AlfalfaGEDB | MS.gene86594

M. sativa cultivar XinJiangDaYe / MS.gene86594

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00847.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86594.t1	AGR40694.1	89.4	216	22	1	1	215	1	216	2.90E-102	381.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86594.t1	Q9SYS6	52.3	220	86	5	7	215	5	216	1.1e-44	181.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86594.t1	S5LSR4	89.4	216	22	1	1	215	1	216	2.1e-102	381.3

TFs/TRs:

Gene ID	Type	Classification
MS.gene86594.t1	TF	AP2/ERF-ERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene86597	MS.gene86594	PPI
MS.gene86594	MS.gene86596	PPI
MS.gene86594	MS.gene62760	PPI
MS.gene86594	MS.gene30844	PPI
MS.gene86594	MS.gene79314	PPI
MS.gene86594	MS.gene41386	PPI
MS.gene43298	MS.gene86594	PPI
MS.gene86594	MS.gene79320	PPI
MS.gene86594	MS.gene38658	PPI
MS.gene86594	MS.gene79316	PPI
MS.gene86594	MS.gene79328	PPI
MS.gene30841	MS.gene86594	PPI
MS.gene86594	MS.gene79318	PPI
MS.gene86610	MS.gene86594	PPI
MS.gene86594	MS.gene79321	PPI
MS.gene86594	MS.gene86599	PPI
MS.gene86594	MS.gene30845	PPI
MS.gene86613	MS.gene86594	PPI
MS.gene86594	MS.gene49040	PPI
MS.gene86594	MS.gene86612	PPI
MS.gene86594	MS.gene86591	PPI
MS.gene86594	MS.gene49249	PPI
MS.gene86594	MS.gene49253	PPI
MS.gene86594	MS.gene43298	PPI
MS.gene30851	MS.gene86594	PPI
MS.gene49255	MS.gene86594	PPI
MS.gene30848	MS.gene86594	PPI
MS.gene86594	MS.gene86595	PPI
MS.gene86608	MS.gene86594	PPI
MS.gene86615	MS.gene86594	PPI
MS.gene86594	MS.gene79310	PPI
MS.gene86594	MS.gene62759	PPI
MS.gene86594	MS.gene86608	PPI
MS.gene86594	MS.gene86618	PPI
MS.gene86594	MS.gene79307	PPI
MS.gene86594	MS.gene49251	PPI
MS.gene30842	MS.gene86594	PPI
MS.gene79315	MS.gene86594	PPI
MS.gene86594	MS.gene86607	PPI
MS.gene49250	MS.gene86594	PPI
MS.gene49249	MS.gene86594	PPI
MS.gene86599	MS.gene86594	PPI
MS.gene86594	MS.gene49252	PPI
MS.gene86594	MS.gene30840	PPI
MS.gene30852	MS.gene86594	PPI
MS.gene79322	MS.gene86594	PPI
MS.gene86594	MS.gene86588	PPI
MS.gene86594	MS.gene43297	PPI
MS.gene79326	MS.gene86594	PPI
MS.gene79327	MS.gene86594	PPI
MS.gene86618	MS.gene86594	PPI
MS.gene86594	MS.gene86611	PPI
MS.gene006341	MS.gene86594	PPI
MS.gene86594	MS.gene86601	PPI
MS.gene86594	MS.gene34447	PPI
MS.gene86594	MS.gene62758	PPI
MS.gene86594	MS.gene49250	PPI
MS.gene86611	MS.gene86594	PPI
MS.gene34447	MS.gene86594	PPI
MS.gene86594	MS.gene30853	PPI
MS.gene86594	MS.gene79330	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86594.t1	MTR_6g465430	88.571	210	23	1	1	209	1	210	4.26e-128	361
MS.gene86594.t1	MTR_6g465460	87.560	209	26	0	1	209	1	209	7.73e-127	359
MS.gene86594.t1	MTR_6g465420	85.782	211	27	2	1	209	1	210	1.63e-125	355
MS.gene86594.t1	MTR_6g465450	82.938	211	34	1	1	209	1	211	1.79e-123	349
MS.gene86594.t1	MTR_6g465690	67.890	218	50	5	4	207	5	216	5.69e-94	275
MS.gene86594.t1	MTR_6g466000	66.500	200	54	4	27	215	30	227	3.53e-93	272
MS.gene86594.t1	MTR_6g465510	71.707	205	40	2	27	215	6	208	1.86e-91	267
MS.gene86594.t1	MTR_6g465530	69.849	199	50	4	24	215	3	198	6.78e-91	265
MS.gene86594.t1	MTR_6g466130	68.750	192	55	2	27	215	39	228	1.44e-83	248
MS.gene86594.t1	MTR_1g101600	57.576	198	74	3	22	215	9	200	2.01e-66	203
MS.gene86594.t1	MTR_6g465990	54.000	200	59	5	27	215	16	193	1.47e-63	196
MS.gene86594.t1	MTR_6g465850	49.398	249	67	4	24	215	33	279	2.08e-63	198
MS.gene86594.t1	MTR_6g466020	54.891	184	62	4	29	212	18	180	1.45e-54	172
MS.gene86594.t1	MTR_5g010930	46.798	203	90	4	29	215	24	224	3.30e-52	168
MS.gene86594.t1	MTR_5g010940	44.889	225	102	6	7	215	9	227	2.85e-50	163
MS.gene86594.t1	MTR_4g102660	52.511	219	84	10	14	215	3	218	4.76e-49	159
MS.gene86594.t1	MTR_5g010910	45.813	203	89	6	30	215	24	222	2.73e-47	155
MS.gene86594.t1	MTR_3g110205	54.455	101	46	0	43	143	32	132	5.10e-31	112
MS.gene86594.t1	MTR_8g006410	57.143	91	39	0	38	128	36	126	6.07e-31	113
MS.gene86594.t1	MTR_7g046260	54.737	95	43	0	34	128	41	135	4.44e-29	108
MS.gene86594.t1	MTR_7g117690	61.250	80	31	0	49	128	23	102	4.68e-29	107
MS.gene86594.t1	MTR_2g085015	42.197	173	90	4	6	174	5	171	1.03e-28	107
MS.gene86594.t1	MTR_5g012910	60.759	79	31	0	50	128	24	102	3.45e-28	105
MS.gene86594.t1	MTR_8g027465	50.459	109	47	3	24	128	11	116	1.30e-27	103
MS.gene86594.t1	MTR_8g013860	57.292	96	41	0	50	145	43	138	1.56e-26	101
MS.gene86594.t1	MTR_2g101340	45.926	135	61	2	21	149	8	136	3.10e-26	100
MS.gene86594.t1	MTR_8g102800	53.846	104	46	1	38	141	23	124	7.78e-26	100
MS.gene86594.t1	MTR_6g088405	58.974	78	32	0	51	128	41	118	2.68e-25	98.6
MS.gene86594.t1	MTR_4g100650	60.256	78	31	0	51	128	71	148	2.31e-24	97.1
MS.gene86594.t1	MTR_6g088425	50.000	126	52	2	20	135	6	130	2.11e-23	94.0
MS.gene86594.t1	MTR_4g102670	54.430	79	35	1	50	128	11	88	1.34e-22	90.1
MS.gene86594.t1	MTR_4g035430	51.546	97	42	1	39	135	22	113	1.79e-22	91.3
MS.gene86594.t1	MTR_5g008590	36.723	177	95	3	54	214	11	186	3.53e-19	81.6
MS.gene86594.t1	MTR_1g006660	58.228	79	33	0	50	128	43	121	4.77e-19	82.8
MS.gene86594.t1	MTR_5g008550	48.837	86	44	0	54	139	21	106	4.38e-16	73.6
MS.gene86594.t1	MTR_1g014780	40.000	95	50	1	53	140	37	131	5.81e-16	74.3
MS.gene86594.t1	MTR_1g060910	36.628	172	63	7	38	187	3	150	6.50e-16	72.8
MS.gene86594.t1	MTR_5g083330	50.685	73	36	0	39	111	20	92	3.07e-15	73.2
MS.gene86594.t1	MTR_1g014820	41.304	92	50	1	53	140	26	117	3.32e-15	72.8
MS.gene86594.t1	MTR_2g435590	51.515	66	32	0	47	112	89	154	3.52e-15	72.4
MS.gene86594.t1	MTR_5g008470	42.857	84	48	0	56	139	77	160	3.68e-15	70.9
MS.gene86594.t1	MTR_3g105510	48.571	70	36	0	54	123	37	106	8.22e-15	71.2
MS.gene86594.t1	MTR_1g087920	38.532	109	62	3	7	111	27	134	9.35e-15	72.0
MS.gene86594.t1	MTR_5g083340	60.345	58	23	0	54	111	85	142	9.70e-15	72.4
MS.gene86594.t1	MTR_3g074130	50.000	74	35	1	38	111	136	207	1.08e-14	72.0
MS.gene86594.t1	MTR_1g014860	37.374	99	55	1	49	140	17	115	1.51e-14	70.1
MS.gene86594.t1	MTR_8g090350	33.113	151	89	5	53	195	112	258	2.79e-14	70.5
MS.gene86594.t1	MTR_3g102100	55.172	58	26	0	54	111	45	102	2.80e-14	68.6
MS.gene86594.t1	MTR_1g090170	52.381	63	30	0	49	111	147	209	3.13e-14	70.5
MS.gene86594.t1	MTR_5g062700	55.932	59	26	0	53	111	172	230	4.24e-14	70.5
MS.gene86594.t1	MTR_2g043030	26.842	190	107	4	53	215	18	202	4.29e-14	68.6
MS.gene86594.t1	MTR_7g021010	41.573	89	51	1	45	132	2	90	5.06e-14	67.0
MS.gene86594.t1	MTR_1g090170	52.381	63	30	0	49	111	234	296	5.99e-14	70.1
MS.gene86594.t1	MTR_2g090235	55.932	59	26	0	53	111	217	275	6.11e-14	70.1
MS.gene86594.t1	MTR_2g043050	42.353	85	49	0	53	137	18	102	8.90e-14	67.8
MS.gene86594.t1	MTR_2g105380	39.796	98	56	1	12	109	78	172	9.57e-14	69.3
MS.gene86594.t1	MTR_1g014800	40.000	90	47	1	53	135	30	119	9.69e-14	67.8
MS.gene86594.t1	MTR_1g019110	50.000	62	31	0	54	115	44	105	1.76e-13	66.6
MS.gene86594.t1	MTR_7g020980	48.438	64	33	0	50	113	47	110	1.83e-13	66.2
MS.gene86594.t1	MTR_1g028560	42.683	82	42	1	54	135	115	191	2.11e-13	68.2
MS.gene86594.t1	MTR_3g105480	48.529	68	35	0	56	123	33	100	2.18e-13	67.0
MS.gene86594.t1	MTR_7g021010	41.573	89	51	1	45	132	41	129	2.85e-13	65.9
MS.gene86594.t1	MTR_8g092460	51.667	60	29	0	54	113	145	204	4.56e-13	67.0
MS.gene86594.t1	MTR_2g089170	58.929	56	23	0	54	109	65	120	5.41e-13	65.5
MS.gene86594.t1	MTR_4g086220	57.143	56	24	0	54	109	96	151	5.45e-13	66.2
MS.gene86594.t1	MTR_1g101550	40.426	141	72	3	54	183	57	196	5.53e-13	65.9
MS.gene86594.t1	MTR_5g016750	51.724	58	28	0	54	111	25	82	1.20e-12	64.3
MS.gene86594.t1	MTR_4g086190	55.357	56	25	0	54	109	96	151	1.58e-12	64.7
MS.gene86594.t1	MTR_7g028925	51.667	60	26	1	53	112	28	84	1.70e-12	61.6
MS.gene86594.t1	MTR_4g086160	55.357	56	25	0	54	109	96	151	1.80e-12	64.7
MS.gene86594.t1	MTR_8g022820	40.506	79	44	1	47	125	116	191	1.89e-12	65.9
MS.gene86594.t1	MTR_0939s0010	57.143	56	24	0	54	109	65	120	1.98e-12	63.9
MS.gene86594.t1	MTR_8g022820	40.506	79	44	1	47	125	117	192	1.99e-12	65.9
MS.gene86594.t1	MTR_8g022820	40.506	79	44	1	47	125	117	192	1.99e-12	65.9
MS.gene86594.t1	MTR_3g053690	53.846	65	27	1	45	109	21	82	2.15e-12	64.3
MS.gene86594.t1	MTR_5g082950	57.143	56	24	0	54	109	66	121	2.15e-12	65.5
MS.gene86594.t1	MTR_4g086165	55.357	56	25	0	54	109	82	137	2.38e-12	63.9
MS.gene86594.t1	MTR_4g114570	49.275	69	28	1	54	122	7	68	2.72e-12	63.9
MS.gene86594.t1	MTR_7g092190	55.357	56	25	0	54	109	30	85	4.22e-12	64.3
MS.gene86594.t1	MTR_2g078680	47.368	76	37	1	34	109	14	86	4.32e-12	63.2
MS.gene86594.t1	MTR_4g010640	53.571	56	26	0	54	109	7	62	5.42e-12	63.2
MS.gene86594.t1	MTR_3g106290	57.143	56	24	0	54	109	8	63	7.27e-12	62.4
MS.gene86594.t1	MTR_2g103700	50.000	60	30	0	54	113	7	66	7.67e-12	62.0
MS.gene86594.t1	MTR_4g008860	57.143	56	24	0	54	109	8	63	1.15e-11	61.6
MS.gene86594.t1	MTR_1g074310	50.000	62	30	1	54	114	21	82	1.25e-11	60.5
MS.gene86594.t1	MTR_3g090760	31.953	169	101	4	28	191	96	255	1.27e-11	63.2
MS.gene86594.t1	MTR_1g048610	54.386	57	25	1	54	109	89	145	1.95e-11	61.6
MS.gene86594.t1	MTR_6g041970	38.889	90	42	1	54	143	18	94	2.04e-11	58.9
MS.gene86594.t1	MTR_4g100450	35.000	120	68	2	4	113	95	214	2.61e-11	62.0
MS.gene86594.t1	MTR_2g438180	51.613	62	29	1	54	114	14	75	2.76e-11	59.3
MS.gene86594.t1	MTR_5g009620	48.000	75	29	2	41	109	97	167	2.96e-11	62.0
MS.gene86594.t1	MTR_2g043040	37.778	90	56	0	53	142	18	107	3.24e-11	61.2
MS.gene86594.t1	MTR_2g015050	52.632	57	26	1	54	109	134	190	3.84e-11	61.2
MS.gene86594.t1	MTR_4g078710	35.238	105	58	2	54	156	28	124	3.99e-11	60.8
MS.gene86594.t1	MTR_8g099215	43.750	80	39	1	36	109	83	162	4.31e-11	61.6
MS.gene86594.t1	MTR_2g014340	51.786	56	27	0	54	109	19	74	7.31e-11	59.7
MS.gene86594.t1	MTR_4g100420	50.746	67	30	2	48	113	153	217	7.54e-11	60.8

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene86594.t1	AT4G25470	52.489	221	84	6	7	215	5	216	1.30e-62	194
MS.gene86594.t1	AT4G25480	52.752	218	88	6	7	215	5	216	2.09e-58	183
MS.gene86594.t1	AT5G51990	49.296	213	82	6	19	215	20	222	3.63e-57	181
MS.gene86594.t1	AT1G63030	48.438	192	79	5	29	215	5	181	1.73e-53	170
MS.gene86594.t1	AT1G63030	48.438	192	79	5	29	215	5	181	1.73e-53	170
MS.gene86594.t1	AT1G12610	50.000	172	74	2	27	198	3	162	2.13e-53	171
MS.gene86594.t1	AT4G25490	51.208	207	85	5	19	215	13	213	3.87e-53	170
MS.gene86594.t1	AT5G25810	49.593	123	55	1	13	135	2	117	3.23e-31	114
MS.gene86594.t1	AT5G11590	52.632	114	50	1	26	135	19	132	1.42e-29	110
MS.gene86594.t1	AT2G44940	59.140	93	38	0	43	135	89	181	3.63e-29	110
MS.gene86594.t1	AT4G32800	56.122	98	37	1	50	141	15	112	4.71e-29	108
MS.gene86594.t1	AT3G16280	62.025	79	30	0	50	128	57	135	1.04e-26	102
MS.gene86594.t1	AT1G01250	58.750	80	33	0	49	128	40	119	1.27e-26	101
MS.gene86594.t1	AT3G16280	62.025	79	30	0	50	128	75	153	1.47e-26	102
MS.gene86594.t1	AT2G35700	58.750	80	33	0	49	128	40	119	3.36e-26	100
MS.gene86594.t1	AT4G16750	47.788	113	54	1	22	129	3	115	5.67e-26	99.4
MS.gene86594.t1	AT2G36450	36.517	178	96	5	50	215	11	183	1.65e-24	95.9
MS.gene86594.t1	AT3G60490	52.747	91	42	1	39	128	55	145	5.67e-24	96.3
MS.gene86594.t1	AT2G25820	59.211	76	31	0	53	128	25	100	5.20e-23	92.8
MS.gene86594.t1	AT1G71450	56.098	82	36	0	53	134	23	104	3.38e-21	87.0
MS.gene86594.t1	AT5G52020	38.286	175	95	5	50	215	61	231	2.38e-19	83.2
MS.gene86594.t1	AT2G47520	53.030	66	31	0	47	112	43	108	7.03e-18	78.2
MS.gene86594.t1	AT1G33760	54.023	87	40	0	54	140	20	106	1.65e-17	77.4
MS.gene86594.t1	AT5G21960	29.245	212	102	5	52	215	5	216	1.88e-17	77.8
MS.gene86594.t1	AT4G13620	50.000	78	38	1	35	111	212	289	3.13e-17	79.7
MS.gene86594.t1	AT1G19210	31.868	182	96	5	54	215	12	185	7.70e-17	75.5
MS.gene86594.t1	AT1G77200	57.143	77	33	0	52	128	41	117	1.25e-16	76.3
MS.gene86594.t1	AT1G22190	52.055	73	33	1	39	111	70	140	6.92e-16	74.3
MS.gene86594.t1	AT1G21910	45.652	92	43	1	54	138	50	141	8.07e-16	73.9
MS.gene86594.t1	AT2G22200	36.885	122	65	2	53	173	70	180	1.07e-15	73.9
MS.gene86594.t1	AT4G39780	55.738	61	27	0	49	109	88	148	1.42e-15	73.9
MS.gene86594.t1	AT1G46768	55.556	63	27	1	49	111	27	88	1.43e-15	71.6
MS.gene86594.t1	AT1G46768	55.556	63	27	1	49	111	27	88	1.43e-15	71.6
MS.gene86594.t1	AT1G46768	55.556	63	27	1	49	111	27	88	1.43e-15	71.2
MS.gene86594.t1	AT3G11020	57.143	63	27	0	51	113	75	137	4.53e-15	73.2
MS.gene86594.t1	AT4G06746	51.613	62	30	0	54	115	36	97	6.12e-15	69.7
MS.gene86594.t1	AT3G16770	42.157	102	55	2	14	111	35	136	7.26e-15	71.6
MS.gene86594.t1	AT1G74930	40.698	86	51	0	54	139	21	106	8.74e-15	70.5
MS.gene86594.t1	AT5G65130	39.167	120	59	3	7	113	52	170	8.86e-15	71.6
MS.gene86594.t1	AT2G20880	31.792	173	108	3	30	202	165	327	9.45e-15	72.0
MS.gene86594.t1	AT1G12630	38.636	176	87	5	50	205	15	189	9.97e-15	70.1
MS.gene86594.t1	AT5G65130	39.167	120	59	3	7	113	54	172	1.01e-14	71.6
MS.gene86594.t1	AT5G47230	33.136	169	101	5	30	193	133	294	2.31e-14	70.9
MS.gene86594.t1	AT4G28140	32.237	152	78	5	36	181	120	252	3.37e-14	70.1
MS.gene86594.t1	AT1G78080	55.932	59	26	0	53	111	151	209	3.67e-14	70.5
MS.gene86594.t1	AT1G22810	35.115	131	66	4	54	176	14	133	9.17e-14	66.2
MS.gene86594.t1	AT2G33710	46.835	79	37	1	49	122	65	143	9.51e-14	67.8
MS.gene86594.t1	AT3G50260	40.860	93	46	2	47	135	14	101	1.19e-13	66.2
MS.gene86594.t1	AT2G33710	46.835	79	37	1	49	122	65	143	1.43e-13	67.8
MS.gene86594.t1	AT5G05410	57.627	59	25	0	54	112	79	137	1.56e-13	68.6
MS.gene86594.t1	AT1G36060	57.895	57	24	0	53	109	142	198	1.94e-13	68.2
MS.gene86594.t1	AT5G05410	57.627	59	25	0	54	112	79	137	2.00e-13	68.6
MS.gene86594.t1	AT4G36900	51.667	60	29	0	50	109	26	85	2.75e-13	66.2
MS.gene86594.t1	AT1G71520	42.708	96	46	3	48	137	8	100	2.81e-13	65.1
MS.gene86594.t1	AT5G67190	50.000	58	29	0	54	111	21	78	4.58e-13	65.5
MS.gene86594.t1	AT2G23340	47.692	65	34	0	54	118	28	92	5.46e-13	65.1
MS.gene86594.t1	AT5G13330	50.000	64	30	1	50	113	37	98	1.20e-12	64.7
MS.gene86594.t1	AT5G61890	50.000	64	30	1	50	113	88	149	1.82e-12	64.7
MS.gene86594.t1	AT4G31060	42.529	87	47	2	54	137	27	113	2.12e-12	63.5
MS.gene86594.t1	AT1G15360	55.357	56	25	0	54	109	7	62	2.16e-12	63.9
MS.gene86594.t1	AT1G15360	55.357	56	25	0	54	109	7	62	2.16e-12	63.9
MS.gene86594.t1	AT1G75490	48.571	70	36	0	53	122	41	110	2.54e-12	63.9
MS.gene86594.t1	AT5G07580	48.101	79	38	2	48	125	106	182	3.03e-12	63.5
MS.gene86594.t1	AT3G57600	53.571	56	26	0	54	109	28	83	3.12e-12	64.7
MS.gene86594.t1	AT5G61600	57.377	61	23	2	50	109	86	144	5.05e-12	63.5
MS.gene86594.t1	AT4G17490	44.828	87	43	3	30	113	113	197	5.51e-12	63.9
MS.gene86594.t1	AT5G44210	47.143	70	30	1	54	123	33	95	5.60e-12	62.8
MS.gene86594.t1	AT3G15210	53.968	63	26	1	47	109	21	80	6.78e-12	62.8
MS.gene86594.t1	AT4G11140	43.836	73	35	1	54	126	87	153	7.15e-12	63.5
MS.gene86594.t1	AT1G72360	40.698	86	42	1	47	132	18	94	8.60e-12	62.4
MS.gene86594.t1	AT1G72360	38.053	113	51	2	20	132	50	143	1.02e-11	62.8
MS.gene86594.t1	AT5G25390	51.786	56	27	0	54	109	7	62	1.06e-11	62.0
MS.gene86594.t1	AT4G27950	52.632	57	27	0	54	110	118	174	1.21e-11	63.2
MS.gene86594.t1	AT3G61630	45.333	75	35	1	54	128	105	173	1.68e-11	62.8
MS.gene86594.t1	AT5G51190	53.968	63	26	2	48	109	68	128	2.03e-11	61.6
MS.gene86594.t1	AT1G72360	40.698	86	42	1	47	132	69	145	2.15e-11	62.0
MS.gene86594.t1	AT5G53290	42.045	88	49	1	23	110	96	181	2.16e-11	62.8
MS.gene86594.t1	AT5G43410	46.479	71	35	2	40	109	3	71	2.56e-11	59.7
MS.gene86594.t1	AT1G12890	44.872	78	40	1	32	109	2	76	4.06e-11	60.8
MS.gene86594.t1	AT5G25190	55.357	56	25	0	54	109	8	63	5.23e-11	59.7
MS.gene86594.t1	AT5G18450	54.386	57	26	0	53	109	33	89	5.64e-11	61.2
MS.gene86594.t1	AT3G23230	48.387	62	31	1	54	114	20	81	7.83e-11	58.5

Find 61 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTCCTCCCTGCTCGCTTCT+TGG	0.191170	6.1:-51108966	None:intergenic
TTCCTCCCTGCTCGCTTCTT+GGG	0.269830	6.1:-51108965	None:intergenic
AGCAGGGAGGAAGATATTTA+AGG	0.337814	6.1:+51108976	MS.gene86594:CDS
ATGGGCTCGGGCTGCCATAT+CGG	0.344047	6.1:-51109113	None:intergenic
AGCTATGCGTAGGGGACATT+AGG	0.349071	6.1:-51109405	None:intergenic
TTGCCGCAACATCATGGGCT+CGG	0.383157	6.1:-51109126	None:intergenic
GCCAACCGCACCTCAGAATC+TGG	0.388784	6.1:-51108932	None:intergenic
TGAGGAAATGGAGTGTGAAT+AGG	0.393355	6.1:-51108879	None:intergenic
GTCTGAGTTGTGGAGGAATA+TGG	0.404875	6.1:+51109381	MS.gene86594:CDS
ATCGAGGAAGTTGCTGGAAT+AGG	0.421748	6.1:-51109205	None:intergenic
TGTCCCCTACGCATAGCTTT+GGG	0.437452	6.1:+51109410	MS.gene86594:CDS
GCTATGCGTAGGGGACATTA+GGG	0.449422	6.1:-51109404	None:intergenic
AGCCCATGATGTTGCGGCAA+TGG	0.452206	6.1:+51109129	MS.gene86594:CDS
AGCAACCCCAAGAAGCGAGC+AGG	0.455361	6.1:+51108959	MS.gene86594:CDS
GGAAGAGGAACTTAGACAAA+TGG	0.456512	6.1:+51109029	MS.gene86594:CDS
ATGCCATTGCCGCAACATCA+TGG	0.461556	6.1:-51109132	None:intergenic
CGGGCTGCCATATCGGCTGT+TGG	0.466848	6.1:-51109106	None:intergenic
TGCCGCAACATCATGGGCTC+GGG	0.469002	6.1:-51109125	None:intergenic
GAAATCCTAGTCTTCGTGTT+GGG	0.474381	6.1:-51109070	None:intergenic
TCTATAGAGGTGTGAGGAAG+AGG	0.476465	6.1:+51109014	MS.gene86594:CDS
AGCTACAACAGTCTCAATAT+CGG	0.484335	6.1:-51109296	None:intergenic
ACTCGCCACCCGGTCTATAG+AGG	0.484514	6.1:+51109001	MS.gene86594:CDS
ATGTCCCCTACGCATAGCTT+TGG	0.484533	6.1:+51109409	MS.gene86594:CDS
TCCTCCCTGCTCGCTTCTTG+GGG	0.492302	6.1:-51108964	None:intergenic
GTAATCATTATAGTATTGTC+TGG	0.496774	6.1:-51109274	None:intergenic
TTCCTCACACCTCTATAGAC+CGG	0.497253	6.1:-51109010	None:intergenic
ATTGTCTGGTCTAAAAGCTT+CGG	0.508757	6.1:-51109260	None:intergenic
CTCGATAAAAGATATTCAAA+AGG	0.509288	6.1:+51109222	MS.gene86594:CDS
AAGATGATGAGGTATCACTA+TGG	0.509514	6.1:+51109473	MS.gene86594:CDS
ATCTGGTGATGATGCGTCGA+AGG	0.510409	6.1:-51108915	None:intergenic
CTGTCTCAATTTCGCAGACT+CGG	0.516981	6.1:+51109171	MS.gene86594:CDS
GCAACCCCAAGAAGCGAGCA+GGG	0.524041	6.1:+51108960	MS.gene86594:CDS
TGCCATTGCCGCAACATCAT+GGG	0.528895	6.1:-51109131	None:intergenic
GTCTGGTCTAAAAGCTTCGG+CGG	0.543707	6.1:-51109257	None:intergenic
TGTTGCGGCAATGGCATTGA+GGG	0.544171	6.1:+51109138	MS.gene86594:CDS
AGCCCGAGCCCATGATGTTG+CGG	0.551385	6.1:+51109123	MS.gene86594:CDS
GAAGAGGAACTTAGACAAAT+GGG	0.551458	6.1:+51109030	MS.gene86594:CDS
ACCAGATTCTGAGGTGCGGT+TGG	0.561969	6.1:+51108931	MS.gene86594:CDS
GGGAGCCCAACACGAAGACT+AGG	0.562532	6.1:+51109065	MS.gene86594:CDS
CGCATCATCACCAGATTCTG+AGG	0.563456	6.1:+51108922	MS.gene86594:CDS
ATGTTGCGGCAATGGCATTG+AGG	0.572065	6.1:+51109137	MS.gene86594:CDS
CAAATGGGTGTGTGAAATGA+GGG	0.573881	6.1:+51109045	MS.gene86594:CDS
CGAAATCCTAGTCTTCGTGT+TGG	0.574554	6.1:-51109071	None:intergenic
CGAGTCTGCGAAATTGAGAC+AGG	0.581266	6.1:-51109170	None:intergenic
TCATACCCAAAGCTATGCGT+AGG	0.583004	6.1:-51109415	None:intergenic
ACAAATGGGTGTGTGAAATG+AGG	0.584388	6.1:+51109044	MS.gene86594:CDS
CATACCCAAAGCTATGCGTA+GGG	0.586017	6.1:-51109414	None:intergenic
TCCTCACACCTCTATAGACC+GGG	0.594637	6.1:-51109009	None:intergenic
ATTTAAGGAAACTCGCCACC+CGG	0.602002	6.1:+51108991	MS.gene86594:CDS
TCTGGTGATGATGCGTCGAA+GGG	0.610909	6.1:-51108914	None:intergenic
TGTTAAATATGTCTGAGTTG+TGG	0.612225	6.1:+51109371	MS.gene86594:CDS
ACGAAGACTAGGATTTCGCT+AGG	0.623466	6.1:+51109076	MS.gene86594:CDS
TCAATTTCGCAGACTCGGTG+TGG	0.646164	6.1:+51109176	MS.gene86594:CDS
ATTTCGCAGACTCGGTGTGG+CGG	0.650223	6.1:+51109179	MS.gene86594:CDS
TAAATATGTCTGAGTTGTGG+AGG	0.678753	6.1:+51109374	MS.gene86594:CDS
CATCACCAGATTCTGAGGTG+CGG	0.681123	6.1:+51108927	MS.gene86594:CDS
ACCCGGTCTATAGAGGTGTG+AGG	0.690377	6.1:+51109008	MS.gene86594:CDS
ACCCCAAGAAGCGAGCAGGG+AGG	0.693278	6.1:+51108963	MS.gene86594:CDS
GTTGCGGCAATGGCATTGAG+GGG	0.718595	6.1:+51109139	MS.gene86594:CDS
ATACCCAAAGCTATGCGTAG+GGG	0.718683	6.1:-51109413	None:intergenic
TCACACCTCTATAGACCGGG+TGG	0.728637	6.1:-51109006	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	CTCGATAAAAGATATTCAAA+AGG	+	chr6.1:51109222-51109241	MS.gene86594:CDS	25.0%
!	GTAATCATTATAGTATTGTC+TGG	-	chr6.1:51109277-51109296	None:intergenic	25.0%
!!	CTTTTGAATATCTTTTATCG+AGG	-	chr6.1:51109224-51109243	None:intergenic	25.0%
!!!	AGAAAAATCTTTTGAGGAAA+TGG	-	chr6.1:51108894-51108913	None:intergenic	25.0%
	TGTTAAATATGTCTGAGTTG+TGG	+	chr6.1:51109371-51109390	MS.gene86594:CDS	30.0%
!	AAAGAGCTGAATATCTTTTG+TGG	+	chr6.1:51109331-51109350	MS.gene86594:CDS	30.0%
!	AAAGATATTCAGCTCTTTTG+TGG	-	chr6.1:51109329-51109348	None:intergenic	30.0%
!	AAGAGCTGAATATCTTTTGT+GGG	+	chr6.1:51109332-51109351	MS.gene86594:CDS	30.0%
!!	ACAAGATTTTCAAGATGATG+AGG	+	chr6.1:51109462-51109481	MS.gene86594:CDS	30.0%
	AGCTACAACAGTCTCAATAT+CGG	-	chr6.1:51109299-51109318	None:intergenic	35.0%
	ATTGTCTGGTCTAAAAGCTT+CGG	-	chr6.1:51109263-51109282	None:intergenic	35.0%
	GAAGAGGAACTTAGACAAAT+GGG	+	chr6.1:51109030-51109049	MS.gene86594:CDS	35.0%
	TAAATATGTCTGAGTTGTGG+AGG	+	chr6.1:51109374-51109393	MS.gene86594:CDS	35.0%
!	AAGATGATGAGGTATCACTA+TGG	+	chr6.1:51109473-51109492	MS.gene86594:CDS	35.0%
!	AGAGCTGAATATCTTTTGTG+GGG	+	chr6.1:51109333-51109352	MS.gene86594:CDS	35.0%
!	GAAGGGAGAAAAATCTTTTG+AGG	-	chr6.1:51108900-51108919	None:intergenic	35.0%
	ACAAATGGGTGTGTGAAATG+AGG	+	chr6.1:51109044-51109063	MS.gene86594:CDS	40.0%
	AGCAGGGAGGAAGATATTTA+AGG	+	chr6.1:51108976-51108995	MS.gene86594:CDS	40.0%
	CAAATGGGTGTGTGAAATGA+GGG	+	chr6.1:51109045-51109064	MS.gene86594:CDS	40.0%
	GGAAGAGGAACTTAGACAAA+TGG	+	chr6.1:51109029-51109048	MS.gene86594:CDS	40.0%
	TGAGGAAATGGAGTGTGAAT+AGG	-	chr6.1:51108882-51108901	None:intergenic	40.0%
!	AACTTTTCCAACAGCCGATA+TGG	+	chr6.1:51109099-51109118	MS.gene86594:CDS	40.0%
!	GAAATCCTAGTCTTCGTGTT+GGG	-	chr6.1:51109073-51109092	None:intergenic	40.0%
!	TCTTTTATCGAGGAAGTTGC+TGG	-	chr6.1:51109214-51109233	None:intergenic	40.0%
	ACGAAGACTAGGATTTCGCT+AGG	+	chr6.1:51109076-51109095	MS.gene86594:CDS	45.0%
	ATACCCAAAGCTATGCGTAG+GGG	-	chr6.1:51109416-51109435	None:intergenic	45.0%
	ATCGAGGAAGTTGCTGGAAT+AGG	-	chr6.1:51109208-51109227	None:intergenic	45.0%
	ATTTAAGGAAACTCGCCACC+CGG	+	chr6.1:51108991-51109010	MS.gene86594:CDS	45.0%
	CATACCCAAAGCTATGCGTA+GGG	-	chr6.1:51109417-51109436	None:intergenic	45.0%
	CTGTCTCAATTTCGCAGACT+CGG	+	chr6.1:51109171-51109190	MS.gene86594:CDS	45.0%
	GTCTGAGTTGTGGAGGAATA+TGG	+	chr6.1:51109381-51109400	MS.gene86594:CDS	45.0%
	TCATACCCAAAGCTATGCGT+AGG	-	chr6.1:51109418-51109437	None:intergenic	45.0%
	TTCCTCACACCTCTATAGAC+CGG	-	chr6.1:51109013-51109032	None:intergenic	45.0%
!	CGAAATCCTAGTCTTCGTGT+TGG	-	chr6.1:51109074-51109093	None:intergenic	45.0%
!	TCTATAGAGGTGTGAGGAAG+AGG	+	chr6.1:51109014-51109033	MS.gene86594:CDS	45.0%
	AGCTATGCGTAGGGGACATT+AGG	-	chr6.1:51109408-51109427	None:intergenic	50.0%
	ATGCCATTGCCGCAACATCA+TGG	-	chr6.1:51109135-51109154	None:intergenic	50.0%
	ATGTCCCCTACGCATAGCTT+TGG	+	chr6.1:51109409-51109428	MS.gene86594:CDS	50.0%
	ATGTTGCGGCAATGGCATTG+AGG	+	chr6.1:51109137-51109156	MS.gene86594:CDS	50.0%
	CGAGTCTGCGAAATTGAGAC+AGG	-	chr6.1:51109173-51109192	None:intergenic	50.0%
	CGCATCATCACCAGATTCTG+AGG	+	chr6.1:51108922-51108941	MS.gene86594:CDS	50.0%
	GCTATGCGTAGGGGACATTA+GGG	-	chr6.1:51109407-51109426	None:intergenic	50.0%
	GTCTGGTCTAAAAGCTTCGG+CGG	-	chr6.1:51109260-51109279	None:intergenic	50.0%
	TCCTCACACCTCTATAGACC+GGG	-	chr6.1:51109012-51109031	None:intergenic	50.0%
	TGCCATTGCCGCAACATCAT+GGG	-	chr6.1:51109134-51109153	None:intergenic	50.0%
	TGTCCCCTACGCATAGCTTT+GGG	+	chr6.1:51109410-51109429	MS.gene86594:CDS	50.0%
!	ATCTGGTGATGATGCGTCGA+AGG	-	chr6.1:51108918-51108937	None:intergenic	50.0%
!	TCTGGTGATGATGCGTCGAA+GGG	-	chr6.1:51108917-51108936	None:intergenic	50.0%
!	TGTTGCGGCAATGGCATTGA+GGG	+	chr6.1:51109138-51109157	MS.gene86594:CDS	50.0%
!!	CATCACCAGATTCTGAGGTG+CGG	+	chr6.1:51108927-51108946	MS.gene86594:CDS	50.0%
!!	TCAATTTCGCAGACTCGGTG+TGG	+	chr6.1:51109176-51109195	MS.gene86594:CDS	50.0%
	AGCCCATGATGTTGCGGCAA+TGG	+	chr6.1:51109129-51109148	MS.gene86594:CDS	55.0%
	TCACACCTCTATAGACCGGG+TGG	-	chr6.1:51109009-51109028	None:intergenic	55.0%
	TTCCTCCCTGCTCGCTTCTT+GGG	-	chr6.1:51108968-51108987	None:intergenic	55.0%
	TTGCCGCAACATCATGGGCT+CGG	-	chr6.1:51109129-51109148	None:intergenic	55.0%
!	ACCCGGTCTATAGAGGTGTG+AGG	+	chr6.1:51109008-51109027	MS.gene86594:CDS	55.0%
!	GTTGCGGCAATGGCATTGAG+GGG	+	chr6.1:51109139-51109158	MS.gene86594:CDS	55.0%
!!	ACCAGATTCTGAGGTGCGGT+TGG	+	chr6.1:51108931-51108950	MS.gene86594:CDS	55.0%
!!	ATTTCGCAGACTCGGTGTGG+CGG	+	chr6.1:51109179-51109198	MS.gene86594:CDS	55.0%
	ACTCGCCACCCGGTCTATAG+AGG	+	chr6.1:51109001-51109020	MS.gene86594:CDS	60.0%
	AGCAACCCCAAGAAGCGAGC+AGG	+	chr6.1:51108959-51108978	MS.gene86594:CDS	60.0%
	AGCCCGAGCCCATGATGTTG+CGG	+	chr6.1:51109123-51109142	MS.gene86594:CDS	60.0%
	ATGGGCTCGGGCTGCCATAT+CGG	-	chr6.1:51109116-51109135	None:intergenic	60.0%
	CTTCCTCCCTGCTCGCTTCT+TGG	-	chr6.1:51108969-51108988	None:intergenic	60.0%
	GCAACCCCAAGAAGCGAGCA+GGG	+	chr6.1:51108960-51108979	MS.gene86594:CDS	60.0%
	GCCAACCGCACCTCAGAATC+TGG	-	chr6.1:51108935-51108954	None:intergenic	60.0%
	GGGAGCCCAACACGAAGACT+AGG	+	chr6.1:51109065-51109084	MS.gene86594:CDS	60.0%
	TCCTCCCTGCTCGCTTCTTG+GGG	-	chr6.1:51108967-51108986	None:intergenic	60.0%
	TGCCGCAACATCATGGGCTC+GGG	-	chr6.1:51109128-51109147	None:intergenic	60.0%
	ACCCCAAGAAGCGAGCAGGG+AGG	+	chr6.1:51108963-51108982	MS.gene86594:CDS	65.0%
!	CGGGCTGCCATATCGGCTGT+TGG	-	chr6.1:51109109-51109128	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr6.1	gene	51108857	51109504	51108857	ID=MS.gene86594
chr6.1	mRNA	51108857	51109504	51108857	ID=MS.gene86594.t1;Parent=MS.gene86594
chr6.1	exon	51108857	51109504	51108857	ID=MS.gene86594.t1.exon1;Parent=MS.gene86594.t1
chr6.1	CDS	51108857	51109504	51108857	ID=cds.MS.gene86594.t1;Parent=MS.gene86594.t1

Gene Sequence

>MS.gene86594

ATGATTACTACTAACAACTCTTCCTATTCACACTCCATTTCCTCAAAAGATTTTTCTCCCTTCGACGCATCATCACCAGATTCTGAGGTGCGGTTGGCATCAAGCAACCCCAAGAAGCGAGCAGGGAGGAAGATATTTAAGGAAACTCGCCACCCGGTCTATAGAGGTGTGAGGAAGAGGAACTTAGACAAATGGGTGTGTGAAATGAGGGAGCCCAACACGAAGACTAGGATTTCGCTAGGAACTTTTCCAACAGCCGATATGGCAGCCCGAGCCCATGATGTTGCGGCAATGGCATTGAGGGGACGCTACGCCTGTCTCAATTTCGCAGACTCGGTGTGGCGGCTTCCTATTCCAGCAACTTCCTCGATAAAAGATATTCAAAAGGCAGCTACAAAAGCCGCCGAAGCTTTTAGACCAGACAATACTATAATGATTACCGATATTGAGACTGTTGTAGCTGTCGTCGCCACAAAAGAGCTGAATATCTTTTGTGGGGAAGATGAGCATGAAATGTTAAATATGTCTGAGTTGTGGAGGAATATGGCCCTAATGTCCCCTACGCATAGCTTTGGGTATGATGATCATTATGAAGATATTCATGCACAAGATTTTCAAGATGATGAGGTATCACTATGGAACTTCTAA

Protein sequence

>MS.gene86594.t1

MITTNNSSYSHSISSKDFSPFDASSPDSEVRLASSNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNTKTRISLGTFPTADMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSSIKDIQKAATKAAEAFRPDNTIMITDIETVVAVVATKELNIFCGEDEHEMLNMSELWRNMALMSPTHSFGYDDHYEDIHAQDFQDDEVSLWNF