AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene30853


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30853.t1 MTR_6g465690 87.826 230 22 3 2 228 1 227 1.45e-140 394
MS.gene30853.t1 MTR_6g466000 76.279 215 35 3 27 231 19 227 2.09e-113 324
MS.gene30853.t1 MTR_6g465450 73.756 221 48 4 4 223 1 212 5.13e-110 316
MS.gene30853.t1 MTR_6g465420 75.132 189 46 1 35 223 24 211 1.42e-104 303
MS.gene30853.t1 MTR_6g465460 74.603 189 44 2 36 223 25 210 3.33e-103 300
MS.gene30853.t1 MTR_6g465430 75.263 190 44 2 35 223 24 211 2.19e-101 294
MS.gene30853.t1 MTR_6g466130 75.481 208 47 2 24 231 25 228 9.09e-101 292
MS.gene30853.t1 MTR_6g465530 72.222 198 46 3 38 231 6 198 2.09e-93 272
MS.gene30853.t1 MTR_6g465510 71.981 207 41 3 38 231 6 208 1.10e-92 271
MS.gene30853.t1 MTR_6g465990 65.138 218 40 4 24 231 2 193 1.51e-84 249
MS.gene30853.t1 MTR_6g465850 58.730 252 46 5 34 231 32 279 4.21e-78 236
MS.gene30853.t1 MTR_1g101600 65.079 189 59 3 43 231 19 200 1.32e-76 230
MS.gene30853.t1 MTR_6g466020 54.369 206 66 4 24 228 2 180 5.41e-67 204
MS.gene30853.t1 MTR_5g010930 43.981 216 82 7 40 231 24 224 6.22e-52 168
MS.gene30853.t1 MTR_5g010940 41.850 227 109 6 20 231 9 227 2.42e-50 164
MS.gene30853.t1 MTR_4g102660 49.327 223 89 9 22 231 7 218 3.93e-50 163
MS.gene30853.t1 MTR_5g010910 41.778 225 107 7 23 231 6 222 4.64e-48 158
MS.gene30853.t1 MTR_3g110205 57.292 96 41 0 60 155 38 133 4.33e-33 118
MS.gene30853.t1 MTR_8g006410 65.385 78 27 0 62 139 49 126 7.66e-32 115
MS.gene30853.t1 MTR_7g046260 64.198 81 29 0 59 139 55 135 2.33e-31 115
MS.gene30853.t1 MTR_7g117690 63.750 80 29 0 60 139 23 102 5.73e-31 112
MS.gene30853.t1 MTR_2g085015 40.964 166 73 6 59 201 41 204 7.99e-31 114
MS.gene30853.t1 MTR_5g012910 62.025 79 30 0 61 139 24 102 5.10e-30 110
MS.gene30853.t1 MTR_8g013860 53.608 97 44 1 44 139 25 121 7.53e-29 108
MS.gene30853.t1 MTR_8g102800 53.465 101 47 0 55 155 27 127 2.65e-28 107
MS.gene30853.t1 MTR_2g101340 51.485 101 43 2 45 139 15 115 6.10e-28 105
MS.gene30853.t1 MTR_6g088405 58.974 78 32 0 62 139 41 118 2.51e-27 104
MS.gene30853.t1 MTR_8g027465 52.000 100 42 2 43 139 20 116 3.23e-27 103
MS.gene30853.t1 MTR_4g102670 40.000 175 83 6 61 231 11 167 6.06e-27 102
MS.gene30853.t1 MTR_4g100650 58.974 78 32 0 62 139 71 148 2.35e-25 100
MS.gene30853.t1 MTR_6g088425 48.246 114 49 1 43 146 17 130 1.00e-23 95.5
MS.gene30853.t1 MTR_4g035430 47.423 97 46 1 50 146 22 113 1.62e-22 92.0
MS.gene30853.t1 MTR_1g006660 59.494 79 32 0 61 139 43 121 5.88e-22 91.3
MS.gene30853.t1 MTR_5g008590 36.667 180 96 4 65 230 11 186 1.28e-19 83.6
MS.gene30853.t1 MTR_5g008550 46.000 100 52 1 65 162 21 120 2.75e-19 82.8
MS.gene30853.t1 MTR_1g014780 36.975 119 67 2 64 175 37 154 5.93e-18 80.1
MS.gene30853.t1 MTR_1g101550 37.143 175 101 3 65 231 57 230 1.33e-17 79.0
MS.gene30853.t1 MTR_2g435590 37.008 127 78 1 9 135 42 166 3.04e-17 78.6
MS.gene30853.t1 MTR_5g008470 44.048 84 47 0 67 150 77 160 6.14e-17 76.3
MS.gene30853.t1 MTR_3g105510 44.186 86 44 1 65 146 37 122 1.58e-16 76.3
MS.gene30853.t1 MTR_3g102100 58.929 56 23 0 65 120 45 100 1.61e-16 74.7
MS.gene30853.t1 MTR_1g014820 42.529 87 46 1 64 146 26 112 2.76e-16 75.9
MS.gene30853.t1 MTR_5g083340 58.621 58 24 0 65 122 85 142 3.46e-16 77.0
MS.gene30853.t1 MTR_1g060910 35.503 169 72 6 49 201 3 150 3.92e-16 73.9
MS.gene30853.t1 MTR_2g043050 44.706 85 47 0 64 148 18 102 5.60e-16 74.3
MS.gene30853.t1 MTR_1g090170 42.697 89 45 1 60 148 147 229 7.17e-16 75.5
MS.gene30853.t1 MTR_1g014860 34.454 119 69 2 60 171 17 133 1.17e-15 73.6
MS.gene30853.t1 MTR_1g019110 43.333 90 43 1 65 146 44 133 1.44e-15 72.4
MS.gene30853.t1 MTR_1g090170 42.697 89 45 1 60 148 234 316 1.50e-15 75.1
MS.gene30853.t1 MTR_2g105380 42.222 90 47 1 53 137 105 194 1.57e-15 75.1
MS.gene30853.t1 MTR_7g020980 53.125 64 29 1 58 120 43 106 1.79e-15 72.0
MS.gene30853.t1 MTR_5g062700 55.932 59 26 0 64 122 172 230 2.22e-15 74.7
MS.gene30853.t1 MTR_3g074130 57.895 57 24 0 64 120 149 205 2.27e-15 74.3
MS.gene30853.t1 MTR_1g087920 35.772 123 74 2 12 132 25 144 2.50e-15 73.9
MS.gene30853.t1 MTR_8g090350 46.053 76 38 1 64 136 112 187 2.61e-15 73.6
MS.gene30853.t1 MTR_8g092460 55.000 60 27 0 65 124 145 204 2.87e-15 73.9
MS.gene30853.t1 MTR_2g090235 55.932 59 26 0 64 122 217 275 3.62e-15 74.3
MS.gene30853.t1 MTR_7g021010 53.125 64 29 1 58 120 43 106 3.84e-15 71.2
MS.gene30853.t1 MTR_3g105480 44.048 84 43 1 67 146 33 116 6.19e-15 71.6
MS.gene30853.t1 MTR_2g043030 40.659 91 54 0 64 154 18 108 7.89e-15 70.9
MS.gene30853.t1 MTR_7g021010 51.667 60 29 0 61 120 8 67 8.60e-15 69.3
MS.gene30853.t1 MTR_1g014800 51.667 60 29 0 64 123 30 89 9.33e-15 70.9
MS.gene30853.t1 MTR_5g016750 55.357 56 25 0 65 120 25 80 1.00e-14 70.1
MS.gene30853.t1 MTR_1g028560 41.463 82 43 1 65 146 115 191 1.01e-14 72.4
MS.gene30853.t1 MTR_4g086220 57.143 56 24 0 65 120 96 151 1.01e-14 71.2
MS.gene30853.t1 MTR_5g082950 58.929 56 23 0 65 120 66 121 1.67e-14 71.6
MS.gene30853.t1 MTR_3g053690 55.000 60 27 0 61 120 23 82 1.94e-14 70.1
MS.gene30853.t1 MTR_2g089170 57.143 56 24 0 65 120 65 120 2.05e-14 69.3
MS.gene30853.t1 MTR_2g078680 57.143 56 24 0 65 120 31 86 2.39e-14 69.7
MS.gene30853.t1 MTR_4g086160 55.357 56 25 0 65 120 96 151 2.69e-14 70.1
MS.gene30853.t1 MTR_4g086165 42.105 95 47 1 26 120 51 137 3.08e-14 69.3
MS.gene30853.t1 MTR_5g083330 47.945 73 38 0 50 122 20 92 3.43e-14 70.5
MS.gene30853.t1 MTR_4g086190 55.357 56 25 0 65 120 96 151 3.79e-14 69.7
MS.gene30853.t1 MTR_1g048610 37.500 104 62 2 18 120 44 145 4.50e-14 69.3
MS.gene30853.t1 MTR_7g028925 53.333 60 25 1 64 123 28 84 4.86e-14 66.2
MS.gene30853.t1 MTR_8g022820 41.463 82 45 1 55 136 113 191 5.86e-14 70.5
MS.gene30853.t1 MTR_8g022820 41.463 82 45 1 55 136 114 192 6.05e-14 70.5
MS.gene30853.t1 MTR_8g022820 41.463 82 45 1 55 136 114 192 6.05e-14 70.5
MS.gene30853.t1 MTR_0939s0010 55.357 56 25 0 65 120 65 120 6.54e-14 68.2
MS.gene30853.t1 MTR_7g092190 57.143 56 24 0 65 120 30 85 8.17e-14 69.3
MS.gene30853.t1 MTR_1g074310 56.140 57 24 1 65 120 21 77 9.99e-14 66.6
MS.gene30853.t1 MTR_2g438180 55.932 59 25 1 65 122 14 72 2.15e-13 65.5
MS.gene30853.t1 MTR_2g015050 47.826 69 35 1 53 120 122 190 2.69e-13 67.8
MS.gene30853.t1 MTR_5g009620 48.000 75 29 2 52 120 97 167 3.30e-13 67.8
MS.gene30853.t1 MTR_4g114570 46.479 71 31 1 65 135 7 70 3.57e-13 66.6
MS.gene30853.t1 MTR_4g078710 53.571 56 26 0 65 120 28 83 3.94e-13 66.6
MS.gene30853.t1 MTR_3g090760 39.560 91 46 1 41 131 98 179 4.55e-13 67.8
MS.gene30853.t1 MTR_3g106290 57.143 56 24 0 65 120 8 63 5.61e-13 65.5
MS.gene30853.t1 MTR_4g010640 53.571 56 26 0 65 120 7 62 5.70e-13 65.9
MS.gene30853.t1 MTR_4g100450 42.169 83 47 1 39 120 128 210 5.78e-13 67.4
MS.gene30853.t1 MTR_1g070070 52.632 57 26 1 65 120 21 77 6.00e-13 64.7
MS.gene30853.t1 MTR_2g043020 38.710 93 57 0 64 156 18 110 6.18e-13 65.9
MS.gene30853.t1 MTR_2g014340 53.571 56 26 0 65 120 19 74 6.45e-13 65.5
MS.gene30853.t1 MTR_4g008860 57.143 56 24 0 65 120 8 63 8.56e-13 65.1
MS.gene30853.t1 MTR_2g043040 40.000 85 51 0 64 148 18 102 8.89e-13 65.9
MS.gene30853.t1 MTR_1g074230 54.386 57 25 1 65 120 19 75 1.33e-12 63.5
MS.gene30853.t1 MTR_2g103700 51.786 56 27 0 65 120 7 62 1.62e-12 63.9
MS.gene30853.t1 MTR_2g014300 55.357 56 25 0 65 120 15 70 1.77e-12 63.9
MS.gene30853.t1 MTR_3g072610 40.741 108 60 2 46 149 6 113 2.18e-12 64.7
MS.gene30853.t1 MTR_1g074250 50.820 61 28 1 62 120 16 76 2.34e-12 62.4
MS.gene30853.t1 MTR_4g100420 42.169 83 47 1 39 120 131 213 3.24e-12 65.1
MS.gene30853.t1 MTR_2g016730 43.590 78 43 1 43 120 2 78 9.74e-12 63.9
MS.gene30853.t1 MTR_5g085100 38.679 106 49 3 25 130 15 104 1.44e-11 63.2
MS.gene30853.t1 MTR_1g090290 48.387 62 29 2 60 120 110 169 1.74e-11 61.6
MS.gene30853.t1 MTR_5g085070 48.485 66 27 1 65 130 51 109 2.32e-11 62.4
MS.gene30853.t1 MTR_6g041970 39.560 91 42 1 65 155 18 95 2.73e-11 58.9
MS.gene30853.t1 MTR_8g099215 38.710 93 51 1 34 120 70 162 2.88e-11 62.4
MS.gene30853.t1 MTR_4g054360 46.154 65 34 1 57 120 116 180 3.71e-11 61.6
MS.gene30853.t1 MTR_4g111915 44.068 59 33 0 65 123 53 111 4.38e-11 59.3
MS.gene30853.t1 MTR_8g069360 50.000 56 28 0 65 120 44 99 4.53e-11 62.0
MS.gene30853.t1 MTR_5g075570 45.000 60 33 0 61 120 120 179 4.57e-11 61.6
MS.gene30853.t1 MTR_4g088005 39.000 100 55 3 27 120 14 113 5.13e-11 58.5
MS.gene30853.t1 MTR_6g012970 38.202 89 47 1 32 120 13 93 6.42e-11 61.6
MS.gene30853.t1 MTR_5g032820 50.877 57 28 0 65 121 46 102 9.15e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene30853.t1 AT4G25470 55.051 198 72 4 42 231 28 216 1.32e-65 202
MS.gene30853.t1 AT4G25480 53.704 216 81 5 23 231 13 216 1.34e-63 197
MS.gene30853.t1 AT5G51990 53.000 200 76 5 42 231 31 222 1.09e-62 195
MS.gene30853.t1 AT4G25490 56.566 198 67 5 43 231 26 213 3.09e-59 186
MS.gene30853.t1 AT1G63030 48.980 196 81 4 38 231 3 181 1.31e-58 183
MS.gene30853.t1 AT1G63030 48.980 196 81 4 38 231 3 181 1.31e-58 183
MS.gene30853.t1 AT1G12610 47.343 207 94 5 38 231 3 207 3.93e-56 178
MS.gene30853.t1 AT5G25810 61.628 86 33 0 61 146 32 117 4.89e-33 119
MS.gene30853.t1 AT5G11590 49.593 123 58 1 28 146 10 132 1.96e-32 118
MS.gene30853.t1 AT2G44940 54.286 105 48 0 54 158 89 193 3.55e-31 116
MS.gene30853.t1 AT4G32800 50.467 107 47 1 52 152 6 112 3.69e-31 114
MS.gene30853.t1 AT2G35700 45.255 137 71 1 60 196 40 172 3.10e-29 108
MS.gene30853.t1 AT1G01250 60.000 80 32 0 60 139 40 119 8.19e-28 105
MS.gene30853.t1 AT3G16280 59.494 79 32 0 61 139 57 135 8.71e-28 106
MS.gene30853.t1 AT3G16280 47.015 134 66 2 61 192 75 205 1.07e-27 106
MS.gene30853.t1 AT4G16750 58.750 80 33 0 60 139 35 114 1.50e-27 103
MS.gene30853.t1 AT2G36450 41.398 186 97 5 53 231 3 183 4.00e-27 103
MS.gene30853.t1 AT5G52020 40.113 177 94 5 61 231 61 231 7.00e-26 101
MS.gene30853.t1 AT2G25820 60.526 76 30 0 64 139 25 100 1.28e-25 100
MS.gene30853.t1 AT3G60490 60.000 75 30 0 65 139 71 145 1.64e-25 100
MS.gene30853.t1 AT1G71450 44.068 118 57 1 65 173 24 141 2.47e-22 90.5
MS.gene30853.t1 AT1G77200 46.218 119 61 2 21 139 2 117 1.43e-20 87.4
MS.gene30853.t1 AT2G47520 43.299 97 51 1 24 120 13 105 2.18e-20 85.1
MS.gene30853.t1 AT1G21910 47.826 92 41 1 65 149 50 141 3.44e-19 83.2
MS.gene30853.t1 AT1G33760 50.549 91 45 0 65 155 20 110 6.35e-19 81.6
MS.gene30853.t1 AT1G12630 38.743 191 84 6 61 231 15 192 9.17e-19 81.3
MS.gene30853.t1 AT4G13620 41.085 129 60 4 7 122 164 289 2.08e-18 83.2
MS.gene30853.t1 AT1G46768 57.143 63 26 1 60 122 27 88 6.38e-18 77.8
MS.gene30853.t1 AT1G46768 57.143 63 26 1 60 122 27 88 7.57e-18 77.8
MS.gene30853.t1 AT1G46768 57.143 63 26 1 60 122 27 88 7.57e-18 77.8
MS.gene30853.t1 AT3G16770 52.564 78 30 1 45 122 66 136 8.37e-18 80.1
MS.gene30853.t1 AT5G21960 46.429 84 45 0 63 146 5 88 4.40e-17 77.4
MS.gene30853.t1 AT4G39780 55.738 61 27 0 60 120 88 148 6.11e-17 77.8
MS.gene30853.t1 AT1G74930 43.023 86 49 0 65 150 21 106 6.12e-17 76.6
MS.gene30853.t1 AT3G50260 34.959 123 68 3 65 187 21 131 9.58e-17 75.1
MS.gene30853.t1 AT1G22190 50.685 73 34 1 50 122 70 140 1.23e-16 77.0
MS.gene30853.t1 AT1G19210 32.500 160 88 3 65 224 12 151 1.31e-16 75.5
MS.gene30853.t1 AT4G06746 51.613 62 30 0 65 126 36 97 4.05e-16 73.2
MS.gene30853.t1 AT4G36900 55.000 60 27 0 61 120 26 85 8.28e-16 73.6
MS.gene30853.t1 AT2G22200 55.932 59 26 0 64 122 70 128 8.75e-16 74.7
MS.gene30853.t1 AT1G78080 55.932 59 26 0 64 122 151 209 1.44e-15 74.7
MS.gene30853.t1 AT2G23340 57.143 56 24 0 65 120 28 83 1.67e-15 72.0
MS.gene30853.t1 AT5G67190 55.357 56 25 0 65 120 21 76 1.83e-15 72.4
MS.gene30853.t1 AT3G11020 53.030 66 31 0 59 124 72 137 2.31e-15 74.3
MS.gene30853.t1 AT2G20880 33.835 133 81 2 41 173 165 290 2.53e-15 74.3
MS.gene30853.t1 AT1G36060 57.895 57 24 0 64 120 142 198 4.53e-15 73.2
MS.gene30853.t1 AT2G33710 46.250 80 38 1 60 134 65 144 5.85e-15 71.6
MS.gene30853.t1 AT5G65130 43.158 95 42 2 40 122 74 168 5.92e-15 72.4
MS.gene30853.t1 AT2G33710 54.098 61 28 0 60 120 65 125 6.32e-15 71.6
MS.gene30853.t1 AT5G65130 43.158 95 42 2 40 122 76 170 6.42e-15 72.4
MS.gene30853.t1 AT5G05410 55.932 59 26 0 65 123 79 137 6.45e-15 72.8
MS.gene30853.t1 AT1G71520 31.973 147 76 4 59 195 8 140 6.82e-15 69.7
MS.gene30853.t1 AT4G28140 44.444 81 40 1 47 122 120 200 7.84e-15 72.4
MS.gene30853.t1 AT5G05410 57.143 56 24 0 65 120 79 134 8.19e-15 72.8
MS.gene30853.t1 AT5G13330 49.315 73 32 2 61 133 37 104 2.16e-14 70.1
MS.gene30853.t1 AT5G07580 38.583 127 70 4 16 136 58 182 2.37e-14 69.7
MS.gene30853.t1 AT3G15210 57.143 56 24 0 65 120 25 80 3.45e-14 69.7
MS.gene30853.t1 AT1G22810 39.785 93 41 2 65 149 14 99 4.49e-14 67.4
MS.gene30853.t1 AT3G61630 32.192 146 81 4 65 198 105 244 4.70e-14 70.5
MS.gene30853.t1 AT5G61890 53.333 60 26 1 61 120 88 145 5.55e-14 69.3
MS.gene30853.t1 AT3G57600 55.357 56 25 0 65 120 28 83 5.58e-14 69.7
MS.gene30853.t1 AT5G61600 57.377 61 23 2 61 120 86 144 7.89e-14 68.9
MS.gene30853.t1 AT1G72360 48.485 66 31 1 55 120 18 80 8.78e-14 68.2
MS.gene30853.t1 AT5G44210 55.357 56 25 0 65 120 33 88 9.01e-14 68.2
MS.gene30853.t1 AT1G72360 48.529 68 31 2 53 120 68 131 1.55e-13 68.6
MS.gene30853.t1 AT1G72360 48.529 68 31 2 53 120 66 129 1.61e-13 68.2
MS.gene30853.t1 AT5G64750 38.384 99 55 2 75 173 195 287 1.72e-13 69.3
MS.gene30853.t1 AT1G15360 55.357 56 25 0 65 120 7 62 1.73e-13 67.4
MS.gene30853.t1 AT1G15360 55.357 56 25 0 65 120 7 62 1.73e-13 67.4
MS.gene30853.t1 AT5G51190 52.308 65 30 1 57 120 64 128 1.93e-13 67.4
MS.gene30853.t1 AT4G11140 38.710 93 44 2 65 150 87 173 2.29e-13 68.2
MS.gene30853.t1 AT4G27950 53.571 56 26 0 65 120 118 173 2.66e-13 68.6
MS.gene30853.t1 AT1G03800 47.059 68 33 1 53 120 44 108 3.90e-13 67.0
MS.gene30853.t1 AT5G47230 53.125 64 27 2 58 120 151 212 4.10e-13 67.8
MS.gene30853.t1 AT5G43410 51.667 60 28 1 62 120 12 71 4.92e-13 64.3
MS.gene30853.t1 AT1G75490 45.833 72 39 0 64 135 41 112 6.19e-13 65.9
MS.gene30853.t1 AT4G31060 50.000 56 28 0 65 120 27 82 7.77e-13 65.1
MS.gene30853.t1 AT5G19790 46.154 78 38 2 46 122 5 79 1.08e-12 65.9
MS.gene30853.t1 AT5G25390 51.786 56 27 0 65 120 7 62 1.33e-12 64.7
MS.gene30853.t1 AT3G23230 52.632 57 26 1 65 120 20 76 1.49e-12 63.5
MS.gene30853.t1 AT5G53290 50.877 57 28 0 65 121 125 181 2.73e-12 65.5
MS.gene30853.t1 AT3G20310 50.000 62 31 0 59 120 21 82 2.80e-12 64.7
MS.gene30853.t1 AT5G25190 55.357 56 25 0 65 120 8 63 3.05e-12 63.5
MS.gene30853.t1 AT1G28360 55.357 56 25 0 65 120 12 67 3.85e-12 63.5
MS.gene30853.t1 AT5G18450 51.724 58 28 0 64 121 33 90 4.28e-12 64.7
MS.gene30853.t1 AT1G77640 48.889 90 40 2 65 148 43 132 4.64e-12 63.9
MS.gene30853.t1 AT2G46310 31.343 134 83 3 65 195 99 226 5.97e-12 64.3
MS.gene30853.t1 AT4G17490 51.562 64 28 2 58 120 132 193 6.52e-12 63.9
MS.gene30853.t1 AT1G28370 51.786 56 27 0 65 120 20 75 6.76e-12 62.4
MS.gene30853.t1 AT5G61590 48.276 87 42 2 51 136 95 179 7.99e-12 62.8
MS.gene30853.t1 AT4G23750 49.123 57 29 0 65 121 122 178 1.03e-11 63.9
MS.gene30853.t1 AT4G23750 49.123 57 29 0 65 121 122 178 1.03e-11 63.9
MS.gene30853.t1 AT2G40340 50.000 56 28 0 65 120 14 69 1.22e-11 63.2
MS.gene30853.t1 AT2G40340 50.000 56 28 0 65 120 14 69 1.22e-11 63.2
MS.gene30853.t1 AT2G40340 50.000 56 28 0 65 120 14 69 1.22e-11 63.2
MS.gene30853.t1 AT1G28370 51.786 56 27 0 65 120 58 113 1.23e-11 62.4
MS.gene30853.t1 AT1G12890 42.308 78 42 1 43 120 2 76 1.31e-11 62.4
MS.gene30853.t1 AT2G40350 45.833 72 32 1 65 136 74 138 1.34e-11 61.2
MS.gene30853.t1 AT1G50640 53.571 56 26 0 65 120 28 83 1.50e-11 62.4
MS.gene30853.t1 AT2G40350 45.833 72 32 1 65 136 67 131 1.54e-11 60.8
MS.gene30853.t1 AT2G40340 50.000 56 28 0 65 120 72 127 1.93e-11 62.8
MS.gene30853.t1 AT5G47220 52.632 57 26 1 65 120 117 173 1.94e-11 62.4
MS.gene30853.t1 AT2G40340 50.000 56 28 0 65 120 72 127 2.28e-11 62.8
MS.gene30853.t1 AT2G40340 50.000 56 28 0 65 120 79 134 2.67e-11 62.8
MS.gene30853.t1 AT5G07310 51.562 64 29 1 61 124 90 151 6.82e-11 60.8

Find 77 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAACTCTCGGTGGAATT+TGG 0.218037 6.2:-58411458 None:intergenic
ATGTTGCTTCAATGGCATTA+AGG 0.227810 6.2:+58411720 MS.gene30853:CDS
TTCCTCCCAGCACGCTTCTT+TGG 0.236811 6.2:-58411548 None:intergenic
GGAAGAGGAACTTAGATAAA+TGG 0.256718 6.2:+58411612 MS.gene30853:CDS
CAAATCTTAGTCTTCTTGTT+TGG 0.292823 6.2:-58411653 None:intergenic
GCCAGAGTTGTTGAGGAATA+TGG 0.301561 6.2:+58411973 MS.gene30853:CDS
ACCTCTTCATCTTGAAAATC+TGG 0.311282 6.2:-58412061 None:intergenic
GCCTGAGTGGTGGCAGGTAT+AGG 0.319307 6.2:-58411788 None:intergenic
GACTCGCCACCCGGTATATA+GGG 0.321867 6.2:+58411583 MS.gene30853:CDS
AGACTCGCCACCCGGTATAT+AGG 0.350439 6.2:+58411582 MS.gene30853:CDS
CCTGAGTGGTGGCAGGTATA+GGG 0.356312 6.2:-58411787 None:intergenic
CGGTGGAATTTGGAGAAAAC+TGG 0.366649 6.2:-58411448 None:intergenic
GACTTGTATGGAAGAGGAAG+AGG 0.398759 6.2:+58411928 MS.gene30853:CDS
ATGTGCCCGGGCTGCCATCT+CGG 0.400727 6.2:-58411696 None:intergenic
TGTTGCTTCAATGGCATTAA+GGG 0.407611 6.2:+58411721 MS.gene30853:CDS
AACTGCCGAGATGGCAGCCC+GGG 0.407631 6.2:+58411691 MS.gene30853:CDS
TGCGAATTCAGAGGGCTCTC+AGG 0.415939 6.2:+58411481 MS.gene30853:CDS
CAAACAAGAAGACTAAGATT+TGG 0.423028 6.2:+58411654 MS.gene30853:CDS
GAAGAGGAAGAGGAAGAAGA+GGG 0.430166 6.2:+58411938 MS.gene30853:CDS
GAAGAGGAACTTAGATAAAT+GGG 0.434368 6.2:+58411613 MS.gene30853:CDS
TGCTGGGAGGAAGAAGTTCC+AGG 0.438027 6.2:+58411559 MS.gene30853:CDS
ATGTCTCCTACACATAGCTT+TGG 0.439535 6.2:+58412001 MS.gene30853:CDS
GGCACATGATGTTGCTTCAA+TGG 0.452514 6.2:+58411712 MS.gene30853:CDS
TGTCTCCTACACATAGCTTT+GGG 0.457669 6.2:+58412002 MS.gene30853:CDS
GCTAACCTCACTTCCTCGTT+GGG 0.459051 6.2:-58411515 None:intergenic
ATACCGGGTGGCGAGTCTCC+TGG 0.468976 6.2:-58411577 None:intergenic
TTCCTCACACCCCTATATAC+CGG 0.471420 6.2:-58411593 None:intergenic
GGAGCAGAGTAGGACTTGTA+TGG 0.472667 6.2:+58411916 MS.gene30853:CDS
GGAAGAGGAAGAGGAAGAAG+AGG 0.473659 6.2:+58411937 MS.gene30853:CDS
CGGGCTGCCATCTCGGCAGT+TGG 0.488790 6.2:-58411689 None:intergenic
TTGAAGCAACATCATGTGCC+CGG 0.494126 6.2:-58411709 None:intergenic
ACGACTCCAAAGAAGCGTGC+TGG 0.499803 6.2:+58411542 MS.gene30853:CDS
AGCGGCTGCACAGGCCGCAG+AGG 0.499896 6.2:+58411826 MS.gene30853:CDS
TATATAGGGGTGTGAGGAAG+AGG 0.500596 6.2:+58411597 MS.gene30853:CDS
AGCTAACCTCACTTCCTCGT+TGG 0.500899 6.2:-58411516 None:intergenic
CGACTCCAAAGAAGCGTGCT+GGG 0.504020 6.2:+58411543 MS.gene30853:CDS
GGCCGCAGAGGCTTTCAGAC+CGG 0.508268 6.2:+58411838 MS.gene30853:CDS
AAGATGAAGAGGTATCACTA+TGG 0.512792 6.2:+58412071 MS.gene30853:CDS
GAGTAGGACTTGTATGGAAG+AGG 0.516467 6.2:+58411922 MS.gene30853:CDS
GCCATATTCCTCAACAACTC+TGG 0.516505 6.2:-58411974 None:intergenic
GCGAATTCAGAGGGCTCTCA+GGG 0.519443 6.2:+58411482 MS.gene30853:CDS
CAACTGCCGAGATGGCAGCC+CGG 0.522483 6.2:+58411690 MS.gene30853:CDS
AAGAGGAAGAGGAAGAAGAG+GGG 0.525108 6.2:+58411939 MS.gene30853:CDS
TTAGTCATCGAAGTCTTGTC+CGG 0.525341 6.2:-58411857 None:intergenic
TGAATTCGCAAATGAACTCT+CGG 0.541132 6.2:-58411468 None:intergenic
TAAATGGGTGTGTGAAATGA+GGG 0.541686 6.2:+58411628 MS.gene30853:CDS
GGCTATTGCCACCTCTGCTA+CGG 0.542428 6.2:+58411892 MS.gene30853:CDS
GGAGTCTGCAAAGTTGAGAC+AGG 0.548191 6.2:-58411753 None:intergenic
AGTTCATTTGCGAATTCAGA+GGG 0.549616 6.2:+58411473 MS.gene30853:CDS
AGAGGAAGAGGAAGAAGAGG+GGG 0.554107 6.2:+58411940 MS.gene30853:CDS
GTTCCAGGAGACTCGCCACC+CGG 0.558195 6.2:+58411574 MS.gene30853:CDS
CCCTATACCTGCCACCACTC+AGG 0.559517 6.2:+58411787 MS.gene30853:CDS
CTGCTACGGAGGAGCAGAGT+AGG 0.566112 6.2:+58411906 MS.gene30853:CDS
CTGCTCCTCCGTAGCAGAGG+TGG 0.568749 6.2:-58411900 None:intergenic
TGAAGCAACATCATGTGCCC+GGG 0.576327 6.2:-58411708 None:intergenic
TATTGCCACCTCTGCTACGG+AGG 0.578389 6.2:+58411895 MS.gene30853:CDS
AAGAAGACTAAGATTTGGCT+AGG 0.578791 6.2:+58411659 MS.gene30853:CDS
TCCTCACACCCCTATATACC+GGG 0.585609 6.2:-58411592 None:intergenic
ATAAATGGGTGTGTGAAATG+AGG 0.586819 6.2:+58411627 MS.gene30853:CDS
GAGTTCATTTGCGAATTCAG+AGG 0.592725 6.2:+58411472 MS.gene30853:CDS
TGAACATGCCAGAGTTGTTG+AGG 0.595940 6.2:+58411966 MS.gene30853:CDS
TGATACCCAAAGCTATGTGT+AGG 0.600852 6.2:-58412007 None:intergenic
GTTGCTTCAATGGCATTAAG+GGG 0.609844 6.2:+58411722 MS.gene30853:CDS
ACTCTGCTCCTCCGTAGCAG+AGG 0.628165 6.2:-58411903 None:intergenic
CAATTCCCAACGAGGAAGTG+AGG 0.632492 6.2:+58411510 MS.gene30853:CDS
ACTCGCCACCCGGTATATAG+GGG 0.659441 6.2:+58411584 MS.gene30853:CDS
ACCCGGTATATAGGGGTGTG+AGG 0.669533 6.2:+58411591 MS.gene30853:CDS
TCAACTTTGCAGACTCCGCG+TGG 0.671197 6.2:+58411759 MS.gene30853:CDS
GTCCGGTCTGAAAGCCTCTG+CGG 0.672100 6.2:-58411840 None:intergenic
CTCCAAAGAAGCGTGCTGGG+AGG 0.687412 6.2:+58411546 MS.gene30853:CDS
ATTCGCAAATGAACTCTCGG+TGG 0.692873 6.2:-58411465 None:intergenic
GAATTTGGAGAAAACTGGTG+TGG 0.699539 6.2:-58411443 None:intergenic
GATGACTAATGACATTGACA+CGG 0.709180 6.2:+58411871 MS.gene30853:CDS
CGAATTCAGAGGGCTCTCAG+GGG 0.717384 6.2:+58411483 MS.gene30853:CDS
AGGTATAGGGAGTCGCCACG+CGG 0.731956 6.2:-58411774 None:intergenic
GGGGATGTCAATTCCCAACG+AGG 0.739386 6.2:+58411502 MS.gene30853:CDS
TCACACCCCTATATACCGGG+TGG 0.772358 6.2:-58411589 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
CAAACAAGAAGACTAAGATT+TGG + chr6.2:58411654-58411673 MS.gene30853:CDS 30.0%
GAAGAGGAACTTAGATAAAT+GGG + chr6.2:58411613-58411632 MS.gene30853:CDS 30.0%
GGCAAAAGATATACAAAAAG+CGG + chr6.2:58411808-58411827 MS.gene30853:CDS 30.0%
! CAAATCTTAGTCTTCTTGTT+TGG - chr6.2:58411656-58411675 None:intergenic 30.0%
AAGAAGACTAAGATTTGGCT+AGG + chr6.2:58411659-58411678 MS.gene30853:CDS 35.0%
ACCTCTTCATCTTGAAAATC+TGG - chr6.2:58412064-58412083 None:intergenic 35.0%
AGTTCATTTGCGAATTCAGA+GGG + chr6.2:58411473-58411492 MS.gene30853:CDS 35.0%
ATAAATGGGTGTGTGAAATG+AGG + chr6.2:58411627-58411646 MS.gene30853:CDS 35.0%
GATGACTAATGACATTGACA+CGG + chr6.2:58411871-58411890 MS.gene30853:CDS 35.0%
GGAAGAGGAACTTAGATAAA+TGG + chr6.2:58411612-58411631 MS.gene30853:CDS 35.0%
TAAATGGGTGTGTGAAATGA+GGG + chr6.2:58411628-58411647 MS.gene30853:CDS 35.0%
TGAATTCGCAAATGAACTCT+CGG - chr6.2:58411471-58411490 None:intergenic 35.0%
! ATGTTGCTTCAATGGCATTA+AGG + chr6.2:58411720-58411739 MS.gene30853:CDS 35.0%
! TGTTGCTTCAATGGCATTAA+GGG + chr6.2:58411721-58411740 MS.gene30853:CDS 35.0%
! TTGTATATCTTTTGCCTGAG+TGG - chr6.2:58411804-58411823 None:intergenic 35.0%
!! AAGATGAAGAGGTATCACTA+TGG + chr6.2:58412071-58412090 MS.gene30853:CDS 35.0%
!! TCCAGATTTTCAAGATGAAG+AGG + chr6.2:58412060-58412079 MS.gene30853:CDS 35.0%
AATGAACTCTCGGTGGAATT+TGG - chr6.2:58411461-58411480 None:intergenic 40.0%
ATGTCTCCTACACATAGCTT+TGG + chr6.2:58412001-58412020 MS.gene30853:CDS 40.0%
GAATTTGGAGAAAACTGGTG+TGG - chr6.2:58411446-58411465 None:intergenic 40.0%
GAGTTCATTTGCGAATTCAG+AGG + chr6.2:58411472-58411491 MS.gene30853:CDS 40.0%
GTTGCTTCAATGGCATTAAG+GGG + chr6.2:58411722-58411741 MS.gene30853:CDS 40.0%
TGATACCCAAAGCTATGTGT+AGG - chr6.2:58412010-58412029 None:intergenic 40.0%
TGTCTCCTACACATAGCTTT+GGG + chr6.2:58412002-58412021 MS.gene30853:CDS 40.0%
! TATATCTTTTGCCTGAGTGG+TGG - chr6.2:58411801-58411820 None:intergenic 40.0%
! TTAGTCATCGAAGTCTTGTC+CGG - chr6.2:58411860-58411879 None:intergenic 40.0%
AAGAGGAAGAGGAAGAAGAG+GGG + chr6.2:58411939-58411958 MS.gene30853:CDS 45.0%
ATTCGCAAATGAACTCTCGG+TGG - chr6.2:58411468-58411487 None:intergenic 45.0%
CGGTGGAATTTGGAGAAAAC+TGG - chr6.2:58411451-58411470 None:intergenic 45.0%
GAAGAGGAAGAGGAAGAAGA+GGG + chr6.2:58411938-58411957 MS.gene30853:CDS 45.0%
GACTTGTATGGAAGAGGAAG+AGG + chr6.2:58411928-58411947 MS.gene30853:CDS 45.0%
GAGTAGGACTTGTATGGAAG+AGG + chr6.2:58411922-58411941 MS.gene30853:CDS 45.0%
GCCAGAGTTGTTGAGGAATA+TGG + chr6.2:58411973-58411992 MS.gene30853:CDS 45.0%
GCCATATTCCTCAACAACTC+TGG - chr6.2:58411977-58411996 None:intergenic 45.0%
TATACAAAAAGCGGCTGCAC+AGG + chr6.2:58411817-58411836 MS.gene30853:CDS 45.0%
TGAACATGCCAGAGTTGTTG+AGG + chr6.2:58411966-58411985 MS.gene30853:CDS 45.0%
TTCCTCACACCCCTATATAC+CGG - chr6.2:58411596-58411615 None:intergenic 45.0%
TTGAAGCAACATCATGTGCC+CGG - chr6.2:58411712-58411731 None:intergenic 45.0%
! GGCACATGATGTTGCTTCAA+TGG + chr6.2:58411712-58411731 MS.gene30853:CDS 45.0%
! TATATAGGGGTGTGAGGAAG+AGG + chr6.2:58411597-58411616 MS.gene30853:CDS 45.0%
AGAGGAAGAGGAAGAAGAGG+GGG + chr6.2:58411940-58411959 MS.gene30853:CDS 50.0%
AGCTAACCTCACTTCCTCGT+TGG - chr6.2:58411519-58411538 None:intergenic 50.0%
CAATTCCCAACGAGGAAGTG+AGG + chr6.2:58411510-58411529 MS.gene30853:CDS 50.0%
GCTAACCTCACTTCCTCGTT+GGG - chr6.2:58411518-58411537 None:intergenic 50.0%
GGAAGAGGAAGAGGAAGAAG+AGG + chr6.2:58411937-58411956 MS.gene30853:CDS 50.0%
GGAGCAGAGTAGGACTTGTA+TGG + chr6.2:58411916-58411935 MS.gene30853:CDS 50.0%
GGAGTCTGCAAAGTTGAGAC+AGG - chr6.2:58411756-58411775 None:intergenic 50.0%
TCCTCACACCCCTATATACC+GGG - chr6.2:58411595-58411614 None:intergenic 50.0%
TGAAGCAACATCATGTGCCC+GGG - chr6.2:58411711-58411730 None:intergenic 50.0%
! CACTTTTCCAACTGCCGAGA+TGG + chr6.2:58411682-58411701 MS.gene30853:CDS 50.0%
ACTCGCCACCCGGTATATAG+GGG + chr6.2:58411584-58411603 MS.gene30853:CDS 55.0%
AGACTCGCCACCCGGTATAT+AGG + chr6.2:58411582-58411601 MS.gene30853:CDS 55.0%
CCTGAGTGGTGGCAGGTATA+GGG - chr6.2:58411790-58411809 None:intergenic 55.0%
CGAATTCAGAGGGCTCTCAG+GGG + chr6.2:58411483-58411502 MS.gene30853:CDS 55.0%
GACTCGCCACCCGGTATATA+GGG + chr6.2:58411583-58411602 MS.gene30853:CDS 55.0%
GCGAATTCAGAGGGCTCTCA+GGG + chr6.2:58411482-58411501 MS.gene30853:CDS 55.0%
GGCTATTGCCACCTCTGCTA+CGG + chr6.2:58411892-58411911 MS.gene30853:CDS 55.0%
GGGGATGTCAATTCCCAACG+AGG + chr6.2:58411502-58411521 MS.gene30853:CDS 55.0%
TATTGCCACCTCTGCTACGG+AGG + chr6.2:58411895-58411914 MS.gene30853:CDS 55.0%
TCAACTTTGCAGACTCCGCG+TGG + chr6.2:58411759-58411778 MS.gene30853:CDS 55.0%
TCACACCCCTATATACCGGG+TGG - chr6.2:58411592-58411611 None:intergenic 55.0%
TGCGAATTCAGAGGGCTCTC+AGG + chr6.2:58411481-58411500 MS.gene30853:CDS 55.0%
TGCTGGGAGGAAGAAGTTCC+AGG + chr6.2:58411559-58411578 MS.gene30853:CDS 55.0%
TTCCTCCCAGCACGCTTCTT+TGG - chr6.2:58411551-58411570 None:intergenic 55.0%
! ACCCGGTATATAGGGGTGTG+AGG + chr6.2:58411591-58411610 MS.gene30853:CDS 55.0%
! ACGACTCCAAAGAAGCGTGC+TGG + chr6.2:58411542-58411561 MS.gene30853:CDS 55.0%
! CGACTCCAAAGAAGCGTGCT+GGG + chr6.2:58411543-58411562 MS.gene30853:CDS 55.0%
! TCTTTTGCCTGAGTGGTGGC+AGG - chr6.2:58411797-58411816 None:intergenic 55.0%
ACTCTGCTCCTCCGTAGCAG+AGG - chr6.2:58411906-58411925 None:intergenic 60.0%
AGGTATAGGGAGTCGCCACG+CGG - chr6.2:58411777-58411796 None:intergenic 60.0%
CCCTATACCTGCCACCACTC+AGG + chr6.2:58411787-58411806 MS.gene30853:CDS 60.0%
CTGCTACGGAGGAGCAGAGT+AGG + chr6.2:58411906-58411925 MS.gene30853:CDS 60.0%
GCCTGAGTGGTGGCAGGTAT+AGG - chr6.2:58411791-58411810 None:intergenic 60.0%
GTCCGGTCTGAAAGCCTCTG+CGG - chr6.2:58411843-58411862 None:intergenic 60.0%
! CTCCAAAGAAGCGTGCTGGG+AGG + chr6.2:58411546-58411565 MS.gene30853:CDS 60.0%
AACTGCCGAGATGGCAGCCC+GGG + chr6.2:58411691-58411710 MS.gene30853:CDS 65.0%
ATACCGGGTGGCGAGTCTCC+TGG - chr6.2:58411580-58411599 None:intergenic 65.0%
ATGTGCCCGGGCTGCCATCT+CGG - chr6.2:58411699-58411718 None:intergenic 65.0%
CAACTGCCGAGATGGCAGCC+CGG + chr6.2:58411690-58411709 MS.gene30853:CDS 65.0%
CTGCTCCTCCGTAGCAGAGG+TGG - chr6.2:58411903-58411922 None:intergenic 65.0%
GGCCGCAGAGGCTTTCAGAC+CGG + chr6.2:58411838-58411857 MS.gene30853:CDS 65.0%
GTTCCAGGAGACTCGCCACC+CGG + chr6.2:58411574-58411593 MS.gene30853:CDS 65.0%
CGGGCTGCCATCTCGGCAGT+TGG - chr6.2:58411692-58411711 None:intergenic 70.0%
AGCGGCTGCACAGGCCGCAG+AGG + chr6.2:58411826-58411845 MS.gene30853:CDS 75.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 58411407 58412102 58411407 ID=MS.gene30853
chr6.2 mRNA 58411407 58412102 58411407 ID=MS.gene30853.t1;Parent=MS.gene30853
chr6.2 exon 58411407 58412102 58411407 ID=MS.gene30853.t1.exon1;Parent=MS.gene30853.t1
chr6.2 CDS 58411407 58412102 58411407 ID=cds.MS.gene30853.t1;Parent=MS.gene30853.t1
Gene Sequence

>MS.gene30853

CACATGGATATGTTAACAACTAACAACTCTTCTTATCCACACCAGTTTTCTCCAAATTCCACCGAGAGTTCATTTGCGAATTCAGAGGGCTCTCAGGGGATGTCAATTCCCAACGAGGAAGTGAGGTTAGCTGCGACGACTCCAAAGAAGCGTGCTGGGAGGAAGAAGTTCCAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCAAACAAGAAGACTAAGATTTGGCTAGGCACTTTTCCAACTGCCGAGATGGCAGCCCGGGCACATGATGTTGCTTCAATGGCATTAAGGGGACGCTACGCCTGTCTCAACTTTGCAGACTCCGCGTGGCGACTCCCTATACCTGCCACCACTCAGGCAAAAGATATACAAAAAGCGGCTGCACAGGCCGCAGAGGCTTTCAGACCGGACAAGACTTCGATGACTAATGACATTGACACGGCTATTGCCACCTCTGCTACGGAGGAGCAGAGTAGGACTTGTATGGAAGAGGAAGAGGAAGAAGAGGGGGCGATGAACATGCCAGAGTTGTTGAGGAATATGGCGCTAATGTCTCCTACACATAGCTTTGGGTATCATGAGTATGAAGATATTCATGTTCAAGACTTTCCAGATTTTCAAGATGAAGAGGTATCACTATGGAATTATTAA

Protein sequence

>MS.gene30853.t1

HMDMLTTNNSSYPHQFSPNSTESSFANSEGSQGMSIPNEEVRLAATTPKKRAGRKKFQETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVASMALRGRYACLNFADSAWRLPIPATTQAKDIQKAAAQAAEAFRPDKTSMTNDIDTAIATSATEEQSRTCMEEEEEEEGAMNMPELLRNMALMSPTHSFGYHEYEDIHVQDFPDFQDEEVSLWNY