AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43297

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43297.t1 MTR_6g465850 93.200 250 17 0 1 250 32 281 1.71e-154 431
MS.gene43297.t1 MTR_6g466130 68.000 250 26 2 1 250 35 230 3.52e-101 294
MS.gene43297.t1 MTR_6g466000 55.020 249 64 4 1 248 26 227 7.60e-84 250
MS.gene43297.t1 MTR_6g465690 57.200 250 44 5 1 243 32 225 1.34e-79 240
MS.gene43297.t1 MTR_6g465450 54.098 244 55 4 1 242 23 211 2.28e-75 229
MS.gene43297.t1 MTR_6g465460 51.681 238 56 4 7 242 29 209 1.51e-73 225
MS.gene43297.t1 MTR_6g465430 52.675 243 57 4 2 242 24 210 2.13e-71 219
MS.gene43297.t1 MTR_6g465420 49.587 242 66 3 2 242 24 210 1.64e-70 217
MS.gene43297.t1 MTR_6g465510 51.724 261 59 3 1 248 2 208 2.70e-69 212
MS.gene43297.t1 MTR_6g465530 74.603 126 32 0 2 127 3 128 8.32e-64 198
MS.gene43297.t1 MTR_6g465530 60.769 130 46 2 123 248 70 198 2.04e-36 128
MS.gene43297.t1 MTR_1g101600 48.178 247 71 4 4 250 13 202 5.12e-62 193
MS.gene43297.t1 MTR_6g465990 47.791 249 62 5 1 248 12 193 1.78e-59 187
MS.gene43297.t1 MTR_6g466020 76.768 99 23 0 4 102 15 113 1.65e-49 160
MS.gene43297.t1 MTR_6g466020 51.613 124 36 3 123 245 80 180 9.43e-24 94.7
MS.gene43297.t1 MTR_5g010930 62.931 116 37 1 7 116 24 139 2.41e-45 152
MS.gene43297.t1 MTR_5g010940 61.345 119 40 1 4 116 26 144 1.88e-44 149
MS.gene43297.t1 MTR_5g010910 61.607 112 37 1 11 116 28 139 8.98e-43 145
MS.gene43297.t1 MTR_4g102660 69.159 107 30 2 4 107 16 122 6.84e-42 142
MS.gene43297.t1 MTR_3g110205 60.000 95 38 0 27 121 38 132 4.67e-34 121
MS.gene43297.t1 MTR_7g046260 66.667 81 27 0 26 106 55 135 1.67e-32 119
MS.gene43297.t1 MTR_7g117690 59.341 91 31 1 16 106 18 102 1.98e-32 117
MS.gene43297.t1 MTR_8g006410 67.949 78 25 0 29 106 49 126 4.43e-32 117
MS.gene43297.t1 MTR_5g012910 64.557 79 28 0 28 106 24 102 3.11e-31 114
MS.gene43297.t1 MTR_2g101340 57.000 100 37 2 13 106 16 115 2.17e-30 112
MS.gene43297.t1 MTR_2g085015 60.000 90 34 2 26 113 41 130 2.47e-30 113
MS.gene43297.t1 MTR_8g102800 60.000 85 34 0 22 106 27 111 5.12e-30 112
MS.gene43297.t1 MTR_8g027465 53.000 100 41 2 10 106 20 116 1.42e-29 109
MS.gene43297.t1 MTR_6g088405 62.821 78 29 0 29 106 41 118 1.68e-29 110
MS.gene43297.t1 MTR_8g013860 63.291 79 29 0 28 106 43 121 6.67e-29 108
MS.gene43297.t1 MTR_4g102670 62.025 79 29 1 28 106 11 88 1.40e-28 107
MS.gene43297.t1 MTR_4g100650 62.821 78 29 0 29 106 71 148 9.14e-28 107
MS.gene43297.t1 MTR_6g088425 51.754 114 45 1 10 113 17 130 7.78e-25 99.0
MS.gene43297.t1 MTR_1g006660 60.674 89 31 1 22 106 33 121 3.87e-23 94.7
MS.gene43297.t1 MTR_4g035430 48.454 97 45 1 17 113 22 113 1.35e-22 92.8
MS.gene43297.t1 MTR_1g101550 62.667 75 27 1 32 106 57 130 1.20e-18 82.4
MS.gene43297.t1 MTR_5g008590 34.419 215 101 5 32 246 11 185 1.94e-18 80.9
MS.gene43297.t1 MTR_1g014780 42.105 95 48 1 31 118 37 131 7.50e-18 80.1
MS.gene43297.t1 MTR_2g435590 47.253 91 44 2 6 95 73 160 5.62e-17 78.2
MS.gene43297.t1 MTR_5g083340 60.345 58 23 0 32 89 85 142 7.01e-17 79.7
MS.gene43297.t1 MTR_5g008550 41.667 108 61 1 32 137 21 128 8.99e-17 76.3
MS.gene43297.t1 MTR_7g021010 44.828 87 47 1 25 110 4 90 1.33e-16 74.3
MS.gene43297.t1 MTR_7g020980 53.846 65 30 0 28 92 47 111 1.71e-16 75.1
MS.gene43297.t1 MTR_5g008470 44.048 84 47 0 34 117 77 160 1.78e-16 75.5
MS.gene43297.t1 MTR_1g014820 39.000 100 57 1 31 126 26 125 2.52e-16 76.6
MS.gene43297.t1 MTR_1g014860 38.835 103 56 1 31 126 21 123 2.73e-16 75.5
MS.gene43297.t1 MTR_7g021010 43.373 83 47 0 28 110 47 129 3.81e-16 74.3
MS.gene43297.t1 MTR_3g102100 52.459 61 29 0 32 92 45 105 4.30e-16 73.9
MS.gene43297.t1 MTR_3g105510 43.529 85 48 0 32 116 37 121 5.57e-16 75.1
MS.gene43297.t1 MTR_5g009620 48.352 91 31 4 19 101 97 179 9.30e-16 75.5
MS.gene43297.t1 MTR_2g090235 56.452 62 27 0 31 92 217 278 1.23e-15 75.9
MS.gene43297.t1 MTR_1g019110 53.448 58 27 0 32 89 44 101 1.24e-15 73.2
MS.gene43297.t1 MTR_2g089170 54.839 62 28 0 32 93 65 126 1.44e-15 73.2
MS.gene43297.t1 MTR_7g092190 60.714 56 22 0 32 87 30 85 1.60e-15 74.7
MS.gene43297.t1 MTR_2g105380 45.000 80 44 0 12 91 97 176 1.74e-15 75.5
MS.gene43297.t1 MTR_2g043050 42.353 85 49 0 31 115 18 102 1.91e-15 73.2
MS.gene43297.t1 MTR_1g028560 57.895 57 24 0 32 88 115 171 2.01e-15 75.1
MS.gene43297.t1 MTR_1g014800 48.485 66 34 0 31 96 30 95 2.04e-15 73.2
MS.gene43297.t1 MTR_5g016750 53.571 56 26 0 32 87 25 80 2.13e-15 72.4
MS.gene43297.t1 MTR_3g074130 38.760 129 64 4 13 129 132 257 2.18e-15 74.7
MS.gene43297.t1 MTR_1g087920 44.565 92 49 1 10 99 53 144 2.42e-15 74.3
MS.gene43297.t1 MTR_5g083330 50.685 73 36 0 17 89 20 92 3.70e-15 73.9
MS.gene43297.t1 MTR_5g082950 52.703 74 27 2 16 87 54 121 3.83e-15 73.9
MS.gene43297.t1 MTR_1g090170 53.968 63 29 0 27 89 147 209 3.94e-15 73.9
MS.gene43297.t1 MTR_1g090170 49.333 75 31 1 15 89 229 296 5.97e-15 73.9
MS.gene43297.t1 MTR_8g090350 47.368 76 37 1 31 103 112 187 8.07e-15 72.8
MS.gene43297.t1 MTR_4g086220 58.929 56 23 0 32 87 96 151 9.34e-15 71.6
MS.gene43297.t1 MTR_8g092460 55.932 59 26 0 32 90 145 203 1.00e-14 72.8
MS.gene43297.t1 MTR_7g028925 50.000 66 30 1 31 96 28 90 1.01e-14 68.2
MS.gene43297.t1 MTR_5g062700 57.627 59 25 0 31 89 172 230 1.26e-14 72.8
MS.gene43297.t1 MTR_3g105480 43.373 83 47 0 34 116 33 115 1.85e-14 70.9
MS.gene43297.t1 MTR_2g078680 55.556 63 25 1 25 87 27 86 2.06e-14 70.1
MS.gene43297.t1 MTR_4g086160 57.143 56 24 0 32 87 96 151 2.30e-14 70.5
MS.gene43297.t1 MTR_3g053690 56.250 64 25 1 24 87 22 82 2.47e-14 70.5
MS.gene43297.t1 MTR_4g086165 57.143 56 24 0 32 87 82 137 3.22e-14 69.7
MS.gene43297.t1 MTR_8g022820 48.571 70 36 0 22 91 114 183 3.45e-14 71.6
MS.gene43297.t1 MTR_8g022820 48.571 70 36 0 22 91 114 183 3.45e-14 71.6
MS.gene43297.t1 MTR_4g086190 57.143 56 24 0 32 87 96 151 3.53e-14 70.1
MS.gene43297.t1 MTR_8g022820 48.571 70 36 0 22 91 113 182 3.54e-14 71.6
MS.gene43297.t1 MTR_0939s0010 57.143 56 24 0 32 87 65 120 3.69e-14 69.3
MS.gene43297.t1 MTR_3g072610 50.562 89 40 2 32 116 25 113 3.70e-14 69.7
MS.gene43297.t1 MTR_3g106290 60.714 56 22 0 32 87 8 63 3.92e-14 68.9
MS.gene43297.t1 MTR_3g090760 41.758 91 44 1 8 98 98 179 4.18e-14 71.2
MS.gene43297.t1 MTR_1g060910 41.584 101 37 2 16 114 3 83 6.09e-14 68.2
MS.gene43297.t1 MTR_2g015050 52.174 69 32 1 20 87 122 190 6.48e-14 70.1
MS.gene43297.t1 MTR_4g008860 60.714 56 22 0 32 87 8 63 9.31e-14 68.2
MS.gene43297.t1 MTR_2g043030 38.462 91 56 0 31 121 18 108 1.26e-13 68.2
MS.gene43297.t1 MTR_4g114570 50.000 70 28 1 32 101 7 69 1.35e-13 68.2
MS.gene43297.t1 MTR_2g014340 49.296 71 33 1 17 87 7 74 1.64e-13 67.8
MS.gene43297.t1 MTR_4g010640 55.357 56 25 0 32 87 7 62 2.13e-13 67.4
MS.gene43297.t1 MTR_2g438180 54.839 62 27 1 32 92 14 75 2.71e-13 65.5
MS.gene43297.t1 MTR_1g074310 57.895 57 23 1 32 87 21 77 2.76e-13 65.9
MS.gene43297.t1 MTR_2g103700 53.571 56 26 0 32 87 7 62 5.16e-13 65.9
MS.gene43297.t1 MTR_4g078710 53.571 56 26 0 32 87 28 83 5.52e-13 66.6
MS.gene43297.t1 MTR_1g070070 54.386 57 25 1 32 87 21 77 6.59e-13 64.7
MS.gene43297.t1 MTR_1g048610 54.386 57 25 1 32 87 89 145 1.01e-12 65.9
MS.gene43297.t1 MTR_2g014300 55.357 56 25 0 32 87 15 70 1.40e-12 64.3
MS.gene43297.t1 MTR_1g074230 56.140 57 24 1 32 87 19 75 1.40e-12 63.5
MS.gene43297.t1 MTR_2g016730 45.455 77 41 1 12 87 2 78 1.82e-12 66.2
MS.gene43297.t1 MTR_8g099215 45.570 79 37 1 15 87 84 162 2.09e-12 66.2
MS.gene43297.t1 MTR_4g100420 53.968 63 26 2 26 87 153 213 2.30e-12 65.9
MS.gene43297.t1 MTR_1g074250 52.459 61 27 1 29 87 16 76 2.66e-12 62.8
MS.gene43297.t1 MTR_1g090290 38.095 105 60 4 1 103 85 186 2.81e-12 64.3
MS.gene43297.t1 MTR_5g075570 48.333 60 31 0 28 87 120 179 2.87e-12 65.5
MS.gene43297.t1 MTR_4g100450 41.975 81 46 1 8 87 130 210 3.41e-12 65.5
MS.gene43297.t1 MTR_4g088005 43.836 73 40 1 16 87 41 113 5.32e-12 61.6
MS.gene43297.t1 MTR_2g043040 49.123 57 29 0 31 87 18 74 8.18e-12 63.5
MS.gene43297.t1 MTR_5g085070 47.945 73 28 2 25 97 47 109 1.64e-11 63.2
MS.gene43297.t1 MTR_8g069360 53.571 56 26 0 32 87 44 99 1.70e-11 63.9
MS.gene43297.t1 MTR_5g085100 44.578 83 36 2 15 97 32 104 2.05e-11 62.8
MS.gene43297.t1 MTR_5g008540 50.000 56 28 0 34 89 26 81 3.51e-11 58.9
MS.gene43297.t1 MTR_4g054740 44.928 69 37 1 25 92 90 158 4.14e-11 61.6
MS.gene43297.t1 MTR_4g119270 45.833 72 36 1 16 87 40 108 5.37e-11 62.0
MS.gene43297.t1 MTR_2g043020 47.368 57 30 0 31 87 18 74 6.24e-11 60.5
MS.gene43297.t1 MTR_4g054360 46.377 69 36 1 25 92 117 185 6.39e-11 61.2
MS.gene43297.t1 MTR_5g008790 40.230 87 47 2 32 113 18 104 6.55e-11 59.7
MS.gene43297.t1 MTR_5g032820 50.000 68 32 1 32 99 46 111 7.79e-11 61.6
MS.gene43297.t1 MTR_7g096750 52.632 57 26 1 32 87 20 76 9.66e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43297.t1 AT5G51990 70.339 118 34 1 1 117 22 139 1.52e-52 170
MS.gene43297.t1 AT4G25470 42.169 249 89 6 2 248 21 216 8.79e-52 168
MS.gene43297.t1 AT1G63030 63.158 114 42 0 5 118 3 116 1.19e-50 164
MS.gene43297.t1 AT1G63030 63.158 114 42 0 5 118 3 116 1.19e-50 164
MS.gene43297.t1 AT1G12610 64.348 115 41 0 4 118 2 116 1.98e-50 164
MS.gene43297.t1 AT4G25480 44.398 241 79 5 10 248 29 216 2.03e-48 159
MS.gene43297.t1 AT4G25490 74.074 108 28 0 10 117 26 133 1.04e-46 155
MS.gene43297.t1 AT5G25810 59.574 94 37 1 21 113 24 117 2.97e-34 123
MS.gene43297.t1 AT5G11590 62.791 86 32 0 28 113 47 132 7.56e-33 120
MS.gene43297.t1 AT2G44940 62.366 93 35 0 21 113 89 181 2.39e-31 117
MS.gene43297.t1 AT4G32800 53.763 93 43 0 21 113 8 100 4.79e-31 114
MS.gene43297.t1 AT3G16280 65.823 79 27 0 28 106 57 135 1.33e-30 114
MS.gene43297.t1 AT2G35700 65.000 80 28 0 27 106 40 119 1.38e-30 112
MS.gene43297.t1 AT3G16280 65.823 79 27 0 28 106 75 153 1.42e-30 114
MS.gene43297.t1 AT4G16750 52.727 110 45 2 3 107 8 115 7.12e-30 110
MS.gene43297.t1 AT1G01250 52.830 106 47 1 4 106 14 119 5.21e-29 108
MS.gene43297.t1 AT3G60490 65.333 75 26 0 32 106 71 145 2.77e-28 108
MS.gene43297.t1 AT2G25820 64.474 76 27 0 31 106 25 100 2.39e-27 105
MS.gene43297.t1 AT2G36450 60.494 81 31 1 20 99 3 83 8.83e-26 100
MS.gene43297.t1 AT1G71450 51.852 81 39 0 32 112 24 104 2.42e-21 88.6
MS.gene43297.t1 AT5G52020 43.885 139 56 4 28 151 61 192 8.50e-21 88.2
MS.gene43297.t1 AT1G21910 50.000 92 39 1 32 116 50 141 8.62e-21 88.2
MS.gene43297.t1 AT1G77200 61.039 77 30 0 30 106 41 117 1.22e-20 87.8
MS.gene43297.t1 AT2G47520 43.820 89 46 1 4 92 26 110 3.40e-19 82.4
MS.gene43297.t1 AT1G33760 50.562 89 44 0 32 120 20 108 1.14e-18 81.3
MS.gene43297.t1 AT1G46768 54.545 66 29 1 27 92 27 91 3.13e-18 79.0
MS.gene43297.t1 AT1G46768 54.545 66 29 1 27 92 27 91 3.81e-18 79.0
MS.gene43297.t1 AT1G46768 54.545 66 29 1 27 92 27 91 3.81e-18 79.0
MS.gene43297.t1 AT1G74930 41.860 86 50 0 32 117 21 106 6.96e-18 79.3
MS.gene43297.t1 AT1G12630 61.429 70 26 1 28 97 15 83 5.58e-17 77.0
MS.gene43297.t1 AT4G06746 50.820 61 30 0 32 92 36 96 5.75e-17 75.9
MS.gene43297.t1 AT1G36060 44.762 105 44 3 31 124 142 243 6.70e-17 79.0
MS.gene43297.t1 AT2G22200 50.667 75 35 1 31 103 70 144 8.79e-17 77.8
MS.gene43297.t1 AT4G13620 59.322 59 24 0 31 89 231 289 9.70e-17 79.0
MS.gene43297.t1 AT4G36900 46.914 81 42 1 7 87 6 85 1.04e-16 76.3
MS.gene43297.t1 AT5G21960 45.238 84 46 0 30 113 5 88 1.27e-16 76.6
MS.gene43297.t1 AT2G23340 55.357 56 25 0 32 87 28 83 3.56e-16 74.3
MS.gene43297.t1 AT1G22190 53.425 73 32 1 17 89 70 140 3.66e-16 76.3
MS.gene43297.t1 AT3G50260 49.206 63 32 0 25 87 14 76 4.54e-16 73.6
MS.gene43297.t1 AT5G67190 53.571 56 26 0 32 87 21 76 4.60e-16 74.3
MS.gene43297.t1 AT3G16770 53.521 71 29 1 19 89 70 136 5.05e-16 75.5
MS.gene43297.t1 AT4G39780 57.377 61 26 0 27 87 88 148 6.23e-16 75.5
MS.gene43297.t1 AT1G19210 41.667 84 49 0 32 115 12 95 8.86e-16 73.6
MS.gene43297.t1 AT5G13330 58.065 62 24 1 28 89 37 96 9.52e-16 73.9
MS.gene43297.t1 AT3G57600 60.714 56 22 0 32 87 28 83 1.07e-15 75.1
MS.gene43297.t1 AT2G20880 44.944 89 44 2 31 114 186 274 1.39e-15 75.5
MS.gene43297.t1 AT5G61890 60.000 60 22 1 28 87 88 145 1.90e-15 73.9
MS.gene43297.t1 AT1G71520 41.837 98 52 2 26 119 8 104 2.47e-15 71.2
MS.gene43297.t1 AT4G28140 54.237 59 27 0 31 89 142 200 2.75e-15 73.9
MS.gene43297.t1 AT2G33710 46.341 82 39 1 27 103 65 146 2.76e-15 72.8
MS.gene43297.t1 AT2G33710 46.341 82 39 1 27 103 65 146 2.97e-15 73.2
MS.gene43297.t1 AT5G65130 55.932 59 26 0 31 89 112 170 4.25e-15 73.6
MS.gene43297.t1 AT5G65130 55.932 59 26 0 31 89 110 168 4.46e-15 73.2
MS.gene43297.t1 AT1G78080 57.627 59 25 0 31 89 151 209 7.17e-15 73.2
MS.gene43297.t1 AT3G11020 54.545 66 30 0 26 91 72 137 7.18e-15 73.2
MS.gene43297.t1 AT4G27950 56.140 57 25 0 32 88 118 174 8.27e-15 73.2
MS.gene43297.t1 AT5G05410 57.627 59 25 0 32 90 79 137 8.92e-15 72.8
MS.gene43297.t1 AT5G05410 57.627 59 25 0 32 90 79 137 1.28e-14 72.8
MS.gene43297.t1 AT4G11140 41.379 87 50 1 32 117 87 173 1.62e-14 72.0
MS.gene43297.t1 AT1G75490 40.000 100 59 1 1 99 10 109 2.22e-14 70.1
MS.gene43297.t1 AT3G15210 55.556 63 25 1 25 87 21 80 3.08e-14 70.1
MS.gene43297.t1 AT3G61630 50.633 79 33 2 32 110 105 177 3.67e-14 71.2
MS.gene43297.t1 AT5G44210 47.887 71 30 1 32 102 33 96 5.35e-14 68.9
MS.gene43297.t1 AT1G77640 50.000 90 39 1 32 115 43 132 5.84e-14 69.7
MS.gene43297.t1 AT1G15360 57.143 56 24 0 32 87 7 62 8.12e-14 68.6
MS.gene43297.t1 AT1G15360 57.143 56 24 0 32 87 7 62 8.12e-14 68.6
MS.gene43297.t1 AT1G03800 50.000 68 31 1 20 87 44 108 9.06e-14 69.3
MS.gene43297.t1 AT5G53290 54.386 57 26 0 32 88 125 181 1.37e-13 69.7
MS.gene43297.t1 AT1G22810 41.111 90 50 2 32 119 14 102 1.42e-13 66.6
MS.gene43297.t1 AT5G51190 55.556 63 25 2 26 87 68 128 1.59e-13 68.2
MS.gene43297.t1 AT4G23750 44.706 85 39 1 4 88 102 178 2.25e-13 68.9
MS.gene43297.t1 AT4G23750 44.706 85 39 1 4 88 102 178 2.25e-13 68.9
MS.gene43297.t1 AT5G25390 55.357 56 25 0 32 87 7 62 2.36e-13 67.0
MS.gene43297.t1 AT1G72360 47.619 63 33 0 25 87 18 80 2.51e-13 67.4
MS.gene43297.t1 AT5G25190 53.125 64 30 0 32 95 8 71 3.01e-13 66.6
MS.gene43297.t1 AT5G47230 54.688 64 26 2 25 87 151 212 3.56e-13 68.2
MS.gene43297.t1 AT1G72360 44.000 75 42 0 13 87 55 129 3.57e-13 67.8
MS.gene43297.t1 AT5G64750 48.571 70 35 1 42 111 195 263 4.26e-13 68.6
MS.gene43297.t1 AT5G43410 53.333 60 27 1 29 87 12 71 5.73e-13 64.7
MS.gene43297.t1 AT1G72360 47.619 63 33 0 25 87 69 131 6.14e-13 67.0
MS.gene43297.t1 AT5G61600 57.377 61 23 2 28 87 86 144 8.25e-13 66.6
MS.gene43297.t1 AT4G17490 53.125 64 27 2 25 87 132 193 2.04e-12 65.9
MS.gene43297.t1 AT4G31060 45.455 66 31 1 22 87 22 82 2.11e-12 64.3
MS.gene43297.t1 AT1G28370 51.786 56 27 0 32 87 20 75 2.44e-12 63.9
MS.gene43297.t1 AT1G28360 53.968 63 28 1 32 94 12 73 2.54e-12 64.3
MS.gene43297.t1 AT5G19790 44.444 90 41 3 13 96 5 91 2.71e-12 65.1
MS.gene43297.t1 AT5G18450 53.448 58 27 0 31 88 33 90 2.95e-12 65.5
MS.gene43297.t1 AT2G46310 50.000 70 31 1 32 101 99 164 3.53e-12 65.5
MS.gene43297.t1 AT1G28370 51.786 56 27 0 32 87 58 113 4.65e-12 63.9
MS.gene43297.t1 AT5G07580 48.101 79 38 2 26 103 106 182 5.22e-12 63.5
MS.gene43297.t1 AT3G23230 54.386 57 25 1 32 87 20 76 5.40e-12 62.0
MS.gene43297.t1 AT5G07310 57.812 64 25 1 28 91 90 151 5.59e-12 64.3
MS.gene43297.t1 AT3G20310 50.000 62 31 0 26 87 21 82 9.87e-12 63.5
MS.gene43297.t1 AT5G47220 54.386 57 25 1 32 87 117 173 1.42e-11 63.2
MS.gene43297.t1 AT2G40340 51.786 56 27 0 32 87 14 69 1.84e-11 63.2
MS.gene43297.t1 AT2G40340 51.786 56 27 0 32 87 14 69 1.84e-11 63.2
MS.gene43297.t1 AT2G40340 51.786 56 27 0 32 87 14 69 1.84e-11 63.2
MS.gene43297.t1 AT1G50640 52.381 63 27 1 25 87 24 83 2.42e-11 62.0
MS.gene43297.t1 AT2G40340 51.786 56 27 0 32 87 72 127 2.50e-11 62.8
MS.gene43297.t1 AT1G12980 49.254 67 33 1 32 97 57 123 2.59e-11 63.2
MS.gene43297.t1 AT2G40340 51.786 56 27 0 32 87 72 127 3.15e-11 62.8
MS.gene43297.t1 AT2G40340 51.786 56 27 0 32 87 79 134 3.68e-11 62.8
MS.gene43297.t1 AT2G40350 43.056 72 34 1 32 103 74 138 3.82e-11 60.5
MS.gene43297.t1 AT5G25390 53.571 56 23 1 32 87 7 59 3.84e-11 60.8
MS.gene43297.t1 AT2G40350 43.056 72 34 1 32 103 67 131 4.27e-11 60.1
MS.gene43297.t1 AT1G43160 45.055 91 41 1 32 122 61 142 4.94e-11 60.8

Find 74 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCCCTCCACGCTTCTTC+GGG 0.232766 6.2:-58349949 None:intergenic
AACTCGCCACCCGGTGTATA+GGG 0.262123 6.2:+58349985 MS.gene43297:CDS
TTCCTCCCTCCACGCTTCTT+CGG 0.278890 6.2:-58349950 None:intergenic
GGAGTAGGAACCTAGATAAA+TGG 0.294314 6.2:+58350014 MS.gene43297:CDS
TGAACATTCCAGAGTCATTA+AGG 0.303361 6.2:+58350530 MS.gene43297:CDS
TCCAGAGTCATTAAGGAATA+TGG 0.303946 6.2:+58350537 MS.gene43297:CDS
GGAGCAGCTTATGTTTAGTA+TGG 0.317437 6.2:+58350480 MS.gene43297:CDS
AAACTCGCCACCCGGTGTAT+AGG 0.333432 6.2:+58349984 MS.gene43297:CDS
AAACATAAGCTGCTCCTCTA+TGG 0.367265 6.2:-58350473 None:intergenic
GTCTCGCAAGTAGCGGGAAT+AGG 0.374369 6.2:-58350190 None:intergenic
TTTCACACACCCATTTATCT+AGG 0.375828 6.2:-58350024 None:intergenic
GGAAGAGGAAGAAGAAGAAA+AGG 0.412306 6.2:+58350501 MS.gene43297:CDS
AGCTAACCGCACTTCCTTGT+TGG 0.414598 6.2:-58349918 None:intergenic
TGCCCATGATGTTGCGGCAC+TGG 0.424159 6.2:+58350114 MS.gene43297:CDS
TCTCGCAAGTAGCGGGAATA+GGG 0.426634 6.2:-58350189 None:intergenic
CCGCACTTCCTTGTTGGAAT+CGG 0.432766 6.2:-58349912 None:intergenic
AAATGTTCCTAGCCAAATCT+TGG 0.434109 6.2:-58350068 None:intergenic
GACAAATGATGTCGCGGCAT+TGG 0.450865 6.2:+58350276 MS.gene43297:CDS
ATGTCCCCTACACATAGCTT+GGG 0.453501 6.2:+58350565 MS.gene43297:CDS
TTTGTCCTTACAGTCTTGCC+TGG 0.457404 6.2:-58350259 None:intergenic
GTCTCTGTAGTGGCAGGAAT+AGG 0.461861 6.2:-58350352 None:intergenic
GAGTTTGAACATATTGATCA+TGG 0.465526 6.2:+58350592 MS.gene43297:CDS
ATGCCAGTGCCGCAACATCA+TGG 0.467114 6.2:-58350117 None:intergenic
CTGTCTGAACTTTGCAGACT+CGG 0.472235 6.2:+58350318 MS.gene43297:CDS
TTAGTCGTTAAAGTCTTGTC+TGG 0.474604 6.2:-58350421 None:intergenic
CTGTCTCAACTTTGCAGACT+CGG 0.474674 6.2:+58350156 MS.gene43297:CDS
GAGTAGGAACCTAGATAAAT+GGG 0.479733 6.2:+58350015 MS.gene43297:CDS
TTTCTTGTCTCTGTAGTGGC+AGG 0.484301 6.2:-58350358 None:intergenic
TGCAGCTGCAGAAGCTGCCG+AGG 0.486116 6.2:+58350390 MS.gene43297:CDS
CGAGCTGCCATCTCGGCTGT+TGG 0.487486 6.2:-58350091 None:intergenic
AAGATGATGAGGTGTCACTA+TGG 0.492934 6.2:+58350623 MS.gene43297:CDS
TGTATAGGGGTGTGAGGAGT+AGG 0.504875 6.2:+58349999 MS.gene43297:CDS
TCAGACCAGGCAAGACTGTA+AGG 0.509315 6.2:+58350254 MS.gene43297:CDS
TATATTTCTTGTCTCTGTAG+TGG 0.511538 6.2:-58350362 None:intergenic
GCTTATGTTTAGTATGGAAG+AGG 0.512417 6.2:+58350486 MS.gene43297:CDS
GCCATATTCCTTAATGACTC+TGG 0.522996 6.2:-58350538 None:intergenic
CGAGTCTGCAAAGTTGAGAC+AGG 0.529620 6.2:-58350155 None:intergenic
AATGTCCCCTACACATAGCT+TGG 0.530036 6.2:+58350564 MS.gene43297:CDS
ATGGGCACGAGCTGCCATCT+CGG 0.537633 6.2:-58350098 None:intergenic
TGTAGCTGCCTCCGCCATAG+AGG 0.540970 6.2:+58350459 MS.gene43297:CDS
CATGCCCCAAGCTATGTGTA+GGG 0.545969 6.2:-58350570 None:intergenic
GACGGCTGCTGAAGCTGCTG+AGG 0.548712 6.2:+58350228 MS.gene43297:CDS
TCATGCCCCAAGCTATGTGT+AGG 0.555743 6.2:-58350571 None:intergenic
AACATTTCCAACAGCCGAGA+TGG 0.558177 6.2:+58350084 MS.gene43297:CDS
TGCCAGTGCCGCAACATCAT+GGG 0.563848 6.2:-58350116 None:intergenic
GACAAAAGATATACAAAAGA+CGG 0.564704 6.2:+58350210 MS.gene43297:CDS
GCTGCTGAGGCATTCAGACC+AGG 0.572256 6.2:+58350241 MS.gene43297:CDS
TGGAGGGAGGAAGAAGTTCA+AGG 0.573943 6.2:+58349961 MS.gene43297:CDS
CGAGTCTGCAAAGTTCAGAC+AGG 0.574401 6.2:-58350317 None:intergenic
AGCTCGTGCCCATGATGTTG+CGG 0.581935 6.2:+58350108 MS.gene43297:CDS
CTTGTCTGGTCTGAAAGCCT+CGG 0.583680 6.2:-58350407 None:intergenic
ACTCGCCACCCGGTGTATAG+GGG 0.592111 6.2:+58349986 MS.gene43297:CDS
CCCCGAAGAAGCGTGGAGGG+AGG 0.592417 6.2:+58349948 MS.gene43297:CDS
CCTCCCTCCACGCTTCTTCG+GGG 0.593662 6.2:-58349948 None:intergenic
GTTCAAGGAAACTCGCCACC+CGG 0.597520 6.2:+58349976 MS.gene43297:CDS
GTTGCGGCACTGGCATTGAA+AGG 0.605041 6.2:+58350124 MS.gene43297:CDS
ACCCGGTGTATAGGGGTGTG+AGG 0.607238 6.2:+58349993 MS.gene43297:CDS
TCCTCACACCCCTATACACC+GGG 0.607770 6.2:-58349994 None:intergenic
AAGCTGCTCCTCTATGGCGG+AGG 0.617751 6.2:-58350467 None:intergenic
TGGAGACTTTCAAGATGATG+AGG 0.617970 6.2:+58350612 MS.gene43297:CDS
CTCCTCACACCCCTATACAC+CGG 0.618465 6.2:-58349995 None:intergenic
GTGAGTACCCCGAAGAAGCG+TGG 0.621199 6.2:+58349941 MS.gene43297:CDS
GTCGCGGCATTGGCATTGAG+AGG 0.626845 6.2:+58350286 MS.gene43297:CDS
GTACCCCGAAGAAGCGTGGA+GGG 0.641213 6.2:+58349945 MS.gene43297:CDS
CATAAGCTGCTCCTCTATGG+CGG 0.645350 6.2:-58350470 None:intergenic
AGCGGGAATAGGGAGCGTCA+AGG 0.661826 6.2:-58350179 None:intergenic
TGTAAGGACAAATGATGTCG+CGG 0.663071 6.2:+58350270 MS.gene43297:CDS
AGTACCCCGAAGAAGCGTGG+AGG 0.672866 6.2:+58349944 MS.gene43297:CDS
ATGCCCCAAGCTATGTGTAG+GGG 0.675339 6.2:-58350569 None:intergenic
TGTCCCCTACACATAGCTTG+GGG 0.681420 6.2:+58350566 MS.gene43297:CDS
CCGATTCCAACAAGGAAGTG+CGG 0.682349 6.2:+58349912 MS.gene43297:CDS
TAGGATGTCCGATTCCAACA+AGG 0.683436 6.2:+58349904 None:intergenic
TCACACCCCTATACACCGGG+TGG 0.714638 6.2:-58349991 None:intergenic
GGCAGGAATAGGAAGCAGCG+AGG 0.724435 6.2:-58350341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GACAAAAGATATACAAAAGA+CGG + chr6.2:58350210-58350229 MS.gene43297:CDS 25.0%
CTAACAAAAAGACCAAGATT+TGG + chr6.2:58350056-58350075 MS.gene43297:CDS 30.0%
GAGTTTGAACATATTGATCA+TGG + chr6.2:58350592-58350611 MS.gene43297:CDS 30.0%
TATATTTCTTGTCTCTGTAG+TGG - chr6.2:58350365-58350384 None:intergenic 30.0%
!! CAAATCTTGGTCTTTTTGTT+AGG - chr6.2:58350058-58350077 None:intergenic 30.0%
AAAAAGACCAAGATTTGGCT+AGG + chr6.2:58350061-58350080 MS.gene43297:CDS 35.0%
AAATGTTCCTAGCCAAATCT+TGG - chr6.2:58350071-58350090 None:intergenic 35.0%
GAGTAGGAACCTAGATAAAT+GGG + chr6.2:58350015-58350034 MS.gene43297:CDS 35.0%
GCTTATGTTTAGTATGGAAG+AGG + chr6.2:58350486-58350505 MS.gene43297:CDS 35.0%
TCCAGAGTCATTAAGGAATA+TGG + chr6.2:58350537-58350556 MS.gene43297:CDS 35.0%
TGAACATTCCAGAGTCATTA+AGG + chr6.2:58350530-58350549 MS.gene43297:CDS 35.0%
TTTCACACACCCATTTATCT+AGG - chr6.2:58350027-58350046 None:intergenic 35.0%
! TTAGTCGTTAAAGTCTTGTC+TGG - chr6.2:58350424-58350443 None:intergenic 35.0%
AAACATAAGCTGCTCCTCTA+TGG - chr6.2:58350476-58350495 None:intergenic 40.0%
GCCATATTCCTTAATGACTC+TGG - chr6.2:58350541-58350560 None:intergenic 40.0%
GGAAGAGGAAGAAGAAGAAA+AGG + chr6.2:58350501-58350520 MS.gene43297:CDS 40.0%
GGAGCAGCTTATGTTTAGTA+TGG + chr6.2:58350480-58350499 MS.gene43297:CDS 40.0%
GGAGTAGGAACCTAGATAAA+TGG + chr6.2:58350014-58350033 MS.gene43297:CDS 40.0%
TGGAGACTTTCAAGATGATG+AGG + chr6.2:58350612-58350631 MS.gene43297:CDS 40.0%
TGTAAGGACAAATGATGTCG+CGG + chr6.2:58350270-58350289 MS.gene43297:CDS 40.0%
! ATCTTTTGTCTCGCAAGTAG+CGG - chr6.2:58350200-58350219 None:intergenic 40.0%
!! AAGATGATGAGGTGTCACTA+TGG + chr6.2:58350623-58350642 MS.gene43297:CDS 40.0%
AACATTTCCAACAGCCGAGA+TGG + chr6.2:58350084-58350103 MS.gene43297:CDS 45.0%
AATGTCCCCTACACATAGCT+TGG + chr6.2:58350564-58350583 MS.gene43297:CDS 45.0%
ATGTCCCCTACACATAGCTT+GGG + chr6.2:58350565-58350584 MS.gene43297:CDS 45.0%
CTGTCTCAACTTTGCAGACT+CGG + chr6.2:58350156-58350175 MS.gene43297:CDS 45.0%
CTGTCTGAACTTTGCAGACT+CGG + chr6.2:58350318-58350337 MS.gene43297:CDS 45.0%
TTTCTTGTCTCTGTAGTGGC+AGG - chr6.2:58350361-58350380 None:intergenic 45.0%
TTTGTCCTTACAGTCTTGCC+TGG - chr6.2:58350262-58350281 None:intergenic 45.0%
! TCTTTTGTCTCGCAAGTAGC+GGG - chr6.2:58350199-58350218 None:intergenic 45.0%
AGCTAACCGCACTTCCTTGT+TGG - chr6.2:58349921-58349940 None:intergenic 50.0%
ATGCCCCAAGCTATGTGTAG+GGG - chr6.2:58350572-58350591 None:intergenic 50.0%
CATAAGCTGCTCCTCTATGG+CGG - chr6.2:58350473-58350492 None:intergenic 50.0%
CATGCCCCAAGCTATGTGTA+GGG - chr6.2:58350573-58350592 None:intergenic 50.0%
CCGATTCCAACAAGGAAGTG+CGG + chr6.2:58349912-58349931 MS.gene43297:CDS 50.0%
CCGCACTTCCTTGTTGGAAT+CGG - chr6.2:58349915-58349934 None:intergenic 50.0%
CGAGTCTGCAAAGTTCAGAC+AGG - chr6.2:58350320-58350339 None:intergenic 50.0%
CGAGTCTGCAAAGTTGAGAC+AGG - chr6.2:58350158-58350177 None:intergenic 50.0%
CTTGTCTGGTCTGAAAGCCT+CGG - chr6.2:58350410-58350429 None:intergenic 50.0%
GACAAATGATGTCGCGGCAT+TGG + chr6.2:58350276-58350295 MS.gene43297:CDS 50.0%
GTCTCTGTAGTGGCAGGAAT+AGG - chr6.2:58350355-58350374 None:intergenic 50.0%
TCAGACCAGGCAAGACTGTA+AGG + chr6.2:58350254-58350273 MS.gene43297:CDS 50.0%
TCATGCCCCAAGCTATGTGT+AGG - chr6.2:58350574-58350593 None:intergenic 50.0%
TGGAGGGAGGAAGAAGTTCA+AGG + chr6.2:58349961-58349980 MS.gene43297:CDS 50.0%
TGTCCCCTACACATAGCTTG+GGG + chr6.2:58350566-58350585 MS.gene43297:CDS 50.0%
! TCTCGCAAGTAGCGGGAATA+GGG - chr6.2:58350192-58350211 None:intergenic 50.0%
! TGTATAGGGGTGTGAGGAGT+AGG + chr6.2:58349999-58350018 MS.gene43297:CDS 50.0%
AAACTCGCCACCCGGTGTAT+AGG + chr6.2:58349984-58350003 MS.gene43297:CDS 55.0%
AACTCGCCACCCGGTGTATA+GGG + chr6.2:58349985-58350004 MS.gene43297:CDS 55.0%
AGCTCGTGCCCATGATGTTG+CGG + chr6.2:58350108-58350127 MS.gene43297:CDS 55.0%
ATGCCAGTGCCGCAACATCA+TGG - chr6.2:58350120-58350139 None:intergenic 55.0%
CTCCTCACACCCCTATACAC+CGG - chr6.2:58349998-58350017 None:intergenic 55.0%
GTTCAAGGAAACTCGCCACC+CGG + chr6.2:58349976-58349995 MS.gene43297:CDS 55.0%
TCCTCACACCCCTATACACC+GGG - chr6.2:58349997-58350016 None:intergenic 55.0%
TGCCAGTGCCGCAACATCAT+GGG - chr6.2:58350119-58350138 None:intergenic 55.0%
TTCCTCCCTCCACGCTTCTT+CGG - chr6.2:58349953-58349972 None:intergenic 55.0%
! GTCTCGCAAGTAGCGGGAAT+AGG - chr6.2:58350193-58350212 None:intergenic 55.0%
!! GTTGCGGCACTGGCATTGAA+AGG + chr6.2:58350124-58350143 MS.gene43297:CDS 55.0%
AAGCTGCTCCTCTATGGCGG+AGG - chr6.2:58350470-58350489 None:intergenic 60.0%
ACTCGCCACCCGGTGTATAG+GGG + chr6.2:58349986-58350005 MS.gene43297:CDS 60.0%
ATGGGCACGAGCTGCCATCT+CGG - chr6.2:58350101-58350120 None:intergenic 60.0%
GGCAGGAATAGGAAGCAGCG+AGG - chr6.2:58350344-58350363 None:intergenic 60.0%
GTGAGTACCCCGAAGAAGCG+TGG + chr6.2:58349941-58349960 MS.gene43297:CDS 60.0%
TCACACCCCTATACACCGGG+TGG - chr6.2:58349994-58350013 None:intergenic 60.0%
TCCTCCCTCCACGCTTCTTC+GGG - chr6.2:58349952-58349971 None:intergenic 60.0%
TGCCCATGATGTTGCGGCAC+TGG + chr6.2:58350114-58350133 MS.gene43297:CDS 60.0%
TGTAGCTGCCTCCGCCATAG+AGG + chr6.2:58350459-58350478 MS.gene43297:CDS 60.0%
! ACCCGGTGTATAGGGGTGTG+AGG + chr6.2:58349993-58350012 MS.gene43297:CDS 60.0%
! AGTACCCCGAAGAAGCGTGG+AGG + chr6.2:58349944-58349963 MS.gene43297:CDS 60.0%
! GCTGCTGAGGCATTCAGACC+AGG + chr6.2:58350241-58350260 MS.gene43297:CDS 60.0%
! GTACCCCGAAGAAGCGTGGA+GGG + chr6.2:58349945-58349964 MS.gene43297:CDS 60.0%
!! AGCGGGAATAGGGAGCGTCA+AGG - chr6.2:58350182-58350201 None:intergenic 60.0%
!! GTCGCGGCATTGGCATTGAG+AGG + chr6.2:58350286-58350305 MS.gene43297:CDS 60.0%
CCTCCCTCCACGCTTCTTCG+GGG - chr6.2:58349951-58349970 None:intergenic 65.0%
CGAGCTGCCATCTCGGCTGT+TGG - chr6.2:58350094-58350113 None:intergenic 65.0%
GACGGCTGCTGAAGCTGCTG+AGG + chr6.2:58350228-58350247 MS.gene43297:CDS 65.0%
TGCAGCTGCAGAAGCTGCCG+AGG + chr6.2:58350390-58350409 MS.gene43297:CDS 65.0%
! CCCCGAAGAAGCGTGGAGGG+AGG + chr6.2:58349948-58349967 MS.gene43297:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 58349908 58350660 58349908 ID=MS.gene43297
chr6.2 mRNA 58349908 58350660 58349908 ID=MS.gene43297.t1;Parent=MS.gene43297
chr6.2 exon 58349908 58350660 58349908 ID=MS.gene43297.t1.exon1;Parent=MS.gene43297.t1
chr6.2 CDS 58349908 58350660 58349908 ID=cds.MS.gene43297.t1;Parent=MS.gene43297.t1
Gene Sequence

>MS.gene43297

ATGTCCGATTCCAACAAGGAAGTGCGGTTAGCTGTGAGTACCCCGAAGAAGCGTGGAGGGAGGAAGAAGTTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAGTAGGAACCTAGATAAATGGGTGTGTGAAATAAGACAGCCTAACAAAAAGACCAAGATTTGGCTAGGAACATTTCCAACAGCCGAGATGGCAGCTCGTGCCCATGATGTTGCGGCACTGGCATTGAAAGGTTGCGACGCCTGTCTCAACTTTGCAGACTCGGCCTTGACGCTCCCTATTCCCGCTACTTGCGAGACAAAAGATATACAAAAGACGGCTGCTGAAGCTGCTGAGGCATTCAGACCAGGCAAGACTGTAAGGACAAATGATGTCGCGGCATTGGCATTGAGAGGTCGCAACGCCTGTCTGAACTTTGCAGACTCGGCCTCGCTGCTTCCTATTCCTGCCACTACAGAGACAAGAAATATACAAAATGCAGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACAAGACTTTAACGACTAATGACAGTGACAGCGCTGTAGCTGCCTCCGCCATAGAGGAGCAGCTTATGTTTAGTATGGAAGAGGAAGAAGAAGAAAAGGAAGTGTTGAACATTCCAGAGTCATTAAGGAATATGGCGCTAATGTCCCCTACACATAGCTTGGGGCATGAGTTTGAACATATTGATCATGGAGACTTTCAAGATGATGAGGTGTCACTATGGAGCTTTTCAATATGA
Protein sequence

>MS.gene43297.t1

MSDSNKEVRLAVSTPKKRGGRKKFKETRHPVYRGVRSRNLDKWVCEIRQPNKKTKIWLGTFPTAEMAARAHDVAALALKGCDACLNFADSALTLPIPATCETKDIQKTAAEAAEAFRPGKTVRTNDVAALALRGRNACLNFADSASLLPIPATTETRNIQNAAAEAAEAFRPDKTLTTNDSDSAVAASAIEEQLMFSMEEEEEEKEVLNIPESLRNMALMSPTHSLGHEFEHIDHGDFQDDEVSLWSFSI