AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79326


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79326.t1 MTR_6g465690 88.596 228 20 3 1 223 1 227 3.55e-141 395
MS.gene79326.t1 MTR_6g466000 76.526 213 34 3 26 226 19 227 2.52e-113 323
MS.gene79326.t1 MTR_6g465450 72.273 220 49 5 3 218 1 212 1.76e-105 304
MS.gene79326.t1 MTR_6g465420 74.863 183 43 2 39 218 29 211 5.11e-100 291
MS.gene79326.t1 MTR_6g465460 75.410 183 41 3 39 218 29 210 2.61e-99 290
MS.gene79326.t1 MTR_6g465430 75.135 185 43 2 37 218 27 211 4.75e-98 286
MS.gene79326.t1 MTR_6g466130 73.558 208 47 4 23 226 25 228 3.20e-97 283
MS.gene79326.t1 MTR_6g465530 70.854 199 45 4 36 226 5 198 2.34e-92 269
MS.gene79326.t1 MTR_6g465510 70.673 208 40 4 36 226 5 208 2.76e-90 265
MS.gene79326.t1 MTR_6g465990 65.278 216 39 4 23 226 2 193 1.77e-84 249
MS.gene79326.t1 MTR_6g465850 54.365 252 53 4 33 226 32 279 1.96e-77 234
MS.gene79326.t1 MTR_1g101600 64.706 187 59 3 42 226 19 200 4.24e-76 228
MS.gene79326.t1 MTR_6g466020 56.436 202 64 4 23 223 2 180 4.01e-69 210
MS.gene79326.t1 MTR_5g010940 40.329 243 112 5 1 226 1 227 3.39e-53 171
MS.gene79326.t1 MTR_5g010930 45.894 207 87 6 39 226 24 224 4.99e-53 170
MS.gene79326.t1 MTR_4g102660 51.456 206 82 7 36 226 16 218 7.45e-51 165
MS.gene79326.t1 MTR_5g010910 41.704 223 106 5 22 226 6 222 2.20e-50 164
MS.gene79326.t1 MTR_3g110205 57.292 96 41 0 59 154 38 133 7.60e-33 117
MS.gene79326.t1 MTR_8g006410 65.385 78 27 0 61 138 49 126 1.25e-31 115
MS.gene79326.t1 MTR_7g046260 64.198 81 29 0 58 138 55 135 3.94e-31 114
MS.gene79326.t1 MTR_7g117690 63.750 80 29 0 59 138 23 102 1.11e-30 111
MS.gene79326.t1 MTR_5g012910 62.025 79 30 0 60 138 24 102 8.15e-30 109
MS.gene79326.t1 MTR_2g085015 57.778 90 36 2 58 145 41 130 1.62e-29 110
MS.gene79326.t1 MTR_8g013860 53.608 97 44 1 43 138 25 121 1.59e-28 107
MS.gene79326.t1 MTR_8g102800 53.465 101 47 0 54 154 27 127 2.73e-28 107
MS.gene79326.t1 MTR_2g101340 52.475 101 42 2 44 138 15 115 3.67e-28 106
MS.gene79326.t1 MTR_8g027465 50.000 106 50 1 36 138 11 116 1.22e-27 103
MS.gene79326.t1 MTR_6g088405 58.974 78 32 0 61 138 41 118 3.49e-27 103
MS.gene79326.t1 MTR_4g102670 40.462 173 81 6 60 226 11 167 5.72e-27 102
MS.gene79326.t1 MTR_4g100650 58.974 78 32 0 61 138 71 148 4.42e-25 99.4
MS.gene79326.t1 MTR_6g088425 48.246 114 49 1 42 145 17 130 9.52e-24 95.5
MS.gene79326.t1 MTR_4g035430 47.423 97 46 1 49 145 22 113 2.71e-22 91.3
MS.gene79326.t1 MTR_1g006660 54.255 94 39 1 49 138 28 121 4.36e-22 91.3
MS.gene79326.t1 MTR_5g008590 49.541 109 54 1 64 172 11 118 2.73e-19 82.4
MS.gene79326.t1 MTR_5g008550 46.000 100 52 1 64 161 21 120 4.61e-19 82.0
MS.gene79326.t1 MTR_1g101550 34.857 175 101 2 64 226 57 230 9.52e-18 79.3
MS.gene79326.t1 MTR_1g014780 35.115 131 72 2 33 150 1 131 1.92e-17 78.6
MS.gene79326.t1 MTR_2g435590 37.692 130 75 2 5 134 43 166 2.62e-17 78.6
MS.gene79326.t1 MTR_5g008470 44.048 84 47 0 66 149 77 160 1.01e-16 75.5
MS.gene79326.t1 MTR_1g014820 36.000 125 64 2 63 183 26 138 1.14e-16 77.0
MS.gene79326.t1 MTR_3g102100 40.541 111 59 3 64 172 45 150 1.61e-16 74.7
MS.gene79326.t1 MTR_3g105510 44.186 86 44 1 64 145 37 122 2.12e-16 75.9
MS.gene79326.t1 MTR_5g083340 58.621 58 24 0 64 121 85 142 4.84e-16 76.6
MS.gene79326.t1 MTR_2g105380 43.333 90 46 1 52 136 105 194 5.94e-16 75.9
MS.gene79326.t1 MTR_1g060910 32.558 172 69 6 48 196 3 150 6.03e-16 73.2
MS.gene79326.t1 MTR_2g043050 44.706 85 47 0 63 147 18 102 8.63e-16 73.6
MS.gene79326.t1 MTR_1g090170 42.697 89 45 1 59 147 147 229 8.96e-16 75.1
MS.gene79326.t1 MTR_1g090170 42.697 89 45 1 59 147 234 316 1.50e-15 75.1
MS.gene79326.t1 MTR_1g014860 33.858 127 72 2 39 158 2 123 1.52e-15 73.2
MS.gene79326.t1 MTR_3g074130 57.895 57 24 0 63 119 149 205 2.30e-15 74.3
MS.gene79326.t1 MTR_1g087920 44.872 78 43 0 54 131 67 144 2.32e-15 73.9
MS.gene79326.t1 MTR_5g062700 55.932 59 26 0 63 121 172 230 2.34e-15 74.3
MS.gene79326.t1 MTR_1g019110 43.333 90 43 1 64 145 44 133 2.72e-15 71.6
MS.gene79326.t1 MTR_8g090350 46.053 76 38 1 63 135 112 187 2.72e-15 73.6
MS.gene79326.t1 MTR_8g092460 55.000 60 27 0 64 123 145 204 3.96e-15 73.2
MS.gene79326.t1 MTR_2g090235 55.932 59 26 0 63 121 217 275 4.42e-15 73.9
MS.gene79326.t1 MTR_7g020980 51.667 60 29 0 60 119 47 106 5.38e-15 70.9
MS.gene79326.t1 MTR_7g021010 53.125 64 29 1 57 119 4 67 7.22e-15 69.3
MS.gene79326.t1 MTR_3g105480 44.048 84 43 1 66 145 33 116 8.35e-15 71.2
MS.gene79326.t1 MTR_2g043030 40.659 91 54 0 63 153 18 108 1.04e-14 70.5
MS.gene79326.t1 MTR_7g021010 51.667 60 29 0 60 119 47 106 1.25e-14 69.7
MS.gene79326.t1 MTR_5g083330 49.315 73 37 0 49 121 20 92 1.39e-14 71.6
MS.gene79326.t1 MTR_1g014800 51.667 60 29 0 63 122 30 89 1.41e-14 70.5
MS.gene79326.t1 MTR_4g086220 57.143 56 24 0 64 119 96 151 1.44e-14 70.9
MS.gene79326.t1 MTR_3g053690 56.250 64 25 1 56 119 22 82 1.45e-14 70.5
MS.gene79326.t1 MTR_1g028560 41.463 82 43 1 64 145 115 191 1.95e-14 71.6
MS.gene79326.t1 MTR_5g016750 55.357 56 25 0 64 119 25 80 1.95e-14 69.3
MS.gene79326.t1 MTR_5g082950 58.929 56 23 0 64 119 66 121 2.12e-14 71.2
MS.gene79326.t1 MTR_2g089170 57.143 56 24 0 64 119 65 120 2.54e-14 68.9
MS.gene79326.t1 MTR_8g022820 42.683 82 44 1 54 135 114 192 2.57e-14 71.2
MS.gene79326.t1 MTR_8g022820 42.683 82 44 1 54 135 114 192 2.57e-14 71.2
MS.gene79326.t1 MTR_8g022820 42.683 82 44 1 54 135 113 191 2.71e-14 71.2
MS.gene79326.t1 MTR_2g078680 46.067 89 41 2 35 119 1 86 2.75e-14 69.3
MS.gene79326.t1 MTR_4g086160 55.357 56 25 0 64 119 96 151 4.27e-14 69.3
MS.gene79326.t1 MTR_7g028925 53.333 60 25 1 63 122 28 84 4.85e-14 65.9
MS.gene79326.t1 MTR_4g086190 55.357 56 25 0 64 119 96 151 5.77e-14 68.9
MS.gene79326.t1 MTR_4g086165 55.357 56 25 0 64 119 82 137 6.87e-14 68.2
MS.gene79326.t1 MTR_0939s0010 55.357 56 25 0 64 119 65 120 9.07e-14 67.8
MS.gene79326.t1 MTR_7g092190 57.143 56 24 0 64 119 30 85 9.51e-14 69.3
MS.gene79326.t1 MTR_1g074310 56.140 57 24 1 64 119 21 77 1.33e-13 66.2
MS.gene79326.t1 MTR_2g015050 49.275 69 34 1 52 119 122 190 1.42e-13 68.6
MS.gene79326.t1 MTR_5g009620 40.217 92 49 1 34 119 76 167 2.12e-13 68.2
MS.gene79326.t1 MTR_4g114570 46.479 71 31 1 64 134 7 70 3.84e-13 66.2
MS.gene79326.t1 MTR_2g438180 55.932 59 25 1 64 121 14 72 3.91e-13 64.7
MS.gene79326.t1 MTR_4g010640 53.571 56 26 0 64 119 7 62 5.90e-13 65.9
MS.gene79326.t1 MTR_4g078710 53.571 56 26 0 64 119 28 83 6.21e-13 65.9
MS.gene79326.t1 MTR_2g014340 47.887 71 34 1 49 119 7 74 6.55e-13 65.5
MS.gene79326.t1 MTR_2g043020 38.710 93 57 0 63 155 18 110 6.93e-13 65.5
MS.gene79326.t1 MTR_3g106290 57.143 56 24 0 64 119 8 63 7.34e-13 65.1
MS.gene79326.t1 MTR_3g090760 39.560 91 46 1 40 130 98 179 7.79e-13 67.0
MS.gene79326.t1 MTR_1g048610 37.500 104 62 2 17 119 44 145 8.09e-13 65.9
MS.gene79326.t1 MTR_1g070070 52.632 57 26 1 64 119 21 77 9.62e-13 63.9
MS.gene79326.t1 MTR_4g008860 57.143 56 24 0 64 119 8 63 9.93e-13 65.1
MS.gene79326.t1 MTR_2g043040 40.000 85 51 0 63 147 18 102 1.40e-12 65.1
MS.gene79326.t1 MTR_5g085100 40.566 106 47 3 24 129 15 104 1.49e-12 65.9
MS.gene79326.t1 MTR_2g103700 51.786 56 27 0 64 119 7 62 1.74e-12 63.9
MS.gene79326.t1 MTR_4g100450 41.667 84 48 1 37 119 127 210 1.79e-12 65.9
MS.gene79326.t1 MTR_1g074230 54.386 57 25 1 64 119 19 75 2.01e-12 62.8
MS.gene79326.t1 MTR_2g014300 55.357 56 25 0 64 119 15 70 2.36e-12 63.5
MS.gene79326.t1 MTR_1g074250 50.820 61 28 1 61 119 16 76 3.40e-12 62.0
MS.gene79326.t1 MTR_3g072610 47.191 89 43 2 64 148 25 113 3.44e-12 63.9
MS.gene79326.t1 MTR_2g016730 39.560 91 49 2 53 142 11 96 3.66e-12 65.1
MS.gene79326.t1 MTR_4g100420 45.946 74 37 2 47 119 142 213 5.10e-12 64.3
MS.gene79326.t1 MTR_4g054360 47.692 65 33 1 56 119 116 180 1.54e-11 62.8
MS.gene79326.t1 MTR_4g088005 44.928 69 37 1 52 119 45 113 2.43e-11 59.7
MS.gene79326.t1 MTR_5g085070 47.297 74 29 2 56 129 46 109 2.77e-11 62.0
MS.gene79326.t1 MTR_1g090290 48.387 62 29 2 59 119 110 169 2.90e-11 60.8
MS.gene79326.t1 MTR_8g099215 38.710 93 51 1 33 119 70 162 3.06e-11 62.0
MS.gene79326.t1 MTR_4g111915 44.068 59 33 0 64 122 53 111 4.11e-11 59.3
MS.gene79326.t1 MTR_6g041970 39.560 91 42 1 64 154 18 95 4.81e-11 58.2
MS.gene79326.t1 MTR_4g054740 46.154 65 34 1 56 119 89 153 4.87e-11 60.8
MS.gene79326.t1 MTR_5g075570 45.000 60 33 0 60 119 120 179 5.41e-11 61.2
MS.gene79326.t1 MTR_8g069360 50.000 56 28 0 64 119 44 99 6.09e-11 61.6
MS.gene79326.t1 MTR_6g012970 38.202 89 47 1 31 119 13 93 8.48e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79326.t1 AT4G25470 55.612 196 70 4 41 226 28 216 1.64e-66 204
MS.gene79326.t1 AT4G25480 56.923 195 67 4 42 226 29 216 1.89e-63 197
MS.gene79326.t1 AT5G51990 51.500 200 75 4 41 226 31 222 4.72e-63 196
MS.gene79326.t1 AT1G63030 50.515 194 81 4 35 226 1 181 4.78e-60 187
MS.gene79326.t1 AT1G63030 50.515 194 81 4 35 226 1 181 4.78e-60 187
MS.gene79326.t1 AT4G25490 56.633 196 66 4 42 226 26 213 7.84e-60 187
MS.gene79326.t1 AT1G12610 68.103 116 37 0 35 150 1 116 2.26e-56 178
MS.gene79326.t1 AT5G25810 58.511 94 38 1 53 145 24 117 9.23e-33 118
MS.gene79326.t1 AT2G35700 48.120 133 69 0 59 191 40 172 1.51e-31 114
MS.gene79326.t1 AT5G11590 57.143 98 39 1 48 145 38 132 3.07e-31 115
MS.gene79326.t1 AT2G44940 54.286 105 48 0 53 157 89 193 7.13e-31 115
MS.gene79326.t1 AT4G32800 50.467 107 47 1 51 151 6 112 1.23e-30 113
MS.gene79326.t1 AT1G01250 60.000 80 32 0 59 138 40 119 1.34e-27 104
MS.gene79326.t1 AT3G16280 59.494 79 32 0 60 138 57 135 1.39e-27 105
MS.gene79326.t1 AT4G16750 50.000 112 50 2 34 139 4 115 1.95e-27 103
MS.gene79326.t1 AT3G16280 59.494 79 32 0 60 138 75 153 2.28e-27 105
MS.gene79326.t1 AT2G36450 40.000 190 90 6 52 226 3 183 1.45e-25 99.0
MS.gene79326.t1 AT2G25820 60.526 76 30 0 63 138 25 100 1.75e-25 99.8
MS.gene79326.t1 AT5G52020 40.678 177 89 6 60 226 61 231 2.47e-25 99.4
MS.gene79326.t1 AT3G60490 60.000 75 30 0 64 138 71 145 3.21e-25 99.8
MS.gene79326.t1 AT1G71450 38.519 135 83 0 64 198 24 158 2.01e-22 90.5
MS.gene79326.t1 AT2G47520 44.330 97 50 1 23 119 13 105 1.44e-20 85.5
MS.gene79326.t1 AT1G33760 36.095 169 94 3 64 225 20 181 2.33e-20 85.1
MS.gene79326.t1 AT1G21910 47.826 92 41 1 64 148 50 141 4.23e-19 82.8
MS.gene79326.t1 AT1G77200 57.143 77 33 0 62 138 41 117 7.06e-19 82.8
MS.gene79326.t1 AT1G12630 39.037 187 85 6 60 226 15 192 1.08e-18 80.9
MS.gene79326.t1 AT1G22190 41.964 112 50 2 10 121 44 140 5.95e-18 80.5
MS.gene79326.t1 AT4G13620 51.282 78 37 1 45 121 212 289 7.46e-18 81.6
MS.gene79326.t1 AT1G46768 57.143 63 26 1 59 121 27 88 1.20e-17 77.0
MS.gene79326.t1 AT1G46768 57.143 63 26 1 59 121 27 88 1.45e-17 77.0
MS.gene79326.t1 AT1G46768 57.143 63 26 1 59 121 27 88 1.45e-17 77.0
MS.gene79326.t1 AT3G16770 52.564 78 30 1 44 121 66 136 1.65e-17 79.0
MS.gene79326.t1 AT4G39780 55.738 61 27 0 59 119 88 148 6.27e-17 77.8
MS.gene79326.t1 AT5G21960 46.429 84 45 0 62 145 5 88 8.57e-17 76.3
MS.gene79326.t1 AT1G74930 43.023 86 49 0 64 149 21 106 9.74e-17 75.9
MS.gene79326.t1 AT1G19210 33.333 156 88 2 64 219 12 151 2.05e-16 74.7
MS.gene79326.t1 AT5G65130 37.692 130 67 4 4 121 41 168 2.31e-16 76.3
MS.gene79326.t1 AT5G65130 37.692 130 67 4 4 121 43 170 2.34e-16 76.3
MS.gene79326.t1 AT4G06746 51.613 62 30 0 64 125 36 97 6.72e-16 72.4
MS.gene79326.t1 AT2G22200 57.895 57 24 0 63 119 70 126 9.01e-16 74.3
MS.gene79326.t1 AT3G50260 34.074 135 75 4 56 188 13 135 1.25e-15 72.0
MS.gene79326.t1 AT4G36900 55.000 60 27 0 60 119 26 85 1.57e-15 72.8
MS.gene79326.t1 AT1G78080 55.932 59 26 0 63 121 151 209 1.65e-15 74.7
MS.gene79326.t1 AT1G71520 32.867 143 76 4 58 190 8 140 1.69e-15 71.2
MS.gene79326.t1 AT2G23340 57.143 56 24 0 64 119 28 83 2.60e-15 71.6
MS.gene79326.t1 AT5G67190 55.357 56 25 0 64 119 21 76 2.69e-15 71.6
MS.gene79326.t1 AT3G11020 53.030 66 31 0 58 123 72 137 3.34e-15 73.6
MS.gene79326.t1 AT2G20880 46.250 80 41 1 40 119 165 242 3.41e-15 73.6
MS.gene79326.t1 AT1G36060 57.895 57 24 0 63 119 142 198 4.89e-15 73.2
MS.gene79326.t1 AT2G33710 54.098 61 28 0 59 119 65 125 6.82e-15 71.6
MS.gene79326.t1 AT2G33710 46.250 80 38 1 59 133 65 144 7.82e-15 71.2
MS.gene79326.t1 AT5G05410 57.143 56 24 0 64 119 79 134 9.01e-15 72.4
MS.gene79326.t1 AT5G05410 57.143 56 24 0 64 119 79 134 1.14e-14 72.4
MS.gene79326.t1 AT3G61630 33.571 140 83 2 64 193 105 244 1.17e-14 72.0
MS.gene79326.t1 AT4G28140 52.542 59 28 0 63 121 142 200 1.20e-14 71.6
MS.gene79326.t1 AT5G07580 39.370 127 69 4 15 135 58 182 2.67e-14 69.3
MS.gene79326.t1 AT5G13330 49.315 73 32 2 60 132 37 104 2.81e-14 69.7
MS.gene79326.t1 AT3G15210 55.556 63 25 1 57 119 21 80 4.13e-14 69.3
MS.gene79326.t1 AT3G57600 55.357 56 25 0 64 119 28 83 5.71e-14 69.7
MS.gene79326.t1 AT1G22810 39.785 93 41 2 64 148 14 99 6.83e-14 67.0
MS.gene79326.t1 AT5G61890 53.333 60 26 1 60 119 88 145 7.47e-14 68.9
MS.gene79326.t1 AT1G72360 42.105 76 44 0 44 119 54 129 1.09e-13 68.6
MS.gene79326.t1 AT5G61600 57.377 61 23 2 60 119 86 144 1.24e-13 68.2
MS.gene79326.t1 AT5G44210 55.357 56 25 0 64 119 33 88 1.30e-13 67.4
MS.gene79326.t1 AT1G03800 40.426 94 50 2 29 119 18 108 1.57e-13 68.2
MS.gene79326.t1 AT1G15360 55.357 56 25 0 64 119 7 62 1.84e-13 67.0
MS.gene79326.t1 AT1G15360 55.357 56 25 0 64 119 7 62 1.84e-13 67.0
MS.gene79326.t1 AT5G47230 32.680 153 91 6 57 204 151 296 2.06e-13 68.6
MS.gene79326.t1 AT1G72360 46.032 63 34 0 57 119 18 80 2.35e-13 67.0
MS.gene79326.t1 AT5G64750 47.143 70 36 1 74 143 195 263 2.59e-13 68.6
MS.gene79326.t1 AT4G31060 30.061 163 102 4 54 213 22 175 2.92e-13 66.2
MS.gene79326.t1 AT5G51190 53.968 63 26 2 58 119 68 128 3.03e-13 67.0
MS.gene79326.t1 AT4G11140 38.710 93 44 2 64 149 87 173 4.27e-13 67.4
MS.gene79326.t1 AT4G27950 52.632 57 27 0 64 120 118 174 4.41e-13 67.8
MS.gene79326.t1 AT1G72360 46.032 63 34 0 57 119 69 131 5.73e-13 66.6
MS.gene79326.t1 AT5G43410 51.667 60 28 1 61 119 12 71 5.98e-13 64.3
MS.gene79326.t1 AT1G75490 45.833 72 39 0 63 134 41 112 6.74e-13 65.5
MS.gene79326.t1 AT5G19790 46.154 78 38 2 45 121 5 79 7.75e-13 66.2
MS.gene79326.t1 AT5G25390 51.786 56 27 0 64 119 7 62 1.44e-12 64.3
MS.gene79326.t1 AT3G23230 52.632 57 26 1 64 119 20 76 1.69e-12 63.2
MS.gene79326.t1 AT5G25190 55.357 56 25 0 64 119 8 63 3.88e-12 63.2
MS.gene79326.t1 AT5G53290 50.877 57 28 0 64 120 125 181 3.97e-12 65.1
MS.gene79326.t1 AT3G20310 50.000 62 31 0 58 119 21 82 4.02e-12 63.9
MS.gene79326.t1 AT5G18450 51.724 58 28 0 63 120 33 90 4.11e-12 64.7
MS.gene79326.t1 AT1G28360 55.357 56 25 0 64 119 12 67 5.21e-12 62.8
MS.gene79326.t1 AT1G77640 48.889 90 40 2 64 147 43 132 7.49e-12 63.2
MS.gene79326.t1 AT1G28370 51.786 56 27 0 64 119 20 75 1.02e-11 61.6
MS.gene79326.t1 AT4G17490 51.562 64 28 2 57 119 132 193 1.22e-11 63.2
MS.gene79326.t1 AT2G40350 45.833 72 32 1 64 135 74 138 1.33e-11 61.2
MS.gene79326.t1 AT4G23750 49.123 57 29 0 64 120 122 178 1.40e-11 63.5
MS.gene79326.t1 AT4G23750 49.123 57 29 0 64 120 122 178 1.40e-11 63.5
MS.gene79326.t1 AT2G40340 50.000 56 28 0 64 119 14 69 1.58e-11 62.8
MS.gene79326.t1 AT2G40340 50.000 56 28 0 64 119 14 69 1.58e-11 62.8
MS.gene79326.t1 AT2G40340 50.000 56 28 0 64 119 14 69 1.58e-11 62.8
MS.gene79326.t1 AT2G40350 45.833 72 32 1 64 135 67 131 1.67e-11 60.8
MS.gene79326.t1 AT5G61590 47.253 91 45 2 46 135 91 179 1.71e-11 61.6
MS.gene79326.t1 AT1G28370 51.786 56 27 0 64 119 58 113 1.72e-11 61.6
MS.gene79326.t1 AT1G50640 52.381 63 27 1 57 119 24 83 2.06e-11 62.0
MS.gene79326.t1 AT2G40340 50.000 56 28 0 64 119 72 127 2.26e-11 62.4
MS.gene79326.t1 AT5G47220 52.632 57 26 1 64 119 117 173 2.47e-11 62.0
MS.gene79326.t1 AT2G40340 50.000 56 28 0 64 119 72 127 2.92e-11 62.4
MS.gene79326.t1 AT2G40340 50.000 56 28 0 64 119 79 134 3.35e-11 62.4
MS.gene79326.t1 AT1G12890 41.026 78 43 1 42 119 2 76 5.44e-11 60.5
MS.gene79326.t1 AT2G46310 48.214 56 29 0 64 119 99 154 6.94e-11 61.2
MS.gene79326.t1 AT5G07310 51.562 64 29 1 60 123 90 151 8.52e-11 60.5

Find 74 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAGGCCGCAGAGGCTTTC+AGG 0.128293 6.3:+55927835 MS.gene79326:CDS
ATGTTGCTTCAATGGCATTA+AGG 0.227810 6.3:+55927721 MS.gene79326:CDS
TTTCTACCTGCACGCTTCTT+TGG 0.248008 6.3:-55927549 None:intergenic
AATGAACTCTCGGAGGAATT+TGG 0.252896 6.3:-55927459 None:intergenic
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6.3:-55927654 None:intergenic
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6.3:+55927962 MS.gene79326:CDS
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6.3:-55928050 None:intergenic
GCCTGAGTGGTGGCAGGTAT+AGG 0.319307 6.3:-55927789 None:intergenic
CTCGGAGGAATTTGGAGAAA+TGG 0.345355 6.3:-55927451 None:intergenic
CCTGAGTGGTGGCAGGTATA+GGG 0.356312 6.3:-55927788 None:intergenic
TCGGAGGAATTTGGAGAAAT+GGG 0.374883 6.3:-55927450 None:intergenic
AGACTCGCCACCCGGTATAC+AGG 0.404494 6.3:+55927583 MS.gene79326:CDS
TGTTGCTTCAATGGCATTAA+GGG 0.407611 6.3:+55927722 MS.gene79326:CDS
AACAGCAGAGATGGCAGCCC+GGG 0.422465 6.3:+55927692 MS.gene79326:CDS
CAAACAAGAAGACTAAGATT+TGG 0.423028 6.3:+55927655 MS.gene79326:CDS
CGGGCTGCCATCTCTGCTGT+TGG 0.428361 6.3:-55927690 None:intergenic
TTCCTCACACCCCTGTATAC+CGG 0.428874 6.3:-55927594 None:intergenic
ATGTCTCCTACACATAGCTT+TGG 0.439535 6.3:+55927990 MS.gene79326:CDS
GGCACATGATGTTGCTTCAA+TGG 0.452514 6.3:+55927713 MS.gene79326:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6.3:+55927991 MS.gene79326:CDS
GGAAGAGGAACATAGACAAA+TGG 0.472354 6.3:+55927613 MS.gene79326:CDS
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6.3:+55927911 MS.gene79326:CDS
TTAGTCATTGAAGTCTTGTC+CGG 0.492787 6.3:-55927858 None:intergenic
TGTGGATAGGAAGAGTTGTT+AGG 0.493490 6.3:-55927426 None:intergenic
TTGAAGCAACATCATGTGCC+CGG 0.494126 6.3:-55927710 None:intergenic
TCCTCACACCCCTGTATACC+GGG 0.496269 6.3:-55927593 None:intergenic
AGCGGCTGCACAGGCCGCAG+AGG 0.499896 6.3:+55927827 MS.gene79326:CDS
GGCCGCAGAGGCTTTCAGGC+CGG 0.500487 6.3:+55927839 MS.gene79326:CDS
TATACAGGGGTGTGAGGAAG+AGG 0.502437 6.3:+55927598 MS.gene79326:CDS
CAACAGCAGAGATGGCAGCC+CGG 0.504594 6.3:+55927691 MS.gene79326:CDS
TGGAGAAATGGGGTGTGGAT+AGG 0.507088 6.3:-55927439 None:intergenic
AAGATGAAGAGGTATCACTA+TGG 0.512792 6.3:+55928060 MS.gene79326:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6.3:+55927917 MS.gene79326:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6.3:-55927963 None:intergenic
GAAGAGGAACATAGACAAAT+GGG 0.527875 6.3:+55927614 MS.gene79326:CDS
GACTCGCCACCCGGTATACA+GGG 0.529452 6.3:+55927584 MS.gene79326:CDS
GCGAATTCAGAGGGTTCTCA+AGG 0.530969 6.3:+55927483 MS.gene79326:CDS
TGAATTCGCAAATGAACTCT+CGG 0.538349 6.3:-55927469 None:intergenic
GGAGTCTGCAAAGTTGAGAC+AGG 0.548191 6.3:-55927754 None:intergenic
TTGTATGGAAGAGGAAGAAG+AGG 0.552825 6.3:+55927926 MS.gene79326:CDS
AGTTCATTTGCGAATTCAGA+GGG 0.558084 6.3:+55927474 MS.gene79326:CDS
GTTCAAGGAGACTCGCCACC+CGG 0.558195 6.3:+55927575 MS.gene79326:CDS
CCCTATACCTGCCACCACTC+AGG 0.559517 6.3:+55927788 MS.gene79326:CDS
CCACTACGGAGGAGCAGAGT+AGG 0.568284 6.3:+55927901 MS.gene79326:CDS
GAATTTGGAGAAATGGGGTG+TGG 0.572692 6.3:-55927444 None:intergenic
TGCAGGTAGAAAGAAGTTCA+AGG 0.572936 6.3:+55927560 MS.gene79326:CDS
CAAATGGGTGTGTGAAATGA+GGG 0.573881 6.3:+55927629 MS.gene79326:CDS
TGAAGCAACATCATGTGCCC+GGG 0.576327 6.3:-55927709 None:intergenic
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6.3:+55927660 MS.gene79326:CDS
ACGACTCCAAAGAAGCGTGC+AGG 0.582103 6.3:+55927543 MS.gene79326:CDS
ACAAATGGGTGTGTGAAATG+AGG 0.584388 6.3:+55927628 MS.gene79326:CDS
AGCTAACCTCACATCCTCGT+TGG 0.585044 6.3:-55927517 None:intergenic
CGAATTCAGAGGGTTCTCAA+GGG 0.590953 6.3:+55927484 MS.gene79326:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6.3:+55927473 MS.gene79326:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.595940 6.3:+55927955 MS.gene79326:CDS
TGATACCCAAAGCTATGTGT+AGG 0.600852 6.3:-55927996 None:intergenic
TGACACGGCTATTGCCACTA+CGG 0.604979 6.3:+55927887 MS.gene79326:CDS
GTTGCTTCAATGGCATTAAG+GGG 0.609844 6.3:+55927723 MS.gene79326:CDS
CAATTTCCAACGAGGATGTG+AGG 0.611045 6.3:+55927511 MS.gene79326:CDS
ACCCGGTATACAGGGGTGTG+AGG 0.624934 6.3:+55927592 MS.gene79326:CDS
CCTACTCTGCTCCTCCGTAG+TGG 0.628033 6.3:-55927901 None:intergenic
CGGAGGAATTTGGAGAAATG+GGG 0.628091 6.3:-55927449 None:intergenic
TGTATGGAAGAGGAAGAAGA+GGG 0.637572 6.3:+55927927 MS.gene79326:CDS
TATGGAAGAGGAAGAAGAGG+GGG 0.662829 6.3:+55927929 MS.gene79326:CDS
TCAACTTTGCAGACTCCGCG+TGG 0.671197 6.3:+55927760 MS.gene79326:CDS
GTCCGGCCTGAAAGCCTCTG+CGG 0.672100 6.3:-55927841 None:intergenic
CACGGCTATTGCCACTACGG+AGG 0.684552 6.3:+55927890 MS.gene79326:CDS
ACTCGCCACCCGGTATACAG+GGG 0.698870 6.3:+55927585 MS.gene79326:CDS
AATGACTAATGATATTGACA+CGG 0.707724 6.3:+55927872 MS.gene79326:CDS
ATTCGCAAATGAACTCTCGG+AGG 0.727426 6.3:-55927466 None:intergenic
TCACACCCCTGTATACCGGG+TGG 0.728872 6.3:-55927590 None:intergenic
GTATGGAAGAGGAAGAAGAG+GGG 0.730904 6.3:+55927928 MS.gene79326:CDS
AGGTATAGGGAGTCGCCACG+CGG 0.731956 6.3:-55927775 None:intergenic
AGGGATGTCAATTTCCAACG+AGG 0.794906 6.3:+55927503 MS.gene79326:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATGACTAATGATATTGACA+CGG + chr6.3:55927872-55927891 MS.gene79326:CDS 25.0%
CAAACAAGAAGACTAAGATT+TGG + chr6.3:55927655-55927674 MS.gene79326:CDS 30.0%
GGCAAAAGATATACAAAAAG+CGG + chr6.3:55927809-55927828 MS.gene79326:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG - chr6.3:55927657-55927676 None:intergenic 30.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6.3:55927660-55927679 MS.gene79326:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG - chr6.3:55928053-55928072 None:intergenic 35.0%
AGTTCATTTGCGAATTCAGA+GGG + chr6.3:55927474-55927493 MS.gene79326:CDS 35.0%
GAAGAGGAACATAGACAAAT+GGG + chr6.3:55927614-55927633 MS.gene79326:CDS 35.0%
TGAATTCGCAAATGAACTCT+CGG - chr6.3:55927472-55927491 None:intergenic 35.0%
! ATGTTGCTTCAATGGCATTA+AGG + chr6.3:55927721-55927740 MS.gene79326:CDS 35.0%
! TGTTGCTTCAATGGCATTAA+GGG + chr6.3:55927722-55927741 MS.gene79326:CDS 35.0%
! TTAGTCATTGAAGTCTTGTC+CGG - chr6.3:55927861-55927880 None:intergenic 35.0%
! TTGTATATCTTTTGCCTGAG+TGG - chr6.3:55927805-55927824 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6.3:55928060-55928079 MS.gene79326:CDS 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG + chr6.3:55928049-55928068 MS.gene79326:CDS 35.0%
AATGAACTCTCGGAGGAATT+TGG - chr6.3:55927462-55927481 None:intergenic 40.0%
ACAAATGGGTGTGTGAAATG+AGG + chr6.3:55927628-55927647 MS.gene79326:CDS 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6.3:55927990-55928009 MS.gene79326:CDS 40.0%
CAAATGGGTGTGTGAAATGA+GGG + chr6.3:55927629-55927648 MS.gene79326:CDS 40.0%
GAGTTCATTTGCGAATTCAG+AGG + chr6.3:55927473-55927492 MS.gene79326:CDS 40.0%
GGAAGAGGAACATAGACAAA+TGG + chr6.3:55927613-55927632 MS.gene79326:CDS 40.0%
GTTGCTTCAATGGCATTAAG+GGG + chr6.3:55927723-55927742 MS.gene79326:CDS 40.0%
TCGGAGGAATTTGGAGAAAT+GGG - chr6.3:55927453-55927472 None:intergenic 40.0%
TGATACCCAAAGCTATGTGT+AGG - chr6.3:55927999-55928018 None:intergenic 40.0%
TGCAGGTAGAAAGAAGTTCA+AGG + chr6.3:55927560-55927579 MS.gene79326:CDS 40.0%
TGTATGGAAGAGGAAGAAGA+GGG + chr6.3:55927927-55927946 MS.gene79326:CDS 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6.3:55927991-55928010 MS.gene79326:CDS 40.0%
TGTGGATAGGAAGAGTTGTT+AGG - chr6.3:55927429-55927448 None:intergenic 40.0%
TTGTATGGAAGAGGAAGAAG+AGG + chr6.3:55927926-55927945 MS.gene79326:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG - chr6.3:55927802-55927821 None:intergenic 40.0%
AGGGATGTCAATTTCCAACG+AGG + chr6.3:55927503-55927522 MS.gene79326:CDS 45.0%
ATTCGCAAATGAACTCTCGG+AGG - chr6.3:55927469-55927488 None:intergenic 45.0%
CAATTTCCAACGAGGATGTG+AGG + chr6.3:55927511-55927530 MS.gene79326:CDS 45.0%
CGAATTCAGAGGGTTCTCAA+GGG + chr6.3:55927484-55927503 MS.gene79326:CDS 45.0%
CGGAGGAATTTGGAGAAATG+GGG - chr6.3:55927452-55927471 None:intergenic 45.0%
CTCGGAGGAATTTGGAGAAA+TGG - chr6.3:55927454-55927473 None:intergenic 45.0%
GAATTTGGAGAAATGGGGTG+TGG - chr6.3:55927447-55927466 None:intergenic 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6.3:55927917-55927936 MS.gene79326:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG + chr6.3:55927962-55927981 MS.gene79326:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG - chr6.3:55927966-55927985 None:intergenic 45.0%
GTATGGAAGAGGAAGAAGAG+GGG + chr6.3:55927928-55927947 MS.gene79326:CDS 45.0%
TATACAAAAAGCGGCTGCAC+AGG + chr6.3:55927818-55927837 MS.gene79326:CDS 45.0%
TATGGAAGAGGAAGAAGAGG+GGG + chr6.3:55927929-55927948 MS.gene79326:CDS 45.0%
TGAACATGCCAGAGTTGTTG+AGG + chr6.3:55927955-55927974 MS.gene79326:CDS 45.0%
TTGAAGCAACATCATGTGCC+CGG - chr6.3:55927713-55927732 None:intergenic 45.0%
TTTCTACCTGCACGCTTCTT+TGG - chr6.3:55927552-55927571 None:intergenic 45.0%
! CACTTTTCCAACAGCAGAGA+TGG + chr6.3:55927683-55927702 MS.gene79326:CDS 45.0%
! GGCACATGATGTTGCTTCAA+TGG + chr6.3:55927713-55927732 MS.gene79326:CDS 45.0%
AGCTAACCTCACATCCTCGT+TGG - chr6.3:55927520-55927539 None:intergenic 50.0%
GCGAATTCAGAGGGTTCTCA+AGG + chr6.3:55927483-55927502 MS.gene79326:CDS 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6.3:55927911-55927930 MS.gene79326:CDS 50.0%
GGAGTCTGCAAAGTTGAGAC+AGG - chr6.3:55927757-55927776 None:intergenic 50.0%
TGAAGCAACATCATGTGCCC+GGG - chr6.3:55927712-55927731 None:intergenic 50.0%
TGACACGGCTATTGCCACTA+CGG + chr6.3:55927887-55927906 MS.gene79326:CDS 50.0%
TGGAGAAATGGGGTGTGGAT+AGG - chr6.3:55927442-55927461 None:intergenic 50.0%
TTCCTCACACCCCTGTATAC+CGG - chr6.3:55927597-55927616 None:intergenic 50.0%
! TATACAGGGGTGTGAGGAAG+AGG + chr6.3:55927598-55927617 MS.gene79326:CDS 50.0%
CCTGAGTGGTGGCAGGTATA+GGG - chr6.3:55927791-55927810 None:intergenic 55.0%
TCAACTTTGCAGACTCCGCG+TGG + chr6.3:55927760-55927779 MS.gene79326:CDS 55.0%
TCCTCACACCCCTGTATACC+GGG - chr6.3:55927596-55927615 None:intergenic 55.0%
! ACGACTCCAAAGAAGCGTGC+AGG + chr6.3:55927543-55927562 MS.gene79326:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6.3:55927798-55927817 None:intergenic 55.0%
AACAGCAGAGATGGCAGCCC+GGG + chr6.3:55927692-55927711 MS.gene79326:CDS 60.0%
ACTCGCCACCCGGTATACAG+GGG + chr6.3:55927585-55927604 MS.gene79326:CDS 60.0%
AGACTCGCCACCCGGTATAC+AGG + chr6.3:55927583-55927602 MS.gene79326:CDS 60.0%
AGGTATAGGGAGTCGCCACG+CGG - chr6.3:55927778-55927797 None:intergenic 60.0%
CAACAGCAGAGATGGCAGCC+CGG + chr6.3:55927691-55927710 MS.gene79326:CDS 60.0%
CACGGCTATTGCCACTACGG+AGG + chr6.3:55927890-55927909 MS.gene79326:CDS 60.0%
CCACTACGGAGGAGCAGAGT+AGG + chr6.3:55927901-55927920 MS.gene79326:CDS 60.0%
CCCTATACCTGCCACCACTC+AGG + chr6.3:55927788-55927807 MS.gene79326:CDS 60.0%
CCTACTCTGCTCCTCCGTAG+TGG - chr6.3:55927904-55927923 None:intergenic 60.0%
GACTCGCCACCCGGTATACA+GGG + chr6.3:55927584-55927603 MS.gene79326:CDS 60.0%
GCCTGAGTGGTGGCAGGTAT+AGG - chr6.3:55927792-55927811 None:intergenic 60.0%
GTTCAAGGAGACTCGCCACC+CGG + chr6.3:55927575-55927594 MS.gene79326:CDS 60.0%
TCACACCCCTGTATACCGGG+TGG - chr6.3:55927593-55927612 None:intergenic 60.0%
! ACCCGGTATACAGGGGTGTG+AGG + chr6.3:55927592-55927611 MS.gene79326:CDS 60.0%
CACAGGCCGCAGAGGCTTTC+AGG + chr6.3:55927835-55927854 MS.gene79326:CDS 65.0%
CGGGCTGCCATCTCTGCTGT+TGG - chr6.3:55927693-55927712 None:intergenic 65.0%
GTCCGGCCTGAAAGCCTCTG+CGG - chr6.3:55927844-55927863 None:intergenic 65.0%
GGCCGCAGAGGCTTTCAGGC+CGG + chr6.3:55927839-55927858 MS.gene79326:CDS 70.0%
AGCGGCTGCACAGGCCGCAG+AGG + chr6.3:55927827-55927846 MS.gene79326:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 55927411 55928091 55927411 ID=MS.gene79326
chr6.3 mRNA 55927411 55928091 55927411 ID=MS.gene79326.t1;Parent=MS.gene79326
chr6.3 exon 55927411 55928091 55927411 ID=MS.gene79326.t1.exon1;Parent=MS.gene79326.t1
chr6.3 CDS 55927411 55928091 55927411 ID=cds.MS.gene79326.t1;Parent=MS.gene79326.t1
Gene Sequence

>MS.gene79326

ATGGATATGTTTACACCTAACAACTCTTCCTATCCACACCCCATTTCTCCAAATTCCTCCGAGAGTTCATTTGCGAATTCAGAGGGTTCTCAAGGGATGTCAATTTCCAACGAGGATGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCAGGTAGAAAGAAGTTCAAGGAGACTCGCCACCCGGTATACAGGGGTGTGAGGAAGAGGAACATAGACAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACAGCAGAGATGGCAGCCCGGGCACATGATGTTGCTTCAATGGCATTAAGGGGACGCTACGCCTGTCTCAACTTTGCAGACTCCGCGTGGCGACTCCCTATACCTGCCACCACTCAGGCAAAAGATATACAAAAAGCGGCTGCACAGGCCGCAGAGGCTTTCAGGCCGGACAAGACTTCAATGACTAATGATATTGACACGGCTATTGCCACTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAAGAGGGGGCGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATCATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA

Protein sequence

>MS.gene79326.t1

MDMFTPNNSSYPHPISPNSSESSFANSEGSQGMSISNEDVRLAATTPKKRAGRKKFKETRHPVYRGVRKRNIDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLPIPATTQAKDIQKAAAQAAEAFRPDKTSMTNDIDTAIATTEEQSRTCMEEEEEGAMNMPELLRNMALMSPTHSFGYHEYEDIHVQDFPDFQDEEVSLWNY