AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86607

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86607.t1 MTR_6g465690 90.830 229 16 2 1 226 1 227 6.95e-148 412
MS.gene86607.t1 MTR_6g466000 77.465 213 34 2 27 229 19 227 2.95e-115 328
MS.gene86607.t1 MTR_6g465450 72.477 218 51 3 6 221 2 212 1.39e-105 305
MS.gene86607.t1 MTR_6g465460 77.049 183 40 2 40 221 29 210 1.75e-102 298
MS.gene86607.t1 MTR_6g465420 68.807 218 58 3 6 221 2 211 4.57e-102 296
MS.gene86607.t1 MTR_6g465430 76.757 185 42 1 38 221 27 211 2.50e-101 294
MS.gene86607.t1 MTR_6g466130 74.519 208 47 3 24 229 25 228 3.22e-99 288
MS.gene86607.t1 MTR_6g465530 71.357 199 46 3 37 229 5 198 9.28e-93 270
MS.gene86607.t1 MTR_6g465510 71.154 208 41 3 37 229 5 208 4.48e-92 269
MS.gene86607.t1 MTR_6g465990 65.741 216 40 3 24 229 2 193 3.11e-86 254
MS.gene86607.t1 MTR_1g101600 64.249 193 64 2 37 229 13 200 3.89e-77 231
MS.gene86607.t1 MTR_6g465850 56.746 252 49 5 34 229 32 279 2.52e-72 221
MS.gene86607.t1 MTR_6g466020 58.621 203 60 3 24 226 2 180 3.05e-67 205
MS.gene86607.t1 MTR_5g010930 46.154 208 87 6 40 229 24 224 4.92e-54 173
MS.gene86607.t1 MTR_4g102660 51.196 209 80 9 37 229 16 218 1.87e-51 166
MS.gene86607.t1 MTR_5g010940 41.964 224 105 5 23 229 12 227 9.42e-51 165
MS.gene86607.t1 MTR_5g010910 41.778 225 105 6 23 229 6 222 6.84e-48 157
MS.gene86607.t1 MTR_3g110205 58.333 96 40 0 60 155 38 133 9.38e-34 120
MS.gene86607.t1 MTR_8g006410 66.667 78 26 0 62 139 49 126 1.90e-32 117
MS.gene86607.t1 MTR_7g046260 65.432 81 28 0 59 139 55 135 4.31e-32 117
MS.gene86607.t1 MTR_7g117690 63.750 80 29 0 60 139 23 102 2.97e-31 113
MS.gene86607.t1 MTR_5g012910 63.291 79 29 0 61 139 24 102 1.05e-30 112
MS.gene86607.t1 MTR_2g085015 40.361 166 72 5 59 199 41 204 1.40e-30 113
MS.gene86607.t1 MTR_8g013860 54.639 97 43 1 44 139 25 121 1.55e-29 109
MS.gene86607.t1 MTR_8g102800 54.455 101 46 0 55 155 27 127 6.32e-29 108
MS.gene86607.t1 MTR_2g101340 52.475 101 42 2 45 139 15 115 7.90e-29 107
MS.gene86607.t1 MTR_6g088405 60.256 78 31 0 62 139 41 118 5.73e-28 106
MS.gene86607.t1 MTR_8g027465 53.000 100 41 2 43 139 20 116 1.19e-27 103
MS.gene86607.t1 MTR_4g102670 40.000 175 81 6 61 229 11 167 1.09e-26 101
MS.gene86607.t1 MTR_4g100650 60.256 78 31 0 62 139 71 148 6.07e-26 101
MS.gene86607.t1 MTR_6g088425 49.123 114 48 1 43 146 17 130 7.99e-24 95.5
MS.gene86607.t1 MTR_4g035430 46.429 112 53 2 35 146 9 113 2.67e-23 94.0
MS.gene86607.t1 MTR_1g006660 60.759 79 31 0 61 139 43 121 4.74e-22 91.3
MS.gene86607.t1 MTR_5g008590 36.932 176 99 3 65 228 11 186 3.95e-20 84.7
MS.gene86607.t1 MTR_5g008550 36.364 176 97 6 65 228 21 193 9.08e-20 84.0
MS.gene86607.t1 MTR_1g014780 32.903 155 90 3 34 175 1 154 9.96e-19 82.0
MS.gene86607.t1 MTR_2g435590 38.095 126 76 1 9 134 42 165 1.75e-17 79.0
MS.gene86607.t1 MTR_5g008470 45.238 84 46 0 67 150 77 160 2.15e-17 77.4
MS.gene86607.t1 MTR_1g101550 36.571 175 100 3 65 229 57 230 4.73e-17 77.4
MS.gene86607.t1 MTR_3g102100 58.929 56 23 0 65 120 45 100 9.78e-17 75.5
MS.gene86607.t1 MTR_5g083340 60.345 58 23 0 65 122 85 142 1.11e-16 78.6
MS.gene86607.t1 MTR_1g014820 41.304 92 50 1 64 151 26 117 1.13e-16 77.0
MS.gene86607.t1 MTR_3g105510 44.186 86 44 1 65 146 37 122 1.28e-16 76.6
MS.gene86607.t1 MTR_8g090350 30.233 172 102 5 64 220 112 280 1.59e-16 77.0
MS.gene86607.t1 MTR_1g090170 43.820 89 44 1 60 148 147 229 2.14e-16 77.0
MS.gene86607.t1 MTR_1g014860 31.655 139 82 3 60 187 17 153 2.51e-16 75.1
MS.gene86607.t1 MTR_1g060910 34.911 169 71 6 49 199 3 150 2.91e-16 73.9
MS.gene86607.t1 MTR_2g105380 43.333 90 46 1 53 137 105 194 3.78e-16 76.6
MS.gene86607.t1 MTR_2g043050 44.706 85 47 0 64 148 18 102 4.17e-16 74.7
MS.gene86607.t1 MTR_1g090170 43.820 89 44 1 60 148 234 316 4.67e-16 76.6
MS.gene86607.t1 MTR_7g020980 53.030 66 30 1 58 122 43 108 5.94e-16 73.2
MS.gene86607.t1 MTR_5g062700 57.627 59 25 0 64 122 172 230 6.28e-16 76.3
MS.gene86607.t1 MTR_3g074130 57.627 59 25 0 64 122 149 207 7.00e-16 75.9
MS.gene86607.t1 MTR_1g019110 43.333 90 43 1 65 146 44 133 8.01e-16 73.2
MS.gene86607.t1 MTR_2g090235 57.627 59 25 0 64 122 217 275 1.12e-15 75.5
MS.gene86607.t1 MTR_7g021010 53.030 66 30 1 58 122 43 108 1.32e-15 72.4
MS.gene86607.t1 MTR_1g087920 44.872 78 43 0 55 132 67 144 2.01e-15 73.9
MS.gene86607.t1 MTR_4g086220 58.929 56 23 0 65 120 96 151 3.18e-15 72.4
MS.gene86607.t1 MTR_7g021010 53.333 60 28 0 61 120 8 67 3.32e-15 70.5
MS.gene86607.t1 MTR_1g028560 42.683 82 42 1 65 146 115 191 3.57e-15 73.9
MS.gene86607.t1 MTR_3g105480 44.048 84 43 1 67 146 33 116 4.35e-15 72.0
MS.gene86607.t1 MTR_2g043030 40.659 91 54 0 64 154 18 108 4.51e-15 71.6
MS.gene86607.t1 MTR_1g014800 51.667 60 29 0 64 123 30 89 5.14e-15 71.6
MS.gene86607.t1 MTR_8g092460 53.333 60 28 0 65 124 145 204 5.17e-15 73.2
MS.gene86607.t1 MTR_5g082950 60.714 56 22 0 65 120 66 121 5.59e-15 73.2
MS.gene86607.t1 MTR_5g016750 55.357 56 25 0 65 120 25 80 6.47e-15 70.5
MS.gene86607.t1 MTR_4g086165 42.574 101 47 2 20 120 48 137 6.65e-15 71.2
MS.gene86607.t1 MTR_2g089170 58.929 56 23 0 65 120 65 120 6.82e-15 70.9
MS.gene86607.t1 MTR_3g053690 56.667 60 26 0 61 120 23 82 7.05e-15 71.2
MS.gene86607.t1 MTR_4g086160 57.143 56 24 0 65 120 96 151 8.28e-15 71.2
MS.gene86607.t1 MTR_2g078680 58.929 56 23 0 65 120 31 86 9.38e-15 70.9
MS.gene86607.t1 MTR_5g083330 49.315 73 37 0 50 122 20 92 9.44e-15 72.0
MS.gene86607.t1 MTR_4g086190 57.143 56 24 0 65 120 96 151 1.08e-14 70.9
MS.gene86607.t1 MTR_8g022820 36.792 106 62 2 55 158 113 215 1.67e-14 72.0
MS.gene86607.t1 MTR_8g022820 36.792 106 62 2 55 158 114 216 1.72e-14 72.0
MS.gene86607.t1 MTR_8g022820 36.792 106 62 2 55 158 114 216 1.72e-14 72.0
MS.gene86607.t1 MTR_7g028925 53.333 60 25 1 64 123 28 84 2.26e-14 67.0
MS.gene86607.t1 MTR_0939s0010 57.143 56 24 0 65 120 65 120 2.76e-14 69.3
MS.gene86607.t1 MTR_7g092190 58.929 56 23 0 65 120 30 85 2.88e-14 70.5
MS.gene86607.t1 MTR_1g074310 57.895 57 23 1 65 120 21 77 3.33e-14 67.8
MS.gene86607.t1 MTR_2g043020 27.957 186 114 2 64 229 18 203 7.64e-14 68.2
MS.gene86607.t1 MTR_4g114570 47.887 71 30 1 65 135 7 70 8.30e-14 68.2
MS.gene86607.t1 MTR_2g438180 57.627 59 24 1 65 122 14 72 8.38e-14 66.6
MS.gene86607.t1 MTR_2g015050 49.275 69 34 1 53 120 122 190 9.28e-14 68.9
MS.gene86607.t1 MTR_5g009620 41.304 92 48 1 35 120 76 167 1.03e-13 69.3
MS.gene86607.t1 MTR_3g090760 40.659 91 45 1 41 131 98 179 1.32e-13 69.3
MS.gene86607.t1 MTR_4g010640 55.357 56 25 0 65 120 7 62 1.33e-13 67.8
MS.gene86607.t1 MTR_1g048610 38.462 104 61 2 18 120 44 145 1.43e-13 67.8
MS.gene86607.t1 MTR_4g078710 55.357 56 25 0 65 120 28 83 1.46e-13 67.8
MS.gene86607.t1 MTR_4g100450 43.373 83 46 1 39 120 128 210 1.84e-13 68.6
MS.gene86607.t1 MTR_3g106290 58.929 56 23 0 65 120 8 63 1.98e-13 66.6
MS.gene86607.t1 MTR_4g008860 58.929 56 23 0 65 120 8 63 2.29e-13 66.6
MS.gene86607.t1 MTR_2g014340 55.357 56 25 0 65 120 19 74 2.38e-13 66.6
MS.gene86607.t1 MTR_1g070070 54.386 57 25 1 65 120 21 77 2.66e-13 65.5
MS.gene86607.t1 MTR_2g103700 53.571 56 26 0 65 120 7 62 4.40e-13 65.5
MS.gene86607.t1 MTR_2g043040 40.000 85 51 0 64 148 18 102 5.87e-13 66.2
MS.gene86607.t1 MTR_2g014300 57.143 56 24 0 65 120 15 70 6.01e-13 65.1
MS.gene86607.t1 MTR_1g074230 56.140 57 24 1 65 120 19 75 6.26e-13 64.3
MS.gene86607.t1 MTR_5g085100 40.566 106 47 3 25 130 15 104 8.85e-13 66.2
MS.gene86607.t1 MTR_1g074250 52.459 61 27 1 62 120 16 76 9.45e-13 63.5
MS.gene86607.t1 MTR_4g100420 43.373 83 46 1 39 120 131 213 1.01e-12 66.6
MS.gene86607.t1 MTR_3g072610 40.741 108 60 2 46 149 6 113 1.34e-12 65.1
MS.gene86607.t1 MTR_2g016730 38.614 101 56 2 43 143 2 96 3.19e-12 65.1
MS.gene86607.t1 MTR_8g099215 39.785 93 50 1 34 120 70 162 4.95e-12 64.7
MS.gene86607.t1 MTR_1g090290 50.000 62 28 2 60 120 110 169 6.68e-12 62.8
MS.gene86607.t1 MTR_5g085070 50.000 66 26 1 65 130 51 109 8.50e-12 63.5
MS.gene86607.t1 MTR_6g041970 40.659 91 41 1 65 155 18 95 1.11e-11 59.7
MS.gene86607.t1 MTR_5g075570 46.667 60 32 0 61 120 120 179 1.41e-11 63.2
MS.gene86607.t1 MTR_4g054360 47.692 65 33 1 57 120 116 180 1.60e-11 62.8
MS.gene86607.t1 MTR_8g069360 51.786 56 27 0 65 120 44 99 1.65e-11 63.5
MS.gene86607.t1 MTR_4g111915 45.763 59 32 0 65 123 53 111 1.77e-11 60.5
MS.gene86607.t1 MTR_4g088005 52.632 57 26 1 65 120 57 113 2.49e-11 59.7
MS.gene86607.t1 MTR_6g012970 39.326 89 46 1 32 120 13 93 2.76e-11 62.8
MS.gene86607.t1 MTR_4g054740 35.965 114 63 3 8 120 49 153 3.32e-11 61.6
MS.gene86607.t1 MTR_5g008540 45.902 61 33 0 67 127 26 86 3.66e-11 58.5
MS.gene86607.t1 MTR_5g032820 52.632 57 27 0 65 121 46 102 3.71e-11 62.4
MS.gene86607.t1 MTR_8g006840 50.877 57 27 1 65 120 125 181 3.87e-11 60.8
MS.gene86607.t1 MTR_6g029180 45.833 72 38 1 50 121 19 89 3.94e-11 62.0
MS.gene86607.t1 MTR_4g112490 45.763 59 32 0 65 123 53 111 4.85e-11 60.5
MS.gene86607.t1 MTR_8g032610 49.123 57 29 0 65 121 27 83 5.65e-11 61.6
MS.gene86607.t1 MTR_2g015040 50.877 57 27 1 65 120 63 119 6.48e-11 59.3
MS.gene86607.t1 MTR_7g081805 50.877 57 27 1 65 120 61 117 6.50e-11 60.1
MS.gene86607.t1 MTR_4g100380 54.386 57 25 1 65 120 145 201 7.74e-11 60.8
MS.gene86607.t1 MTR_7g085810 50.000 56 28 0 65 120 30 85 7.86e-11 60.5
MS.gene86607.t1 MTR_7g081815 50.877 57 27 1 65 120 61 117 8.81e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86607.t1 AT4G25470 56.122 196 71 3 42 229 28 216 6.38e-68 208
MS.gene86607.t1 AT4G25480 57.216 194 70 3 43 229 29 216 6.11e-65 201
MS.gene86607.t1 AT5G51990 48.908 229 96 5 14 229 2 222 8.52e-64 198
MS.gene86607.t1 AT4G25490 56.923 195 69 4 43 229 26 213 4.88e-61 191
MS.gene86607.t1 AT1G63030 48.969 194 86 3 36 229 1 181 8.68e-60 186
MS.gene86607.t1 AT1G63030 48.969 194 86 3 36 229 1 181 8.68e-60 186
MS.gene86607.t1 AT1G12610 47.368 209 93 6 36 229 1 207 1.11e-55 177
MS.gene86607.t1 AT5G25810 62.791 86 32 0 61 146 32 117 1.19e-33 120
MS.gene86607.t1 AT5G11590 61.628 86 33 0 61 146 47 132 5.60e-32 117
MS.gene86607.t1 AT2G44940 55.238 105 47 0 54 158 89 193 9.25e-32 117
MS.gene86607.t1 AT4G32800 51.402 107 46 1 52 152 6 112 1.06e-31 115
MS.gene86607.t1 AT2G35700 47.826 138 64 2 60 194 40 172 3.37e-31 114
MS.gene86607.t1 AT1G01250 51.402 107 49 1 36 139 13 119 8.10e-29 107
MS.gene86607.t1 AT3G16280 60.759 79 31 0 61 139 57 135 2.10e-28 107
MS.gene86607.t1 AT4G16750 59.259 81 33 0 60 140 35 115 3.30e-28 105
MS.gene86607.t1 AT3G16280 60.759 79 31 0 61 139 75 153 3.71e-28 107
MS.gene86607.t1 AT2G36450 42.473 186 93 6 53 229 3 183 2.64e-27 103
MS.gene86607.t1 AT2G25820 61.842 76 29 0 64 139 25 100 3.29e-26 101
MS.gene86607.t1 AT3G60490 61.333 75 29 0 65 139 71 145 4.84e-26 102
MS.gene86607.t1 AT5G52020 40.678 177 91 6 61 229 61 231 5.07e-25 98.6
MS.gene86607.t1 AT1G71450 44.915 118 56 1 65 173 24 141 5.72e-23 92.0
MS.gene86607.t1 AT2G47520 45.361 97 49 1 24 120 13 105 1.21e-21 88.2
MS.gene86607.t1 AT1G21910 47.826 92 41 1 65 149 50 141 2.24e-19 83.6
MS.gene86607.t1 AT1G33760 36.257 171 93 3 65 228 20 181 2.42e-19 82.4
MS.gene86607.t1 AT1G77200 47.222 108 56 1 32 139 11 117 2.73e-19 84.0
MS.gene86607.t1 AT4G13620 53.846 78 35 1 46 122 212 289 6.07e-19 84.7
MS.gene86607.t1 AT3G16770 53.846 78 29 1 45 122 66 136 2.79e-18 81.3
MS.gene86607.t1 AT1G46768 57.143 63 26 1 60 122 27 88 4.42e-18 78.2
MS.gene86607.t1 AT1G46768 57.143 63 26 1 60 122 27 88 4.68e-18 78.6
MS.gene86607.t1 AT1G46768 57.143 63 26 1 60 122 27 88 4.68e-18 78.6
MS.gene86607.t1 AT4G39780 57.377 61 26 0 60 120 88 148 1.83e-17 79.3
MS.gene86607.t1 AT1G12630 39.267 191 81 7 61 229 15 192 2.13e-17 77.8
MS.gene86607.t1 AT5G21960 46.429 84 45 0 63 146 5 88 3.20e-17 77.8
MS.gene86607.t1 AT1G22190 59.322 59 24 0 64 122 82 140 3.69e-17 78.2
MS.gene86607.t1 AT3G50260 34.646 127 71 3 65 191 21 135 4.34e-17 75.9
MS.gene86607.t1 AT1G19210 32.895 152 93 3 65 215 12 155 5.07e-17 76.3
MS.gene86607.t1 AT1G74930 43.023 86 49 0 65 150 21 106 5.93e-17 76.6
MS.gene86607.t1 AT2G22200 49.333 75 36 1 64 136 70 144 2.15e-16 76.3
MS.gene86607.t1 AT4G06746 51.613 62 30 0 65 126 36 97 2.32e-16 73.9
MS.gene86607.t1 AT1G78080 57.627 59 25 0 64 122 151 209 4.52e-16 76.3
MS.gene86607.t1 AT4G36900 55.000 60 27 0 61 120 26 85 4.66e-16 73.9
MS.gene86607.t1 AT2G20880 34.586 133 80 2 41 173 165 290 6.86e-16 75.9
MS.gene86607.t1 AT3G11020 54.545 66 30 0 59 124 72 137 8.73e-16 75.5
MS.gene86607.t1 AT2G23340 57.143 56 24 0 65 120 28 83 8.76e-16 72.8
MS.gene86607.t1 AT5G65130 38.095 126 65 3 9 122 44 168 1.01e-15 74.7
MS.gene86607.t1 AT5G67190 55.357 56 25 0 65 120 21 76 1.05e-15 72.8
MS.gene86607.t1 AT5G65130 38.095 126 65 3 9 122 46 170 1.15e-15 74.3
MS.gene86607.t1 AT2G33710 47.500 80 37 1 60 134 65 144 1.48e-15 73.2
MS.gene86607.t1 AT2G33710 46.341 82 39 1 60 136 65 146 1.53e-15 73.6
MS.gene86607.t1 AT1G36060 59.649 57 23 0 64 120 142 198 1.58e-15 74.7
MS.gene86607.t1 AT5G05410 57.627 59 25 0 65 123 79 137 1.95e-15 74.3
MS.gene86607.t1 AT4G28140 45.679 81 39 1 47 122 120 200 2.38e-15 73.9
MS.gene86607.t1 AT5G05410 58.929 56 23 0 65 120 79 134 2.39e-15 74.3
MS.gene86607.t1 AT1G71520 34.965 143 75 5 59 193 8 140 4.57e-15 70.1
MS.gene86607.t1 AT5G13330 50.685 73 31 2 61 133 37 104 7.30e-15 71.2
MS.gene86607.t1 AT5G07580 49.367 79 37 2 59 136 106 182 1.19e-14 70.5
MS.gene86607.t1 AT3G15210 58.929 56 23 0 65 120 25 80 1.20e-14 70.9
MS.gene86607.t1 AT5G61890 55.000 60 25 1 61 120 88 145 1.69e-14 70.9
MS.gene86607.t1 AT3G57600 57.143 56 24 0 65 120 28 83 1.86e-14 71.2
MS.gene86607.t1 AT5G61600 59.016 61 22 2 61 120 86 144 2.76e-14 70.1
MS.gene86607.t1 AT5G44210 57.143 56 24 0 65 120 33 88 3.02e-14 69.3
MS.gene86607.t1 AT3G61630 32.877 146 78 4 65 196 105 244 3.09e-14 70.9
MS.gene86607.t1 AT1G72360 50.000 66 30 1 55 120 18 80 3.10e-14 69.3
MS.gene86607.t1 AT1G72360 38.824 85 52 0 36 120 45 129 3.86e-14 70.1
MS.gene86607.t1 AT1G22810 39.785 93 41 2 65 149 14 99 3.95e-14 67.8
MS.gene86607.t1 AT1G15360 57.143 56 24 0 65 120 7 62 4.41e-14 68.9
MS.gene86607.t1 AT1G15360 57.143 56 24 0 65 120 7 62 4.41e-14 68.9
MS.gene86607.t1 AT5G64750 39.394 99 54 2 75 173 195 287 5.43e-14 70.5
MS.gene86607.t1 AT1G72360 50.000 66 30 1 55 120 69 131 5.71e-14 69.7
MS.gene86607.t1 AT5G51190 53.846 65 29 1 57 120 64 128 6.19e-14 68.9
MS.gene86607.t1 AT4G11140 39.785 93 43 2 65 150 87 173 7.78e-14 69.3
MS.gene86607.t1 AT4G27950 55.357 56 25 0 65 120 118 173 8.03e-14 69.7
MS.gene86607.t1 AT1G03800 37.363 91 57 0 30 120 18 108 8.76e-14 68.9
MS.gene86607.t1 AT1G75490 38.835 103 62 1 34 135 10 112 1.31e-13 67.8
MS.gene86607.t1 AT5G47230 54.688 64 26 2 58 120 151 212 1.42e-13 68.9
MS.gene86607.t1 AT5G43410 53.333 60 27 1 62 120 12 71 1.66e-13 65.9
MS.gene86607.t1 AT5G25390 53.571 56 26 0 65 120 7 62 3.78e-13 66.2
MS.gene86607.t1 AT5G19790 47.436 78 37 2 46 122 5 79 4.33e-13 67.0
MS.gene86607.t1 AT4G31060 50.000 56 28 0 65 120 27 82 5.65e-13 65.5
MS.gene86607.t1 AT5G53290 40.909 88 51 1 34 121 95 181 6.03e-13 67.4
MS.gene86607.t1 AT3G23230 50.000 62 30 1 65 125 20 81 6.11e-13 64.3
MS.gene86607.t1 AT5G25190 57.143 56 24 0 65 120 8 63 9.86e-13 64.7
MS.gene86607.t1 AT3G20310 52.459 61 29 0 60 120 22 82 1.02e-12 65.9
MS.gene86607.t1 AT5G18450 53.448 58 27 0 64 121 33 90 1.17e-12 66.2
MS.gene86607.t1 AT1G28360 57.143 56 24 0 65 120 12 67 1.25e-12 64.7
MS.gene86607.t1 AT4G17490 53.125 64 27 2 58 120 132 193 2.03e-12 65.5
MS.gene86607.t1 AT1G28370 53.571 56 26 0 65 120 20 75 2.18e-12 63.5
MS.gene86607.t1 AT1G77640 48.889 90 40 2 65 148 43 132 3.05e-12 64.3
MS.gene86607.t1 AT4G23750 50.877 57 28 0 65 121 122 178 3.33e-12 65.1
MS.gene86607.t1 AT4G23750 50.877 57 28 0 65 121 122 178 3.33e-12 65.1
MS.gene86607.t1 AT1G28370 53.571 56 26 0 65 120 58 113 3.62e-12 63.5
MS.gene86607.t1 AT1G12890 43.590 78 41 1 43 120 2 76 4.01e-12 63.9
MS.gene86607.t1 AT2G40340 51.786 56 27 0 65 120 14 69 4.06e-12 64.7
MS.gene86607.t1 AT2G40340 51.786 56 27 0 65 120 14 69 4.06e-12 64.7
MS.gene86607.t1 AT2G40340 51.786 56 27 0 65 120 14 69 4.06e-12 64.7
MS.gene86607.t1 AT1G50640 55.357 56 25 0 65 120 28 83 5.08e-12 63.5
MS.gene86607.t1 AT2G46310 31.818 132 83 3 65 193 99 226 5.28e-12 64.3
MS.gene86607.t1 AT2G40340 51.786 56 27 0 65 120 72 127 6.46e-12 64.3
MS.gene86607.t1 AT5G47220 54.386 57 25 1 65 120 117 173 7.20e-12 63.5
MS.gene86607.t1 AT5G61590 50.000 84 39 2 51 133 95 176 7.36e-12 62.8
MS.gene86607.t1 AT2G40340 51.786 56 27 0 65 120 72 127 8.34e-12 63.9
MS.gene86607.t1 AT2G40340 51.786 56 27 0 65 120 79 134 9.15e-12 63.9
MS.gene86607.t1 AT2G40350 44.444 72 33 1 65 136 74 138 3.54e-11 60.1
MS.gene86607.t1 AT3G23240 35.135 111 60 3 15 121 37 139 3.82e-11 61.2
MS.gene86607.t1 AT2G40350 44.444 72 33 1 65 136 67 131 4.13e-11 59.7
MS.gene86607.t1 AT4G17500 54.386 57 25 1 65 120 148 204 5.34e-11 61.2
MS.gene86607.t1 AT5G25390 51.786 56 24 1 65 120 7 59 5.65e-11 60.1
MS.gene86607.t1 AT5G07310 53.125 64 28 1 61 124 90 151 6.42e-11 60.8
MS.gene86607.t1 AT1G12980 53.571 56 26 0 65 120 57 112 8.10e-11 61.2

Find 76 sgRNAs with CRISPR-Local

Find 83 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCCCAGCACGCTTCTT+TGG 0.236811 6.1:-50710178 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6.1:+50710242 MS.gene86607:CDS
ATGTTGCTGCGATGGCATTA+AGG 0.297537 6.1:+50710350 MS.gene86607:CDS
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6.1:+50710597 MS.gene86607:CDS
CAAATCTTAGTCTTCTTGTT+AGG 0.302996 6.1:-50710283 None:intergenic
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6.1:-50710685 None:intergenic
GCCTGAGTGGTGGCAGGTAT+AGG 0.319307 6.1:-50710418 None:intergenic
GACTCGCCACCCGGTATATA+GGG 0.321867 6.1:+50710213 MS.gene86607:CDS
AATGAACTCTCGGAGCAATT+TGG 0.335539 6.1:-50710088 None:intergenic
AGACTCGCCACCCGGTATAT+AGG 0.350439 6.1:+50710212 MS.gene86607:CDS
CCTGAGTGGTGGCAGGTATA+GGG 0.352227 6.1:-50710417 None:intergenic
TGCAAATTCAGAGGGCTCTC+AGG 0.371647 6.1:+50710111 MS.gene86607:CDS
CTCGGAGCAATTTGGAGAAA+AGG 0.393446 6.1:-50710080 None:intergenic
AACTGCCGAGATGGCTGCCC+GGG 0.412127 6.1:+50710321 MS.gene86607:CDS
CTAACAAGAAGACTAAGATT+TGG 0.415274 6.1:+50710284 MS.gene86607:CDS
TCGGAGCAATTTGGAGAAAA+GGG 0.423998 6.1:-50710079 None:intergenic
ATGTGCCCGGGCAGCCATCT+CGG 0.425714 6.1:-50710326 None:intergenic
TGGAGAAAAGGGGTGTGAAT+AGG 0.427612 6.1:-50710068 None:intergenic
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6.1:+50710243 MS.gene86607:CDS
TGCTGGGAGGAAGAAGTTCC+AGG 0.438027 6.1:+50710189 MS.gene86607:CDS
ATGTCTCCTACACATAGCTT+TGG 0.439535 6.1:+50710625 MS.gene86607:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6.1:+50710626 MS.gene86607:CDS
TCGCAGCAACATCATGTGCC+CGG 0.467662 6.1:-50710339 None:intergenic
ATACCGGGTGGCGAGTCTCC+TGG 0.468976 6.1:-50710207 None:intergenic
TTCCTCACACCCCTATATAC+CGG 0.471420 6.1:-50710223 None:intergenic
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6.1:+50710546 MS.gene86607:CDS
CAACTGCCGAGATGGCTGCC+CGG 0.480719 6.1:+50710320 MS.gene86607:CDS
TGTTGCTGCGATGGCATTAA+GGG 0.496379 6.1:+50710351 MS.gene86607:CDS
ACGACTCCAAAGAAGCGTGC+TGG 0.499803 6.1:+50710172 MS.gene86607:CDS
AGCGGCTGCACAGGCCGCAG+AGG 0.499896 6.1:+50710456 MS.gene86607:CDS
TATATAGGGGTGTGAGGAAG+AGG 0.500596 6.1:+50710227 MS.gene86607:CDS
CGACTCCAAAGAAGCGTGCT+GGG 0.504020 6.1:+50710173 MS.gene86607:CDS
CGGGCAGCCATCTCGGCAGT+TGG 0.508200 6.1:-50710319 None:intergenic
GGCCGCAGAGGCTTTCAGAC+CGG 0.508268 6.1:+50710468 MS.gene86607:CDS
AAGATGAAGAGGTATCACTA+TGG 0.512792 6.1:+50710695 MS.gene86607:CDS
GCAAATTCAGAGGGCTCTCA+GGG 0.514657 6.1:+50710112 MS.gene86607:CDS
CGCAGCAACATCATGTGCCC+GGG 0.514902 6.1:-50710338 None:intergenic
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6.1:+50710552 MS.gene86607:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6.1:-50710598 None:intergenic
GGCACATGATGTTGCTGCGA+TGG 0.523213 6.1:+50710342 MS.gene86607:CDS
TTAGTCATCGAAGTCTTGTC+CGG 0.525341 6.1:-50710487 None:intergenic
TGAATTTGCAAATGAACTCT+CGG 0.535909 6.1:-50710098 None:intergenic
TAAATGGGTGTGTGAAATGA+GGG 0.541686 6.1:+50710258 MS.gene86607:CDS
GGCTATTGCCACCTCTGCTA+CGG 0.542428 6.1:+50710522 MS.gene86607:CDS
GGAGTCTGCAAAGTTGAGAC+AGG 0.548191 6.1:-50710383 None:intergenic
TTGTATGGAAGAGGAAGAAG+AGG 0.552825 6.1:+50710561 MS.gene86607:CDS
GTTCCAGGAGACTCGCCACC+CGG 0.558195 6.1:+50710204 MS.gene86607:CDS
AGTTCATTTGCAAATTCAGA+GGG 0.564792 6.1:+50710103 MS.gene86607:CDS
CTGCTACGGAGGAGCAGAGT+AGG 0.566112 6.1:+50710536 MS.gene86607:CDS
CCCTATACCTGCCACCACTC+AGG 0.567783 6.1:+50710417 MS.gene86607:CDS
CTGCTCCTCCGTAGCAGAGG+TGG 0.568749 6.1:-50710530 None:intergenic
AGCTAACCTCACTTCCTCGT+TGG 0.571780 6.1:-50710146 None:intergenic
TATTGCCACCTCTGCTACGG+AGG 0.578389 6.1:+50710525 MS.gene86607:CDS
TCCTCACACCCCTATATACC+GGG 0.585609 6.1:-50710222 None:intergenic
AAGAAGACTAAGATTTGGCT+AGG 0.585612 6.1:+50710289 MS.gene86607:CDS
ATAAATGGGTGTGTGAAATG+AGG 0.586819 6.1:+50710257 MS.gene86607:CDS
GAGTTCATTTGCAAATTCAG+AGG 0.586984 6.1:+50710102 MS.gene86607:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.595940 6.1:+50710590 MS.gene86607:CDS
TCATACCCAAAGCTATGTGT+AGG 0.603291 6.1:-50710631 None:intergenic
CGGAGCAATTTGGAGAAAAG+GGG 0.606698 6.1:-50710078 None:intergenic
CAATTTCCAACGAGGAAGTG+AGG 0.611060 6.1:+50710140 MS.gene86607:CDS
ACTCTGCTCCTCCGTAGCAG+AGG 0.628165 6.1:-50710533 None:intergenic
TGTATGGAAGAGGAAGAAGA+GGG 0.637572 6.1:+50710562 MS.gene86607:CDS
ACTCGCCACCCGGTATATAG+GGG 0.659441 6.1:+50710214 MS.gene86607:CDS
TATGGAAGAGGAAGAAGAGG+GGG 0.662829 6.1:+50710564 MS.gene86607:CDS
ACCCGGTATATAGGGGTGTG+AGG 0.669533 6.1:+50710221 MS.gene86607:CDS
TCAACTTTGCAGACTCCGCG+TGG 0.671197 6.1:+50710389 MS.gene86607:CDS
GTCCGGTCTGAAAGCCTCTG+CGG 0.672100 6.1:-50710470 None:intergenic
GTTGCTGCGATGGCATTAAG+GGG 0.678204 6.1:+50710352 MS.gene86607:CDS
CTCCAAAGAAGCGTGCTGGG+AGG 0.687412 6.1:+50710176 MS.gene86607:CDS
GATGACTAATGACATTGACA+CGG 0.709180 6.1:+50710501 MS.gene86607:CDS
AGGTATAGGGAGACGCCACG+CGG 0.725576 6.1:-50710404 None:intergenic
CAAATTCAGAGGGCTCTCAG+GGG 0.728914 6.1:+50710113 MS.gene86607:CDS
GTATGGAAGAGGAAGAAGAG+GGG 0.730904 6.1:+50710563 MS.gene86607:CDS
TCACACCCCTATATACCGGG+TGG 0.772358 6.1:-50710219 None:intergenic
GGGGATGTCAATTTCCAACG+AGG 0.782366 6.1:+50710132 MS.gene86607:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AGTTCATTTGCAAATTCAGA+GGG + chr6.1:50710103-50710122 MS.gene86607:CDS 30.0%
CTAACAAGAAGACTAAGATT+TGG + chr6.1:50710284-50710303 MS.gene86607:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6.1:50710243-50710262 MS.gene86607:CDS 30.0%
GGCAAAAGATATACAAAAAG+CGG + chr6.1:50710438-50710457 MS.gene86607:CDS 30.0%
TGAATTTGCAAATGAACTCT+CGG - chr6.1:50710101-50710120 None:intergenic 30.0%
! CAAATCTTAGTCTTCTTGTT+AGG - chr6.1:50710286-50710305 None:intergenic 30.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6.1:50710289-50710308 MS.gene86607:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG - chr6.1:50710688-50710707 None:intergenic 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6.1:50710257-50710276 MS.gene86607:CDS 35.0%
GAGTTCATTTGCAAATTCAG+AGG + chr6.1:50710102-50710121 MS.gene86607:CDS 35.0%
GATGACTAATGACATTGACA+CGG + chr6.1:50710501-50710520 MS.gene86607:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6.1:50710242-50710261 MS.gene86607:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6.1:50710258-50710277 MS.gene86607:CDS 35.0%
! TTGTATATCTTTTGCCTGAG+TGG - chr6.1:50710434-50710453 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6.1:50710695-50710714 MS.gene86607:CDS 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG + chr6.1:50710684-50710703 MS.gene86607:CDS 35.0%
AATGAACTCTCGGAGCAATT+TGG - chr6.1:50710091-50710110 None:intergenic 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6.1:50710625-50710644 MS.gene86607:CDS 40.0%
TCATACCCAAAGCTATGTGT+AGG - chr6.1:50710634-50710653 None:intergenic 40.0%
TCGGAGCAATTTGGAGAAAA+GGG - chr6.1:50710082-50710101 None:intergenic 40.0%
TGTATGGAAGAGGAAGAAGA+GGG + chr6.1:50710562-50710581 MS.gene86607:CDS 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6.1:50710626-50710645 MS.gene86607:CDS 40.0%
TTGTATGGAAGAGGAAGAAG+AGG + chr6.1:50710561-50710580 MS.gene86607:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG - chr6.1:50710431-50710450 None:intergenic 40.0%
! TTAGTCATCGAAGTCTTGTC+CGG - chr6.1:50710490-50710509 None:intergenic 40.0%
ATGTTGCTGCGATGGCATTA+AGG + chr6.1:50710350-50710369 MS.gene86607:CDS 45.0%
CAATTTCCAACGAGGAAGTG+AGG + chr6.1:50710140-50710159 MS.gene86607:CDS 45.0%
CGGAGCAATTTGGAGAAAAG+GGG - chr6.1:50710081-50710100 None:intergenic 45.0%
CTCGGAGCAATTTGGAGAAA+AGG - chr6.1:50710083-50710102 None:intergenic 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6.1:50710552-50710571 MS.gene86607:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG + chr6.1:50710597-50710616 MS.gene86607:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG - chr6.1:50710601-50710620 None:intergenic 45.0%
GTATGGAAGAGGAAGAAGAG+GGG + chr6.1:50710563-50710582 MS.gene86607:CDS 45.0%
TATACAAAAAGCGGCTGCAC+AGG + chr6.1:50710447-50710466 MS.gene86607:CDS 45.0%
TATGGAAGAGGAAGAAGAGG+GGG + chr6.1:50710564-50710583 MS.gene86607:CDS 45.0%
TGAACATGCCAGAGTTGTTG+AGG + chr6.1:50710590-50710609 MS.gene86607:CDS 45.0%
TGTTGCTGCGATGGCATTAA+GGG + chr6.1:50710351-50710370 MS.gene86607:CDS 45.0%
TTCCTCACACCCCTATATAC+CGG - chr6.1:50710226-50710245 None:intergenic 45.0%
! TATATAGGGGTGTGAGGAAG+AGG + chr6.1:50710227-50710246 MS.gene86607:CDS 45.0%
! TGGAGAAAAGGGGTGTGAAT+AGG - chr6.1:50710071-50710090 None:intergenic 45.0%
AGCTAACCTCACTTCCTCGT+TGG - chr6.1:50710149-50710168 None:intergenic 50.0%
CAAATTCAGAGGGCTCTCAG+GGG + chr6.1:50710113-50710132 MS.gene86607:CDS 50.0%
GCAAATTCAGAGGGCTCTCA+GGG + chr6.1:50710112-50710131 MS.gene86607:CDS 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6.1:50710546-50710565 MS.gene86607:CDS 50.0%
GGAGTCTGCAAAGTTGAGAC+AGG - chr6.1:50710386-50710405 None:intergenic 50.0%
GGGGATGTCAATTTCCAACG+AGG + chr6.1:50710132-50710151 MS.gene86607:CDS 50.0%
GTTGCTGCGATGGCATTAAG+GGG + chr6.1:50710352-50710371 MS.gene86607:CDS 50.0%
TCCTCACACCCCTATATACC+GGG - chr6.1:50710225-50710244 None:intergenic 50.0%
TGCAAATTCAGAGGGCTCTC+AGG + chr6.1:50710111-50710130 MS.gene86607:CDS 50.0%
! CACTTTTCCAACTGCCGAGA+TGG + chr6.1:50710312-50710331 MS.gene86607:CDS 50.0%
ACTCGCCACCCGGTATATAG+GGG + chr6.1:50710214-50710233 MS.gene86607:CDS 55.0%
AGACTCGCCACCCGGTATAT+AGG + chr6.1:50710212-50710231 MS.gene86607:CDS 55.0%
CCTGAGTGGTGGCAGGTATA+GGG - chr6.1:50710420-50710439 None:intergenic 55.0%
GACTCGCCACCCGGTATATA+GGG + chr6.1:50710213-50710232 MS.gene86607:CDS 55.0%
GGCACATGATGTTGCTGCGA+TGG + chr6.1:50710342-50710361 MS.gene86607:CDS 55.0%
GGCTATTGCCACCTCTGCTA+CGG + chr6.1:50710522-50710541 MS.gene86607:CDS 55.0%
TATTGCCACCTCTGCTACGG+AGG + chr6.1:50710525-50710544 MS.gene86607:CDS 55.0%
TCAACTTTGCAGACTCCGCG+TGG + chr6.1:50710389-50710408 MS.gene86607:CDS 55.0%
TCACACCCCTATATACCGGG+TGG - chr6.1:50710222-50710241 None:intergenic 55.0%
TCGCAGCAACATCATGTGCC+CGG - chr6.1:50710342-50710361 None:intergenic 55.0%
TGCTGGGAGGAAGAAGTTCC+AGG + chr6.1:50710189-50710208 MS.gene86607:CDS 55.0%
TTCCTCCCAGCACGCTTCTT+TGG - chr6.1:50710181-50710200 None:intergenic 55.0%
! ACCCGGTATATAGGGGTGTG+AGG + chr6.1:50710221-50710240 MS.gene86607:CDS 55.0%
! ACGACTCCAAAGAAGCGTGC+TGG + chr6.1:50710172-50710191 MS.gene86607:CDS 55.0%
! CGACTCCAAAGAAGCGTGCT+GGG + chr6.1:50710173-50710192 MS.gene86607:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6.1:50710427-50710446 None:intergenic 55.0%
ACTCTGCTCCTCCGTAGCAG+AGG - chr6.1:50710536-50710555 None:intergenic 60.0%
AGGTATAGGGAGACGCCACG+CGG - chr6.1:50710407-50710426 None:intergenic 60.0%
CCCTATACCTGCCACCACTC+AGG + chr6.1:50710417-50710436 MS.gene86607:CDS 60.0%
CGCAGCAACATCATGTGCCC+GGG - chr6.1:50710341-50710360 None:intergenic 60.0%
CTGCTACGGAGGAGCAGAGT+AGG + chr6.1:50710536-50710555 MS.gene86607:CDS 60.0%
GCCTGAGTGGTGGCAGGTAT+AGG - chr6.1:50710421-50710440 None:intergenic 60.0%
GTCCGGTCTGAAAGCCTCTG+CGG - chr6.1:50710473-50710492 None:intergenic 60.0%
! CTCCAAAGAAGCGTGCTGGG+AGG + chr6.1:50710176-50710195 MS.gene86607:CDS 60.0%
AACTGCCGAGATGGCTGCCC+GGG + chr6.1:50710321-50710340 MS.gene86607:CDS 65.0%
ATACCGGGTGGCGAGTCTCC+TGG - chr6.1:50710210-50710229 None:intergenic 65.0%
ATGTGCCCGGGCAGCCATCT+CGG - chr6.1:50710329-50710348 None:intergenic 65.0%
CAACTGCCGAGATGGCTGCC+CGG + chr6.1:50710320-50710339 MS.gene86607:CDS 65.0%
CTGCTCCTCCGTAGCAGAGG+TGG - chr6.1:50710533-50710552 None:intergenic 65.0%
GGCCGCAGAGGCTTTCAGAC+CGG + chr6.1:50710468-50710487 MS.gene86607:CDS 65.0%
GTTCCAGGAGACTCGCCACC+CGG + chr6.1:50710204-50710223 MS.gene86607:CDS 65.0%
CGGGCAGCCATCTCGGCAGT+TGG - chr6.1:50710322-50710341 None:intergenic 70.0%
AGCGGCTGCACAGGCCGCAG+AGG + chr6.1:50710456-50710475 MS.gene86607:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 50710037 50710726 50710037 ID=MS.gene86607
chr6.1 mRNA 50710037 50710726 50710037 ID=MS.gene86607.t1;Parent=MS.gene86607
chr6.1 exon 50710037 50710726 50710037 ID=MS.gene86607.t1.exon1;Parent=MS.gene86607.t1
chr6.1 CDS 50710037 50710726 50710037 ID=cds.MS.gene86607.t1;Parent=MS.gene86607.t1
Gene Sequence

>MS.gene86607

ATGGATATGTTAACAATAACAACGAACAACTCCTATTCACACCCCTTTTCTCCAAATTGCTCCGAGAGTTCATTTGCAAATTCAGAGGGCTCTCAGGGGATGTCAATTTCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCTGGGAGGAAGAAGTTCCAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCTGCCCGGGCACATGATGTTGCTGCGATGGCATTAAGGGGACGCTACGCCTGTCTCAACTTTGCAGACTCCGCGTGGCGTCTCCCTATACCTGCCACCACTCAGGCAAAAGATATACAAAAAGCGGCTGCACAGGCCGCAGAGGCTTTCAGACCGGACAAGACTTCGATGACTAATGACATTGACACGGCTATTGCCACCTCTGCTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAAGAGGGGGCGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATGATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA
Protein sequence

>MS.gene86607.t1

MDMLTITTNNSYSHPFSPNCSESSFANSEGSQGMSISNEEVRLAATTPKKRAGRKKFQETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWRLPIPATTQAKDIQKAAAQAAEAFRPDKTSMTNDIDTAIATSATEEQSRTCMEEEEEGAMNMPELLRNMALMSPTHSFGYDEYEDIHVQDFPDFQDEEVSLWNY