-16 77.0
MS.gene79310.t1 AT5G65130 40.000 120 58 3 7 113 54 172 1.23e-16 77.0
MS.gene79310.t1 AT1G78080 59.322 59 24 0 53 111 151 209 1.84e-16 77.0
MS.gene79310.t1 AT4G28140 37.405 131 62 3 53 183 142 252 2.13e-16 76.3
MS.gene79310.t1 AT1G19210 30.811 185 95 5 54 216 12 185 2.20e-16 74.3
MS.gene79310.t1 AT2G20880 48.780 82 40 1 30 111 165 244 3.01e-16 76.3
MS.gene79310.t1 AT2G33710 49.367 79 35 1 49 122 65 143 3.95e-16 74.3
MS.gene79310.t1 AT1G71520 36.090 133 69 4 48 174 8 130 4.17e-16 72.8
MS.gene79310.t1 AT5G67190 41.748 103 53 2 54 152 21 120 5.27e-16 73.6
MS.gene79310.t1 AT2G33710 49.367 79 35 1 49 122 65 143 6.04e-16 74.3
MS.gene79310.t1 AT1G36060 61.404 57 22 0 53 109 142 198 8.13e-16 75.1
MS.gene79310.t1 AT3G50260 37.273 110 57 2 47 156 14 111 8.65e-16 72.0
MS.gene79310.t1 AT4G36900 55.000 60 27 0 50 109 26 85 1.24e-15 72.8
MS.gene79310.t1 AT1G22810 41.935 93 39 2 54 138 14 99 1.48e-15 71.2
MS.gene79310.t1 AT5G05410 59.322 59 24 0 54 112 79 137 2.04e-15 73.9
MS.gene79310.t1 AT5G05410 60.714 56 22 0 54 109 79 134 2.39e-15 73.9
MS.gene79310.t1 AT2G23340 57.143 56 24 0 54 109 28 83 3.57e-15 70.9
MS.gene79310.t1 AT4G31060 44.828 87 45 2 54 137 27 113 5.78e-15 70.5
MS.gene79310.t1 AT5G13330 53.125 64 28 1 50 113 37 98 9.21e-15 70.5
MS.gene79310.t1 AT5G61890 53.125 64 28 1 50 113 88 149 1.14e-14 70.9
MS.gene79310.t1 AT5G44210 50.000 70 28 1 54 123 33 95 1.25e-14 70.1
MS.gene79310.t1 AT3G15210 57.143 63 24 1 47 109 21 80 1.36e-14 70.5
MS.gene79310.t1 AT4G11140 33.607 122 68 2 54 168 87 202 1.40e-14 71.2
MS.gene79310.t1 AT1G15360 58.929 56 23 0 54 109 7 62 1.49e-14 69.7
MS.gene79310.t1 AT1G15360 58.929 56 23 0 54 109 7 62 1.49e-14 69.7
MS.gene79310.t1 AT1G72360 37.209 129 66 3 6 132 28 143 1.85e-14 70.5
MS.gene79310.t1 AT5G07580 49.367 79 37 2 48 125 106 182 2.11e-14 69.7
MS.gene79310.t1 AT3G57600 57.143 56 24 0 54 109 28 83 3.41e-14 70.1
MS.gene79310.t1 AT1G75490 50.000 70 35 0 53 122 41 110 3.87e-14 68.9
MS.gene79310.t1 AT4G27950 56.140 57 25 0 54 110 118 174 3.92e-14 70.5
MS.gene79310.t1 AT5G61600 59.016 61 22 2 50 109 86 144 4.38e-14 69.3
MS.gene79310.t1 AT5G25390 55.357 56 25 0 54 109 7 62 5.58e-14 68.2
MS.gene79310.t1 AT5G47230 45.679 81 42 2 30 109 133 212 6.03e-14 69.7
MS.gene79310.t1 AT5G43410 49.296 71 33 2 40 109 3 71 6.30e-14 66.6
MS.gene79310.t1 AT1G72360 43.023 86 40 1 47 132 18 94 6.76e-14 68.2
MS.gene79310.t1 AT3G61630 48.000 75 33 1 54 128 105 173 7.35e-14 69.7
MS.gene79310.t1 AT4G17490 41.748 103 53 4 12 109 93 193 8.31e-14 68.9
MS.gene79310.t1 AT5G51190 55.556 63 25 2 48 109 68 128 1.12e-13 67.8
MS.gene79310.t1 AT1G72360 35.938 128 71 3 6 132 28 145 1.25e-13 68.2
MS.gene79310.t1 AT1G12890 47.436 78 38 1 32 109 2 76 1.65e-13 67.4
MS.gene79310.t1 AT5G53290 42.529 87 49 1 24 110 96 181 2.03e-13 68.6
MS.gene79310.t1 AT2G40340 33.582 134 76 3 54 174 14 147 2.17e-13 67.8
MS.gene79310.t1 AT2G40340 33.582 134 76 3 54 174 14 147 2.17e-13 67.8
MS.gene79310.t1 AT2G40340 33.582 134 76 3 54 174 14 147 2.17e-13 67.8
MS.gene79310.t1 AT5G25190 58.929 56 23 0 54 109 8 63 3.00e-13 65.9
MS.gene79310.t1 AT3G23230 51.613 62 29 1 54 114 20 81 3.62e-13 64.7
MS.gene79310.t1 AT2G40340 33.582 134 76 3 54 174 79 212 4.32e-13 67.4
MS.gene79310.t1 AT2G40340 33.582 134 76 3 54 174 72 205 5.33e-13 67.4
MS.gene79310.t1 AT1G03800 48.529 68 32 1 42 109 44 108 7.71e-13 65.9
MS.gene79310.t1 AT5G18450 56.140 57 25 0 53 109 33 89 1.41e-12 65.9
MS.gene79310.t1 AT3G20310 52.459 61 29 0 49 109 22 82 1.49e-12 65.1
MS.gene79310.t1 AT2G46310 51.786 56 27 0 54 109 99 154 1.99e-12 65.5
MS.gene79310.t1 AT1G28370 53.571 56 26 0 54 109 20 75 2.36e-12 63.2
MS.gene79310.t1 AT1G28360 57.143 56 24 0 54 109 12 67 2.41e-12 63.5
MS.gene79310.t1 AT2G40340 53.571 56 26 0 54 109 72 127 2.66e-12 65.1
MS.gene79310.t1 AT1G28370 53.571 56 26 0 54 109 58 113 3.14e-12 63.5
MS.gene79310.t1 AT5G19790 53.448 58 27 0 54 111 22 79 3.22e-12 64.3
MS.gene79310.t1 AT4G23750 50.877 57 28 0 54 110 122 178 6.55e-12 63.9
MS.gene79310.t1 AT4G23750 50.877 57 28 0 54 110 122 178 6.55e-12 63.9
MS.gene79310.t1 AT5G47220 54.386 57 25 1 54 109 117 173 7.01e-12 63.2
MS.gene79310.t1 AT1G24590 48.571 70 31 1 54 123 58 122 8.53e-12 63.5
MS.gene79310.t1 AT1G50640 55.357 56 25 0 54 109 28 83 8.93e-12 62.8
MS.gene79310.t1 AT5G13910 45.946 74 36 1 54 127 20 89 1.14e-11 62.0
MS.gene79310.t1 AT1G12980 55.357 56 25 0 54 109 57 112 1.20e-11 63.2
MS.gene79310.t1 AT5G64750 44.286 70 38 1 64 133 195 263 1.25e-11 63.5
MS.gene79310.t1 AT1G77640 46.667 90 42 1 54 137 43 132 3.35e-11 61.2
MS.gene79310.t1 AT5G18560 45.070 71 38 1 39 109 41 110 3.38e-11 62.0
MS.gene79310.t1 AT4G17500 54.386 57 25 1 54 109 148 204 4.21e-11 61.2
MS.gene79310.t1 AT1G28160 52.542 59 28 0 54 112 39 97 4.32e-11 60.8
MS.gene79310.t1 AT5G25390 51.786 56 24 1 54 109 7 59 4.75e-11 60.1

Find 59 sgRNAs with CRISPR-Local

Find 67 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCCCTGCTCGCTTCTT+CGG 0.269830 6.3:-56384647 None:intergenic
TCCTCCCTGCTCGCTTCTTC+GGG 0.291841 6.3:-56384646 None:intergenic
AAGATGATGAGGTATCATTA+TGG 0.358006 6.3:+56385158 MS.gene79310:CDS
TGAGTAAATGGAGTGTGAAT+AGG 0.371267 6.3:-56384561 None:intergenic
AAACATATTTAGCTCCTTTG+TGG 0.389557 6.3:-56385008 None:intergenic
GCCTGAGTTGTGGAGGAATA+TGG 0.395635 6.3:+56385069 MS.gene79310:CDS
GCTAACCGCACCTCAGAATT+CGG 0.412377 6.3:-56384614 None:intergenic
GTGGGCACGGGCTGCCATCT+CGG 0.418086 6.3:-56384795 None:intergenic
ATCGAGGAAGTTGCTGGAAT+AGG 0.421748 6.3:-56384887 None:intergenic
CCAACACGAAAACTAGGATT+TGG 0.430685 6.3:+56384753 MS.gene79310:CDS
CGGGCTGCCATCTCGGCTGT+TGG 0.444907 6.3:-56384788 None:intergenic
GGAAGAGGAACTTAGACAAA+TGG 0.456512 6.3:+56384711 MS.gene79310:CDS
AGCAACCCGAAGAAGCGAGC+AGG 0.462777 6.3:+56384641 MS.gene79310:CDS
TGTAGCCGCAATGGCATTGA+GGG 0.465705 6.3:+56384820 MS.gene79310:CDS
TTGCGGCTACATCGTGGGCA+CGG 0.469329 6.3:-56384808 None:intergenic
CTAGTCATTAAAGTATTGTC+TGG 0.470750 6.3:-56384956 None:intergenic
TGTATAGAGGTGTGAGGAAG+AGG 0.474025 6.3:+56384696 MS.gene79310:CDS
CTCGATAAAAGATATTCAAA+AGG 0.494713 6.3:+56384904 MS.gene79310:CDS
ATTCGGTGATGATGCGTCGA+AGG 0.497022 6.3:-56384597 None:intergenic
ACTCGCCACCCGGTGTATAG+AGG 0.498536 6.3:+56384683 MS.gene79310:CDS
ATTGTCTGGTCTAAAAGCTT+CGG 0.510777 6.3:-56384942 None:intergenic
TGCGGCTACATCGTGGGCAC+GGG 0.512852 6.3:-56384807 None:intergenic
CTGTCTCAATTTCGCAGACT+CGG 0.516981 6.3:+56384853 MS.gene79310:CDS
GGGAGCCCAACACGAAAACT+AGG 0.519478 6.3:+56384747 MS.gene79310:CDS
ATTTAGCTCCTTTGTGGCGA+CGG 0.521039 6.3:-56385002 None:intergenic
GCCATATTCCTCCACAACTC+AGG 0.526273 6.3:-56385070 None:intergenic
GCAACCCGAAGAAGCGAGCA+GGG 0.528945 6.3:+56384642 MS.gene79310:CDS
TTCGGTGATGATGCGTCGAA+GGG 0.542942 6.3:-56384596 None:intergenic
GTCTGGTCTAAAAGCTTCGG+CGG 0.543707 6.3:-56384939 None:intergenic
GAAGAGGAACTTAGACAAAT+GGG 0.551458 6.3:+56384712 MS.gene79310:CDS
TGATACTCAAAGCTATGTGT+GGG 0.551483 6.3:-56385103 None:intergenic
ATGTAGCCGCAATGGCATTG+AGG 0.559262 6.3:+56384819 MS.gene79310:CDS
TGCCATTGCGGCTACATCGT+GGG 0.566254 6.3:-56384813 None:intergenic
CAAATGGGTGTGTGAAATGA+GGG 0.573881 6.3:+56384727 MS.gene79310:CDS
TGCCCACGATGTAGCCGCAA+TGG 0.578037 6.3:+56384811 MS.gene79310:CDS
TTCCTCACACCTCTATACAC+CGG 0.578151 6.3:-56384692 None:intergenic
ATGATACTCAAAGCTATGTG+TGG 0.579353 6.3:-56385104 None:intergenic
TCCTCACACCTCTATACACC+GGG 0.580421 6.3:-56384691 None:intergenic
CGCATCATCACCGAATTCTG+AGG 0.580599 6.3:+56384604 MS.gene79310:CDS
CGAGTCTGCGAAATTGAGAC+AGG 0.581266 6.3:-56384852 None:intergenic
TGCAGCTGCCGTCGCCACAA+AGG 0.581775 6.3:+56384994 MS.gene79310:CDS
AGCAGGGAGGAAGATATTCA+AGG 0.582130 6.3:+56384658 MS.gene79310:CDS
ACAAATGGGTGTGTGAAATG+AGG 0.584388 6.3:+56384726 MS.gene79310:CDS
ACGAAAACTAGGATTTGGCT+AGG 0.596956 6.3:+56384758 MS.gene79310:CDS
ATTCAAGGAAACTCGCCACC+CGG 0.604485 6.3:+56384673 MS.gene79310:CDS
AGGAAGTTGCTGGAATAGGA+AGG 0.611487 6.3:-56384883 None:intergenic
TGTTGAATATGCCTGAGTTG+TGG 0.615732 6.3:+56385059 MS.gene79310:CDS
ATGCCATTGCGGCTACATCG+TGG 0.634571 6.3:-56384814 None:intergenic
TCAATTTCGCAGACTCGGTG+TGG 0.646164 6.3:+56384858 MS.gene79310:CDS
GCGGCCCCTCAATGCCATTG+CGG 0.656772 6.3:-56384825 None:intergenic
ATACTCAAAGCTATGTGTGG+GGG 0.671474 6.3:-56385101 None:intergenic
GATACTCAAAGCTATGTGTG+GGG 0.675772 6.3:-56385102 None:intergenic
CGAAATTGAGACAGGCGTAG+CGG 0.680531 6.3:-56384844 None:intergenic
CATCACCGAATTCTGAGGTG+CGG 0.682218 6.3:+56384609 MS.gene79310:CDS
GTAGCCGCAATGGCATTGAG+GGG 0.688866 6.3:+56384821 MS.gene79310:CDS
TGAATATGCCTGAGTTGTGG+AGG 0.690920 6.3:+56385062 MS.gene79310:CDS
ACCCGAAGAAGCGAGCAGGG+AGG 0.693278 6.3:+56384645 MS.gene79310:CDS
ACCCGGTGTATAGAGGTGTG+AGG 0.705873 6.3:+56384690 MS.gene79310:CDS
TCACACCTCTATACACCGGG+TGG 0.726886 6.3:-56384688 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGAAAAATCTTTTGAGTAAA+TGG - chr6.3:56384576-56384595 None:intergenic 20.0%
! CTCGATAAAAGATATTCAAA+AGG + chr6.3:56384904-56384923 MS.gene79310:CDS 25.0%
!! CTTTTGAATATCTTTTATCG+AGG - chr6.3:56384906-56384925 None:intergenic 25.0%
!!! AATAGATTTTCAAGATGATG+AGG + chr6.3:56385147-56385166 MS.gene79310:CDS 25.0%
! AAACATATTTAGCTCCTTTG+TGG - chr6.3:56385011-56385030 None:intergenic 30.0%
! AAGATGATGAGGTATCATTA+TGG + chr6.3:56385158-56385177 MS.gene79310:CDS 30.0%
!! CTAGTCATTAAAGTATTGTC+TGG - chr6.3:56384959-56384978 None:intergenic 30.0%
ATGATACTCAAAGCTATGTG+TGG - chr6.3:56385107-56385126 None:intergenic 35.0%
ATTGTCTGGTCTAAAAGCTT+CGG - chr6.3:56384945-56384964 None:intergenic 35.0%
GAAGAGGAACTTAGACAAAT+GGG + chr6.3:56384712-56384731 MS.gene79310:CDS 35.0%
TGAGTAAATGGAGTGTGAAT+AGG - chr6.3:56384564-56384583 None:intergenic 35.0%
TGATACTCAAAGCTATGTGT+GGG - chr6.3:56385106-56385125 None:intergenic 35.0%
! GGAGCTAAATATGTTTTGTG+TGG + chr6.3:56385015-56385034 MS.gene79310:CDS 35.0%
!! CAAATCCTAGTTTTCGTGTT+GGG - chr6.3:56384755-56384774 None:intergenic 35.0%
ACAAATGGGTGTGTGAAATG+AGG + chr6.3:56384726-56384745 MS.gene79310:CDS 40.0%
ACGAAAACTAGGATTTGGCT+AGG + chr6.3:56384758-56384777 MS.gene79310:CDS 40.0%
ATACTCAAAGCTATGTGTGG+GGG - chr6.3:56385104-56385123 None:intergenic 40.0%
CAAATGGGTGTGTGAAATGA+GGG + chr6.3:56384727-56384746 MS.gene79310:CDS 40.0%
CCAACACGAAAACTAGGATT+TGG + chr6.3:56384753-56384772 MS.gene79310:CDS 40.0%
GATACTCAAAGCTATGTGTG+GGG - chr6.3:56385105-56385124 None:intergenic 40.0%
GGAAGAGGAACTTAGACAAA+TGG + chr6.3:56384711-56384730 MS.gene79310:CDS 40.0%
TGTTGAATATGCCTGAGTTG+TGG + chr6.3:56385059-56385078 MS.gene79310:CDS 40.0%
! TCTTTTATCGAGGAAGTTGC+TGG - chr6.3:56384896-56384915 None:intergenic 40.0%
!! CCAAATCCTAGTTTTCGTGT+TGG - chr6.3:56384756-56384775 None:intergenic 40.0%
AGCAGGGAGGAAGATATTCA+AGG + chr6.3:56384658-56384677 MS.gene79310:CDS 45.0%
AGGAAGTTGCTGGAATAGGA+AGG - chr6.3:56384886-56384905 None:intergenic 45.0%
ATCGAGGAAGTTGCTGGAAT+AGG - chr6.3:56384890-56384909 None:intergenic 45.0%
CTGTCTCAATTTCGCAGACT+CGG + chr6.3:56384853-56384872 MS.gene79310:CDS 45.0%
TGAATATGCCTGAGTTGTGG+AGG + chr6.3:56385062-56385081 MS.gene79310:CDS 45.0%
TTCCTCACACCTCTATACAC+CGG - chr6.3:56384695-56384714 None:intergenic 45.0%
! AACTTTTCCAACAGCCGAGA+TGG + chr6.3:56384781-56384800 MS.gene79310:CDS 45.0%
! ATTTAGCTCCTTTGTGGCGA+CGG - chr6.3:56385005-56385024 None:intergenic 45.0%
! TGTATAGAGGTGTGAGGAAG+AGG + chr6.3:56384696-56384715 MS.gene79310:CDS 45.0%
ATGTAGCCGCAATGGCATTG+AGG + chr6.3:56384819-56384838 MS.gene79310:CDS 50.0%
ATTCAAGGAAACTCGCCACC+CGG + chr6.3:56384673-56384692 MS.gene79310:CDS 50.0%
CGAAATTGAGACAGGCGTAG+CGG - chr6.3:56384847-56384866 None:intergenic 50.0%
CGAGTCTGCGAAATTGAGAC+AGG - chr6.3:56384855-56384874 None:intergenic 50.0%
CGCATCATCACCGAATTCTG+AGG + chr6.3:56384604-56384623 MS.gene79310:CDS 50.0%
GCCATATTCCTCCACAACTC+AGG - chr6.3:56385073-56385092 None:intergenic 50.0%
GCCTGAGTTGTGGAGGAATA+TGG + chr6.3:56385069-56385088 MS.gene79310:CDS 50.0%
GCTAACCGCACCTCAGAATT+CGG - chr6.3:56384617-56384636 None:intergenic 50.0%
GTCTGGTCTAAAAGCTTCGG+CGG - chr6.3:56384942-56384961 None:intergenic 50.0%
TCCTCACACCTCTATACACC+GGG - chr6.3:56384694-56384713 None:intergenic 50.0%
! ATTCGGTGATGATGCGTCGA+AGG - chr6.3:56384600-56384619 None:intergenic 50.0%
! TGTAGCCGCAATGGCATTGA+GGG + chr6.3:56384820-56384839 MS.gene79310:CDS 50.0%
! TTCGGTGATGATGCGTCGAA+GGG - chr6.3:56384599-56384618 None:intergenic 50.0%
!! CATCACCGAATTCTGAGGTG+CGG + chr6.3:56384609-56384628 MS.gene79310:CDS 50.0%
!! TCAATTTCGCAGACTCGGTG+TGG + chr6.3:56384858-56384877 MS.gene79310:CDS 50.0%
ATGCCATTGCGGCTACATCG+TGG - chr6.3:56384817-56384836 None:intergenic 55.0%
GGGAGCCCAACACGAAAACT+AGG + chr6.3:56384747-56384766 MS.gene79310:CDS 55.0%
TCACACCTCTATACACCGGG+TGG - chr6.3:56384691-56384710 None:intergenic 55.0%
TGCCATTGCGGCTACATCGT+GGG - chr6.3:56384816-56384835 None:intergenic 55.0%
TTCCTCCCTGCTCGCTTCTT+CGG - chr6.3:56384650-56384669 None:intergenic 55.0%
! ACCCGGTGTATAGAGGTGTG+AGG + chr6.3:56384690-56384709 MS.gene79310:CDS 55.0%
! GTAGCCGCAATGGCATTGAG+GGG + chr6.3:56384821-56384840 MS.gene79310:CDS 55.0%
ACTCGCCACCCGGTGTATAG+AGG + chr6.3:56384683-56384702 MS.gene79310:CDS 60.0%
AGCAACCCGAAGAAGCGAGC+AGG + chr6.3:56384641-56384660 MS.gene79310:CDS 60.0%
GCAACCCGAAGAAGCGAGCA+GGG + chr6.3:56384642-56384661 MS.gene79310:CDS 60.0%
TCCTCCCTGCTCGCTTCTTC+GGG - chr6.3:56384649-56384668 None:intergenic 60.0%
TGCCCACGATGTAGCCGCAA+TGG + chr6.3:56384811-56384830 MS.gene79310:CDS 60.0%
TTGCGGCTACATCGTGGGCA+CGG - chr6.3:56384811-56384830 None:intergenic 60.0%
ACCCGAAGAAGCGAGCAGGG+AGG + chr6.3:56384645-56384664 MS.gene79310:CDS 65.0%
GCGGCCCCTCAATGCCATTG+CGG - chr6.3:56384828-56384847 None:intergenic 65.0%
TGCAGCTGCCGTCGCCACAA+AGG + chr6.3:56384994-56385013 MS.gene79310:CDS 65.0%
TGCGGCTACATCGTGGGCAC+GGG - chr6.3:56384810-56384829 None:intergenic 65.0%
CGGGCTGCCATCTCGGCTGT+TGG - chr6.3:56384791-56384810 None:intergenic 70.0%
! GTGGGCACGGGCTGCCATCT+CGG - chr6.3:56384798-56384817 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 56384539 56385189 56384539 ID=MS.gene79310
chr6.3 mRNA 56384539 56385189 56384539 ID=MS.gene79310.t1;Parent=MS.gene79310
chr6.3 exon 56384539 56385189 56384539 ID=MS.gene79310.t1.exon1;Parent=MS.gene79310.t1
chr6.3 CDS 56384539 56385189 56384539 ID=cds.MS.gene79310.t1;Parent=MS.gene79310.t1
Gene Sequence

>MS.gene79310

ATGATTACTACTAACAACTCTTCCTATTCACACTCCATTTACTCAAAAGATTTTTCTCCCTTCGACGCATCATCACCGAATTCTGAGGTGCGGTTAGCATCAAGCAACCCGAAGAAGCGAGCAGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGACAAATGGGTGTGTGAAATGAGGGAGCCCAACACGAAAACTAGGATTTGGCTAGGAACTTTTCCAACAGCCGAGATGGCAGCCCGTGCCCACGATGTAGCCGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAATTTCGCAGACTCGGTGTGGCGCCTTCCTATTCCAGCAACTTCCTCGATAAAAGATATTCAAAAGGCTGCTACAAAAGCCGCCGAAGCTTTTAGACCAGACAATACTTTAATGACTAGCAACATTCACACTGTTGCAGCTGCCGTCGCCACAAAGGAGCTAAATATGTTTTGTGTGGAAGTCGAAGAAGAGCATGAAATGTTGAATATGCCTGAGTTGTGGAGGAATATGGCACTAATGTCCCCCACACATAGCTTTGAGTATCATGAGTATGAAGATATTGTTGCAATAGATTTTCAAGATGATGAGGTATCATTATGGAACTTTTAA

Protein sequence

>MS.gene79310.t1

MITTNNSSYSHSIYSKDFSPFDASSPNSEVRLASSNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNTKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSSIKDIQKAATKAAEAFRPDNTLMTSNIHTVAAAVATKELNMFCVEVEEEHEMLNMPELWRNMALMSPTHSFEYHEYEDIVAIDFQDDEVSLWNF